BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16419
(346 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|383848340|ref|XP_003699809.1| PREDICTED: RNA-binding protein lark-like [Megachile rotundata]
Length = 351
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 93/142 (65%), Positives = 112/142 (78%), Gaps = 2/142 (1%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HMEN+E GR AI+ LNGQIV+ +P+K EAA SRKGPNTPTTK+FVGNL+DNT+AP+VREL
Sbjct: 49 HMENEEAGRNAIQNLNGQIVHGQPIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVREL 108
Query: 65 FVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YGTVVECDIVRNYGFVH+++ D+N IKELNG MVDG+PMKV ++ +
Sbjct: 109 FAKYGTVVECDIVRNYGFVHLEATGDVNDAIKELNGQMVDGQPMKVQISTSRVRQRPGMG 168
Query: 123 NVIFFIRCGRGGHWSKECPRAG 144
+ RCGRGGHWSKECP+ G
Sbjct: 169 DPEQCYRCGRGGHWSKECPKGG 190
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/48 (83%), Positives = 42/48 (87%)
Query: 299 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MPGFSSVGTFKIFIGN+ TS I+PLFEKYGKVVECDVVKNYGFV
Sbjct: 1 MPGFSSVGTFKIFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFV 48
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 110/224 (49%), Gaps = 25/224 (11%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMV 102
T K+F+GNL+D T +++ LF YG VVECD+V+NYGFVH+++ + + I+ LNG +V
Sbjct: 9 TFKIFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNGQIV 68
Query: 103 DGKPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKS---KSSH 159
G+P+K A + IF G +K F G + ++
Sbjct: 69 HGQPIKCEAAKSRKGPNTPTTKIF---VGNLTDNTKAPQVRELFAKYGTVVECDIVRNYG 125
Query: 160 KIYQDALVLWED--QDLWTGLVKGTSDLVVVIASPIHQ--AHCDSFLC--CSR------- 206
++ +A D ++L +V G V + S + Q D C C R
Sbjct: 126 FVHLEATGDVNDAIKELNGQMVDGQPMKVQISTSRVRQRPGMGDPEQCYRCGRGGHWSKE 185
Query: 207 --RFGAVGGPGPLDRFGYPREAYPRDPYPPPPPPSFLRDRMMGG 248
+ G GGP DR GY + RDPYPPPPPP FLRDR+MGG
Sbjct: 186 CPKGGMGGGP---DRNGYRDRMFGRDPYPPPPPPPFLRDRLMGG 226
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T KIF+GN+ T +R LF KYG VVECD+V+NYGFV
Sbjct: 88 TTKIFVGNLTDNTKAPQVRELFAKYGTVVECDIVRNYGFV 127
>gi|350416927|ref|XP_003491172.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein lark-like
[Bombus impatiens]
Length = 458
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 92/142 (64%), Positives = 111/142 (78%), Gaps = 2/142 (1%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HMEN+E GR AI+ LNG IV+ +P+K EAA SRKGPNTPTTK+FVGNL+DNT+AP+VREL
Sbjct: 143 HMENEEAGRNAIQNLNGHIVHGQPIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVREL 202
Query: 65 FVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YGTVVECDIVRNYGFVH+++ D+N IKELNG MVDG+PMKV ++ +
Sbjct: 203 FAKYGTVVECDIVRNYGFVHLEATGDVNDAIKELNGQMVDGQPMKVQISTSRVRQRPGMG 262
Query: 123 NVIFFIRCGRGGHWSKECPRAG 144
+ RCGRGGHWSKECP+ G
Sbjct: 263 DPEQCYRCGRGGHWSKECPKGG 284
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/48 (83%), Positives = 42/48 (87%)
Query: 299 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MPGFSSVGTFKIFIGN+ TS I+PLFEKYGKVVECDVVKNYGFV
Sbjct: 95 MPGFSSVGTFKIFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFV 142
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 110/224 (49%), Gaps = 25/224 (11%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMV 102
T K+F+GNL+D T +++ LF YG VVECD+V+NYGFVH+++ + + I+ LNG +V
Sbjct: 103 TFKIFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNGHIV 162
Query: 103 DGKPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKS---KSSH 159
G+P+K A + IF G +K F G + ++
Sbjct: 163 HGQPIKCEAAKSRKGPNTPTTKIF---VGNLTDNTKAPQVRELFAKYGTVVECDIVRNYG 219
Query: 160 KIYQDALVLWED--QDLWTGLVKGTSDLVVVIASPIHQ--AHCDSFLC--CSR------- 206
++ +A D ++L +V G V + S + Q D C C R
Sbjct: 220 FVHLEATGDVNDAIKELNGQMVDGQPMKVQISTSRVRQRPGMGDPEQCYRCGRGGHWSKE 279
Query: 207 --RFGAVGGPGPLDRFGYPREAYPRDPYPPPPPPSFLRDRMMGG 248
+ G GGP DR GY + RDPYPPPPPP FLRDR+MGG
Sbjct: 280 CPKGGMGGGP---DRNGYRDRMFGRDPYPPPPPPPFLRDRLMGG 320
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T KIF+GN+ T +R LF KYG VVECD+V+NYGFV
Sbjct: 182 TTKIFVGNLTDNTKAPQVRELFAKYGTVVECDIVRNYGFV 221
>gi|332031363|gb|EGI70876.1| RNA-binding protein lark [Acromyrmex echinatior]
Length = 355
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 90/142 (63%), Positives = 111/142 (78%), Gaps = 2/142 (1%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HMEN+E GR AI+ LNG +V+ +P+K EAA SRKGPNTPTTK+FVGNL+DNT+AP+VREL
Sbjct: 49 HMENEEAGRNAIQNLNGHMVHGQPIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVREL 108
Query: 65 FVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YGTVVECDIVRNYGFVH+++ D+N IKELNG +VDG+PMKV ++ +
Sbjct: 109 FAKYGTVVECDIVRNYGFVHLEATGDVNDAIKELNGQIVDGQPMKVQISTSRVRQRPGMG 168
Query: 123 NVIFFIRCGRGGHWSKECPRAG 144
+ RCGRGGHWSKECP+ G
Sbjct: 169 DPEQCYRCGRGGHWSKECPKGG 190
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/48 (83%), Positives = 42/48 (87%)
Query: 299 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MPGFSSVGTFKIFIGN+ TS I+PLFEKYGKVVECDVVKNYGFV
Sbjct: 1 MPGFSSVGTFKIFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFV 48
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 113/235 (48%), Gaps = 47/235 (20%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMV 102
T K+F+GNL+D T +++ LF YG VVECD+V+NYGFVH+++ + + I+ LNG MV
Sbjct: 9 TFKIFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNGHMV 68
Query: 103 DGKPMKVVVAG------------FISSILSCLNV----IFFIRCGRGGHWSKECPRAGNF 146
G+P+K A F+ ++ F + G EC N+
Sbjct: 69 HGQPIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVRELFAKYG----TVVECDIVRNY 124
Query: 147 RSSGCYCKSKSSHKIYQDALVLWEDQDLWTGLVKGTSDLVVVIASPIHQ--AHCDSFLC- 203
+ +++ + DA+ ++L +V G V + S + Q D C
Sbjct: 125 ----GFVHLEATGDV-NDAI-----KELNGQIVDGQPMKVQISTSRVRQRPGMGDPEQCY 174
Query: 204 -CSR---------RFGAVGGPGPLDRFGYPREAYPRDPYPPPPPPSFLRDRMMGG 248
C R + G GGP DR GY + RDPYPPPPPP FLRDR+MGG
Sbjct: 175 RCGRGGHWSKECPKGGMGGGP---DRNGYRDRMFGRDPYPPPPPPPFLRDRLMGG 226
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T KIF+GN+ T +R LF KYG VVECD+V+NYGFV
Sbjct: 88 TTKIFVGNLTDNTKAPQVRELFAKYGTVVECDIVRNYGFV 127
>gi|322797564|gb|EFZ19608.1| hypothetical protein SINV_13630 [Solenopsis invicta]
Length = 324
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 90/142 (63%), Positives = 111/142 (78%), Gaps = 2/142 (1%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HMEN+E GR AI+ LNG +V+ +P+K EAA SRKGPNTPTTK+FVGNL+DNT+AP+VREL
Sbjct: 49 HMENEEAGRNAIQNLNGHMVHGQPIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVREL 108
Query: 65 FVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YGTVVECDIVRNYGFVH+++ D+N IKELNG +VDG+PMKV ++ +
Sbjct: 109 FAKYGTVVECDIVRNYGFVHLEATGDVNDAIKELNGQIVDGQPMKVQISTSRVRQRPGMG 168
Query: 123 NVIFFIRCGRGGHWSKECPRAG 144
+ RCGRGGHWSKECP+ G
Sbjct: 169 DPEQCYRCGRGGHWSKECPKGG 190
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/48 (83%), Positives = 42/48 (87%)
Query: 299 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MPGFSSVGTFKIFIGN+ TS I+PLFEKYGKVVECDVVKNYGFV
Sbjct: 1 MPGFSSVGTFKIFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFV 48
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 110/224 (49%), Gaps = 25/224 (11%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMV 102
T K+F+GNL+D T +++ LF YG VVECD+V+NYGFVH+++ + + I+ LNG MV
Sbjct: 9 TFKIFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNGHMV 68
Query: 103 DGKPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKS---KSSH 159
G+P+K A + IF G +K F G + ++
Sbjct: 69 HGQPIKCEAAKSRKGPNTPTTKIF---VGNLTDNTKAPQVRELFAKYGTVVECDIVRNYG 125
Query: 160 KIYQDALVLWED--QDLWTGLVKGTSDLVVVIASPIHQ--AHCDSFLC--CSR------- 206
++ +A D ++L +V G V + S + Q D C C R
Sbjct: 126 FVHLEATGDVNDAIKELNGQIVDGQPMKVQISTSRVRQRPGMGDPEQCYRCGRGGHWSKE 185
