RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16417
(118 letters)
>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of
mucin-type O-linked glycans. UDP-GalNAc: polypeptide
alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T)
initiate the formation of mucin-type, O-linked glycans
by catalyzing the transfer of
alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to
hydroxyl groups of Ser or Thr residues of core proteins
to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These
enzymes are type II membrane proteins with a GT-A type
catalytic domain and a lectin domain located on the
lumen side of the Golgi apparatus. In human, there are
15 isozymes of pp-GalNAc-Ts, representing the largest of
all glycosyltransferase families. Each isozyme has
unique but partially redundant substrate specificity for
glycosylation sites on acceptor proteins.
Length = 299
Score = 159 bits (404), Expect = 1e-49
Identities = 60/100 (60%), Positives = 75/100 (75%), Gaps = 2/100 (2%)
Query: 4 KNDGKTVVCPIIDVISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREMMRRGGDRSSPL 63
+ KTVVCPIIDVI TFEY +S GGF+W L+F+W +P E RR ++P+
Sbjct: 109 AENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEE--RRRESPTAPI 166
Query: 64 RTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103
R+PTMAGGLFAID+++F ELG YDEGMDIWGGENLE+SF+
Sbjct: 167 RSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFK 206
>gnl|CDD|220577 pfam10111, Glyco_tranf_2_2, Glycosyltransferase like family 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferase, which are involved in
bacterial capsule biosynthesis.
Length = 278
Score = 37.8 bits (88), Expect = 4e-04
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 68 MAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103
+A I++D+F ++G +DE GGE+ E+ +R
Sbjct: 165 LASSCILINRDFFLKIGGFDENFRGHGGEDFELLYR 200
>gnl|CDD|151991 pfam11555, Inhibitor_Mig-6, EGFR receptor inhibitor Mig-6. When
the kinase domain of EGFR binds to segment one of
Mitogen induced gene 6 (Mig-6), EGFR becomes inactive
due to the conformation it adopts which is Src/CDK
like. The binding of the two proteins prevents EGFR
acting as a cyclin-like activator for other kinase
domains.The structure of Mig-6(1) consists of alpha
helices-G and -H with a polar surface and hydrophobic
residues for interactions with EGFR. A critical step
for the activation of EGFR is the formation of an
asymmetric dimer involving the kinase domains of the
protein. Since Mig-6 binds to the kinase domain it
blocks this process and EGFR becomes inactive.
Length = 58
Score = 32.2 bits (73), Expect = 0.008
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 46 RVPPREMMRRGGDRS-SPLRTPTMAGGL------FAIDKDY 79
+VPPRE + G R+ SP PT G+ FA D Y
Sbjct: 4 KVPPREPLSPPGSRTPSPKSLPTYPNGVMPTTQSFASDPKY 44
>gnl|CDD|217196 pfam02709, Glyco_transf_7C, N-terminal domain of
galactosyltransferase. This is the N-terminal domain of
a family of galactosyltransferases from a wide range of
Metazoa with three related galactosyltransferases
activities, all three of which are possessed by one
sequence in some cases. EC:2.4.1.90, N-acetyllactosamine
synthase; EC:2.4.1.38,
Beta-N-acetylglucosaminyl-glycopeptide beta-1,4-
galactosyltransferase; and EC:2.4.1.22 Lactose synthase.
Note that N-acetyllactosamine synthase is a component of
Lactose synthase along with alpha-lactalbumin, in the
absence of alpha-lactalbumin EC:2.4.1.90 is the
catalyzed reaction.
Length = 78
Score = 31.0 bits (71), Expect = 0.035
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 10/59 (16%)
Query: 63 LRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMS----------FRGKCEIFAY 111
L GG+ A K+ F ++ + WGGE+ ++ R K I Y
Sbjct: 14 LPYKGYFGGVLAFSKEDFLKVNGFSNNFWGWGGEDDDLYARLLLAGLKIERPKFAIGRY 72
>gnl|CDD|226577 COG4092, COG4092, Predicted glycosyltransferase involved in capsule
biosynthesis [Cell envelope biogenesis, outer membrane].
Length = 346
Score = 31.1 bits (70), Expect = 0.096
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 71 GLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103
+F I++ F G YDE G E+ E R
Sbjct: 180 NIFLINRRMFSLTGGYDERFRGHGSEDFEFLTR 212
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA
oxidases (AXO) catalyze the first set in the peroxisomal
fatty acid beta-oxidation, the alpha,beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. In a second oxidative
half-reaction, the reduced FAD is reoxidized by
molecular oxygen. AXO is generally a homodimer, but it
has been reported to form a different type of oligomer
in yeast. There are several subtypes of AXO's, based on
substrate specificity. Palmitoyl-CoA oxidase acts on
straight-chain fatty acids and prostanoids; whereas, the
closely related Trihydroxycoprostanoly-CoA oxidase has
the greatest activity for 2-methyl branched side chains
of bile precursors. Pristanoyl-CoA oxidase, acts on
2-methyl branched fatty acids. AXO has an additional
domain, C-terminal to the region with similarity to
acyl-CoA dehydrogenases, which is included in this
alignment.
