RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16416
         (64 letters)



>d1xhba1 b.42.2.1 (A:423-553) Polypeptide
          N-acetylgalactosaminyltransferase 1, C-terminal domain
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 131

 Score = 43.3 bits (101), Expect = 9e-08
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 1  MPLDYYYLGEVKNAETLNCLDTMGRKTGEK 30
          +P  Y+ LGE++N ET  CLD M RK  EK
Sbjct: 2  IPRHYFSLGEIRNVETNQCLDNMARKENEK 31


>d1vcla1 b.42.2.1 (A:1-150) Hemolytic lectin CEL-III, domains 1
          and 2 {Cucumaria echinata [TaxId: 40245]}
          Length = 150

 Score = 29.5 bits (65), Expect = 0.015
 Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 3/27 (11%)

Query: 2  PLDYYYLGEVKNAETLNCLDTMGRKTG 28
          PLD    GE+++ ++  C+D +G +  
Sbjct: 7  PLDI---GELRSFKSKQCVDIVGNQGS 30


>d1vcla2 b.42.2.1 (A:151-283) Hemolytic lectin CEL-III, domains 1
          and 2 {Cucumaria echinata [TaxId: 40245]}
          Length = 133

 Score = 28.0 bits (61), Expect = 0.052
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 4  DYYYLGEVKNAETLNCLDTMGRKTGEKNVKNTRTG 38
          + +Y G ++N ++  CLD  G       +  +   
Sbjct: 2  ELFY-GRLRNEKSDLCLDVEGSDGKGNVLMYSCED 35


>d1ugja_ b.41.1.3 (A:) RIKEN cDNA 2310057j16 protein (KIAA1543)
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 141

 Score = 25.5 bits (56), Expect = 0.34
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 34 NTRTGPKCFDNYTAEDNKYIII 55
          +  +GP+ +   +A+ NK+II 
Sbjct: 3  SGSSGPRLYKEPSAKSNKFIIH 24


>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
          thermophilus [TaxId: 274]}
          Length = 1504

 Score = 24.8 bits (53), Expect = 0.93
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 9  GEVKNAETLN 18
          GEV+  ET+N
Sbjct: 23 GEVEKPETIN 32


>d1knma_ b.42.2.1 (A:) Xylan binding domain, CBM13
          (Endo-1,4-beta-xylanase C-terminal domain)
          {Streptomyces lividans [TaxId: 1916]}
          Length = 129

 Score = 23.7 bits (50), Expect = 1.9
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 9  GEVKNAETLNCLDTMGRKTGE 29
          G++K   +  CLD     T +
Sbjct: 6  GQIKGVGSGRCLDVPDASTSD 26


>d1n2aa2 c.47.1.5 (A:1-80) Class beta GST {Escherichia coli
          [TaxId: 562]}
          Length = 80

 Score = 22.6 bits (48), Expect = 3.2
 Identities = 7/34 (20%), Positives = 9/34 (26%)

Query: 29 EKNVKNTRTGPKCFDNYTAEDNKYIIIYLDRQHP 62
            N K         D     +   I+ YL    P
Sbjct: 45 AVNPKGQVPALLLDDGTLLTEGVAIMQYLADSVP 78


>d1o1va_ b.60.1.2 (A:) Ileal lipid-binding protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 127

 Score = 22.5 bits (48), Expect = 3.9
 Identities = 6/42 (14%), Positives = 13/42 (30%)

Query: 22  TMGRKTGEKNVKNTRTGPKCFDNYTAEDNKYIIIYLDRQHPR 63
           T     G+++   T  G         E  K ++ + +     
Sbjct: 60  TNKFTVGKESNIQTMGGKTFKATVQMEGGKLVVNFPNYHQTS 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0501    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 232,521
Number of extensions: 7561
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 9
Length of query: 64
Length of database: 2,407,596
Length adjustment: 33
Effective length of query: 31
Effective length of database: 1,954,506
Effective search space: 60589686
Effective search space used: 60589686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.4 bits)