Query psy16417
Match_columns 118
No_of_seqs 118 out of 487
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 20:46:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3736|consensus 100.0 1.7E-47 3.8E-52 328.3 7.9 112 3-115 251-367 (578)
2 KOG3738|consensus 100.0 5.1E-47 1.1E-51 314.9 6.6 112 3-115 229-345 (559)
3 KOG3737|consensus 100.0 3.5E-36 7.5E-41 250.5 7.3 112 3-115 265-385 (603)
4 cd02510 pp-GalNAc-T pp-GalNAc- 99.8 8.3E-19 1.8E-23 137.2 6.2 111 3-115 108-223 (299)
5 PF02709 Glyco_transf_7C: N-te 99.0 3.9E-11 8.5E-16 79.7 0.3 51 64-114 15-70 (78)
6 PF10111 Glyco_tranf_2_2: Glyc 98.6 1.3E-08 2.8E-13 80.0 1.1 40 64-103 164-203 (281)
7 cd00899 b4GalT Beta-4-Galactos 98.3 3.8E-07 8.3E-12 71.2 1.9 38 66-103 109-146 (219)
8 cd06420 GT2_Chondriotin_Pol_N 97.6 3.1E-05 6.6E-10 55.0 1.9 37 67-103 125-161 (182)
9 cd04186 GT_2_like_c Subfamily 97.3 7.1E-05 1.5E-09 51.6 0.7 50 65-115 109-163 (166)
10 COG1216 Predicted glycosyltran 97.2 0.00029 6.4E-09 55.8 2.7 45 67-112 166-215 (305)
11 cd02526 GT2_RfbF_like RfbF is 97.0 0.00023 5E-09 52.7 1.0 50 65-115 148-202 (237)
12 cd04184 GT2_RfbC_Mx_like Myxoc 97.0 0.00037 7.9E-09 50.2 1.7 42 68-111 149-195 (202)
13 TIGR01556 rhamnosyltran L-rham 97.0 0.00023 5E-09 55.0 0.5 44 69-114 150-198 (281)
14 COG4092 Predicted glycosyltran 96.8 0.00048 1E-08 56.2 1.4 34 70-103 179-212 (346)
15 PF13641 Glyco_tranf_2_3: Glyc 96.7 0.0008 1.7E-08 49.6 1.6 48 62-112 153-205 (228)
16 cd06435 CESA_NdvC_like NdvC_li 96.2 0.0021 4.6E-08 47.7 1.3 45 66-113 156-205 (236)
17 PF13632 Glyco_trans_2_3: Glyc 95.8 0.0043 9.4E-08 44.9 1.4 47 64-112 68-119 (193)
18 cd02520 Glucosylceramide_synth 95.8 0.0021 4.6E-08 46.9 -0.3 49 65-114 121-174 (196)
19 cd02525 Succinoglycan_BP_ExoA 95.7 0.0054 1.2E-07 45.2 1.4 44 67-112 155-203 (249)
20 cd06427 CESA_like_2 CESA_like_ 95.5 0.0034 7.4E-08 47.3 -0.2 44 68-114 161-209 (241)
21 KOG3588|consensus 95.4 0.0044 9.5E-08 52.6 0.1 33 71-103 386-418 (494)
22 cd02522 GT_2_like_a GT_2_like_ 95.2 0.0089 1.9E-07 43.5 1.2 32 69-103 137-168 (221)
23 cd04185 GT_2_like_b Subfamily 95.0 0.0099 2.1E-07 43.0 0.9 43 70-114 123-170 (202)
24 cd06437 CESA_CaSu_A2 Cellulose 94.9 0.0057 1.2E-07 45.5 -0.4 43 69-114 163-210 (232)
25 cd06913 beta3GnTL1_like Beta 1 94.8 0.0098 2.1E-07 43.9 0.5 38 72-110 160-202 (219)
26 PRK11204 N-glycosyltransferase 94.8 0.013 2.8E-07 47.9 1.2 45 67-114 208-257 (420)
27 cd06421 CESA_CelA_like CESA_Ce 94.6 0.018 3.9E-07 42.2 1.6 47 65-114 157-208 (234)
28 PRK14583 hmsR N-glycosyltransf 94.3 0.025 5.4E-07 47.2 1.9 44 67-113 229-277 (444)
29 cd04192 GT_2_like_e Subfamily 94.3 0.033 7.1E-07 40.5 2.3 43 67-110 154-202 (229)
30 cd06433 GT_2_WfgS_like WfgS an 93.8 0.025 5.4E-07 39.8 0.9 44 67-112 141-189 (202)
31 cd04195 GT2_AmsE_like GT2_AmsE 93.2 0.014 3E-07 42.0 -1.3 42 69-113 151-197 (201)
32 TIGR03469 HonB hopene-associat 93.1 0.028 6.2E-07 46.0 0.2 45 66-111 207-256 (384)
33 KOG3916|consensus 92.8 0.046 1E-06 45.8 1.0 36 68-103 260-295 (372)
34 TIGR03472 HpnI hopanoid biosyn 91.8 0.029 6.2E-07 45.8 -1.3 43 69-112 201-248 (373)
35 PF05679 CHGN: Chondroitin N-a 91.6 0.09 2E-06 45.3 1.4 33 71-103 412-446 (499)
36 TIGR03111 glyc2_xrt_Gpos1 puta 90.1 0.06 1.3E-06 45.0 -1.0 41 67-110 214-260 (439)
37 cd04187 DPM1_like_bac Bacteria 89.9 0.23 5E-06 35.2 2.0 29 64-92 143-171 (181)
38 PRK11498 bcsA cellulose syntha 88.7 0.28 6.2E-06 45.2 2.2 43 65-110 415-462 (852)
39 cd04179 DPM_DPG-synthase_like 86.9 0.66 1.4E-05 32.5 2.8 28 64-91 147-176 (185)
40 cd06442 DPM1_like DPM1_like re 86.8 0.2 4.3E-06 36.5 0.0 47 67-116 150-202 (224)
41 cd06423 CESA_like CESA_like is 85.4 0.14 2.9E-06 34.4 -1.4 27 64-90 150-176 (180)
42 TIGR03030 CelA cellulose synth 82.1 0.89 1.9E-05 40.7 2.0 44 66-112 305-353 (713)
43 cd04196 GT_2_like_d Subfamily 80.8 0.9 1.9E-05 32.5 1.3 45 66-112 150-198 (214)
44 cd06438 EpsO_like EpsO protein 75.1 1.3 2.7E-05 31.8 0.7 29 68-100 155-183 (183)
45 COG1215 Glycosyltransferases, 74.6 2 4.4E-05 34.7 1.8 46 64-112 210-260 (439)
46 cd00761 Glyco_tranf_GTA_type G 74.4 0.64 1.4E-05 30.3 -0.9 32 71-103 115-146 (156)
47 PRK14716 bacteriophage N4 adso 72.0 2.4 5.3E-05 36.8 1.8 42 68-112 232-284 (504)
48 PLN02726 dolichyl-phosphate be 71.7 1.6 3.6E-05 32.8 0.6 49 66-116 164-217 (243)
49 PF13506 Glyco_transf_21: Glyc 69.6 2.7 5.9E-05 31.0 1.4 46 64-110 97-147 (175)
50 cd04190 Chitin_synth_C C-termi 67.4 4.1 9E-05 30.9 2.1 39 65-103 146-201 (244)
51 KOG3917|consensus 64.2 5.3 0.00011 32.3 2.1 36 68-103 181-216 (310)
52 cd04191 Glucan_BSP_ModH Glucan 62.6 4.9 0.00011 31.4 1.7 45 68-112 171-226 (254)
53 PF00535 Glycos_transf_2: Glyc 61.5 11 0.00024 25.0 3.1 23 62-84 147-169 (169)
54 PF13712 Glyco_tranf_2_5: Glyc 59.0 4 8.6E-05 31.3 0.6 39 61-103 140-179 (217)
55 cd04188 DPG_synthase DPG_synth 52.4 4.7 0.0001 29.3 0.0 45 71-117 159-208 (211)
56 cd06434 GT2_HAS Hyaluronan syn 49.8 1.4 3.1E-05 32.2 -3.1 49 65-114 149-210 (235)
57 PF01994 Trm56: tRNA ribose 2' 45.5 9.1 0.0002 27.6 0.6 26 91-116 91-117 (120)
58 cd06436 GlcNAc-1-P_transferase 43.1 21 0.00045 25.8 2.2 21 68-88 163-183 (191)
59 PF05628 Borrelia_P13: Borreli 37.8 24 0.00052 25.9 1.8 24 79-103 109-132 (135)
60 PF08260 Kinin: Insect kinin p 37.4 18 0.00039 14.3 0.6 8 87-94 1-8 (8)
61 COG1786 Swiveling domain assoc 37.1 42 0.00091 24.5 3.0 46 70-115 14-62 (131)
62 cd06439 CESA_like_1 CESA_like_ 34.4 6.5 0.00014 29.1 -1.7 44 65-114 178-226 (251)
63 PF03330 DPBB_1: Rare lipoprot 32.2 64 0.0014 20.3 3.0 27 64-90 47-73 (78)
64 PRK03958 tRNA 2'-O-methylase; 28.6 33 0.00072 26.2 1.3 25 92-116 147-172 (176)
65 PF12599 DUF3768: Protein of u 24.5 24 0.00053 23.9 -0.1 22 76-98 46-67 (84)
66 COG1303 Uncharacterized protei 20.2 59 0.0013 24.8 1.3 24 91-114 145-169 (179)
No 1
>KOG3736|consensus
Probab=100.00 E-value=1.7e-47 Score=328.31 Aligned_cols=112 Identities=61% Similarity=1.094 Sum_probs=106.6
Q ss_pred eeecCCEEEEeccceecccCceeeecCCceeEEEecccceEEEEcChhhhhhcCCCCCCceecccccCeEEEEehhhhhh
Q psy16417 3 HKNDGKTVVCPIIDVISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREMMRRGGDRSSPLRTPTMAGGLFAIDKDYFYE 82 (118)
Q Consensus 3 ~~e~~~~vV~PvID~Id~~tf~y~~~~~~~~ggfdW~L~f~w~~~~~~~~~~~~~~~~~Pi~sP~maGGlfAi~r~~F~~ 82 (118)
|++|+++||||+||+||.+||+|...++..+|||||.|+|+|..+|..+..++ .+++.||+||+||||||||+|+||++
T Consensus 251 I~~~r~tvv~PvID~Id~~tf~y~~~~~~~rGgFdW~l~f~w~~lP~~~~~~~-~~~t~PirsPtMaGglFAI~r~yF~e 329 (578)
T KOG3736|consen 251 IAEDRKTVVCPVIDVIDDNTFEYEKQSELMRGGFDWELTFKWERLPLPEEKRR-ELPTDPIRSPTMAGGLFAIDRKYFGE 329 (578)
T ss_pred hhhcCceeecceEEeecCcCceecccCccceeeeecceeEEeccCCccHhhcc-cCCCCCcCCcccCCceEEeeHHHHhh
Confidence 78999999999999999999999987788999999999999999998887755 56899999999999999999999999
Q ss_pred hCCCCCCCcccCccceeeeee-----eeEEEEecCCcc
Q psy16417 83 LGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVDKE 115 (118)
Q Consensus 83 lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~~~ 115 (118)
||+||+||+||||||+||||| |+||++|||||.
