BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16417
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N-
Acetylgalactosaminyltransferase-T1
Length = 472
Score = 172 bits (436), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 78/100 (78%), Positives = 89/100 (89%)
Query: 4 KNDGKTVVCPIIDVISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREMMRRGGDRSSPL 63
K+D +TVVCPIIDVISD TFEY+ SDMT+GGFNWKLNFRWY VP REM RR GDR+ P+
Sbjct: 140 KHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPV 199
Query: 64 RTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103
RTPTMAGGLF+ID+DYF E+G+YD GMDIWGGENLE+SFR
Sbjct: 200 RTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFR 239
>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp
And Ea2
pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
Length = 501
Score = 112 bits (280), Expect = 5e-26, Method: Composition-based stats.
Identities = 52/98 (53%), Positives = 67/98 (68%)
Query: 6 DGKTVVCPIIDVISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREMMRRGGDRSSPLRT 65
D VV PIIDVI+ F+Y+ AS GGF+W L F+W + P + R G+ +P++T
Sbjct: 174 DRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKT 233
Query: 66 PTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103
P +AGGLF +DK YF ELG YD MD+WGGENLE+SFR
Sbjct: 234 PMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFR 271
>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
Mn2+
pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
Galnac-ser On Lectin Domain
Length = 570
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 66/97 (68%), Gaps = 4/97 (4%)
Query: 8 KTVVCPIIDVISDQTFEYIT-ASDMTWGGFNWKLNFRWYRVPPREMMRRGGDRSSPLRTP 66
KT+VCP+IDVI F Y T A D G F+W++ ++ +PP E+ + D S P +P
Sbjct: 226 KTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPP-ELQK--ADPSDPFESP 282
Query: 67 TMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103
MAGGLFA+D+ +F+ELG YD G++IWGGE E+SF+
Sbjct: 283 VMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFK 319
>pdb|2Z87|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
pdb|2Z87|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
Length = 624
Score = 32.0 bits (71), Expect = 0.085, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 60 SSPLRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103
++P R +GG A K + + G +DE WGGE+ E +R
Sbjct: 269 NTPFRF--FSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYR 310
>pdb|2Z86|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|C Chain C, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|D Chain D, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
Length = 625
Score = 32.0 bits (71), Expect = 0.085, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 60 SSPLRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103
++P R +GG A K + + G +DE WGGE+ E +R
Sbjct: 270 NTPFRF--FSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYR 311
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym:
1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase
From Mycob Tuberculosis H37rv
Length = 722
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 18 ISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREMM 53
+ QT +T+SD TWG +W + R R P E M
Sbjct: 212 VPPQTASRVTSSDYTWGDDDW-MAGRALRNPVNEAM 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,031,962
Number of Sequences: 62578
Number of extensions: 168871
Number of successful extensions: 339
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 10
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)