Query psy16417
Match_columns 118
No_of_seqs 118 out of 487
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 20:46:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xhb_A Polypeptide N-acetylgal 99.8 1.1E-20 3.6E-25 153.9 8.5 112 3-114 139-255 (472)
2 2ffu_A Ppgalnact-2, polypeptid 99.8 3.8E-20 1.3E-24 152.3 8.0 113 3-115 171-288 (501)
3 2d7i_A Polypeptide N-acetylgal 99.7 1.9E-18 6.7E-23 145.5 7.0 110 3-115 221-336 (570)
4 2z86_A Chondroitin synthase; G 98.1 7.8E-07 2.7E-11 74.3 2.1 53 62-114 270-327 (625)
5 2fy7_A Beta-1,4-galactosyltran 98.0 1.4E-06 4.9E-11 68.1 1.4 38 66-103 172-209 (287)
6 3lw6_A FI08434P, beta-4-galact 97.8 5.1E-06 1.7E-10 66.2 1.4 38 66-103 156-193 (287)
7 3bcv_A Putative glycosyltransf 96.7 0.00034 1.1E-08 50.4 0.6 44 68-112 171-220 (240)
8 2nxv_A ATP synthase subunits r 96.5 0.0007 2.4E-08 50.6 1.3 48 61-111 146-198 (249)
9 4fix_A UDP-galactofuranosyl tr 95.9 0.0029 1E-07 54.5 2.1 51 62-114 359-414 (657)
10 2z86_A Chondroitin synthase; G 95.4 0.0045 1.5E-07 51.5 1.4 46 65-112 518-567 (625)
11 1qg8_A Protein (spore coat pol 94.3 0.0045 1.5E-07 44.9 -1.2 46 65-112 153-209 (255)
12 4hg6_A Cellulose synthase subu 88.1 0.12 4E-06 45.2 0.6 45 65-112 314-363 (802)
13 3l7i_A Teichoic acid biosynthe 81.5 0.29 1E-05 41.7 0.0 39 69-109 153-197 (729)
14 3ckj_A Putative uncharacterize 78.6 0.47 1.6E-05 36.4 0.3 39 69-112 214-259 (329)
15 2hi6_A UPF0107 protein AF0055; 31.1 24 0.00081 25.0 1.9 46 69-115 14-62 (141)
16 2yy8_A ATRM56, UPF0106 protein 23.9 21 0.00071 26.8 0.5 26 91-116 144-170 (201)
17 2qsd_A Uncharacterized conserv 22.0 12 0.0004 27.8 -1.2 14 77-90 85-98 (187)
18 3lqk_A Dipicolinate synthase s 20.9 34 0.0012 25.0 1.2 35 79-113 62-97 (201)
No 1
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.83 E-value=1.1e-20 Score=153.86 Aligned_cols=112 Identities=72% Similarity=1.300 Sum_probs=102.0
Q ss_pred eeecCCEEEEeccceecccCceeeecCCceeEEEecccceEEEEcChhhhhhcCCCCCCceecccccCeEEEEehhhhhh
Q psy16417 3 HKNDGKTVVCPIIDVISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREMMRRGGDRSSPLRTPTMAGGLFAIDKDYFYE 82 (118)
Q Consensus 3 ~~e~~~~vV~PvID~Id~~tf~y~~~~~~~~ggfdW~L~f~w~~~~~~~~~~~~~~~~~Pi~sP~maGGlfAi~r~~F~~ 82 (118)
+.+++..+|+|.++.|+.++++|.......+|+|+|.+.|+|..++..+...+..+...|+++|+++||+|+|+|++|.+
T Consensus 139 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~ 218 (472)
T 1xhb_A 139 IKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQE 218 (472)
T ss_dssp HHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHH
T ss_pred HHhCCCEEEEeeeeeEcCCCceeccCCCcccceeeccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHHHHHH
Confidence 35688999999999999999999776667899999999999999988776666566677999999999999999999999
Q ss_pred hCCCCCCCcccCccceeeeee-----eeEEEEecCCc
Q psy16417 83 LGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVDK 114 (118)
Q Consensus 83 lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~~ 114 (118)
+|+||++|.+||+||+||++| +++.++||+.+
T Consensus 219 iGgfde~~~~~g~ED~dl~~R~~~~G~~i~~~p~~~v 255 (472)