T Consensus 330 iG~yD~gMdiwGGENlElSfrvWqCGG~lei~PCSrVG 367 (578)
T KOG3736|consen 330 LGSYDEGMDIWGGENLELSFRVWQCGGRLEIVPCSRVG 367 (578)
T ss_pred ccCccccccccChhhceeeEEEeccCCeEEecCcccee
Confidence 999999999999999999999 999999999984
No 2
>KOG3738|consensus
Probab=100.00 E-value=5.1e-47 Score=314.91 Aligned_cols=112 Identities=50% Similarity=0.919 Sum_probs=107.5
Q ss_pred eeecCCEEEEeccceecccCceeeecCCceeEEEecccceEEEEcChhhhhhcCCCCCCceecccccCeEEEEehhhhhh
Q psy16417 3 HKNDGKTVVCPIIDVISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREMMRRGGDRSSPLRTPTMAGGLFAIDKDYFYE 82 (118)
Q Consensus 3 ~~e~~~~vV~PvID~Id~~tf~y~~~~~~~~ggfdW~L~f~w~~~~~~~~~~~~~~~~~Pi~sP~maGGlfAi~r~~F~~ 82 (118)
++||+++||||+||+||.+||+|..+++..+|||||+|.|+|+.++.++...| .+|+.||+||+||||+|+|+|+||.+
T Consensus 229 vaed~trvVsPiiDvIn~dnf~Y~~asadLrGGFDWsLhF~We~~~~eqr~sr-~~Pt~PirtP~iAGGlfvidk~wF~~ 307 (559)
T KOG3738|consen 229 VAEDTTRVVSPIIDVINLDNFSYVGASADLRGGFDWSLHFKWEQMQLEQRESR-ADPTAPIRTPAIAGGLFVIDKEWFNE 307 (559)
T ss_pred HhhcccceeecccccccccccccccchhhhcCCcceEEEEEehhcCHHHHhhc-cCCCCcccCccccceeEEecHHHHHH
Confidence 57999999999999999999999999999999999999999999988777766 78999999999999999999999999
Q ss_pred hCCCCCCCcccCccceeeeee-----eeEEEEecCCcc
Q psy16417 83 LGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVDKE 115 (118)
Q Consensus 83 lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~~~ 115 (118)
||.||..|+||||||+||||| |+|||+|||||.
T Consensus 308 LGkyd~~mdiWGGEn~ElsfrvW~CGGslEIvPCSRVG 345 (559)
T KOG3738|consen 308 LGKYDMDMDIWGGENLELSFRVWQCGGSLEIVPCSRVG 345 (559)
T ss_pred hcccCccccccCCcceEEEEEEEeeCCeeEEEeccchh
Confidence 999999999999999999999 999999999985
No 3
>KOG3737|consensus
Probab=100.00 E-value=3.5e-36 Score=250.48 Aligned_cols=112 Identities=41% Similarity=0.788 Sum_probs=103.4
Q ss_pred eeecCCEEEEeccceecccCceeeec--C--CceeEEEecccceEEEEcChhhhhhcCCCCCCceecccccCeEEEEehh
Q psy16417 3 HKNDGKTVVCPIIDVISDQTFEYITA--S--DMTWGGFNWKLNFRWYRVPPREMMRRGGDRSSPLRTPTMAGGLFAIDKD 78 (118)
Q Consensus 3 ~~e~~~~vV~PvID~Id~~tf~y~~~--~--~~~~ggfdW~L~f~w~~~~~~~~~~~~~~~~~Pi~sP~maGGlfAi~r~ 78 (118)
|+.|||....|+||.||.+||+|+.. + ...+|.|+|.|-++-.+++++|...|+ ..++|+|||++|||||||+|.
T Consensus 265 I~rdRtvmTVP~IDgId~n~~EyrpvyG~dn~h~rGifeWgmLyKe~~~t~rE~r~Rk-hnsePyRSPthAGGLfAInRe 343 (603)
T KOG3737|consen 265 ISRDRTVMTVPLIDGIDGNTYEYRPVYGGDNDHARGIFEWGMLYKEVPLTPREKRLRK-HNSEPYRSPTHAGGLFAINRE 343 (603)
T ss_pred cccCceEEEEeeeeeecCCceEEeeccCCcchhhcchhhhhheeccCCCCHHHHHhhh-ccCCCCCCcccccceeeehHH
Confidence 67899999999999999999999863 1 257999999999999999998877664 578999999999999999999
Q ss_pred hhhhhCCCCCCCcccCccceeeeee-----eeEEEEecCCcc
Q psy16417 79 YFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVDKE 115 (118)
Q Consensus 79 ~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~~~ 115 (118)
||.+||.||||++||||||+||||| |+|++||||||.
T Consensus 344 ~F~ELG~YDpgLqiWGGEnfElSfKIWQCGG~i~fVPCSrVG 385 (603)
T KOG3737|consen 344 FFFELGLYDPGLQIWGGENFELSFKIWQCGGKILFVPCSRVG 385 (603)
T ss_pred HHHHhccCCCcceeecCcceeEEEEEEeeCCEEEEEEccccc
Confidence 9999999999999999999999999 999999999985
No 4
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.76 E-value=8.3e-19 Score=137.23 Aligned_cols=111 Identities=56% Similarity=1.057 Sum_probs=95.9
Q ss_pred eeecCCEEEEeccceecccCceeeecCCceeEEEecccceEEEEcChhhhhhcCCCCCCceecccccCeEEEEehhhhhh
Q psy16417 3 HKNDGKTVVCPIIDVISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREMMRRGGDRSSPLRTPTMAGGLFAIDKDYFYE 82 (118)
Q Consensus 3 ~~e~~~~vV~PvID~Id~~tf~y~~~~~~~~ggfdW~L~f~w~~~~~~~~~~~~~~~~~Pi~sP~maGGlfAi~r~~F~~ 82 (118)
+.+++..+|+|.|+.++.+++.|........++++|.+.+.|........ ....+..|.++|++.|++++|+|+.|.+
T Consensus 108 l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~irr~~~~~ 185 (299)
T cd02510 108 IAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEER--RRESPTAPIRSPTMAGGLFAIDREWFLE 185 (299)
T ss_pred HHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHh--hhcCCCCCccCccccceeeEEEHHHHHH
Confidence 35678899999999999999998765544689999999999987765443 1234567889999999999999999999
Q ss_pred hCCCCCCCcccCccceeeeee-----eeEEEEecCCcc
Q psy16417 83 LGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVDKE 115 (118)
Q Consensus 83 lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~~~ 115 (118)
+||||++|..||+|++|||+| +++.++|++.+.