Length = 610
Score = 27.3 bits (61), Expect = 2.0
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 17/86 (19%)
Query: 4 KNDG-KTVVCPIIDVISDQTFEYITASD----MTWGGF-NWKLNFRWYRVPPREMMRRGG 57
KN G + PI D + Q +T D M G N L FR R+P ++ R G
Sbjct: 200 KNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDNGFLQFRNVRIPRENLLNRFG 259
Query: 58 DRS------SPLRTP-----TMAGGL 72
D S SP + P M G
Sbjct: 260 DVSPDGTYVSPFKDPNKRYGAMLGTR 285
>gnl|CDD|180592 PRK06498, PRK06498, isocitrate lyase; Provisional.
Length = 531
Score = 26.9 bits (60), Expect = 2.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 36 FNWKLNFRW 44
FNW LNFR
Sbjct: 385 FNWTLNFRQ 393
>gnl|CDD|129526 TIGR00434, cysH, phosophoadenylyl-sulfate reductase (thioredoxin).
This enzyme, involved in the assimilation of inorganic
sulfate, is designated cysH in Bacteria and MET16 in
Saccharomyces cerevisiae. Synonyms include
phosphoadenosine phosphosulfate reductase, PAPS
reductase, and PAPS reductase, thioredoxin-dependent. In
a reaction requiring reduced thioredoxin and NADPH, it
converts 3(prime)-phosphoadenylylsulfate (PAPS) to
sulfite and adenosine 3(prime),5(prime) diphosphate
(PAP). A related family of plant enzymes, scoring below
the trusted cutoff, differs in having a thioredoxin-like
C-terminal domain, not requiring thioredoxin, and in
having a preference for 5(prime)-adenylylsulfate (APS)
over PAPS [Central intermediary metabolism, Sulfur
metabolism].
Length = 212
Score = 26.7 bits (59), Expect = 3.2
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 11 VCPIIDVISDQTFEYITASDM 31
V P+ID ++YI A ++
Sbjct: 147 VLPLIDWTWKDVYQYIDAHNL 167
>gnl|CDD|216444 pfam01342, SAND, SAND domain. The DNA binding activity of two
proteins has been mapped to the SAND domain. The
conserved KDWK motif is necessary for DNA binding, and
it appears to be important for dimerisation. This
region is also found in the putative transcription
factor RegA from the multicellular green alga Volvox
cateri. This region of RegA is known as the VARL
domain.
Length = 81
Score = 25.7 bits (57), Expect = 3.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 37 NWKLNFRWYRVPPREMMRRGG 57
+WK + R RE+M RGG
Sbjct: 59 DWKRSIRCGGETLRELMERGG 79
>gnl|CDD|237508 PRK13791, PRK13791, lysozyme inhibitor; Provisional.
Length = 113
Score = 25.6 bits (56), Expect = 4.5
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 62 PLRTPTMAGGLF--AIDKDYFYELGSYDEGMDIWGGEN 97
P+R MA G AI+K+Y Y+L + + ++ G++
Sbjct: 66 PMRLMKMASGANYEAINKNYTYKLYTKGKTAELVEGDD 103
>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane
translocase subunit tim17; Provisional.
Length = 164
Score = 25.8 bits (57), Expect = 6.1
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 34 GGFNWKLNFRWYRVPPREMMRRGGDRSSPLRTPTMAGGLFAI 75
GGF W P E GG R P + GG FAI
Sbjct: 29 GGFIWHFLKGMRNSPKGERF-SGGFYLLRKRAPIL-GGNFAI 68
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes
argininosuccinate lyase, but may include examples of
avian delta crystallins, in which argininosuccinate
lyase activity may or may not be present and the
biological role is to provide the optically clear
cellular protein of the eye lens [Amino acid
biosynthesis, Glutamate family].
Length = 455
Score = 25.8 bits (57), Expect = 7.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Query: 50 REMMRRGGDR---------SSPLRTPTMAGGLFAIDKDYFYELGSYD 87
EM+ R +R SPL + +AG F ID++Y EL +D
Sbjct: 171 AEMLLRDYERLQDALKRVNVSPLGSGALAGTGFPIDREYLAELLGFD 217
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 25.8 bits (58), Expect = 7.2
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 17/45 (37%)
Query: 1 MVHKND-------GKTVVCPIID----VISDQTFEYITASDMTWG 34
V+ D GKTV+ P++ +I+D EY+ D +G
Sbjct: 230 AVNPEDERYKHLIGKTVILPLVGREIPIIAD---EYV---DPEFG 268
>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase.
Length = 558
Score = 25.6 bits (56), Expect = 8.1
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 66 PTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFRG-----KCEIFAYVDKER 116
P + G AID D +L S E + I GG + + F G K ++ ++ +++
Sbjct: 231 PDIPGIEHAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK 286
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.141 0.459
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,198,812
Number of extensions: 537067
Number of successful extensions: 392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 21
Length of query: 118
Length of database: 10,937,602
Length adjustment: 81
Effective length of query: 37
Effective length of database: 7,344,928
Effective search space: 271762336
Effective search space used: 271762336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)