T 1xhb_A 219 IGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHV 255 (472)
T ss_dssp TTSCCTTSCTTCCCCSHHHHHHHHTTCEEEEEEEEEE
T ss_pred cCCCCCcccccCchhHHHHHHHHhcCCeEEEccCcEE
Confidence 999999999999999999999 79999999976
No 2
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.81 E-value=3.8e-20 Score=152.30 Aligned_cols=113 Identities=49% Similarity=0.887 Sum_probs=101.9
Q ss_pred eeecCCEEEEeccceecccCceeeecCCceeEEEecccceEEEEcChhhhhhcCCCCCCceecccccCeEEEEehhhhhh
Q psy16417 3 HKNDGKTVVCPIIDVISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREMMRRGGDRSSPLRTPTMAGGLFAIDKDYFYE 82 (118)
Q Consensus 3 ~~e~~~~vV~PvID~Id~~tf~y~~~~~~~~ggfdW~L~f~w~~~~~~~~~~~~~~~~~Pi~sP~maGGlfAi~r~~F~~ 82 (118)
+.+++..+|+|.++.|+.++|.|........|+|+|.+.|+|..++..+...+..++..|+++|.++||+++|+|++|.+
T Consensus 171 ~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~ 250 (501)
T 2ffu_A 171 VAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEE 250 (501)
T ss_dssp HHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHHHHH
T ss_pred HHhCCCeEEEeeeccCcCCCceeecCCcccceEeeecCCCccccCCHHHHhhccCCCCCcccCccccceEEEEEHHHHHH
Confidence 34678889999999999999999876666789999999999999988776656556788999999999999999999999
Q ss_pred hCCCCCCCcccCccceeeeee-----eeEEEEecCCcc
Q psy16417 83 LGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVDKE 115 (118)
Q Consensus 83 lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~~~ 115 (118)
+|+||++|.+||+||+||++| +++.++||+.+.
T Consensus 251 iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p~~~v~ 288 (501)
T 2ffu_A 251 LGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVG 288 (501)
T ss_dssp TTCCCTTCCSSSSHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hCCCCccccccCcchHHHHHHHHhcCCeEEEccCcEEE
Confidence 999999999999999999999 799999998763
No 3
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.74 E-value=1.9e-18 Score=145.48 Aligned_cols=110 Identities=43% Similarity=0.923 Sum_probs=95.9
Q ss_pred eeecCCEEEEeccceecccCceeeec-CCceeEEEecccceEEEEcChhhhhhcCCCCCCceecccccCeEEEEehhhhh
Q psy16417 3 HKNDGKTVVCPIIDVISDQTFEYITA-SDMTWGGFNWKLNFRWYRVPPREMMRRGGDRSSPLRTPTMAGGLFAIDKDYFY 81 (118)
Q Consensus 3 ~~e~~~~vV~PvID~Id~~tf~y~~~-~~~~~ggfdW~L~f~w~~~~~~~~~~~~~~~~~Pi~sP~maGGlfAi~r~~F~ 81 (118)
+.+++..+|+|.|+.++.++|.|... ....+++|+|.+.++|..+.... ...++..|+++|+++||+++|+|++|.
T Consensus 221 l~~~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~irr~~~~ 297 (570)
T 2d7i_A 221 IARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPEL---QKADPSDPFESPVMAGGLFAVDRKWFW 297 (570)
T ss_dssp HHHCTTEEEEEEEEEECTTTCCEECCTTSSCEEEECTTCCEEEECCCTTT---CCSSTTSCEECSSCCSSSEEEEHHHHH
T ss_pred HHhCCCEEEeeeeeccCCCchhhccccCCcccccccccccccccccchhh---hccCCCcceecccccceEEEEEHHHHH
Confidence 35688999999999999999999764 45578999999999998766531 123467899999999999999999999
Q ss_pred hhCCCCCCCcccCccceeeeee-----eeEEEEecCCcc
Q psy16417 82 ELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVDKE 115 (118)
Q Consensus 82 ~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~~~ 115 (118)
++|+||++|.+||+||+||++| +++.++||+.+.