T Consensus 186 vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~ 223 (299)
T cd02510 186 LGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVG 223 (299)
T ss_pred hCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEEE
Confidence 999999999999999999999 899999999875
No 5
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=99.04 E-value=3.9e-11 Score=79.65 Aligned_cols=51 Identities=29% Similarity=0.438 Sum_probs=38.0
Q ss_pred ecccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecCCc
Q psy16417 64 RTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVDK 114 (118)
Q Consensus 64 ~sP~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~~ 114 (118)
..+...||.++++|+.|.++||||+.|..||+|+.||+.| .+++.+|++..
T Consensus 15 ~~~~~~Gg~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~~~~~ 70 (78)
T PF02709_consen 15 PYPNFFGGVFAISREDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVPGSIG 70 (78)
T ss_dssp SSTT---SEEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SSTTTT
T ss_pred cCCCeeEEEEEEeHHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecCCceE
Confidence 4588899999999999999999999999999999999999 56777776654
No 6
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=98.59 E-value=1.3e-08 Score=80.00 Aligned_cols=40 Identities=30% Similarity=0.697 Sum_probs=37.3
Q ss_pred ecccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee
Q psy16417 64 RTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103 (118)
Q Consensus 64 ~sP~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR 103 (118)
...+++||+++|+|+.|.++||||+.+..||+|++||..|
T Consensus 164 ~~~~~~s~~~~i~r~~f~~iGGfDE~f~G~G~ED~D~~~R 203 (281)
T PF10111_consen 164 EFIAFASSCFLINREDFLEIGGFDERFRGWGYEDIDFGYR 203 (281)
T ss_pred ccccccceEEEEEHHHHHHhCCCCccccCCCcchHHHHHH
Confidence 3556788999999999999999999999999999999999
No 7
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=98.26 E-value=3.8e-07 Score=71.21 Aligned_cols=38 Identities=26% Similarity=0.578 Sum_probs=36.4
Q ss_pred ccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee
Q psy16417 66 PTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103 (118)
Q Consensus 66 P~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR 103 (118)
+.+.||++|+.|+-|.+++|||+++..||+|+-||+.|
T Consensus 109 ~~~~Gg~~~~~k~~f~~VNGf~n~f~GWGgEDdd~~~R 146 (219)
T cd00899 109 KTYFGGVLALTREQFRKVNGFSNAYWGWGGEDDDLYNR 146 (219)
T ss_pred ccccccceeeEHHHHHHhCCcCCcCccCCcchHHHHHH
Confidence 45799999999999999999999999999999999999
No 8
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=97.61 E-value=3.1e-05 Score=55.05 Aligned_cols=37 Identities=27% Similarity=0.496 Sum_probs=34.7
Q ss_pred cccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee
Q psy16417 67 TMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103 (118)
Q Consensus 67 ~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR 103 (118)
...|+.+++.|+.|.++||||+.+..||+|+.||++|
T Consensus 125 ~~~~~~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r 161 (182)
T cd06420 125 GIRGCNMSFWKKDLLAVNGFDEEFTGWGGEDSELVAR 161 (182)
T ss_pred EeccceEEEEHHHHHHhCCCCcccccCCcchHHHHHH
Confidence 4568889999999999999999999999999999999
No 9
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.32 E-value=7.1e-05 Score=51.59 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=43.7
Q ss_pred cccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecCCcc
Q psy16417 65 TPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVDKE 115 (118)
Q Consensus 65 sP~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~~~ 115 (118)
++...|++++++|+.|.++|+||+.+.. ++|+.+++.| .++...||+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~i~~~~~~~~~ 163 (166)
T cd04186 109 GPKVSGAFLLVRREVFEEVGGFDEDFFL-YYEDVDLCLRARLAGYRVLYVPQAVIY 163 (166)
T ss_pred EccCceeeEeeeHHHHHHcCCCChhhhc-cccHHHHHHHHHHcCCeEEEccceEEE
Confidence 3437899999999999999999999877 8899999998 799999998653
No 10
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=97.15 E-value=0.00029 Score=55.78 Aligned_cols=45 Identities=24% Similarity=0.516 Sum_probs=39.4
Q ss_pred cccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee----e-eEEEEecC
Q psy16417 67 TMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR----G-KCEIFAYV 112 (118)
Q Consensus 67 ~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR----G-~ieivPC~ 112 (118)
.+.|++++|+|+.|.++|+||+.+-.|. |++|+|+| | .+..+|=+
T Consensus 166 ~~~G~~~li~~~~~~~vG~~de~~F~y~-eD~D~~~R~~~~G~~i~~~p~a 215 (305)
T COG1216 166 SLSGACLLIRREAFEKVGGFDERFFIYY-EDVDLCLRARKAGYKIYYVPDA 215 (305)
T ss_pred hcceeeeEEcHHHHHHhCCCCcccceee-hHHHHHHHHHHcCCeEEEeecc
Confidence 5789999999999999999999998774 78999999 5 77777754
No 11
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=97.03 E-value=0.00023 Score=52.67 Aligned_cols=50 Identities=14% Similarity=0.063 Sum_probs=40.7
Q ss_pred cccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecCCcc
Q psy16417 65 TPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVDKE 115 (118)
Q Consensus 65 sP~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~~~ 115 (118)
.....+..++++|+.|.++|+||+.+. .++|++|+++| .++..+|++.+.
T Consensus 148 ~~~~~~~~~~~rr~~~~~~ggfd~~~~-~~~eD~d~~~r~~~~G~~~~~~~~~~v~ 202 (237)
T cd02526 148 VDFLITSGSLISLEALEKVGGFDEDLF-IDYVDTEWCLRARSKGYKIYVVPDAVLK 202 (237)
T ss_pred eeeeeccceEEcHHHHHHhCCCCHHHc-CccchHHHHHHHHHcCCcEEEEcCeEEE
Confidence 334444557899999999999999986 67899999999 489999987654
No 12
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.99 E-value=0.00037 Score=50.25 Aligned_cols=42 Identities=17% Similarity=0.491 Sum_probs=35.3
Q ss_pred ccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEec
Q psy16417 68 MAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAY 111 (118)
Q Consensus 68 maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC 111 (118)
..++..+++|+.|.++||||+++. ++|+.||++| +++..+|=
T Consensus 149 ~~~~~~~~~r~~~~~iggf~~~~~--~~eD~~l~~rl~~~g~~~~~~~~ 195 (202)
T cd04184 149 YIGHLLVYRRSLVRQVGGFREGFE--GAQDYDLVLRVSEHTDRIAHIPR 195 (202)
T ss_pred CccceEeEEHHHHHHhCCCCcCcc--cchhHHHHHHHHhccceEEEccH
Confidence 345667899999999999999975 7899999999 57777763
No 13
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=96.97 E-value=0.00023 Score=55.00 Aligned_cols=44 Identities=25% Similarity=0.199 Sum_probs=36.9
Q ss_pred cCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecCCc
Q psy16417 69 AGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVDK 114 (118)
Q Consensus 69 aGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~~ 114 (118)
.+|+ +|+|+.|.++|+||+.|.+++ |+.|+++| .++.++|.+.+
T Consensus 150 ~sg~-li~~~~~~~iG~fde~~fi~~-~D~e~~~R~~~~G~~i~~~~~~~~ 198 (281)
T TIGR01556 150 SSGC-LITREVYQRLGMMDEELFIDH-VDTEWSLRAQNYGIPLYIDPDIVL 198 (281)
T ss_pred cCcc-eeeHHHHHHhCCccHhhcccc-hHHHHHHHHHHCCCEEEEeCCEEE
Confidence 3454 699999999999999999875 99999999 47888887654
No 14
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=96.83 E-value=0.00048 Score=56.18 Aligned_cols=34 Identities=32% Similarity=0.548 Sum_probs=31.7
Q ss_pred CeEEEEehhhhhhhCCCCCCCcccCccceeeeee
Q psy16417 70 GGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103 (118)
Q Consensus 70 GGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR 103 (118)
-|+|.|+|..|..+||||+-+.+.|.|++|+--|
T Consensus 179 T~~~liN~~~F~~tgGydE~F~GhG~EDfe~~~R 212 (346)
T COG4092 179 TNIFLINRRMFSLTGGYDERFRGHGSEDFEFLTR 212 (346)
T ss_pred cceEEEehhHHHHhcCCccccccCCchhHHHHHH
Confidence 3799999999999999999999999999998665
No 15
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=96.70 E-value=0.0008 Score=49.58 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=30.4
Q ss_pred ceecccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecC
Q psy16417 62 PLRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYV 112 (118)
Q Consensus 62 Pi~sP~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~ 112 (118)
....+.+.|++++++|+.|.++|+||+ ...+|+.+|++| +++...|=+
T Consensus 153 ~~~~~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~~~~~~~~ 205 (228)
T PF13641_consen 153 ALGVAFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWRIVYAPDA 205 (228)
T ss_dssp ----S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--EEEEEEE
T ss_pred ccceeeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCcEEEECCc
Confidence 344566789999999999999999999 344499999999 677777733
No 16
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=96.21 E-value=0.0021 Score=47.67 Aligned_cols=45 Identities=20% Similarity=0.166 Sum_probs=37.2
Q ss_pred ccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecCC
Q psy16417 66 PTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVD 113 (118)
Q Consensus 66 P~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~ 113 (118)
....|.+++++|+.|.++||||+.+ .+|+.+|++| .++..+|.+.
