RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16417
(118 letters)
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 132 bits (334), Expect = 4e-38
Identities = 52/103 (50%), Positives = 67/103 (65%)
Query: 3 HKNDGKTVVCPIIDVISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREMMRRGGDRSSP 62
D VV PIIDVI+ F+Y+ AS GGF+W L F+W + P + R G+ +P
Sbjct: 171 VAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAP 230
Query: 63 LRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFRGK 105
++TP +AGGLF +DK YF ELG YD MD+WGGENLE+SFR
Sbjct: 231 IKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVW 273
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 131 bits (330), Expect = 9e-38
Identities = 78/101 (77%), Positives = 89/101 (88%)
Query: 3 HKNDGKTVVCPIIDVISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREMMRRGGDRSSP 62
K+D +TVVCPIIDVISD TFEY+ SDMT+GGFNWKLNFRWY VP REM RR GDR+ P
Sbjct: 139 IKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLP 198
Query: 63 LRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103
+RTPTMAGGLF+ID+DYF E+G+YD GMDIWGGENLE+SFR
Sbjct: 199 VRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFR 239
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 117 bits (293), Expect = 3e-32
Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 4/103 (3%)
Query: 3 HKNDGKTVVCPIIDVISDQTFEYITAS-DMTWGGFNWKLNFRWYRVPPREMMRRGGDRSS 61
+ KT+VCP+IDVI F Y T + D G F+W++ ++ +PP + D S
Sbjct: 221 IARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPEL---QKADPSD 277
Query: 62 PLRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFRG 104
P +P MAGGLFA+D+ +F+ELG YD G++IWGGE E+SF+
Sbjct: 278 PFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKV 320
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 35.3 bits (81), Expect = 0.002
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 1/92 (1%)
Query: 13 PIIDVISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREMMRRGGD-RSSPLRTPTMAGG 71
+D +S ++ +T K+ E + + R +GG
Sbjct: 220 TYLDFLSQKSLINEIPEIITNNQVAGKVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSGG 279
Query: 72 LFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103
A K + + G +DE WGGE+ E +R
Sbjct: 280 NVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYR 311
Score = 26.1 bits (57), Expect = 3.9
Identities = 5/53 (9%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 63 LRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR-GKCEIFAYVDK 114
L + + + ++E + + +M + + F +++K
Sbjct: 516 LTSAMICHHFRMFTARAWNLTEGFNESIS--NAVDYDMYLKLSEVGPFKHINK 566
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.10
Identities = 22/159 (13%), Positives = 45/159 (28%), Gaps = 50/159 (31%)
Query: 8 KTVV----CPIIDVISDQTFEYITASDMTWGGF----------NWKLNFRWYRVPPR--- 50
K ++ + D +S T +I+ + + L+ R +P
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKY-LDCRPQDLPREVLT 324
Query: 51 ----------EMMRRGGDRSSPLR-------TPTMAGGLFAID----KDYFYELGSYDEG 89
E +R G + T + L ++ + F L +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 90 MDI--------WGG--ENLEMSFRGKCEIFAYVDKERTE 118
I W ++ M K ++ V+K+ E
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 1.3
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 10/44 (22%)
Query: 50 REMMRRGGDR--SSPLRTPTMAG--GLFAI------DKDYFYEL 83
R M +R D+ +S L G L AI DYF EL
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex,
glycosyltransferase; HET: UDP; 1.81A {Drosophila
melanogaster}
Length = 287
Score = 26.3 bits (57), Expect = 2.8
Identities = 10/65 (15%), Positives = 19/65 (29%)
Query: 39 KLNFRWYRVPPREMMRRGGDRSSPLRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENL 98
Y + G GG+ + +++F ++ WG E+
Sbjct: 129 DNLLYEYPSSLGPLHIAGPKLHPKYHYDNFVGGILLVRREHFKQMNGMSNQYWGWGLEDD 188
Query: 99 EMSFR 103
E R
Sbjct: 189 EFFVR 193
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET:
PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A*
2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A*
1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B*
1nkh_B* 1nqi_B* 1nwg_B* ...
Length = 287
Score = 26.0 bits (56), Expect = 3.6
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 66 PTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEM 100
GG+ A+ K F + + WGGE+ ++
Sbjct: 172 VQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDI 206
>3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta
hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris}
PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A
Length = 306
Score = 25.7 bits (57), Expect = 3.8
Identities = 4/36 (11%), Positives = 10/36 (27%), Gaps = 3/36 (8%)
Query: 34 GGFNWKLNFRWYRVPPREMMRRGGDRSSPLRTPTMA 69
+R E + + + + P +A
Sbjct: 216 VMCED---YRAGAYADFEHDKIDVEAGNKIPVPMLA 248
>3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase;
1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A
3pi6_A
Length = 301
Score = 24.9 bits (55), Expect = 7.7
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 42 FRWYRVPPREMMRRGGDRSSPLRTPTMA 69
F +YR + + + L+ PTM
Sbjct: 212 FEYYRALNESVRQNAELAKTRLQMPTMT 239
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 24.8 bits (54), Expect = 9.8
Identities = 3/38 (7%), Positives = 10/38 (26%), Gaps = 10/38 (26%)
Query: 53 MRRGGDRSSPLRTP----TMAGGLFAIDKDYFYELGSY 86
+ + + TM+ + + + S
Sbjct: 1065 RFKDEPVQNDILQESFINTMSAWVNML------LISSS 1096
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.459
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,962,729
Number of extensions: 108913
Number of successful extensions: 224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 13
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)