T Consensus 298 ~iGgfDe~~~~~g~ED~dl~~Rl~~~G~~i~~~p~~~v~ 336 (570)
T 2d7i_A 298 ELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPCSRVG 336 (570)
T ss_dssp HTTSSCTTCCSSSSHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hcCCCCCcccccCcchHHHHHHHHhCCCeEEEccCeEEE
Confidence 9999999999999999999999 899999999764
No 4
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=98.11 E-value=7.8e-07 Score=74.26 Aligned_cols=53 Identities=25% Similarity=0.436 Sum_probs=47.6
Q ss_pred ceecccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecCCc
Q psy16417 62 PLRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVDK 114 (118)
Q Consensus 62 Pi~sP~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~~ 114 (118)
+...+.+.|++++++|+.|.++||||+.+..||+|+.||++| +++..+|++.+
T Consensus 270 ~~~~~~~~g~~~~~rr~~l~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p~~~v 327 (625)
T 2z86_A 270 NTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREGCYFRSVEGAMA 327 (625)
T ss_dssp SCGGGGCCTTEEEEETHHHHHHCCCCTTCSSCCCHHHHHHHHHHHTTCEEEECGGGCE
T ss_pred CCceeEEeeceeeeEHHHHHHhCCCccccccCCcchhhhhhhHHhCCceEEEcccchh
Confidence 345567899999999999999999999999999999999999 68999998765
No 5
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=97.99 E-value=1.4e-06 Score=68.13 Aligned_cols=38 Identities=26% Similarity=0.488 Sum_probs=35.8
Q ss_pred ccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee
Q psy16417 66 PTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103 (118)
Q Consensus 66 P~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR 103 (118)
....||.++++|+.|.++||||+.+..||+|+.||++|
T Consensus 172 ~~~~G~~~~~rr~~f~~vgGFde~~~g~g~ED~Dl~~R 209 (287)
T 2fy7_A 172 VQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNR 209 (287)
T ss_dssp TTCCCSEEEEEHHHHHHTTSCCSCCSSCSCHHHHHHHH
T ss_pred CceeeeEEEEEHHHHHHcCCCCccccccccchHHHHHH
Confidence 35679999999999999999999999999999999999
No 6
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}
Probab=97.80 E-value=5.1e-06 Score=66.15 Aligned_cols=38 Identities=21% Similarity=0.441 Sum_probs=35.8
Q ss_pred ccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee
Q psy16417 66 PTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103 (118)
Q Consensus 66 P~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR 103 (118)
....||++|+.|+-|.++||||+.+..||+|+.||+.|
T Consensus 156 ~~~~GGv~a~~re~f~kVNGFsn~f~GWGgEDdD~~~R 193 (287)
T 3lw6_A 156 DNFVGGILLVRREHFKQMNGMSNQYWGWGLEDDEFFVR 193 (287)
T ss_dssp TTCCCSEEEEEHHHHHHTTSCCSCCCSSSSHHHHHHHH
T ss_pred CCccccEEeccHHHHHHcCCCCCcCcCCCccchHHHHH
Confidence 34679999999999999999999999999999999988
No 7
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=96.70 E-value=0.00034 Score=50.44 Aligned_cols=44 Identities=5% Similarity=0.042 Sum_probs=36.2
Q ss_pred ccCeEEEEehhhhhhhC-CCCCCCcccCccceeeeee-----eeEEEEecC
Q psy16417 68 MAGGLFAIDKDYFYELG-SYDEGMDIWGGENLEMSFR-----GKCEIFAYV 112 (118)
Q Consensus 68 maGGlfAi~r~~F~~lG-gyD~gm~iWGgEn~ElSfR-----G~ieivPC~ 112 (118)
+.|+.++++|+.|.++| +||+++..+ +|+.++++| +++.++|.+
T Consensus 171 ~~~~~~~~rr~~~~~~g~~f~~~~~~~-~eD~~~~~r~~~~g~~i~~~~~~ 220 (240)
T 3bcv_A 171 VSAKVVLYRRNLIEKKHLRFVSERILP-SEDLIFNVDVLANSNIVCVLPQT 220 (240)
T ss_dssp HTCSCEEEEHHHHHHTTCCCCCTTTCT-THHHHHHHHHHTTCSCEEECC--
T ss_pred cchhheeeeHHHHHHcCCccCCCCCcc-CCCHHHHHHHHHhCCEEEEECCC
Confidence 45778899999999999 999998744 599999999 588888764
No 8
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=96.51 E-value=0.0007 Score=50.60 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=40.1
Q ss_pred CceecccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee----e-eEEEEec
Q psy16417 61 SPLRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR----G-KCEIFAY 111 (118)
Q Consensus 61 ~Pi~sP~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR----G-~ieivPC 111 (118)
.|.+.+...|++++++|+. +||||+.+..|..|++|+++| | ++..+|.
