RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16417
         (118 letters)



>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
           N-acetylgalactosaminyltransferase 1, N-terminal domain
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 328

 Score = 85.8 bits (211), Expect = 8e-22
 Identities = 78/103 (75%), Positives = 89/103 (86%)

Query: 4   KNDGKTVVCPIIDVISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREMMRRGGDRSSPL 63
           K+D +TVVCPIIDVISD TFEY+  SDMT+GGFNWKLNFRWY VP REM RR GDR+ P+
Sbjct: 133 KHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPV 192

Query: 64  RTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFRGKC 106
           RTPTMAGGLF+ID+DYF E+G+YD GMDIWGGENLE+SFR   
Sbjct: 193 RTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQ 235


>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 271

 Score = 25.7 bits (56), Expect = 1.3
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 5/101 (4%)

Query: 5   NDGKTVVCPIIDVISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREM-MRRGGDRSSP- 62
           N  K +     + + D  +     SD+         +   YR   +   +    D+    
Sbjct: 96  NRAKLLNVGFKEALKDYDYNCFVFSDVD---LIPMNDHNTYRCFSQPRHISVAMDKFGFS 152

Query: 63  LRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFR 103
           L      GG+ A+ K  F  +  +       GGE+ ++  R
Sbjct: 153 LPYVQYFGGVSALSKQQFLSINGFPNNYWGAGGEDDDIYNR 193


>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable
           domain, VH {Human (Homo sapiens), cluster 3 [TaxId:
           9606]}
          Length = 126

 Score = 24.3 bits (52), Expect = 3.9
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 73  FAIDKDYFYELGSYDEGMDIWG 94
               +DY+   G +    DIWG
Sbjct: 96  CVKGRDYYDSGGYFTVAFDIWG 117


>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable
           domain, VH {Human (Homo sapiens), cluster 3 [TaxId:
           9606]}
          Length = 127

 Score = 23.9 bits (51), Expect = 4.6
 Identities = 8/32 (25%), Positives = 11/32 (34%)

Query: 63  LRTPTMAGGLFAIDKDYFYELGSYDEGMDIWG 94
           LR         A D  + +   +   G D WG
Sbjct: 86  LRPEDTGVYFCARDGGHGFCSSASCFGPDYWG 117


>d1y0ka1 c.52.1.31 (A:1-209) Hypothetical protein PA4535
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 209

 Score = 23.8 bits (51), Expect = 5.5
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 48  PPREMMRRGGDRSSPLRTPTMAGGLFA 74
           PP E +R+G  RS  +  PT A  LFA
Sbjct: 160 PPTEYLRQGW-RSLSMVGPTFARVLFA 185


>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase
           {Escherichia coli [TaxId: 562]}
          Length = 215

 Score = 23.5 bits (50), Expect = 7.7
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 1   MVHKNDGKTVVCPIIDVISDQTFEYITASD 30
           ++    G   V PIID  +   ++Y+    
Sbjct: 168 VLAIQRGVFKVLPIIDWDNRTIYQYLQKHG 197


>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable
           domain, VH {Human (Homo sapiens), cluster 1 [TaxId:
           9606]}
          Length = 133

 Score = 23.2 bits (49), Expect = 8.0
 Identities = 8/17 (47%), Positives = 9/17 (52%)

Query: 78  DYFYELGSYDEGMDIWG 94
           DY    G Y   MD+WG
Sbjct: 108 DYADYDGGYYYDMDVWG 124


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.141    0.459 

Gapped
Lambda     K      H
   0.267   0.0519    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 497,706
Number of extensions: 22146
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 9
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)