Query: 207 --RFGAVGGPGPLDRFGYPREAYPRDPYPPPPPPSFLRDRMMGG 248
+ G GGP DR GY + RDPYPPPPPP FLRDR+MGG
Sbjct: 186 CPKGGMGGGP---DRNGYRDRMFGRDPYPPPPPPPFLRDRLMGG 226
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T KIF+GN+ T +R LF KYG VVECD+V+NYGFV
Sbjct: 88 TTKIFVGNLTDNTKAPQVRELFAKYGTVVECDIVRNYGFV 127
>gi|307187784|gb|EFN72750.1| RNA-binding protein lark [Camponotus floridanus]
Length = 331
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 90/142 (63%), Positives = 111/142 (78%), Gaps = 2/142 (1%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HMEN+E GR AI+ LNG +V+ +P+K EAA SRKGPNTPTTK+FVGNL+DNT+AP+VREL
Sbjct: 49 HMENEEAGRNAIQNLNGHMVHGQPIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVREL 108
Query: 65 FVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YGTVVECDIVRNYGFVH+++ D+N IKELNG +VDG+PMKV ++ +
Sbjct: 109 FAKYGTVVECDIVRNYGFVHLEATGDVNDAIKELNGQIVDGQPMKVQISTSRVRQRPGMG 168
Query: 123 NVIFFIRCGRGGHWSKECPRAG 144
+ RCGRGGHWSKECP+ G
Sbjct: 169 DPEQCYRCGRGGHWSKECPKGG 190
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/48 (83%), Positives = 42/48 (87%)
Query: 299 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MPGFSSVGTFKIFIGN+ TS I+PLFEKYGKVVECDVVKNYGFV
Sbjct: 1 MPGFSSVGTFKIFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFV 48
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 110/224 (49%), Gaps = 25/224 (11%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMV 102
T K+F+GNL+D T +++ LF YG VVECD+V+NYGFVH+++ + + I+ LNG MV
Sbjct: 9 TFKIFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNGHMV 68
Query: 103 DGKPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKS---KSSH 159
G+P+K A + IF G +K F G + ++
Sbjct: 69 HGQPIKCEAAKSRKGPNTPTTKIF---VGNLTDNTKAPQVRELFAKYGTVVECDIVRNYG 125
Query: 160 KIYQDALVLWED--QDLWTGLVKGTSDLVVVIASPIHQ--AHCDSFLC--CSR------- 206
++ +A D ++L +V G V + S + Q D C C R
Sbjct: 126 FVHLEATGDVNDAIKELNGQIVDGQPMKVQISTSRVRQRPGMGDPEQCYRCGRGGHWSKE 185
Query: 207 --RFGAVGGPGPLDRFGYPREAYPRDPYPPPPPPSFLRDRMMGG 248
+ G GGP DR GY + RDPYPPPPPP FLRDR+MGG
Sbjct: 186 CPKGGMGGGP---DRNGYRDRMFGRDPYPPPPPPPFLRDRLMGG 226
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T KIF+GN+ T +R LF KYG VVECD+V+NYGFV
Sbjct: 88 TTKIFVGNLTDNTKAPQVRELFAKYGTVVECDIVRNYGFV 127
>gi|307195687|gb|EFN77529.1| RNA-binding protein lark [Harpegnathos saltator]
Length = 325
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 90/142 (63%), Positives = 111/142 (78%), Gaps = 2/142 (1%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HMEN+E GR AI+ LNG +V+ +P+K EAA SRKGPNTPTTK+FVGNL+DNT+AP+VREL
Sbjct: 49 HMENEEAGRNAIQNLNGHMVHGQPIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVREL 108
Query: 65 FVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YGTVVECDIVRNYGFVH+++ D+N IKELNG +VDG+PMKV ++ +
Sbjct: 109 FAKYGTVVECDIVRNYGFVHLEATGDVNDAIKELNGQIVDGQPMKVQISTSRVRQRPGMG 168
Query: 123 NVIFFIRCGRGGHWSKECPRAG 144
+ RCGRGGHWSKECP+ G
Sbjct: 169 DPEQCYRCGRGGHWSKECPKGG 190
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/48 (83%), Positives = 42/48 (87%)
Query: 299 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MPGFSSVGTFKIFIGN+ TS I+PLFEKYGKVVECDVVKNYGFV
Sbjct: 1 MPGFSSVGTFKIFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFV 48
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 110/224 (49%), Gaps = 25/224 (11%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMV 102
T K+F+GNL+D T +++ LF YG VVECD+V+NYGFVH+++ + + I+ LNG MV
Sbjct: 9 TFKIFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNGHMV 68
Query: 103 DGKPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKS---KSSH 159
G+P+K A + IF G +K F G + ++
Sbjct: 69 HGQPIKCEAAKSRKGPNTPTTKIF---VGNLTDNTKAPQVRELFAKYGTVVECDIVRNYG 125
Query: 160 KIYQDALVLWED--QDLWTGLVKGTSDLVVVIASPIHQ--AHCDSFLC--CSR------- 206
++ +A D ++L +V G V + S + Q D C C R
Sbjct: 126 FVHLEATGDVNDAIKELNGQIVDGQPMKVQISTSRVRQRPGMGDPEQCYRCGRGGHWSKE 185
Query: 207 --RFGAVGGPGPLDRFGYPREAYPRDPYPPPPPPSFLRDRMMGG 248
+ G GGP DR GY + RDPYPPPPPP FLRDR+MGG
Sbjct: 186 CPKGGMGGGP---DRNGYRDRMFGRDPYPPPPPPPFLRDRLMGG 226
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T KIF+GN+ T +R LF KYG VVECD+V+NYGFV
Sbjct: 88 TTKIFVGNLTDNTKAPQVRELFAKYGTVVECDIVRNYGFV 127
>gi|345493962|ref|XP_003427189.1| PREDICTED: RNA-binding protein lark-like [Nasonia vitripennis]
Length = 382
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 90/141 (63%), Positives = 111/141 (78%), Gaps = 2/141 (1%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 65
MEN+E GR AI+ LNGQ+V+ +P+K EAA SRKGPNTPTTK+FVGNL+DNT+AP+VRELF
Sbjct: 1 MENEESGRNAIQNLNGQLVHGQPIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVRELF 60
Query: 66 VPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA-GFISSILSCLN 123
YGTVVECDIVRNYGFVH+++ D+N IKELNG +VDG+PMKV ++ + +
Sbjct: 61 AKYGTVVECDIVRNYGFVHLEATGDVNDAIKELNGQIVDGQPMKVQISTSRVRQRPGMGD 120
Query: 124 VIFFIRCGRGGHWSKECPRAG 144
RCGRGGHWSKECP+ G
Sbjct: 121 PEQCYRCGRGGHWSKECPKGG 141
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T KIF+GN+ T +R LF KYG VVECD+V+NYGFV
Sbjct: 39 TTKIFVGNLTDNTKAPQVRELFAKYGTVVECDIVRNYGFV 78
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 37
H+E + AIKELNGQIV+ +P+K++ +TSR
Sbjct: 79 HLEATGDVNDAIKELNGQIVDGQPMKVQISTSR 111
>gi|357621997|gb|EHJ73625.1| RNA-binding protein lark [Danaus plexippus]
Length = 341
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/141 (64%), Positives = 112/141 (79%), Gaps = 2/141 (1%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HMEN++ GR AI+ LNG++V+ + +KIEAA SRK P+TPTTK+FVGNL+D TRAPEVREL
Sbjct: 46 HMENEQVGREAIQNLNGEVVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVREL 105
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F +GTVVECDIVRNYGFVH+D S D+N+ IKELNGMMVDG+PMKV ++ +
Sbjct: 106 FQKFGTVVECDIVRNYGFVHLDASGDVNEAIKELNGMMVDGQPMKVQLSTSRVRQRPGMG 165
Query: 123 NVIFFIRCGRGGHWSKECPRA 143
+ RCGRGGHWSKECP+A
Sbjct: 166 DPEQCYRCGRGGHWSKECPKA 186
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 103/223 (46%), Gaps = 16/223 (7%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELN 98
P T K+FVGNLSD T ++R LF +GTVVECDIVRNYGFVH+++ + + I+ LN
Sbjct: 2 PGAGTFKIFVGNLSDKTTDADLRPLFEKFGTVVECDIVRNYGFVHMENEQVGREAIQNLN 61
Query: 99 GMMVDGKPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSK------------ECPRAGNF 146
G +V G+ +K+ A + + IF + EC N+
Sbjct: 62 GEVVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY 121
Query: 147 RSSGCYCKSKSSHKIYQDALVLWEDQDLWTGLVKGTSDLVVVIASPIHQAHCDSFLCCSR 206
+ I + ++ + Q + L + P C S+
Sbjct: 122 GFVHLDASGDVNEAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSK 181
Query: 207 RFGAVGGPGPLDRFGYPREAYPRDPYPPPPPPSFLRDRMMGGY 249
GP DR G+ A+ RDPYPPPPPP FLRDRMMGG+
Sbjct: 182 ECPKAMGP---DRNGFRDRAFGRDPYPPPPPPPFLRDRMMGGF 221
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 38/48 (79%), Gaps = 3/48 (6%)
Query: 299 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MPG GTFKIF+GN++ T+ +RPLFEK+G VVECD+V+NYGFV
Sbjct: 1 MPG---AGTFKIFVGNLSDKTTDADLRPLFEKFGTVVECDIVRNYGFV 45
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 36/58 (62%)
Query: 289 GTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G + IEA S T KIF+GN+ T +R LF+K+G VVECD+V+NYGFV
Sbjct: 67 GQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFV 124
>gi|91088839|ref|XP_970745.1| PREDICTED: similar to lark CG8597-PA [Tribolium castaneum]
gi|270012337|gb|EFA08785.1| hypothetical protein TcasGA2_TC006476 [Tribolium castaneum]
Length = 358
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 88/141 (62%), Positives = 109/141 (77%), Gaps = 2/141 (1%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HMEN+ EGR AI+ LNG ++N +P+K EAA SRK P TPTTK+FVGNL+DNT+AP++REL
Sbjct: 49 HMENESEGREAIQNLNGHMLNGQPMKCEAAKSRKAPQTPTTKIFVGNLTDNTKAPQIREL 108