T Consensus 156 ~~~~g~~~~~rr~~~~~iGgf~~~~---~~eD~dl~~r~~~~G~~~~~~~~~~ 205 (236)
T cd06435 156 IIQHGTMCLIRRSALDDVGGWDEWC---ITEDSELGLRMHEAGYIGVYVAQSY 205 (236)
T ss_pred eEEecceEEEEHHHHHHhCCCCCcc---ccchHHHHHHHHHCCcEEEEcchhh
Confidence 3456778899999999999999875 4899999999 6777777653
No 17
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=95.83 E-value=0.0043 Score=44.91 Aligned_cols=47 Identities=19% Similarity=0.346 Sum_probs=38.0
Q ss_pred ecccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecC
Q psy16417 64 RTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYV 112 (118)
Q Consensus 64 ~sP~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~ 112 (118)
.+....|..++++|+.+.++|+|| .-...+ |+.|+++| .++..+|=+
T Consensus 68 ~~~~~~G~~~~~r~~~l~~vg~~~-~~~~~~-ED~~l~~~l~~~G~~~~~~~~~ 119 (193)
T PF13632_consen 68 RPLFLSGSGMLFRREALREVGGFD-DPFSIG-EDMDLGFRLRRAGYRIVYVPDA 119 (193)
T ss_pred CCccccCcceeeeHHHHHHhCccc-cccccc-chHHHHHHHHHCCCEEEEeccc
Confidence 344577999999999999999999 555566 99999999 577777654
No 18
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=95.78 E-value=0.0021 Score=46.94 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=40.0
Q ss_pred cccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecCCc
Q psy16417 65 TPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVDK 114 (118)
Q Consensus 65 sP~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~~ 114 (118)
+....|+.++++|+.|.++||||. +....+|+.+|++| .++.++|++-+
T Consensus 121 ~~~~~g~~~~~r~~~~~~~ggf~~-~~~~~~eD~~l~~rl~~~G~~i~~~~~~~~ 174 (196)
T cd02520 121 CLCAFGKSMALRREVLDAIGGFEA-FADYLAEDYFLGKLIWRLGYRVVLSPYVVM 174 (196)
T ss_pred eecccCceeeeEHHHHHhccChHH-HhHHHHHHHHHHHHHHHcCCeEEEcchhee
Confidence 335678999999999999999974 54556899999999 68888887644
No 19
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=95.66 E-value=0.0054 Score=45.17 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=37.4
Q ss_pred cccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecC
Q psy16417 67 TMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYV 112 (118)
Q Consensus 67 ~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~ 112 (118)
...|+..+++|+.|.++|+||+.+. .+|+.||++| +++..+|.+
T Consensus 155 ~~~~~~~~~~~~~~~~~g~~~~~~~--~~eD~~l~~r~~~~G~~~~~~~~~ 203 (249)
T cd02525 155 VDTVHHGAYRREVFEKVGGFDESLV--RNEDAELNYRLRKAGYKIWLSPDI 203 (249)
T ss_pred ccccccceEEHHHHHHhCCCCcccC--ccchhHHHHHHHHcCcEEEEcCCe
Confidence 4567888999999999999999975 4799999999 688777754
No 20
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=95.49 E-value=0.0034 Score=47.28 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=35.3
Q ss_pred ccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecCCc
Q psy16417 68 MAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVDK 114 (118)
Q Consensus 68 maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~~ 114 (118)
+.|.+++++|+.|.++||||+.. -+|++||++| .++..+|...+
T Consensus 161 ~~g~~~~~rr~~~~~vgg~~~~~---~~eD~~l~~rl~~~G~r~~~~~~~~~ 209 (241)
T cd06427 161 LGGTSNHFRTDVLRELGGWDPFN---VTEDADLGLRLARAGYRTGVLNSTTL 209 (241)
T ss_pred cCCchHHhhHHHHHHcCCCCccc---chhhHHHHHHHHHCCceEEEeccccc
Confidence 34666889999999999999853 2799999999 58888776543
No 21
>KOG3588|consensus
Probab=95.38 E-value=0.0044 Score=52.64 Aligned_cols=33 Identities=24% Similarity=0.634 Sum_probs=30.4
Q ss_pred eEEEEehhhhhhhCCCCCCCcccCccceeeeee
Q psy16417 71 GLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103 (118)
Q Consensus 71 GlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR 103 (118)
|+-++-|.-|-.+||||...+.||+|++.|==|
T Consensus 386 Gmtc~yrsd~~~vgGFD~~I~GWG~EDV~Ly~K 418 (494)
T KOG3588|consen 386 GMTCQYRSDFLTVGGFDMEIKGWGGEDVDLYRK 418 (494)
T ss_pred ceeEEeeccceeecCcceeeeccCcchHHHHHH
Confidence 788999999999999999999999999998544
No 22
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.19 E-value=0.0089 Score=43.54 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=29.0
Q ss_pred cCeEEEEehhhhhhhCCCCCCCcccCccceeeeee
Q psy16417 69 AGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103 (118)
Q Consensus 69 aGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR 103 (118)
.+..++++|+.|.++|+||+.+ .+|+.+|++|
T Consensus 137 ~~~~~~~r~~~~~~~G~fd~~~---~~ED~d~~~r 168 (221)
T cd02522 137 GDQGLFIRRELFEELGGFPELP---LMEDVELVRR 168 (221)
T ss_pred CCceEEEEHHHHHHhCCCCccc---cccHHHHHHH
Confidence 3457899999999999999999 8899999999
No 23
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.98 E-value=0.0099 Score=43.02 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=35.2
Q ss_pred CeEEEEehhhhhhhCCCCCCCcccCccceeeeee----e-eEEEEecCCc
Q psy16417 70 GGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR----G-KCEIFAYVDK 114 (118)
Q Consensus 70 GGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR----G-~ieivPC~~~ 114 (118)
++.++++|+.|.++|++|+.+..|| |+.|++.| | ++ .+|.+-+
T Consensus 123 ~~~~~~~~~~~~~~g~~~~~~~~~~-eD~~~~~r~~~~G~~i-~~~~~~~ 170 (202)
T cd04185 123 FVGVLISRRVVEKIGLPDKEFFIWG-DDTEYTLRASKAGPGI-YVPDAVV 170 (202)
T ss_pred eEEEEEeHHHHHHhCCCChhhhccc-hHHHHHHHHHHcCCcE-EecceEE
Confidence 3557899999999999999998776 99999998 5 55 7776543
No 24
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=94.95 E-value=0.0057 Score=45.53 Aligned_cols=43 Identities=23% Similarity=0.320 Sum_probs=35.7
Q ss_pred cCeEEEEehhhhhhhCCCCCCCcccCccceeeeee----e-eEEEEecCCc
Q psy16417 69 AGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR----G-KCEIFAYVDK 114 (118)
Q Consensus 69 aGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR----G-~ieivPC~~~ 114 (118)
.|+..+++|+.|.++||||+.+ ..|++||++| | ++..+|++.+
T Consensus 163 ~g~~~~~rr~~~~~vgg~~~~~---~~ED~~l~~rl~~~G~~~~~~~~~~v 210 (232)
T cd06437 163 NGTAGVWRKECIEDAGGWNHDT---LTEDLDLSYRAQLKGWKFVYLDDVVV 210 (232)
T ss_pred ccchhhhhHHHHHHhCCCCCCc---chhhHHHHHHHHHCCCeEEEecccee
Confidence 4555678999999999999864 4799999999 4 8999988754
No 25
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=94.82 E-value=0.0098 Score=43.88 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=30.6
Q ss_pred EEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEe
Q psy16417 72 LFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFA 110 (118)
Q Consensus 72 lfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivP 110 (118)
.++++|+.|.++|+||+....+ +|+.+|-+| +++..+|
T Consensus 160 ~~~~rr~~~~~~g~f~~~~~~~-~eD~~l~~r~~~~g~~i~~~~ 202 (219)
T cd06913 160 TWFCSREWFSHVGPFDEGGKGV-PEDLLFFYEHLRKGGGVYRVD 202 (219)
T ss_pred cceeehhHHhhcCCccchhccc-hhHHHHHHHHHHcCCceEEEc
Confidence 3679999999999999985433 499999998 5666665
No 26
>PRK11204 N-glycosyltransferase; Provisional
Probab=94.79 E-value=0.013 Score=47.90 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=38.2
Q ss_pred cccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecCCc
Q psy16417 67 TMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVDK 114 (118)
Q Consensus 67 ~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~~ 114 (118)
...|.+++++|+.+.++|+||+.+. +|+.|+++| .++..+|.+.+
T Consensus 208 ~~~G~~~~~rr~~l~~vgg~~~~~~---~ED~~l~~rl~~~G~~i~~~p~~~~ 257 (420)
T PRK11204 208 TVSGVITAFRKSALHEVGYWSTDMI---TEDIDISWKLQLRGWDIRYEPRALC 257 (420)
T ss_pred EecceeeeeeHHHHHHhCCCCCCcc---cchHHHHHHHHHcCCeEEeccccEE
Confidence 3568889999999999999999874 699999999 68888887543
No 27
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=94.65 E-value=0.018 Score=42.19 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=38.1
Q ss_pred cccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecCCc
Q psy16417 65 TPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVDK 114 (118)
Q Consensus 65 sP~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~~ 114 (118)
.....|+..+++|+.|.++|+||+. ..+|+.|+++| .++..+|=+..