T Consensus 146 ~~~~v~~~~g~~~~~rr~~---~~gFDe~~~~~~~~D~Dl~~R~~~~G~~~~~~p~ 198 (249)
T 2nxv_A 146 VPCRVESLDECFLLMRRLK---PVLNSYDMQGFHYYGADLCLQAEFLGGRAYAIDF 198 (249)
T ss_dssp SSEEEEEECTTEEEEETTB---CCCCCSSCCSSSSHHHHHHHHHHHTTCEEEECCC
T ss_pred CceEcCeeeeEeeEEEHhh---hCCCCCCCCCcceehhHHHHHHHHcCCeEEEecc
Confidence 4566778899999999999 889999988899999999999 5 5666663
No 9
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=95.88 E-value=0.0029 Score=54.48 Aligned_cols=51 Identities=12% Similarity=-0.059 Sum_probs=40.7
Q ss_pred ceecccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecCCc
Q psy16417 62 PLRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYVDK 114 (118)
Q Consensus 62 Pi~sP~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~~~ 114 (118)
++......|.+++|+|+.|.++|+||+ +.+++ |++|+++| .++..+|-+.+
T Consensus 359 ~~~v~~~~g~~~lirr~v~~~vGgfd~-~F~~~-ED~Dl~lR~~~~G~ki~~~p~a~V 414 (657)
T 4fix_A 359 RIDVDYNGWWTCMIPRQVAEELGQPLP-LFIKW-DDADYGLRAAEHGYPTVTLPGAAI 414 (657)
T ss_dssp CCCCSBCCTTEEEEEHHHHHHHCSCCS-CSSSS-HHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred ceeccccchhHhHhhHHHHHHhCCChh-HhccC-cHHHHHHHHHHcCCeEEEECCEEE
Confidence 445667788999999999999999995 44444 99999999 47788876543
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=95.41 E-value=0.0045 Score=51.47 Aligned_cols=46 Identities=7% Similarity=0.194 Sum_probs=40.0
Q ss_pred cccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee----eeEEEEecC
Q psy16417 65 TPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR----GKCEIFAYV 112 (118)
Q Consensus 65 sP~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR----G~ieivPC~ 112 (118)
+..+.|+.++++|+.|.++|+||+.+. ++|+.||++| |++..+|..
T Consensus 518 ~~~~~~~~~~~~r~~~~~~ggfd~~~~--~~eD~dl~~r~~~~g~~~~~~~~ 567 (625)
T 2z86_A 518 SAMICHHFRMFTARAWNLTEGFNESIS--NAVDYDMYLKLSEVGPFKHINKI 567 (625)
T ss_dssp TSCCCCSCEEEEHHHHTTTTCCCSSCS--SCHHHHHHHHHTTTSCEEEEEEE
T ss_pred hcccCCceEEEEHHHHHHhCCCCCccC--ChHHHHHHHHHHHhCCEEEeCCc
Confidence 345677888999999999999999997 6699999999 998888864
No 11
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=94.32 E-value=0.0045 Score=44.93 Aligned_cols=46 Identities=2% Similarity=-0.072 Sum_probs=38.1
Q ss_pred cccccCeEEEEehhhhhhhC-CC------CCCCcccCccceeeeee----eeEEEEecC
Q psy16417 65 TPTMAGGLFAIDKDYFYELG-SY------DEGMDIWGGENLEMSFR----GKCEIFAYV 112 (118)
Q Consensus 65 sP~maGGlfAi~r~~F~~lG-gy------D~gm~iWGgEn~ElSfR----G~ieivPC~ 112 (118)
...+.|+.++++|+.|.++| +| |+.+ +++|+.++++| |++..+|..