Query: 65 FVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YGTVVECDIVRNYGFVH++S D+N+ IKELNG +VDG+PMKV V+ +
Sbjct: 109 FKKYGTVVECDIVRNYGFVHLESSGDVNEAIKELNGTLVDGQPMKVQVSTSRVRQRPGMG 168
Query: 123 NVIFFIRCGRGGHWSKECPRA 143
+ RCGRGGHWSKECP+
Sbjct: 169 DPEQCYRCGRGGHWSKECPKG 189
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 42/48 (87%)
Query: 299 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MPGFSS GTFKIFIGN+ T+V +RPLFEKYGKVVECDVVKNYGFV
Sbjct: 1 MPGFSSAGTFKIFIGNLAEKTAVTDLRPLFEKYGKVVECDVVKNYGFV 48
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMV 102
T K+F+GNL++ T ++R LF YG VVECD+V+NYGFVH+++ + + I+ LNG M+
Sbjct: 9 TFKIFIGNLAEKTAVTDLRPLFEKYGKVVECDVVKNYGFVHMENESEGREAIQNLNGHML 68
Query: 103 DGKPMKVVVA 112
+G+PMK A
Sbjct: 69 NGQPMKCEAA 78
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 30/40 (75%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T KIF+GN+ T IR LF+KYG VVECD+V+NYGFV
Sbjct: 88 TTKIFVGNLTDNTKAPQIRELFKKYGTVVECDIVRNYGFV 127
>gi|112983834|ref|NP_001037293.1| RNA-binding protein lark [Bombyx mori]
gi|57236850|gb|AAW48898.1| lark-PA [Bombyx mori]
Length = 343
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 90/141 (63%), Positives = 111/141 (78%), Gaps = 2/141 (1%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HMEN++ GR AI+ LNG++V+ + +KIEAA SRK P+TPTTK+FVGNL+D TRAPEVREL
Sbjct: 46 HMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVREL 105
Query: 65 FVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F +GTVVECDIVRNYGFVH+D+ D+N IKELNGMMVDG+PMKV ++ +
Sbjct: 106 FQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMG 165
Query: 123 NVIFFIRCGRGGHWSKECPRA 143
+ RCGRGGHWSKECP+A
Sbjct: 166 DPEQCYRCGRGGHWSKECPKA 186
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 113/226 (50%), Gaps = 22/226 (9%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELN 98
P T T K+F+GNLSD T ++R LF YGTVVECDIVRNYGFVH+++ + + I+ LN
Sbjct: 2 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLN 61
Query: 99 GMMVDGKPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKS--- 155
G +V G+ +K+ A + + IF G ++ F+ G +
Sbjct: 62 GELVHGQAIKIEAAKSRKAPSTPTTKIF---VGNLTDKTRAPEVRELFQKFGTVVECDIV 118
Query: 156 KSSHKIYQDALVLWED--QDLWTGLVKGTSDLVVVIASPIHQA----------HCDSFLC 203
++ ++ DA D ++L +V G V + S + Q C
Sbjct: 119 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGH 178
Query: 204 CSRRFGAVGGPGPLDRFGYPREAYPRDPYPPPPPPSFLRDRMMGGY 249
S+ GP DR G+ A+ RDPYPPPPPP FLRDRMMGG+
Sbjct: 179 WSKECPKALGP---DRNGFRDRAFGRDPYPPPPPPPFLRDRMMGGF 221
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 38/48 (79%), Gaps = 3/48 (6%)
Query: 299 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MPG GTFKIFIGN++ T+ +RPLFEKYG VVECD+V+NYGFV
Sbjct: 1 MPG---TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFV 45
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 36/58 (62%)
Query: 289 GTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G + IEA S T KIF+GN+ T +R LF+K+G VVECD+V+NYGFV
Sbjct: 67 GQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFV 124
>gi|380021805|ref|XP_003694747.1| PREDICTED: RNA-binding protein lark-like [Apis florea]
Length = 351
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 90/142 (63%), Positives = 109/142 (76%), Gaps = 2/142 (1%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HMEN+E GR AI+ LNG IV+ + +K EAA SRKGPNTPTTK+FVGNL+DNT+AP+VREL
Sbjct: 49 HMENEEAGRNAIQNLNGHIVHGQEIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVREL 108
Query: 65 FVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YGTVVECDIVRNYGFVH+++ D+N IKELNG MVDG+ MKV ++ +
Sbjct: 109 FAKYGTVVECDIVRNYGFVHLEATGDVNDAIKELNGRMVDGQAMKVQISTSRVRQRPGMG 168
Query: 123 NVIFFIRCGRGGHWSKECPRAG 144
+ RCGRGGHWSKECP+ G
Sbjct: 169 DPEQCYRCGRGGHWSKECPKGG 190
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 42/48 (87%)
Query: 299 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MPGFSSVGTFKIFIGN+ T+ I+PLFEKYGKVVECDVVKNYGFV
Sbjct: 1 MPGFSSVGTFKIFIGNLADKTTNADIKPLFEKYGKVVECDVVKNYGFV 48
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 113/235 (48%), Gaps = 47/235 (20%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMV 102
T K+F+GNL+D T +++ LF YG VVECD+V+NYGFVH+++ + + I+ LNG +V
Sbjct: 9 TFKIFIGNLADKTTNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNGHIV 68
Query: 103 DGKPMKVVVAG------------FISSILSCLNV----IFFIRCGRGGHWSKECPRAGNF 146
G+ +K A F+ ++ F + G EC N+
Sbjct: 69 HGQEIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVRELFAKYG----TVVECDIVRNY 124
Query: 147 RSSGCYCKSKSSHKIYQDALVLWEDQDLWTGLVKGTSDLVVVIASPIHQ--AHCDSFLC- 203
+ +++ + DA+ ++L +V G + V + S + Q D C
Sbjct: 125 ----GFVHLEATGDV-NDAI-----KELNGRMVDGQAMKVQISTSRVRQRPGMGDPEQCY 174
Query: 204 -CSR---------RFGAVGGPGPLDRFGYPREAYPRDPYPPPPPPSFLRDRMMGG 248
C R + G GGP DR GY + RDPYPPPPPP FLRDR+MGG
Sbjct: 175 RCGRGGHWSKECPKGGMGGGP---DRNGYRDRMFGRDPYPPPPPPPFLRDRLMGG 226
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T KIF+GN+ T +R LF KYG VVECD+V+NYGFV
Sbjct: 88 TTKIFVGNLTDNTKAPQVRELFAKYGTVVECDIVRNYGFV 127
>gi|328786023|ref|XP_623841.3| PREDICTED: RNA-binding protein lark-like isoform 1 [Apis mellifera]
Length = 356
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 90/142 (63%), Positives = 109/142 (76%), Gaps = 2/142 (1%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HMEN+E GR AI+ LNG IV+ + +K EAA SRKGPNTPTTK+FVGNL+DNT+AP+VREL
Sbjct: 49 HMENEEAGRNAIQNLNGHIVHGQEIKCEAAKSRKGPNTPTTKIFVGNLTDNTKAPQVREL 108
Query: 65 FVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YGTVVECDIVRNYGFVH+++ D+N IKELNG MVDG+ MKV ++ +
Sbjct: 109 FAKYGTVVECDIVRNYGFVHLEATGDVNDAIKELNGRMVDGQAMKVQISTSRVRQRPGMG 168
Query: 123 NVIFFIRCGRGGHWSKECPRAG 144
+ RCGRGGHWSKECP+ G
Sbjct: 169 DPEQCYRCGRGGHWSKECPKGG 190
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 42/48 (87%)
Query: 299 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MPGFSSVGTFKIFIGN+ T+ I+PLFEKYGKVVECDVVKNYGFV
Sbjct: 1 MPGFSSVGTFKIFIGNLADKTTNADIKPLFEKYGKVVECDVVKNYGFV 48
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 110/224 (49%), Gaps = 25/224 (11%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMV 102
T K+F+GNL+D T +++ LF YG VVECD+V+NYGFVH+++ + + I+ LNG +V
Sbjct: 9 TFKIFIGNLADKTTNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNGHIV 68
Query: 103 DGKPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKS---KSSH 159
G+ +K A + IF G +K F G + ++
Sbjct: 69 HGQEIKCEAAKSRKGPNTPTTKIF---VGNLTDNTKAPQVRELFAKYGTVVECDIVRNYG 125
Query: 160 KIYQDALVLWED--QDLWTGLVKGTSDLVVVIASPIHQ--AHCDSFLC--CSR------- 206
++ +A D ++L +V G + V + S + Q D C C R
Sbjct: 126 FVHLEATGDVNDAIKELNGRMVDGQAMKVQISTSRVRQRPGMGDPEQCYRCGRGGHWSKE 185
Query: 207 --RFGAVGGPGPLDRFGYPREAYPRDPYPPPPPPSFLRDRMMGG 248
+ G GGP DR GY + RDPYPPPPPP FLRDR+MGG
Sbjct: 186 CPKGGMGGGP---DRNGYRDRMFGRDPYPPPPPPPFLRDRLMGG 226
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T KIF+GN+ T +R LF KYG VVECD+V+NYGFV
Sbjct: 88 TTKIFVGNLTDNTKAPQVRELFAKYGTVVECDIVRNYGFV 127
>gi|242007024|ref|XP_002424342.1| Arginine/serine-rich-splicing factor RSP31, putative [Pediculus
humanus corporis]
gi|212507742|gb|EEB11604.1| Arginine/serine-rich-splicing factor RSP31, putative [Pediculus
humanus corporis]
Length = 326
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/142 (61%), Positives = 111/142 (78%), Gaps = 2/142 (1%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HME+++ GR AI+ L+G +V+ +K+EAATSRKGP TPTTKVFVGNL+DNT+AP+VR L
Sbjct: 49 HMEHEDSGRDAIQNLDGYLVHGSSIKVEAATSRKGPQTPTTKVFVGNLTDNTKAPQVRAL 108
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YGTVVECDIVRNYGFVHI+S D +N+CI+ELNG ++DG+PMKV ++ +
Sbjct: 109 FAKYGTVVECDIVRNYGFVHIESSDNVNECIRELNGYILDGQPMKVQLSTSRVRQRPGMG 168
Query: 123 NVIFFIRCGRGGHWSKECPRAG 144