T Consensus 157 ~~~~~g~~~~~r~~~~~~ig~~~~~---~~~eD~~l~~r~~~~g~~i~~~~~~~~ 208 (234)
T cd06421 157 AAFCCGSGAVVRREALDEIGGFPTD---SVTEDLATSLRLHAKGWRSVYVPEPLA 208 (234)
T ss_pred CceecCceeeEeHHHHHHhCCCCcc---ceeccHHHHHHHHHcCceEEEecCccc
Confidence 4556788999999999999999965 34799999999 57777776543
No 28
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=94.33 E-value=0.025 Score=47.24 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=37.6
Q ss_pred cccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecCC
Q psy16417 67 TMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVD 113 (118)
Q Consensus 67 ~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~ 113 (118)
+..|+..+++|+.+.++||||+.+- .|++|+|+| .++...|.+.
T Consensus 229 ~~sG~~~~~rr~al~~vGg~~~~~i---~ED~dl~~rl~~~G~~i~~~p~a~ 277 (444)
T PRK14583 229 TVSGVVAAFRRRALADVGYWSPDMI---TEDIDISWKLQLKHWSVFFEPRGL 277 (444)
T ss_pred EecCceeEEEHHHHHHcCCCCCCcc---cccHHHHHHHHHcCCeEEEeeccE
Confidence 4568889999999999999999874 699999999 6788888653
No 29
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.32 E-value=0.033 Score=40.46 Aligned_cols=43 Identities=19% Similarity=0.316 Sum_probs=34.1
Q ss_pred cccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----e-eEEEEe
Q psy16417 67 TMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----G-KCEIFA 110 (118)
Q Consensus 67 ~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G-~ieivP 110 (118)
...|..++++|+.|.++||||+.+. ...|+.++.+| + ++..+|
T Consensus 154 ~~~g~~~~~rr~~~~~~ggf~~~~~-~~~eD~~~~~~~~~~g~~~~~~~~ 202 (229)
T cd04192 154 MCNGANMAYRKEAFFEVGGFEGNDH-IASGDDELLLAKVASKYPKVAYLK 202 (229)
T ss_pred ccccceEEEEHHHHHHhcCCccccc-cccCCHHHHHHHHHhCCCCEEEee
Confidence 3457889999999999999998766 45677799988 3 676664
No 30
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.85 E-value=0.025 Score=39.83 Aligned_cols=44 Identities=16% Similarity=0.312 Sum_probs=33.7
Q ss_pred cccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecC
Q psy16417 67 TMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYV 112 (118)
Q Consensus 67 ~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~ 112 (118)
.+.+..++++|+.|.++|+||+.+.. +|+.|+++| +.+..+|-.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~f~~~~~~--~~D~~~~~r~~~~g~~~~~~~~~ 189 (202)
T cd06433 141 PICHQATFFRRSLFEKYGGFDESYRI--AADYDLLLRLLLAGKIFKYLPEV 189 (202)
T ss_pred cccCcceEEEHHHHHHhCCCchhhCc--hhhHHHHHHHHHcCCceEecchh
Confidence 34555678999999999999999863 478999999 455455543
No 31
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=93.19 E-value=0.014 Score=41.98 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=35.0
Q ss_pred cCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecCC
Q psy16417 69 AGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVD 113 (118)
Q Consensus 69 aGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~ 113 (118)
.++.++++|+.|.++|+||+. .++|+.++.+| +++..+|...
T Consensus 151 ~~~~~~~rr~~~~~~g~~~~~---~~~eD~~~~~r~~~~g~~~~~~~~~~ 197 (201)
T cd04195 151 NHPTVMFRKSKVLAVGGYQDL---PLVEDYALWARMLANGARFANLPEIL 197 (201)
T ss_pred CChHHhhhHHHHHHcCCcCCC---CCchHHHHHHHHHHcCCceecccHHH
Confidence 345678999999999999976 78999999999 4788877653
No 32
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=93.13 E-value=0.028 Score=46.04 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=35.6
Q ss_pred ccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEec
Q psy16417 66 PTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAY 111 (118)
Q Consensus 66 P~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC 111 (118)
....|++++++|+.|+++||||+-.... .|+++|+.| +++.+.+.
T Consensus 207 ~~~~G~~~lirr~~~~~vGGf~~~~~~~-~ED~~L~~r~~~~G~~v~~~~~ 256 (384)
T TIGR03469 207 AAAAGGCILIRREALERIGGIAAIRGAL-IDDCTLAAAVKRSGGRIWLGLA 256 (384)
T ss_pred eeecceEEEEEHHHHHHcCCHHHHhhCc-ccHHHHHHHHHHcCCcEEEEec
Confidence 3457999999999999999999865543 799999987 46665543
No 33
>KOG3916|consensus
Probab=92.77 E-value=0.046 Score=45.76 Aligned_cols=36 Identities=28% Similarity=0.565 Sum_probs=34.0
Q ss_pred ccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee
Q psy16417 68 MAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103 (118)
Q Consensus 68 maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR 103 (118)
.-||+-|++|+-|.++-||-..+=.||||+=+|.-|
T Consensus 260 ~FGGVsalt~~qf~kINGFsN~fWGWGGEDDDl~nR 295 (372)
T KOG3916|consen 260 YFGGVSALTKEQFRKINGFSNAFWGWGGEDDDLWNR 295 (372)
T ss_pred hhCchhhccHHHHHHhcCCCchhcccCCcchHHHHH
Confidence 468999999999999999999999999999999877
No 34
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=91.82 E-value=0.029 Score=45.78 Aligned_cols=43 Identities=9% Similarity=0.075 Sum_probs=34.7
Q ss_pred cCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecC
Q psy16417 69 AGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYV 112 (118)
Q Consensus 69 aGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~ 112 (118)
.|..++++|+.|+++||||+-.... +|+++|+.| .++.+.|+.
T Consensus 201 ~G~~~a~RR~~l~~iGGf~~~~~~~-~ED~~l~~~i~~~G~~v~~~~~~ 248 (373)
T TIGR03472 201 FGATMALRRATLEAIGGLAALAHHL-ADDYWLGELVRALGLRVVLAPVV 248 (373)
T ss_pred cChhhheeHHHHHHcCChHHhcccc-hHHHHHHHHHHHcCCeEEecchh
Confidence 4778899999999999999765544 599999999 666666654
No 35
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=91.60 E-value=0.09 Score=45.29 Aligned_cols=33 Identities=24% Similarity=0.668 Sum_probs=30.1
Q ss_pred eEEEEehhhhhhh--CCCCCCCcccCccceeeeee
Q psy16417 71 GLFAIDKDYFYEL--GSYDEGMDIWGGENLEMSFR 103 (118)
Q Consensus 71 GlfAi~r~~F~~l--GgyD~gm~iWGgEn~ElSfR 103 (118)
|++++-|+-|..+ |++|.....||+|++||-=|
T Consensus 412 g~~~~YksDy~~~~~~~~~~~~~gwg~ED~~l~~~ 446 (499)
T PF05679_consen 412 GMVCFYKSDYMRIRGGGFDLSIRGWGGEDVDLYDK 446 (499)
T ss_pred ceEEEEhhhhhhhcccccccccccccccHHHHHHH
Confidence 8999999999999 99999999999999887533
No 36
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=90.14 E-value=0.06 Score=45.03 Aligned_cols=41 Identities=24% Similarity=0.490 Sum_probs=33.4
Q ss_pred cccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee------eeEEEEe
Q psy16417 67 TMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR------GKCEIFA 110 (118)
Q Consensus 67 ~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR------G~ieivP 110 (118)
.+.|.+++++|+.+.++||||+..- +||.|+++| +++...|
T Consensus 214 ~~sGa~~~~Rr~~l~~vggf~~~~i---~ED~~l~~rl~~~~g~kv~~~~ 260 (439)
T TIGR03111 214 TLSGAFSAFRRETILKTQLYNSETV---GEDTDMTFQIRELLDGKVYLCE 260 (439)
T ss_pred EEccHHHhhhHHHHHHhCCCCCCCc---CccHHHHHHHHHhcCCeEEECC
Confidence 4568888999999999999998763 899999987 5555544
No 37
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=89.88 E-value=0.23 Score=35.24 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=25.5
Q ss_pred ecccccCeEEEEehhhhhhhCCCCCCCcc
Q psy16417 64 RTPTMAGGLFAIDKDYFYELGSYDEGMDI 92 (118)
Q Consensus 64 ~sP~maGGlfAi~r~~F~~lGgyD~gm~i 92 (118)
+.+.+.+++++++|+.|.++|+||+.+..