T Consensus 153 ~~~~~~~~~~~rr~~~~~~g~~f~~~~~~~~~~--~~~eD~~~~~r~~~~g~~~~~~~~ 209 (255)
T 1qg8_A 153 PCAIDHCSVMHRYSVLEKVKEKFGSYWDESPAF--YRIGDARFFWRVNHFYPFYPLDEE 209 (255)
T ss_dssp TTTSCGGGEEEETHHHHHHHHHHSSSSCCCGGG--STTHHHHHHHHHTTTCCBEEEEEE
T ss_pred cCCCccceEEEEHHHHHhhcccccccccCCccc--chHHHHHHHHHHHHhCCEEEecCc
Confidence 44567788999999999999 89 5555 78999999999 888888765
No 12
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=88.09 E-value=0.12 Score=45.16 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=36.8
Q ss_pred cccccCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----eeEEEEecC
Q psy16417 65 TPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----GKCEIFAYV 112 (118)
Q Consensus 65 sP~maGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G~ieivPC~ 112 (118)
.+...|+.++++|+.|.++||||+..- +||.|+++| .++..+|-+
T Consensus 314 ~~~~~G~~~~~Rr~al~~vGgf~~~~~---~ED~~l~~rl~~~G~ri~~~~~~ 363 (802)
T 4hg6_A 314 GAFFCGSAAVLRRRALDEAGGFAGETI---TEDAETALEIHSRGWKSLYIDRA 363 (802)
T ss_dssp CCCCCSSSEEEEHHHHHHHTTCCCSSS---SHHHHHHHHHHTTTCCEEECCCC
T ss_pred CceecccchhhhHHHHHHcCCcCCCCc---chHHHHHHHHHHcCCeEEEecCC
Confidence 345679999999999999999998763 599999999 466666644
No 13
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=81.49 E-value=0.29 Score=41.73 Aligned_cols=39 Identities=5% Similarity=0.013 Sum_probs=0.0
Q ss_pred cCeEEEEehhhhhhhC-CCCCCCcccCccceeeeee----e-eEEEE
Q psy16417 69 AGGLFAIDKDYFYELG-SYDEGMDIWGGENLEMSFR----G-KCEIF 109 (118)
Q Consensus 69 aGGlfAi~r~~F~~lG-gyD~gm~iWGgEn~ElSfR----G-~ieiv 109 (118)
.++..+++|+.|.++| +||+++. .+|+.++++| | ++..+
T Consensus 153 ~~~~~~~rr~~l~~~gl~fde~~~--~~ED~d~~~rl~~~g~~i~~~ 197 (729)
T 3l7i_A 153 SACNIIFRTAIVRAHHIRFNENLN--TYVDWSFVLEYMKYVNKFVRI 197 (729)
T ss_dssp -----------------------------------------------
T ss_pred chhheeeeHHHHHHcCCCcCCCCC--cccCHHHHHHHHHhcCCEEEe
Confidence 4566899999999999 9999995 3899999999 4 77666
No 14
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=78.59 E-value=0.47 Score=36.40 Aligned_cols=39 Identities=15% Similarity=0.346 Sum_probs=30.9
Q ss_pred cCeEEEEehhhhhhhCCCCCCCcccCccceeeeee-----e--eEEEEecC
Q psy16417 69 AGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-----G--KCEIFAYV 112 (118)
Q Consensus 69 aGGlfAi~r~~F~~lGgyD~gm~iWGgEn~ElSfR-----G--~ieivPC~ 112 (118)
.||.++++|+.|.++| ||+++ + |+.||.+| | .|.-+|..