+ RCGRGGHWSKECP+ G
Sbjct: 169 DPEQCYRCGRGGHWSKECPKGG 190
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 43/48 (89%)
Query: 299 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MPGFSSVGTFKIF+GN++ T+ I+PLFEKYGKVVECD+VKNYGFV
Sbjct: 1 MPGFSSVGTFKIFVGNLSDKTTKADIQPLFEKYGKVVECDIVKNYGFV 48
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMV 102
T K+FVGNLSD T +++ LF YG VVECDIV+NYGFVH++ D + I+ L+G +V
Sbjct: 9 TFKIFVGNLSDKTTKADIQPLFEKYGKVVECDIVKNYGFVHMEHEDSGRDAIQNLDGYLV 68
Query: 103 DGKPMKVVVA 112
G +KV A
Sbjct: 69 HGSSIKVEAA 78
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y G+ + +EA T K+F+GN+ T +R LF KYG VVECD+V+NYG
Sbjct: 66 YLVHGSSIKVEAATSRKGPQTPTTKVFVGNLTDNTKAPQVRALFAKYGTVVECDIVRNYG 125
Query: 345 FV 346
FV
Sbjct: 126 FV 127
>gi|328712077|ref|XP_003244723.1| PREDICTED: RNA-binding protein lark-like isoform 2 [Acyrthosiphon
pisum]
Length = 389
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/141 (60%), Positives = 108/141 (76%), Gaps = 1/141 (0%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++D GR AIK LNG +VN+ +K+EAATSR+GPNTPTTK+FVGNLS+ T+A EVREL
Sbjct: 89 HMDDDTTGRAAIKALNGSMVNDLAMKVEAATSRRGPNTPTTKIFVGNLSETTKANEVREL 148
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNV 124
F YGTVVECDIVR YGFVHIDS D+++ IK+LNG M+DG+P+KV ++ + +
Sbjct: 149 FGRYGTVVECDIVRTYGFVHIDSTDVSRLIKDLNGHMLDGQPIKVQISNSRVRQRPGMGM 208
Query: 125 -IFFIRCGRGGHWSKECPRAG 144
RCG+GGHWS+EC R G
Sbjct: 209 PEQCYRCGKGGHWSRECSREG 229
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 8/100 (8%)
Query: 14 TAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 73
TA+KE + P E+ TS + T K+F+GNLS+ T + ++R LF YG VVE
Sbjct: 26 TAVKE-------KMPSDTESNTSFNNSSVRTFKIFIGNLSEKTTSSDIRPLFEKYGKVVE 78
Query: 74 CDIVRNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVA 112
CD+++N+GFVH+D + IK LNG MV+ MKV A
Sbjct: 79 CDVMKNFGFVHMDDDTTGRAAIKALNGSMVNDLAMKVEAA 118
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 38/44 (86%)
Query: 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
SSV TFKIFIGN++ T+ IRPLFEKYGKVVECDV+KN+GFV
Sbjct: 45 SSVRTFKIFIGNLSEKTTSSDIRPLFEKYGKVVECDVMKNFGFV 88
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T KIF+GN++ T +R LF +YG VVECD+V+ YGFV
Sbjct: 128 TTKIFVGNLSETTKANEVRELFGRYGTVVECDIVRTYGFV 167
>gi|332377011|gb|AEE63645.1| unknown [Dendroctonus ponderosae]
Length = 356
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/141 (59%), Positives = 109/141 (77%), Gaps = 2/141 (1%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HMEN+ EGR AI++LNGQ++N + +K EAA SRK P TPT K+FVGNL+DNT+AP++REL
Sbjct: 49 HMENESEGREAIQQLNGQMINGQSMKCEAAKSRKAPQTPTIKIFVGNLTDNTKAPQIREL 108
Query: 65 FVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F +GTVVECDIVRNYGFVH++S D+N+ IK+LNG +VDG+PMKV ++ +
Sbjct: 109 FKKFGTVVECDIVRNYGFVHLESSGDVNEAIKDLNGQIVDGQPMKVQISTSRVRQRPGMG 168
Query: 123 NVIFFIRCGRGGHWSKECPRA 143
+ RCGRGGHWSKECP+
Sbjct: 169 DPEQCYRCGRGGHWSKECPKG 189
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 42/48 (87%)
Query: 299 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MPGFS+ GTFKIF+GN+ TSV +RPLFEKYGKVVECDVVKNYGFV
Sbjct: 1 MPGFSTAGTFKIFVGNLAEKTSVSELRPLFEKYGKVVECDVVKNYGFV 48
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMV 102
T K+FVGNL++ T E+R LF YG VVECD+V+NYGFVH+++ + + I++LNG M+
Sbjct: 9 TFKIFVGNLAEKTSVSELRPLFEKYGKVVECDVVKNYGFVHMENESEGREAIQQLNGQMI 68
Query: 103 DGKPMKVVVA 112
+G+ MK A
Sbjct: 69 NGQSMKCEAA 78
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T KIF+GN+ T IR LF+K+G VVECD+V+NYGFV
Sbjct: 88 TIKIFVGNLTDNTKAPQIRELFKKFGTVVECDIVRNYGFV 127
>gi|328716895|ref|XP_001948178.2| PREDICTED: RNA-binding protein lark-like [Acyrthosiphon pisum]
Length = 376
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/147 (57%), Positives = 106/147 (72%), Gaps = 13/147 (8%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++D GR AIK LNG +VN+ +K+E ATSR+GPNTPTTK+FVGNLS+ T+ EVREL
Sbjct: 89 HMDDDTTGRAAIKALNGSMVNDLAMKVETATSRRGPNTPTTKIFVGNLSETTKENEVREL 148
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVVVAGF-------ISS 117
F YGTVVECDIVR YGFVHIDS D+++ IK+LNG M+DGKP+KV ++ +
Sbjct: 149 FERYGTVVECDIVRTYGFVHIDSTDVSRLIKDLNGYMLDGKPIKVQISNSRVRPRPGMGM 208
Query: 118 ILSCLNVIFFIRCGRGGHWSKECPRAG 144
C RCG+GGHWS+EC R G
Sbjct: 209 PEQCY------RCGKGGHWSRECSRKG 229
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 8/100 (8%)
Query: 14 TAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 73
TA+KE + P E+ TS + T K+F+GNLS+ T + ++R LF YG VVE
Sbjct: 26 TAVKE-------KMPSDTESNTSLNNSSVGTFKIFIGNLSEKTTSSDIRPLFEKYGKVVE 78
Query: 74 CDIVRNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVA 112
CD+++N+GFVH+D + IK LNG MV+ MKV A
Sbjct: 79 CDVMKNFGFVHMDDDTTGRAAIKALNGSMVNDLAMKVETA 118
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%)
Query: 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
SSVGTFKIFIGN++ T+ IRPLFEKYGKVVECDV+KN+GFV
Sbjct: 45 SSVGTFKIFIGNLSEKTTSSDIRPLFEKYGKVVECDVMKNFGFV 88
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 30/40 (75%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T KIF+GN++ T +R LFE+YG VVECD+V+ YGFV
Sbjct: 128 TTKIFVGNLSETTKENEVRELFERYGTVVECDIVRTYGFV 167
>gi|157138308|ref|XP_001657237.1| RNA binding motif protein 4,lark [Aedes aegypti]
gi|108869514|gb|EAT33739.1| AAEL013982-PA [Aedes aegypti]
Length = 330
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/157 (56%), Positives = 112/157 (71%), Gaps = 6/157 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HMEN+++GR AI+ L+G +VN K +K+EAA +R+ PN TTK+FVGNL+D TRAP+VREL
Sbjct: 46 HMENEDQGRDAIQNLDGYVVNGKAIKVEAARNRRAPNANTTKIFVGNLTDVTRAPQVREL 105
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YGTVVECDIVRNYGFVH+D + D+N+ I+ELNGMMVDG+PMKV V+ +
Sbjct: 106 FQKYGTVVECDIVRNYGFVHLDPTGDVNEAIRELNGMMVDGQPMKVQVSTSRVRPKPGMG 165
Query: 123 NVIFFIRCGRGGHWSKECPR----AGNFRSSGCYCKS 155
+ RCGR GHWSKECPR FR Y +
Sbjct: 166 DPEMCYRCGRSGHWSKECPRLLWSESRFRDRPMYARD 202
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELN 98
P + T K+F+GN+ + T+ ++R LF YGTVVECD+V+NYGFVH+++ D + I+ L+
Sbjct: 2 PASGTFKLFIGNVDEKTQPSDLRPLFEKYGTVVECDVVKNYGFVHMENEDQGRDAIQNLD 61
Query: 99 GMMVDGKPMKVVVA 112
G +V+GK +KV A
Sbjct: 62 GYVVNGKAIKVEAA 75
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+ GTFK+FIGNV+ T +RPLFEKYG VVECDVVKNYGFV
Sbjct: 3 ASGTFKLFIGNVDEKTQPSDLRPLFEKYGTVVECDVVKNYGFV 45
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 289 GTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G + +EA + T KIF+GN+ T +R LF+KYG VVECD+V+NYGFV
Sbjct: 67 GKAIKVEAARNRRAPNANTTKIFVGNLTDVTRAPQVRELFQKYGTVVECDIVRNYGFV 124
>gi|389611835|dbj|BAM19479.1| RNA binding motif protein 4,lark [Papilio xuthus]
Length = 296
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/140 (62%), Positives = 109/140 (77%), Gaps = 2/140 (1%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 65
MEN++ GR AI+ LNG++V+ + + IEAA SRK P+TPTTK+FVGNL+D TRAPEVRELF
Sbjct: 1 MENEQVGREAIQNLNGELVHGQAIXIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELF 60
Query: 66 VPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA-GFISSILSCLN 123
+GTVVECDIVRNYGFVH+D+ D+N+ I ELNGMMVDG+PMKV ++ + +
Sbjct: 61 QKFGTVVECDIVRNYGFVHLDATGDVNEAIXELNGMMVDGQPMKVQLSTSRVRQRPGMGD 120
Query: 124 VIFFIRCGRGGHWSKECPRA 143
RCGRGGHWSKECP+A
Sbjct: 121 PEQCYRCGRGGHWSKECPKA 140
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 36/58 (62%)
Query: 289 GTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G + IEA S T KIF+GN+ T +R LF+K+G VVECD+V+NYGFV
Sbjct: 21 GQAIXIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFV 78
>gi|125977312|ref|XP_001352689.1| GA21193 [Drosophila pseudoobscura pseudoobscura]
gi|54641438|gb|EAL30188.1| GA21193 [Drosophila pseudoobscura pseudoobscura]
Length = 352