T Consensus 143 ~~~~~~~~~~~~~r~~~~~i~~~d~~~~~ 171 (181)
T cd04187 143 DIPDNGGDFRLMDRKVVDALLLLPERHRF 171 (181)
T ss_pred CCCCCCCCEEEEcHHHHHHHHhcCCCCcc
Confidence 45667899999999999999999998873
No 38
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=88.67 E-value=0.28 Score=45.16 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=35.4
Q ss_pred cccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee----e-eEEEEe
Q psy16417 65 TPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR----G-KCEIFA 110 (118)
Q Consensus 65 sP~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR----G-~ieivP 110 (118)
.....|.+++++|+.|.++||||+++ -.||+|+++| | ++..+|
T Consensus 415 a~~~~Gs~aviRReaLeeVGGfd~~t---itED~dlslRL~~~Gyrv~yl~ 462 (852)
T PRK11498 415 ATFFCGSCAVIRRKPLDEIGGIAVET---VTEDAHTSLRLHRRGYTSAYMR 462 (852)
T ss_pred ccccccceeeeEHHHHHHhcCCCCCc---cCccHHHHHHHHHcCCEEEEEe
Confidence 34567899999999999999999885 3799999999 4 566654
No 39
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=86.89 E-value=0.66 Score=32.53 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=23.1
Q ss_pred ecccccCeEEEEehhhhhhh--CCCCCCCc
Q psy16417 64 RTPTMAGGLFAIDKDYFYEL--GSYDEGMD 91 (118)
Q Consensus 64 ~sP~maGGlfAi~r~~F~~l--GgyD~gm~ 91 (118)
..+.+.||+++++|+.|.++ |+++.++.
T Consensus 147 ~~~~~~~~~~~~~r~~~~~i~~~~~~~~~~ 176 (185)
T cd04179 147 RISDTQSGFRLFRREVLEALLSLLESNGFE 176 (185)
T ss_pred CCcCCCCceeeeHHHHHHHHHhhccccCcc
Confidence 35667899999999999999 77777763
No 40
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=86.81 E-value=0.2 Score=36.45 Aligned_cols=47 Identities=17% Similarity=0.100 Sum_probs=34.2
Q ss_pred cccCeEEEEehhhhhhhCCCCCCCcccCc-cceeeeee-----eeEEEEecCCccc
Q psy16417 67 TMAGGLFAIDKDYFYELGSYDEGMDIWGG-ENLEMSFR-----GKCEIFAYVDKER 116 (118)
Q Consensus 67 ~maGGlfAi~r~~F~~lGgyD~gm~iWGg-En~ElSfR-----G~ieivPC~~~~~ 116 (118)
...||.++++|+.|.++| +++...|. +..||.+| .++..+|++.+.+
T Consensus 150 ~~~~~~~~~~r~~~~~ig---~~~~~~~~~~~~~l~~~~~~~g~~i~~~p~~~~~~ 202 (224)
T cd06442 150 DPTSGFRAYRREVLEKLI---DSLVSKGYKFQLELLVRARRLGYRIVEVPITFVDR 202 (224)
T ss_pred CCCCccchhhHHHHHHHh---hhccCCCcEEeHHHHHHHHHcCCeEEEeCeEEecc
Confidence 345789999999999998 33333332 35788888 5899999886654
No 41
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=85.37 E-value=0.14 Score=34.40 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=23.9
Q ss_pred ecccccCeEEEEehhhhhhhCCCCCCC
Q psy16417 64 RTPTMAGGLFAIDKDYFYELGSYDEGM 90 (118)
Q Consensus 64 ~sP~maGGlfAi~r~~F~~lGgyD~gm 90 (118)
..+.+.|+.++++|+.|.++||||+.+
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~ggf~~~~ 176 (180)
T cd06423 150 GVLVLSGAFGAFRREALREVGGWDEDT 176 (180)
T ss_pred ceeecCchHHHHHHHHHHHhCCccccC
Confidence 346678999999999999999999986
No 42
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=82.09 E-value=0.89 Score=40.72 Aligned_cols=44 Identities=11% Similarity=0.173 Sum_probs=35.0
Q ss_pred ccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecC
Q psy16417 66 PTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYV 112 (118)
Q Consensus 66 P~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~ 112 (118)
+...|...+++|+.|.++||||++.- .|++|+++| .++..+|-+
T Consensus 305 ~~~~Gs~~~iRR~al~~iGGf~~~~v---tED~~l~~rL~~~G~~~~y~~~~ 353 (713)
T TIGR03030 305 AFFCGSAAVLRREALDEIGGIAGETV---TEDAETALKLHRRGWNSAYLDRP 353 (713)
T ss_pred eeecCceeEEEHHHHHHcCCCCCCCc---CcHHHHHHHHHHcCCeEEEeccc
Confidence 34568889999999999999998653 799999999 365666533
No 43
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=80.82 E-value=0.9 Score=32.45 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=35.5
Q ss_pred ccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee----eeEEEEecC
Q psy16417 66 PTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR----GKCEIFAYV 112 (118)
Q Consensus 66 P~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR----G~ieivPC~ 112 (118)
....|..++++|+.|.++|+|++.+ -..|+.++.++ |++..+|..
T Consensus 150 ~~~~~~~~~~r~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~~ 198 (214)
T cd04196 150 NVVTGCTMAFNRELLELALPFPDAD--VIMHDWWLALLASAFGKVVFLDEP 198 (214)
T ss_pred CccCCceeeEEHHHHHhhccccccc--cccchHHHHHHHHHcCceEEcchh
Confidence 4456888999999999999999987 34567777666 788877764
No 44
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=75.09 E-value=1.3 Score=31.76 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=22.5
Q ss_pred ccCeEEEEehhhhhhhCCCCCCCcccCccceee
Q psy16417 68 MAGGLFAIDKDYFYELGSYDEGMDIWGGENLEM 100 (118)
Q Consensus 68 maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~El 100 (118)
..|..++++|+.|.+ |||+++.- .|++||
T Consensus 155 ~~G~~~~~rr~~l~~-~g~~~~~l---~ED~~~ 183 (183)
T cd06438 155 LGGTGMCFPWAVLRQ-APWAAHSL---TEDLEF 183 (183)
T ss_pred ecCchhhhHHHHHHh-CCCCCCCc---ccccCC
Confidence 467788999999999 88987543 677664
No 45
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=74.60 E-value=2 Score=34.67 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=38.6
Q ss_pred ecccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecC
Q psy16417 64 RTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYV 112 (118)
Q Consensus 64 ~sP~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~ 112 (118)
......|...+++|+...++|++++..- +||.++++| .++..+|.+
T Consensus 210 ~~~~~~G~~~~~rr~aL~~~g~~~~~~i---~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 210 LISFLSGSSSAFRRSALEEVGGWLEDTI---TEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred CeEEEcceeeeEEHHHHHHhCCCCCCce---eccHHHHHHHHHCCCeEEEeecc
Confidence 4667889999999999999998888754 799999999 677777665
No 46
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=74.40 E-value=0.64 Score=30.26 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=26.7
Q ss_pred eEEEEehhhhhhhCCCCCCCcccCccceeeeee
Q psy16417 71 GLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103 (118)
Q Consensus 71 GlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR 103 (118)
|+++++++.|.++|++++....+ +|+..+..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~-~ed~~~~~~ 146 (156)
T cd00761 115 GNLLFRRELLEEIGGFDEALLSG-EEDDDFLLR 146 (156)
T ss_pred chheeeHHHHHHhCCcchHhcCC-cchHHHHHH
Confidence 89999999999999999988655 676666554
No 47
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=72.04 E-value=2.4 Score=36.82 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=33.6
Q ss_pred ccCeEEEEehhhhhhh-----CC-CCCCCcccCccceeeeee-----eeEEEEecC
Q psy16417 68 MAGGLFAIDKDYFYEL-----GS-YDEGMDIWGGENLEMSFR-----GKCEIFAYV 112 (118)
Q Consensus 68 maGGlfAi~r~~F~~l-----Gg-yD~gm~iWGgEn~ElSfR-----G~ieivPC~ 112 (118)
.+|..++++|+.+.++ |+ ||+.+- .|++|||+| .++.++|-+
T Consensus 232 ~~Gtg~afRR~aLe~l~~~~GG~~fd~~sL---TED~dLglRL~~~G~rv~y~p~a 284 (504)
T PRK14716 232 SAGVGTAFSRRALERLAAERGGQPFDSDSL---TEDYDIGLRLKRAGFRQIFVRVR 284 (504)
T ss_pred cCCeeEEeEHHHHHHHHhhcCCCCCCCCCc---chHHHHHHHHHHCCCEEEEeccc
Confidence 4688999999999999 33 898754 799999999 666766644
No 48
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=71.72 E-value=1.6 Score=32.80 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=36.5
Q ss_pred ccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecCCccc
Q psy16417 66 PTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVDKER 116 (118)
Q Consensus 66 P~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~~~~ 116 (118)
+-..||+.+++|+.|.+++.++..- .|. +++||.+| .++..+|++-++|
T Consensus 164 ~d~~g~~~~~rr~~~~~i~~~~~~~-~~~-~~~el~~~~~~~g~~i~~vp~~~~~r 217 (243)
T PLN02726 164 SDLTGSFRLYKRSALEDLVSSVVSK-GYV-FQMEIIVRASRKGYRIEEVPITFVDR 217 (243)
T ss_pred CcCCCcccceeHHHHHHHHhhccCC-CcE-EehHHHHHHHHcCCcEEEeCcEEeCC
Confidence 3456889999999999998655422 122 36899988 5899999987665
No 49
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=69.58 E-value=2.7 Score=31.00 Aligned_cols=46 Identities=17% Similarity=0.340 Sum_probs=35.8
Q ss_pred ecccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEe
Q psy16417 64 RTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFA 110 (118)
Q Consensus 64 ~sP~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivP 110 (118)
..+..-|+++|++|+.+.++|||+.=-. +=+|++.|+-+ .++...|
T Consensus 97 ~~~~~~G~~m~~rr~~L~~~GG~~~l~~-~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 97 GAPFAWGGSMAFRREALEEIGGFEALAD-YLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred CCCceecceeeeEHHHHHHcccHHHHhh-hhhHHHHHHHHHHHCCCeEEEcc
Confidence 4566789999999999999999987333 34788888866 5666666
No 50
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=67.45 E-value=4.1 Score=30.87 Aligned_cols=39 Identities=8% Similarity=-0.034 Sum_probs=29.4
Q ss_pred cccccCeEEEEehhhhhhhCCCCCCC-----------c------ccCccceeeeee
Q psy16417 65 TPTMAGGLFAIDKDYFYELGSYDEGM-----------D------IWGGENLEMSFR 103 (118)
Q Consensus 65 sP~maGGlfAi~r~~F~~lGgyD~gm-----------~------iWGgEn~ElSfR 103 (118)
++.++|.+++++++.+.++|++..-+ + ..=+|+.+|++|
T Consensus 146 ~~~~~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~ 201 (244)
T cd04190 146 VTCLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTL 201 (244)
T ss_pred eEECCCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHH
Confidence 56778999999999999997765321 1 113799999998
No 51
>KOG3917|consensus
Probab=64.24 E-value=5.3 Score=32.34 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=33.9
Q ss_pred ccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee
Q psy16417 68 MAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103 (118)
Q Consensus 68 maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR 103 (118)
..||+..++++-|.++-|.-..+=.||-|+-|+=+|
T Consensus 181 fvGGILll~~~hyk~~NGMSN~yWGWGlEDDEFy~R 216 (310)
T KOG3917|consen 181 FVGGILLLTLKHYKKLNGMSNKYWGWGLEDDEFYLR 216 (310)
T ss_pred hcceeEEeeHHHHHHhcCccccccccCcccchhhhe
Confidence 468999999999999999999999999999999888
No 52
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=62.59 E-value=4.9 Score=31.44 Aligned_cols=45 Identities=13% Similarity=0.052 Sum_probs=34.8
Q ss_pred ccCeEEEEehhhhhhhCCCCC--CCcccC----ccceeeeee-----eeEEEEecC
Q psy16417 68 MAGGLFAIDKDYFYELGSYDE--GMDIWG----GENLEMSFR-----GKCEIFAYV 112 (118)
Q Consensus 68 maGGlfAi~r~~F~~lGgyD~--gm~iWG----gEn~ElSfR-----G~ieivPC~ 112 (118)
..|-.++++|+-|.++|++.. |+..|+ .|++++|++ .++...|-+
T Consensus 171 ~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~ 226 (254)
T cd04191 171 YWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPDL 226 (254)
T ss_pred ccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccCC
Confidence 447779999999999877763 566675 489999999 677777754
No 53
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=61.55 E-value=11 Score=25.02 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=19.5
Q ss_pred ceecccccCeEEEEehhhhhhhC
Q psy16417 62 PLRTPTMAGGLFAIDKDYFYELG 84 (118)
Q Consensus 62 Pi~sP~maGGlfAi~r~~F~~lG 84 (118)
....+...|++.+++|+.|.++|
T Consensus 147 ~~~~~~~~~~~~~~rr~~~~~~~ 169 (169)
T PF00535_consen 147 FWKISFFIGSCALFRRSVFEEIG 169 (169)
T ss_dssp STTSSEESSSCEEEEEHHHHHCH
T ss_pred cCCcccccccEEEEEHHHHHhhC
Confidence 34577788899999999999987
No 54
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=58.99 E-value=4 Score=31.28 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=27.6
Q ss_pred CceecccccCeEEEEehhhhhhhCCCCCC-CcccCccceeeeee
Q psy16417 61 SPLRTPTMAGGLFAIDKDYFYELGSYDEG-MDIWGGENLEMSFR 103 (118)
Q Consensus 61 ~Pi~sP~maGGlfAi~r~~F~~lGgyD~g-m~iWGgEn~ElSfR 103 (118)
.|.+.=++-|-+||+.|+.+ +||+. +..|..-++++|++
T Consensus 140 ~~~~V~avDg~ll~~~~dv~----~fde~~~~gfH~Ydvd~cl~ 179 (217)
T PF13712_consen 140 PPEEVQAVDGLLLATQKDVP----RFDEDLFTGFHFYDVDQCLE 179 (217)
T ss_dssp SSEEEEEE-TTEEEEETTB---------SS--SSSSHHHHHHHH
T ss_pred CceeEEEecceEEEEEcccC----CCCccccCCcchHHHHHHHH
Confidence 45666778899999999999 89999 99999999999998
No 55
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=52.42 E-value=4.7 Score=29.26 Aligned_cols=45 Identities=16% Similarity=0.044 Sum_probs=35.0
Q ss_pred eEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecCCcccc
Q psy16417 71 GLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVDKERT 117 (118)
Q Consensus 71 GlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~~~~~ 117 (118)
|..+++|+...+++++. ....|+ +++||++| .++.-+|++-.+|.
T Consensus 159 g~~~~~r~~~~~~~~~~-~~~~~~-~d~el~~r~~~~g~~~~~vpi~~~~~~ 208 (211)
T cd04188 159 GFKLFTRDAARRLFPRL-HLERWA-FDVELLVLARRLGYPIEEVPVRWVEIP 208 (211)
T ss_pred CceeEcHHHHHHHHhhh-hccceE-eeHHHHHHHHHcCCeEEEcCcceecCC
Confidence 68889999999997543 234455 58999999 59999998877764
No 56
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=49.84 E-value=1.4 Score=32.22 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=34.9
Q ss_pred cccccCeEEEEehhhhhhhCCCCCCC--------cccCccceeeeee-----eeEEEEecCCc
Q psy16417 65 TPTMAGGLFAIDKDYFYELGSYDEGM--------DIWGGENLEMSFR-----GKCEIFAYVDK 114 (118)
Q Consensus 65 sP~maGGlfAi~r~~F~~lGgyD~gm--------~iWGgEn~ElSfR-----G~ieivPC~~~ 114 (118)
++.+.|.+.+++|+.+.++ +|+.++ ..-.+|+.+|+.| .++...|++.+
T Consensus 149 ~~~~~G~~~~~rr~~l~~~-~~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~~~~~~~~ 210 (235)
T cd06434 149 VPCLSGRTAAYRTEILKDF-LFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQYTSEA 210 (235)
T ss_pred EEEccCcHHHHHHHHHhhh-hhHHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEEEecCCeE
Confidence 4556777888899999876 445444 3346789999888 67777777653
No 57
>PF01994 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; InterPro: IPR002845 This entry represents tRNA ribose 2'-O-methyltransferase aTrm56, which specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. The crystal structure of Pyrococcus horikoshii aTrm56 complexed with S-adenosyl-L-methionine has been determined to 2.48 A resolution. aTrm56 consists of the SPOUT domain, which contains the characteristic deep trefoil knot, and a unique C-terminal beta-hairpin []. A conserved cytidine at position 56 of tRNA contributes to the maintenance of the L-shaped tertiary structure. aTrm56 catalyzes the 2'-O-methylation of the cytidine residue in archaeal tRNA, using S-adenosyl-L-methionine. Biochemical assays showed that aTrm56 forms a dimer and prefers the L-shaped tRNA to the lambda form as its substrate [, ].; GO: 0008175 tRNA methyltransferase activity, 0002128 tRNA nucleoside ribose methylation, 0005737 cytoplasm; PDB: 2YY8_A 2O3A_B.