T Consensus 214 ~~g~~~~rr~~l~~i~-f~~~~---~-~D~~l~~r~~~~~g~~~i~~v~~~ 259 (329)
T 3ckj_A 214 LGGEYAATRELLTSVP-FAPGY---G-VEIGLLVDTFDRLGLDAIAQVNLG 259 (329)
T ss_dssp TCSCEEEEHHHHTTSC-BCCGG---G-HHHHHHHHHHHHHCGGGEEEEEEE
T ss_pred CccceeeeHHHHHhCC-CCCCC---c-ccHHHHHHHHHhcCCccEeeecce
Confidence 5789999999999998 88764 3 99999988 4 36666653
No 15
>2hi6_A UPF0107 protein AF0055; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Archaeoglobus fulgidus} SCOP: c.8.2.3
Probab=31.09 E-value=24 Score=24.95 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=31.7
Q ss_pred cCeEEEEehhhhhhhCCCCCCCcccCccce---eeeeeeeEEEEecCCcc
Q psy16417 69 AGGLFAIDKDYFYELGSYDEGMDIWGGENL---EMSFRGKCEIFAYVDKE 115 (118)
Q Consensus 69 aGGlfAi~r~~F~~lGgyD~gm~iWGgEn~---ElSfRG~ieivPC~~~~ 115 (118)
+-|-..++++-+.-+|+.|+.=-.= -.+= --|++|+|.+.|+++-.
T Consensus 14 a~Ge~Lvs~~~lSF~GgvDp~tG~i-d~~H~L~G~siagkILv~P~gkGS 62 (141)
T 2hi6_A 14 AEGEALVTKEYISFLGGIDKETGIV-KEDCEIKGESVAGRILVFPGGKGS 62 (141)
T ss_dssp EEEEEEECCSCCCTTSCBCTTTCBB-CSCSSSTTCBCTTSEEEESCCSCC
T ss_pred EEEEEEEeCCCceEeeeecCCCCEE-cCCCCcCCCcccCeEEEecCCCCc
Confidence 4456677788777788888654333 2333 34777999999998754
No 16
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=23.85 E-value=21 Score=26.77 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=21.9
Q ss_pred cccCccceeeeee-eeEEEEecCCccc
Q psy16417 91 DIWGGENLEMSFR-GKCEIFAYVDKER 116 (118)
Q Consensus 91 ~iWGgEn~ElSfR-G~ieivPC~~~~~ 116 (118)
+.+.|+.+++.|. +.++|+||.+-.+
T Consensus 144 rl~~G~eL~~ef~~Ak~~ViP~~~GK~ 170 (201)
T 2yy8_A 144 RLLEGKGLKKEFKGAKIKIVPQARGKK 170 (201)
T ss_dssp HHTTTGGGGCCCSSCSEEECCCSSSCC
T ss_pred HhcCCcchhhccCCCcEEEeeccCCCE
Confidence 4578999999999 8999999987543
No 17
>2qsd_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Idiomarina loihiensis}
Probab=21.98 E-value=12 Score=27.82 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=7.1
Q ss_pred hhhhhhhCCCCCCC
Q psy16417 77 KDYFYELGSYDEGM 90 (118)
Q Consensus 77 r~~F~~lGgyD~gm 90 (118)
|-||-.||||+++-
T Consensus 85 kL~FVNlGGY~~~~ 98 (187)
T 2qsd_A 85 RLYFVNFGGYFPNK 98 (187)
T ss_dssp EEEEEECC------
T ss_pred eEEEEEcCCcCCCC
Confidence 77889999999985
No 18
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=20.92 E-value=34 Score=25.01 Aligned_cols=35 Identities=6% Similarity=-0.162 Sum_probs=25.8
Q ss_pred hhhhhCCCCCCCcccCccceeeeee-eeEEEEecCC
Q psy16417 79 YFYELGSYDEGMDIWGGENLEMSFR-GKCEIFAYVD 113 (118)
Q Consensus 79 ~F~~lGgyD~gm~iWGgEn~ElSfR-G~ieivPC~~ 113 (118)
.|..+-+.+.--+.+..+.+++|.+ --+.|.||+-
T Consensus 62 ~l~~l~g~~v~~~~~~~~hi~~s~~aD~mvIaP~Ta 97 (201)
T 3lqk_A 62 KIKQITEEPIVDSMVKAEPFGPKTPLDCMVIAPMTG 97 (201)
T ss_dssp HHHHHCCSCCBCSHHHHGGGTTTSCCSEEEEEEECH
T ss_pred HHHHHhCCCeEeecCcccccccccccCEEEEccCCH
Confidence 5667766554445566788998888 7789999984
Done!