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/140 (60%), Positives = 105/140 (75%), Gaps = 2/140 (1%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HME +++GR AI+ LNG ++N+ +K+EAA SR+ PNTPTTK+FVGNL+D TRAPEVREL
Sbjct: 46 HMETEQQGRDAIQNLNGYVLNDNAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVREL 105
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YGTVVECDIVRNYGFVH+D D+ IKELNG +VDG+P+KV V+ +
Sbjct: 106 FQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMG 165
Query: 123 NVIFFIRCGRGGHWSKECPR 142
+ RCGR GHWSKECPR
Sbjct: 166 DPEQCYRCGRSGHWSKECPR 185
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELN 98
P T K+F+GNL + T+A E+R LF YGTVVECD+V+NYGFVH+++ + I+ LN
Sbjct: 2 PGAGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLN 61
Query: 99 GMMVDGKPMKVVVA 112
G +++ +KV A
Sbjct: 62 GYVLNDNAIKVEAA 75
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 36/48 (75%), Gaps = 3/48 (6%)
Query: 299 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MPG GTFK+FIGN++ T +R LFEKYG VVECDVVKNYGFV
Sbjct: 1 MPG---AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFV 45
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 290 TVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+ +EA + T KIF+GN+ T +R LF+KYG VVECD+V+NYGFV
Sbjct: 68 NAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFV 124
>gi|17647581|ref|NP_523957.1| lark, isoform A [Drosophila melanogaster]
gi|24659966|ref|NP_729237.1| lark, isoform B [Drosophila melanogaster]
gi|24659971|ref|NP_729238.1| lark, isoform C [Drosophila melanogaster]
gi|24659976|ref|NP_729239.1| lark, isoform D [Drosophila melanogaster]
gi|24659981|ref|NP_729240.1| lark, isoform E [Drosophila melanogaster]
gi|62510825|sp|Q94901.1|LARK_DROME RecName: Full=RNA-binding protein lark
gi|1518654|gb|AAB07067.1| RNA-binding protein lark [Drosophila melanogaster]
gi|7295256|gb|AAF50578.1| lark, isoform A [Drosophila melanogaster]
gi|16769574|gb|AAL29006.1| LD40792p [Drosophila melanogaster]
gi|23094008|gb|AAN12053.1| lark, isoform B [Drosophila melanogaster]
gi|23094009|gb|AAN12054.1| lark, isoform C [Drosophila melanogaster]
gi|23094010|gb|AAN12055.1| lark, isoform D [Drosophila melanogaster]
gi|23094011|gb|AAN12056.1| lark, isoform E [Drosophila melanogaster]
gi|220946850|gb|ACL85968.1| lark-PA [synthetic construct]
gi|220956448|gb|ACL90767.1| lark-PA [synthetic construct]
Length = 352
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 86/140 (61%), Positives = 104/140 (74%), Gaps = 2/140 (1%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HME +++GR AI+ LNG +NE +K+EAA SR+ PNTPTTK+FVGNL+D TRAPEVREL
Sbjct: 46 HMETEQQGRDAIQNLNGYTLNEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVREL 105
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YGTVVECDIVRNYGFVH+D D+ IKELNG +VDG+P+KV V+ +
Sbjct: 106 FQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMG 165
Query: 123 NVIFFIRCGRGGHWSKECPR 142
+ RCGR GHWSKECPR
Sbjct: 166 DPEQCYRCGRSGHWSKECPR 185
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELN 98
P T K+F+GNL + T+A E+R LF YGTVVECD+V+NYGFVH+++ + I+ LN
Sbjct: 2 PGAGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLN 61
Query: 99 GMMVDGKPMKVVVA 112
G ++ +KV A
Sbjct: 62 GYTLNEFAIKVEAA 75
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 36/48 (75%), Gaps = 3/48 (6%)
Query: 299 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MPG GTFK+FIGN++ T +R LFEKYG VVECDVVKNYGFV
Sbjct: 1 MPG---AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFV 45
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 291 VVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+ +EA + T KIF+GN+ T +R LF+KYG VVECD+V+NYGFV
Sbjct: 69 AIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFV 124
>gi|170046272|ref|XP_001850696.1| RNA binding motif protein 4,lark [Culex quinquefasciatus]
gi|167869088|gb|EDS32471.1| RNA binding motif protein 4,lark [Culex quinquefasciatus]
Length = 332
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/140 (60%), Positives = 106/140 (75%), Gaps = 2/140 (1%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HME ++ GR AI+ L+G +VN K +K+EAA +R+ PN+ TTK+FVGNL+D TRAP+VREL
Sbjct: 46 HMETEDMGRDAIQNLDGYVVNGKAIKVEAARNRRAPNSNTTKIFVGNLTDVTRAPQVREL 105
Query: 65 FVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YGTVVECDIVRNYGFVH+D D+N+ I+ELNGMMVDG+PMKV V+ +
Sbjct: 106 FQKYGTVVECDIVRNYGFVHLDPQGDVNEAIRELNGMMVDGQPMKVQVSTSRVRPKPGMG 165
Query: 123 NVIFFIRCGRGGHWSKECPR 142
+ RCGR GHWSKECPR
Sbjct: 166 DPEQCYRCGRSGHWSKECPR 185
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELN 98
P + T K+F+GN+ + T+ ++R LF YGTVVECD+V+NYGFVH+++ D+ + I+ L+
Sbjct: 2 PASATFKLFIGNVDEKTQPSDLRPLFEKYGTVVECDVVKNYGFVHMETEDMGRDAIQNLD 61
Query: 99 GMMVDGKPMKVVVA 112
G +V+GK +KV A
Sbjct: 62 GYVVNGKAIKVEAA 75
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 34/43 (79%)
Query: 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+ TFK+FIGNV+ T +RPLFEKYG VVECDVVKNYGFV
Sbjct: 3 ASATFKLFIGNVDEKTQPSDLRPLFEKYGTVVECDVVKNYGFV 45
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 289 GTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G + +EA + T KIF+GN+ T +R LF+KYG VVECD+V+NYGFV
Sbjct: 67 GKAIKVEAARNRRAPNSNTTKIFVGNLTDVTRAPQVRELFQKYGTVVECDIVRNYGFV 124
>gi|328712079|ref|XP_001943947.2| PREDICTED: RNA-binding protein lark-like isoform 1 [Acyrthosiphon
pisum]
Length = 374
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/108 (67%), Positives = 92/108 (85%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++D GR AIK LNG +VN+ +K+EAATSR+GPNTPTTK+FVGNLS+ T+A EVREL
Sbjct: 89 HMDDDTTGRAAIKALNGSMVNDLAMKVEAATSRRGPNTPTTKIFVGNLSETTKANEVREL 148
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVVVA 112
F YGTVVECDIVR YGFVHIDS D+++ IK+LNG M+DG+P+KV ++
Sbjct: 149 FGRYGTVVECDIVRTYGFVHIDSTDVSRLIKDLNGHMLDGQPIKVQIS 196
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 8/100 (8%)
Query: 14 TAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 73
TA+KE + P E+ TS + T K+F+GNLS+ T + ++R LF YG VVE
Sbjct: 26 TAVKE-------KMPSDTESNTSFNNSSVRTFKIFIGNLSEKTTSSDIRPLFEKYGKVVE 78
Query: 74 CDIVRNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVA 112
CD+++N+GFVH+D + IK LNG MV+ MKV A
Sbjct: 79 CDVMKNFGFVHMDDDTTGRAAIKALNGSMVNDLAMKVEAA 118
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 38/44 (86%)
Query: 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
SSV TFKIFIGN++ T+ IRPLFEKYGKVVECDV+KN+GFV
Sbjct: 45 SSVRTFKIFIGNLSEKTTSSDIRPLFEKYGKVVECDVMKNFGFV 88
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T KIF+GN++ T +R LF +YG VVECD+V+ YGFV
Sbjct: 128 TTKIFVGNLSETTKANEVRELFGRYGTVVECDIVRTYGFV 167
>gi|406507553|gb|AFS34620.1| lark, partial [Clunio marinus]
Length = 285
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 108/182 (59%), Gaps = 25/182 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H +N+ + A+ LNG ++N +K+E A SR+ PN+ TTK+FVGNL++ TR EVREL
Sbjct: 46 HFQNESDAXDAVANLNGYVINGNAIKVENAKSRRAPNSNTTKIFVGNLTEKTRTAEVREL 105
Query: 65 FVPYGTVVECDIV--RNYGFVHI---DSPDINKCIKELNGMMVDGKPMKVVVAGF----- 114
F YGTV+ECD+V RNYGFVH+ D+ ++N I+ELNGM++DG+ +KV V+
Sbjct: 106 FEKYGTVLECDVVXCRNYGFVHLEVADNVNVNDAIRELNGMVIDGQALKVQVSTSRVRQR 165
Query: 115 --ISSILSCLNVIFFIRCGRGGHWSKECPR-------AGNFRSSGCYCKSKSSHKIYQDA 165
+ SC RCGR GHWSKECPR G FR G + +D
Sbjct: 166 PGMGDPESCY------RCGRTGHWSKECPRIWNERAGVGAFRERGPFIPPPPPPAFLRDR 219
Query: 166 LV 167
++
Sbjct: 220 II 221
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELN 98
P + K+F+GNL +NT+ +VR LF YG VVE DIV+NYGFVH + D + LN
Sbjct: 2 PGAQSFKLFIGNLDENTKTNDVRPLFEKYGKVVEFDIVKNYGFVHFQNESDAXDAVANLN 61
Query: 99 GMMVDGKPMKVVVA 112
G +++G +KV A
Sbjct: 62 GYVINGNAIKVENA 75
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 36/48 (75%), Gaps = 3/48 (6%)