Probab=45.46 E-value=9.1 Score=27.59 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=15.8
Q ss_pred cccCccceeeeee-eeEEEEecCCccc
Q psy16417 91 DIWGGENLEMSFR-GKCEIFAYVDKER 116 (118)
Q Consensus 91 ~iWGgEn~ElSfR-G~ieivPC~~~~~ 116 (118)
+.+.|+.+++.|. +.++|+||.+-.+
T Consensus 91 rl~~G~el~~~f~~a~~~ViP~~~GK~ 117 (120)
T PF01994_consen 91 RLFEGKELDREFEDAKIKVIPSERGKR 117 (120)
T ss_dssp HHCTTGCCC---TT-SCEEE--SSS-E
T ss_pred HhcCCcchhhccCCCcEEEEecCCCcc
Confidence 3478899999998 9999999998654
No 58
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=43.13 E-value=21 Score=25.78 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=18.7
Q ss_pred ccCeEEEEehhhhhhhCCCCC
Q psy16417 68 MAGGLFAIDKDYFYELGSYDE 88 (118)
Q Consensus 68 maGGlfAi~r~~F~~lGgyD~ 88 (118)
+.|..++++|+.+.++|||++
T Consensus 163 ~~G~~~~~r~~~l~~vgg~~~ 183 (191)
T cd06436 163 LGGNGQFMRLSALDGLIGEEP 183 (191)
T ss_pred ECCeeEEEeHHHHHHhhcCCC
Confidence 568889999999999999886
No 59
>PF05628 Borrelia_P13: Borrelia membrane protein P13; InterPro: IPR008420 Lyme borreliosis (or Lyme's disease) is one of the most common tick-borne diseases. It is caused by bacteria from the genus Borrelia. This family consists of P13 proteins from Borrelia species. P13 is a 13 kDa integral membrane protein which is post-translationally processed at both ends and modified by an unknown mechanism [].
Probab=37.84 E-value=24 Score=25.93 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=18.6
Q ss_pred hhhhhCCCCCCCcccCccceeeeee
Q psy16417 79 YFYELGSYDEGMDIWGGENLEMSFR 103 (118)
Q Consensus 79 ~F~~lGgyD~gm~iWGgEn~ElSfR 103 (118)
.=-+|+||.|.+++ |-.-+|||||
T Consensus 109 Lgi~L~Gfep~~di-~~~gfqlsfk 132 (135)
T PF05628_consen 109 LGIALAGFEPNFDI-GINGFQLSFK 132 (135)
T ss_pred hhHHhcCCCCCccc-ccCcEEEeee
Confidence 33578999999984 5557999997
No 60
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=37.38 E-value=18 Score=14.31 Aligned_cols=8 Identities=38% Similarity=1.145 Sum_probs=5.3
Q ss_pred CCCCcccC
Q psy16417 87 DEGMDIWG 94 (118)
Q Consensus 87 D~gm~iWG 94 (118)
||.|..||
T Consensus 1 ~pafnswg 8 (8)
T PF08260_consen 1 DPAFNSWG 8 (8)
T ss_pred CccccccC
Confidence 56667776
No 61
>COG1786 Swiveling domain associated with predicted aconitase [Energy production and conversion]
Probab=37.09 E-value=42 Score=24.54 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=33.6
Q ss_pred CeEEEEehhhhhhhCCCCCCCcccCccceee---eeeeeEEEEecCCcc
Q psy16417 70 GGLFAIDKDYFYELGSYDEGMDIWGGENLEM---SFRGKCEIFAYVDKE 115 (118)
Q Consensus 70 GGlfAi~r~~F~~lGgyD~gm~iWGgEn~El---SfRG~ieivPC~~~~ 115 (118)
-|...++++.+.-+||-||.=-.==...-++ |++|+|.+.|-+|-.
T Consensus 14 eGevlvs~~plSFlGgVDPeTG~vid~~h~l~G~~l~Gkilv~P~grGS 62 (131)
T COG1786 14 EGEVLVSTEPLSFLGGVDPETGKVIDPHHPLHGESLTGKILVFPGGRGS 62 (131)
T ss_pred eeeEEEeCCcceeecccCcccccCcCCCCCcccccccceEEEeeCCCCc
Confidence 4677888888888999998764333333346 777999999988754
No 62
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=34.43 E-value=6.5 Score=29.12 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=31.9
Q ss_pred cccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee----e-eEEEEecCCc
Q psy16417 65 TPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR----G-KCEIFAYVDK 114 (118)
Q Consensus 65 sP~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR----G-~ieivPC~~~ 114 (118)
.....|++++++|+.|. +|+.. ...|+.+|+.| | ++..+|++..
T Consensus 178 ~~~~~g~~~~~rr~~~~---~~~~~---~~~eD~~l~~~~~~~G~~~~~~~~~~~ 226 (251)
T cd06439 178 TVGANGAIYAIRRELFR---PLPAD---TINDDFVLPLRIARQGYRVVYEPDAVA 226 (251)
T ss_pred eeeecchHHHhHHHHhc---CCCcc---cchhHHHHHHHHHHcCCeEEeccccEE
Confidence 34467888889999887 44433 35799999988 4 7878887653
No 63
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=32.24 E-value=64 Score=20.34 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=22.9
Q ss_pred ecccccCeEEEEehhhhhhhCCCCCCC
Q psy16417 64 RTPTMAGGLFAIDKDYFYELGSYDEGM 90 (118)
Q Consensus 64 ~sP~maGGlfAi~r~~F~~lGgyD~gm 90 (118)
+.|....+-|-+++..|.+||..|.|-
T Consensus 47 ~Cp~~~~~~lDLS~~aF~~la~~~~G~ 73 (78)
T PF03330_consen 47 RCPGCPPNHLDLSPAAFKALADPDAGV 73 (78)
T ss_dssp E-TTSSSSEEEEEHHHHHHTBSTTCSS
T ss_pred cCCCCcCCEEEeCHHHHHHhCCCCceE
Confidence 567788899999999999999998774
No 64
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=28.63 E-value=33 Score=26.18 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=21.0
Q ss_pred ccCccceeeeee-eeEEEEecCCccc
Q psy16417 92 IWGGENLEMSFR-GKCEIFAYVDKER 116 (118)
Q Consensus 92 iWGgEn~ElSfR-G~ieivPC~~~~~ 116 (118)
.++|+.++..|. ++++|+||.+-.+
T Consensus 147 L~~g~el~~~f~~a~~~v~p~~~gk~ 172 (176)
T PRK03958 147 LFEGKELEREFEDAKLKVVPQERGKR 172 (176)
T ss_pred hcCCcchhhhcCCCeEEEeeccCCce
Confidence 367888999999 9999999987554
No 65
>PF12599 DUF3768: Protein of unknown function (DUF3768); InterPro: IPR022243 This family of proteins is found in bacteria. Proteins in this family are typically between 108 and 129 amino acids in length. There are two conserved sequence motifs: NDP and RVLT.
Probab=24.46 E-value=24 Score=23.87 Aligned_cols=22 Identities=18% Similarity=0.631 Sum_probs=17.9
Q ss_pred ehhhhhhhCCCCCCCcccCccce
Q psy16417 76 DKDYFYELGSYDEGMDIWGGENL 98 (118)
Q Consensus 76 ~r~~F~~lGgyD~gm~iWGgEn~ 98 (118)
.+++|+++--||+.|+ +|-++-
T Consensus 46 g~~vfWKIDyYD~d~~-~gS~dP 67 (84)
T PF12599_consen 46 GEKVFWKIDYYDPDLE-FGSPDP 67 (84)
T ss_pred CEEEEEEEEEEcCccc-cCCCCC
Confidence 3788999999999996 777653
No 66
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.19 E-value=59 Score=24.84 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=21.2
Q ss_pred cccCccceeeeee-eeEEEEecCCc
Q psy16417 91 DIWGGENLEMSFR-GKCEIFAYVDK 114 (118)
Q Consensus 91 ~iWGgEn~ElSfR-G~ieivPC~~~ 114 (118)
+.+.|+.+++.|. ++|.++|-.|-
T Consensus 145 Rl~~G~~l~~~f~~aki~viP~erG 169 (179)
T COG1303 145 RLFEGKELEKEFEDAKIKVIPSERG 169 (179)
T ss_pred HHhCCceeeeecCCceEEEeeHHhC
Confidence 5688999999999 99999998764
Done!