Query: 299 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MPG S FK+FIGN++ T +RPLFEKYGKVVE D+VKNYGFV
Sbjct: 1 MPGAQS---FKLFIGNLDENTKTNDVRPLFEKYGKVVEFDIVKNYGFV 45
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 289 GTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFV 346
G + +E + T KIF+GN+ T +R LFEKYG V+ECDVV +NYGFV
Sbjct: 67 GNAIKVENAKSRRAPNSNTTKIFVGNLTEKTRTAEVRELFEKYGTVLECDVVXCRNYGFV 126
>gi|312378041|gb|EFR24719.1| hypothetical protein AND_10495 [Anopheles darlingi]
Length = 311
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 98/158 (62%), Gaps = 15/158 (9%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HME + E R AI LNG +V +P+K+EAA SR+ PN T K+FVGNL+D TRAP++R+L
Sbjct: 89 HMEKEAEARQAIDNLNGYMVGGQPIKVEAARSRRAPNANTAKIFVGNLTDKTRAPQIRDL 148
Query: 65 FVPYGTVVECDIVRNYGFVHIDSP--DINKCIKELNGMMVDGKPMKVVVA-GFISSILSC 121
F + VRNYGFVH+D D+N+ I+ELNGM+VDG+PMKV V+ +
Sbjct: 149 FEKF--------VRNYGFVHLDPTGGDVNEAIRELNGMIVDGQPMKVQVSTSRVRPKPGM 200
Query: 122 LNVIFFIRCGRGGHWSKECPR----AGNFRSSGCYCKS 155
+ RCGR GHWSKECPR FR Y +
Sbjct: 201 GDPEQCYRCGRAGHWSKECPRLIWAERGFRERSMYARD 238
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMV 102
T K+F+GN+ + T E+R+LF YG V CD+V+N+GFVH++ + + I LNG MV
Sbjct: 49 TFKLFIGNVDEKTPPSELRQLFEQYGVVSSCDVVKNFGFVHMEKEAEARQAIDNLNGYMV 108
Query: 103 DGKPMKVVVA 112
G+P+KV A
Sbjct: 109 GGQPIKVEAA 118
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 296 ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
R++PG GTFK+FIGNV+ T +R LFE+YG V CDVVKN+GFV
Sbjct: 40 GRDLPG--PAGTFKLFIGNVDEKTPPSELRQLFEQYGVVSSCDVVKNFGFV 88
Score = 37.7 bits (86), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y G + +EA + T KIF+GN+ T IR LFEK+ V+NYG
Sbjct: 106 YMVGGQPIKVEAARSRRAPNANTAKIFVGNLTDKTRAPQIRDLFEKF--------VRNYG 157
Query: 345 FV 346
FV
Sbjct: 158 FV 159
>gi|158254301|gb|AAI54223.1| Zgc:85696 [Danio rerio]
Length = 556
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H++ + AI+ELNG+ + L +E + +G +TKVFVGNLS +++EL
Sbjct: 46 HLQGEGAAERAIRELNGREFKGRNLVVEES---RGRPLHSTKVFVGNLSSMCTTEDLQEL 102
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLN 123
F +G V+ECD V+ Y FVH+++ D + I+ L+G G+P+ V ++ S +
Sbjct: 103 FQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQTPTG 162
Query: 124 VIFFIRCGRGGHWSKECP 141
I + CG+ GH++ ECP
Sbjct: 163 KIPCVSCGKQGHYAGECP 180
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T K+FVGNL+ +T E+ +F YG VV C ++R + FVH+ + I+ELNG
Sbjct: 6 TVKLFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF 65
Query: 103 DGKPMKV 109
G+ + V
Sbjct: 66 KGRNLVV 72
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 291 VVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+VV E+R P S+ K+F+GN++ + E ++ LF+ +GKV+ECD VK Y FV
Sbjct: 70 LVVEESRGRPLHST----KVFVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFV 121
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T K+F+GN+ T+ E + +FE YG+VV C V++ + FV
Sbjct: 6 TVKLFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFV 45
>gi|47086421|ref|NP_997973.1| RNA binding motif protein 14 [Danio rerio]
gi|46249892|gb|AAH68361.1| Zgc:85696 [Danio rerio]
gi|68085002|gb|AAH56604.2| Zgc:85696 [Danio rerio]
Length = 556
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H++ + AI+ELNG+ + L +E + +G +TKVFVGNLS +++EL
Sbjct: 46 HLQGEGAAERAIRELNGREFKGRNLVVEES---RGRPLHSTKVFVGNLSSMCTTEDLQEL 102
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLN 123
F +G V+ECD V+ Y FVH+++ D + I+ L+G G+P+ V ++ S +
Sbjct: 103 FQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQTPTG 162
Query: 124 VIFFIRCGRGGHWSKECP 141
I + CG+ GH++ ECP
Sbjct: 163 KIPCVSCGKQGHYAGECP 180
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T K+FVGNL+ +T E+ +F YG VV C ++R + FVH+ + I+ELNG
Sbjct: 6 TVKLFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF 65
Query: 103 DGKPMKV 109
G+ + V
Sbjct: 66 KGRNLVV 72
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 291 VVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+VV E+R P S+ K+F+GN++ + E ++ LF+ +GKV+ECD VK Y FV
Sbjct: 70 LVVEESRGRPLHST----KVFVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFV 121
Score = 44.3 bits (103), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T K+F+GN+ T+ E + +FE YG+VV C V++ + FV
Sbjct: 6 TVKLFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFV 45
>gi|348544591|ref|XP_003459764.1| PREDICTED: RNA-binding protein 4.1-like [Oreochromis niloticus]
Length = 419
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 7/139 (5%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ E AI+ L+ +N +P+ +E + +G + +TK+ VGN++ + E+R
Sbjct: 41 HMDDKTEAEEAIRNLHQYELNGQPMNVELS---RGKSRGSTKLHVGNIACTNQ--ELRAK 95
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F +GTV+ECDIV+NY FVH++ D + I +L+ GK M V ++ + +
Sbjct: 96 FEEFGTVLECDIVKNYAFVHMERMEDAMEAINQLDNTAFKGKLMSVKLSTSRLRTAPGMG 155
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 156 DRSGCYRCGQEGHWSKECP 174
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDG 104
K+F+GNLS +T + E+R LF YG + EC IV+N+GFVH+D + + I+ L+ ++G
Sbjct: 3 KIFIGNLSPDTTSDELRSLFSQYGKIAECSIVKNFGFVHMDDKTEAEEAIRNLHQYELNG 62
Query: 105 KPMKVVVA 112
+PM V ++
Sbjct: 63 QPMNVELS 70
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIFIGN++P T+ + +R LF +YGK+ EC +VKN+GFV
Sbjct: 3 KIFIGNLSPDTTSDELRSLFSQYGKIAECSIVKNFGFV 40
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
S G+ K+ +GN+ + + +R FE++G V+ECD+VKNY FV
Sbjct: 74 SRGSTKLHVGNI--ACTNQELRAKFEEFGTVLECDIVKNYAFV 114
>gi|432888898|ref|XP_004075077.1| PREDICTED: RNA-binding protein 4.1-like [Oryzias latipes]
Length = 417
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 8/155 (5%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ E AI+ L+ +N +P+ +E + +G + +TK+ VGN++ + E+R
Sbjct: 41 HMDSKAEAEEAIRNLHQYELNAQPMNVELS---RGKSRGSTKLHVGNIACTNQ--ELRAK 95
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F +G V+ECDIV+NY FVH++ D + I +L+ GK M V ++ + +
Sbjct: 96 FEEFGAVLECDIVKNYAFVHMERMEDAMEAINKLDNTAFKGKLMSVKLSTSRLRTAPGMG 155
Query: 123 NVIFFIRCGRGGHWSKECPRAGN-FRSSGCYCKSK 156
+ RCG+ GHWSKECP N F+ +G KS+
Sbjct: 156 DRSGCYRCGQEGHWSKECPLDQNGFQRNGSEPKSE 190
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+F+GNL+ T E+R LF YG + EC IV+N+GFVH+DS + + I+ L+ ++
Sbjct: 3 KIFIGNLAPETTTEELRSLFSQYGKIAECSIVKNFGFVHMDSKAEAEEAIRNLHQYELNA 62
Query: 105 KPMKVVVA 112
+PM V ++
Sbjct: 63 QPMNVELS 70
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 30/38 (78%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIFIGN+ P T+ E +R LF +YGK+ EC +VKN+GFV
Sbjct: 3 KIFIGNLAPETTTEELRSLFSQYGKIAECSIVKNFGFV 40
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
S G+ K+ +GN+ + + +R FE++G V+ECD+VKNY FV
Sbjct: 74 SRGSTKLHVGNI--ACTNQELRAKFEEFGAVLECDIVKNYAFV 114
>gi|45361253|ref|NP_989204.1| RNA binding motif protein 4B [Xenopus (Silurana) tropicalis]
gi|38648979|gb|AAH63354.1| RNA binding motif protein 4B [Xenopus (Silurana) tropicalis]
gi|89272511|emb|CAJ82586.1| RNA binding motif protein 4 [ [Xenopus (Silurana) tropicalis]
Length = 338
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 75/139 (53%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HME+ + A+ LN ++ P+ +E + +G +TK+ V NLS + + E+R
Sbjct: 41 HMEDRKAADEAVHNLNHYKLHSVPINVEHS---RGKPKASTKLHVSNLSTSCTSEELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCL- 122
F YG V+ECDIV++Y FVH++ S + IK L+ GK M V ++ + +
Sbjct: 98 FEEYGAVLECDIVKDYAFVHMERSAEALDAIKNLDNTEFKGKRMHVQLSTSRLRVTPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
RCG+ GHWSKECP
Sbjct: 158 ERTRCYRCGKEGHWSKECP 176
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+FVGNL E++ LF +G V ECDI++NYGFVH+ D ++ + LN +
Sbjct: 3 KLFVGNLPPEATQSELKSLFEQFGRVTECDIIKNYGFVHMEDRKAADEAVHNLNHYKLHS 62
Query: 105 KPMKV 109
P+ V
Sbjct: 63 VPINV 67
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 30/38 (78%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+GN+ P + ++ LFE++G+V ECD++KNYGFV
Sbjct: 3 KLFVGNLPPEATQSELKSLFEQFGRVTECDIIKNYGFV 40
Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+ K+ + N++ + E +R FE+YG V+ECD+VK+Y FV
Sbjct: 76 ASTKLHVSNLSTSCTSEELRAKFEEYGAVLECDIVKDYAFV 116
>gi|432920249|ref|XP_004079910.1| PREDICTED: uncharacterized protein LOC101158309 [Oryzias latipes]
Length = 564
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H++ + AI+ELNG+ + L +E + R +TKVFVGNLS ++++L
Sbjct: 46 HLQGEGAAERAIRELNGREFRGRNLVVEESRGRP---LHSTKVFVGNLSGMCTTEDLQQL 102
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLN 123
F +G V+ECD V+ Y FVH+++ D + I+ L+G G+P+ V ++ S +
Sbjct: 103 FQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQAPTG 162
Query: 124 VIFFIRCGRGGHWSKECP 141
I + CG+ GH++ ECP
Sbjct: 163 KIPCVNCGKQGHYAGECP 180
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T K+FVGNL+ +T E+ +F PYG VV C ++R + FVH+ + I+ELNG
Sbjct: 6 TVKLFVGNLALDTTQEELSAIFEPYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF 65
Query: 103 DGKPMKV 109
G+ + V
Sbjct: 66 RGRNLVV 72
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 291 VVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+VV E+R P S+ K+F+GN++ + E ++ LF+ +GKV+ECD VK Y FV
Sbjct: 70 LVVEESRGRPLHST----KVFVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGYAFV 121
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T K+F+GN+ T+ E + +FE YG+VV C V++ + FV
Sbjct: 6 TVKLFVGNLALDTTQEELSAIFEPYGQVVSCSVLRQFAFV 45
>gi|410929393|ref|XP_003978084.1| PREDICTED: uncharacterized protein LOC101079487 [Takifugu rubripes]
Length = 568
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H++ + AI+ELNG+ + L +E + +G +TKVFVGNLS ++++L
Sbjct: 46 HLQGEGAAERAIRELNGREFRGRNLVVEES---RGRPLHSTKVFVGNLSGMCTTEDLQQL 102
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLN 123
F +G V+ECD V+ Y FVH+++ D + I+ L+G G+P+ V ++ S +
Sbjct: 103 FQTFGKVLECDKVKGYAFVHMETKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQTPTG 162
Query: 124 VIFFIRCGRGGHWSKECP 141
I + CG+ GH++ ECP
Sbjct: 163 KIPCVNCGKQGHYAGECP 180
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T K+FVGNL+ +T E+ +F PYG VV C ++R + FVH+ + I+ELNG
Sbjct: 6 TVKIFVGNLALDTTQEELSAIFEPYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF 65
Query: 103 DGKPMKV 109
G+ + V
Sbjct: 66 RGRNLVV 72
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 291 VVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+VV E+R P S+ K+F+GN++ + E ++ LF+ +GKV+ECD VK Y FV
Sbjct: 70 LVVEESRGRPLHST----KVFVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGYAFV 121
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T KIF+GN+ T+ E + +FE YG+VV C V++ + FV
Sbjct: 6 TVKIFVGNLALDTTQEELSAIFEPYGQVVSCSVLRQFAFV 45
>gi|348520155|ref|XP_003447594.1| PREDICTED: hypothetical protein LOC100696008 [Oreochromis
niloticus]
Length = 575
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H++ + AI+ELNG+ + L +E + +G +TKVFVGNLS ++++L
Sbjct: 46 HLQGEGAAERAIRELNGREFRGRNLVVEES---RGRPLHSTKVFVGNLSGMCTTEDLQQL 102
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLN 123
F +G V+ECD V+ Y FVH+++ D + I+ L+G G+P+ V ++ S +
Sbjct: 103 FQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQAPTG 162
Query: 124 VIFFIRCGRGGHWSKECP 141
I + CG+ GH++ ECP
Sbjct: 163 KIPCVNCGKQGHYAGECP 180
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T K+FVGNL+ +T E+ +F PYG VV C ++R + FVH+ + I+ELNG
Sbjct: 6 TVKLFVGNLALDTTQEELSAIFEPYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF 65
Query: 103 DGKPMKV 109
G+ + V
Sbjct: 66 RGRNLVV 72
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 291 VVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+VV E+R P S+ K+F+GN++ + E ++ LF+ +GKV+ECD VK Y FV
Sbjct: 70 LVVEESRGRPLHST----KVFVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGYAFV 121
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T K+F+GN+ T+ E + +FE YG+VV C V++ + FV
Sbjct: 6 TVKLFVGNLALDTTQEELSAIFEPYGQVVSCSVLRQFAFV 45
>gi|47209605|emb|CAF93000.1| unnamed protein product [Tetraodon nigroviridis]
Length = 391
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ E AI+ L+ +N +P+ +E + +G + +TK+ VGN++ + E+R
Sbjct: 41 HMDDKAEADEAIRNLHQYELNGQPMNVELS---RGKSRGSTKLHVGNIACTNQ--ELRAK 95
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F +G VVECDIV+NY FVH++ D I +L+ GK M V ++ + +
Sbjct: 96 FEEFGAVVECDIVKNYAFVHMERMEDAMDAINQLDNTAFKGKLMSVKLSTSRLRTAPGMG 155
Query: 123 NVIFFIRCGRGGHWSKECP 141
N RCG+ GHWSKECP
Sbjct: 156 NRSGCYRCGQEGHWSKECP 174
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+F+GNL+ T + E+R LF YG + EC IV+N+GFVH+D + ++ I+ L+ ++G
Sbjct: 3 KIFIGNLASETTSDEIRSLFSQYGKISECTIVKNFGFVHMDDKAEADEAIRNLHQYELNG 62
Query: 105 KPMKVVVA 112
+PM V ++
Sbjct: 63 QPMNVELS 70
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIFIGN+ T+ + IR LF +YGK+ EC +VKN+GFV
Sbjct: 3 KIFIGNLASETTSDEIRSLFSQYGKISECTIVKNFGFV 40
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
S G+ K+ +GN+ + + +R FE++G VVECD+VKNY FV
Sbjct: 74 SRGSTKLHVGNI--ACTNQELRAKFEEFGAVVECDIVKNYAFV 114
>gi|47212234|emb|CAF96201.1| unnamed protein product [Tetraodon nigroviridis]
Length = 565
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H++ + AI+ELNG+ + L +E + R +TKVFVGNLS ++++L
Sbjct: 46 HLQGEGSAERAIRELNGREFRGRNLVVEESRGRP---LHSTKVFVGNLSGMCTTEDLQQL 102
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLN 123
F +G V+ECD V+ Y FVH+++ D + I+ L+G G+P+ V ++ S +
Sbjct: 103 FQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQTPTG 162
Query: 124 VIFFIRCGRGGHWSKECP 141
I + CG+ GH++ ECP
Sbjct: 163 KIPCVNCGKQGHYAGECP 180
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T K+FVGNL+ +T E+ +F PYG VV C ++R + FVH+ + I+ELNG
Sbjct: 6 TVKIFVGNLALDTTQEELSCIFEPYGQVVSCSVLRQFAFVHLQGEGSAERAIRELNGREF 65
Query: 103 DGKPMKV 109
G+ + V
Sbjct: 66 RGRNLVV 72
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 291 VVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+VV E+R P S+ K+F+GN++ + E ++ LF+ +GKV+ECD VK Y FV
Sbjct: 70 LVVEESRGRPLHST----KVFVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGYAFV 121
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T KIF+GN+ T+ E + +FE YG+VV C V++ + FV
Sbjct: 6 TVKIFVGNLALDTTQEELSCIFEPYGQVVSCSVLRQFAFV 45
>gi|62511030|sp|Q6IQ97.1|RBM41_DANRE RecName: Full=RNA-binding protein 4.1; AltName: Full=RNA-binding
motif protein 4.1
gi|47940417|gb|AAH71513.1| RNA binding motif protein 4.1 [Danio rerio]
gi|160774000|gb|AAI55176.1| RNA binding motif protein 4.1 [Danio rerio]
Length = 419
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 7/147 (4%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ E AI+ L+ ++N + +E + KG +TK+ VGN+S + E+R
Sbjct: 41 HMDSKSEADEAIQNLHHYMLNGMAMNVEMS---KGKPKTSTKLHVGNISSSCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG VVECDIV++Y FVH++ D + I L+ GK M V ++ + +
Sbjct: 98 FEEYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAFQGKLMSVKLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP--RAGNFR 147
RCG+ GHWSKECP + G++R
Sbjct: 158 ERTGCYRCGQEGHWSKECPLDQNGSYR 184
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+FVGNLS NT A E+R LF YG + ECDIV+N+GFVH+DS + ++ I+ L+ M++G
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62
Query: 105 KPMKVVVA 112
M V ++
Sbjct: 63 MAMNVEMS 70
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 32/38 (84%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GN++P T+ E IR LF +YGK+ ECD+VKN+GFV
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFV 40
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+ +GN++ + + +R FE+YG VVECD+VK+Y FV
Sbjct: 79 KLHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFV 116
>gi|147901982|ref|NP_001087983.1| RNA binding motif protein 4B [Xenopus laevis]
gi|52139141|gb|AAH82645.1| LOC494668 protein [Xenopus laevis]
Length = 336
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ + A++ LN ++ + +E SR PN +TK+ V NLS + + E+R
Sbjct: 41 HMDDKKAADEAVRNLNHYKLHNVSINVEH--SRGKPNA-STKLHVSNLSSSCTSEELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCL- 122
F YG V+ECDIV++Y FVH++ S + IK L+ GK M V ++ + +
Sbjct: 98 FEEYGAVLECDIVKDYAFVHMEISAEALDAIKNLDNTEFKGKRMHVQLSTSRLRVTPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
RCG+ GHWSKECP
Sbjct: 158 ERTRCYRCGKEGHWSKECP 176
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELN 98
K+FVGNL PE++ LF +G V ECDI++NYGFVH+D ++ ++ LN
Sbjct: 3 KLFVGNLPPEATQPELKSLFEQFGRVTECDIIKNYGFVHMDDKKAADEAVRNLN 56
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 30/38 (78%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+GN+ P + ++ LFE++G+V ECD++KNYGFV
Sbjct: 3 KLFVGNLPPEATQPELKSLFEQFGRVTECDIIKNYGFV 40
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 290 TVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
++ V +R P S+ K+ + N++ + E +R FE+YG V+ECD+VK+Y FV
Sbjct: 64 SINVEHSRGKPNAST----KLHVSNLSSSCTSEELRAKFEEYGAVLECDIVKDYAFV 116
>gi|410906771|ref|XP_003966865.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 416
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ E AI+ L+ +N +P+ +E + +G + +TK+ VGN++ + E+R
Sbjct: 41 HMDDKAEADEAIRNLHQYELNGQPMNVELS---RGKSRGSTKLHVGNIACTNQ--ELRAK 95
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F +G V+ECDIV+NY FVH++ D I +L+ GK M V ++ + +
Sbjct: 96 FEEFGAVLECDIVKNYAFVHMERMEDAMDAINQLDNTAFKGKLMSVKLSTSRLRTAPGMG 155
Query: 123 NVIFFIRCGRGGHWSKECP 141
N RCG+ GHWSKECP
Sbjct: 156 NRSGCYRCGQEGHWSKECP 174
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+F+GNL+ T + E+R LF YG + EC IV+N+GFVH+D + ++ I+ L+ ++G
Sbjct: 3 KIFIGNLASETTSDEIRSLFSQYGKIAECTIVKNFGFVHMDDKAEADEAIRNLHQYELNG 62
Query: 105 KPMKVVVA 112
+PM V ++
Sbjct: 63 QPMNVELS 70
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIFIGN+ T+ + IR LF +YGK+ EC +VKN+GFV
Sbjct: 3 KIFIGNLASETTSDEIRSLFSQYGKIAECTIVKNFGFV 40
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
S G+ K+ +GN+ + + +R FE++G V+ECD+VKNY FV
Sbjct: 74 SRGSTKLHVGNI--ACTNQELRAKFEEFGAVLECDIVKNYAFV 114
>gi|41054387|ref|NP_955999.1| RNA-binding protein 4.1 [Danio rerio]
gi|28277979|gb|AAH46057.1| RNA binding motif protein 4.1 [Danio rerio]
Length = 419
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 7/147 (4%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ E AI+ L+ ++N + +E + KG +TK VGN+S + E+R
Sbjct: 41 HMDSKSEADEAIQNLHHYMLNGMAMNVEMS---KGKPKTSTKPHVGNISSSCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG VVECDIV++Y FVH++ D + I L+ GK M V ++ + +
Sbjct: 98 FEEYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAFQGKLMSVKLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP--RAGNFR 147
RCG+ GHWSKECP + G++R
Sbjct: 158 ERTGCYRCGQEGHWSKECPLDQNGSYR 184
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+FVGNLS NT A E+R LF YG + ECDIV+N+GFVH+DS + ++ I+ L+ M++G
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62
Query: 105 KPMKVVVA 112
M V ++
Sbjct: 63 MAMNVEMS 70
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 32/38 (84%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GN++P T+ E IR LF +YGK+ ECD+VKN+GFV
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFV 40
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K +GN++ + + +R FE+YG VVECD+VK+Y FV
Sbjct: 79 KPHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFV 116
>gi|148235767|ref|NP_001085690.1| MGC80472 protein [Xenopus laevis]
gi|49255990|gb|AAH73203.1| MGC80472 protein [Xenopus laevis]
Length = 336
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 74/139 (53%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ + A+ LN ++ + +E + +G +TK+ V NLS + + E+R
Sbjct: 41 HMDDRKAADEAVHNLNQYKLHNVAINVEHS---RGKPKASTKLHVSNLSSSCTSDELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCL- 122
F YG V+ECDIV++Y FVH++ S + IK L GK M V ++ + +
Sbjct: 98 FEEYGAVLECDIVKDYAFVHMERSAEALDAIKNLENTEFKGKRMHVQLSTSRLRVTPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DRTLCYRCGKDGHWSKECP 176
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 86
K+FVGNL PE++ LF +G V ECDI++NYGFVH+D
Sbjct: 3 KLFVGNLPPEATQPELKSLFEQFGRVTECDIIKNYGFVHMD 43
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 30/38 (78%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+GN+ P + ++ LFE++G+V ECD++KNYGFV
Sbjct: 3 KLFVGNLPPEATQPELKSLFEQFGRVTECDIIKNYGFV 40
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 290 TVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+ V +R P S+ K+ + N++ + + +R FE+YG V+ECD+VK+Y FV
Sbjct: 64 AINVEHSRGKPKAST----KLHVSNLSSSCTSDELRAKFEEYGAVLECDIVKDYAFV 116
>gi|224164480|ref|XP_002196784.1| PREDICTED: RNA-binding protein 4B-like, partial [Taeniopygia
guttata]
Length = 333
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 78/139 (56%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHHKLHGVCINVEAS---KNKSKASTKLHVGNISPACTNLELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M+V ++ + ++
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMRVQLSTSRLRTVPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DKSSCYRCGKEGHWSKECP 176
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VCINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
S + K+ +GN++P + +R FE+YG V+ECD+VK+Y FV
Sbjct: 74 SKASTKLHVGNISPACTNLELRAKFEEYGPVIECDIVKDYAFV 116
>gi|383422057|gb|AFH34242.1| RNA-binding protein 4B [Macaca mulatta]
Length = 359
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ + RCG+ GHWSKECP
Sbjct: 158 DQSGWYRCGKEGHWSKECP 176
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|432091077|gb|ELK24289.1| RNA-binding protein 4 [Myotis davidii]
Length = 382
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRTLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRTLFEQYGKVLECDIIKNYGFV 40
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|297267337|ref|XP_001109416.2| PREDICTED: RNA-binding protein 4 isoform 5 [Macaca mulatta]
Length = 693
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 370 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 426
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 427 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 486
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 487 DQSGCYRCGKEGHWSKECP 505
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 5 HMENDEEGRTAIKELNGQIVNE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G + + L +E SR P T K+FVGN+S + E+R
Sbjct: 9 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRP-LNTWKIFVGNVSAACTSQELRS 65
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA 112
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V ++
Sbjct: 66 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 115
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 34 ATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINK 92
A S G K+F+GNL E+R LF YG V+ECDI++NYGFVHI D
Sbjct: 320 AASSYGALVRMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAED 379
Query: 93 CIKELNGMMVDGKPMKVVVAGFISSILSCLNV 124
I+ L+ + G + V + S + L+V
Sbjct: 380 AIRNLHHYKLHGVNINVEASKNKSKTSTKLHV 411
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 332 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 369
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 31 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 85
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 387 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 443
Query: 345 FV 346
FV
Sbjct: 444 FV 445
>gi|354496140|ref|XP_003510185.1| PREDICTED: RNA-binding protein 4 [Cricetulus griseus]
gi|344250268|gb|EGW06372.1| RNA-binding protein 4 [Cricetulus griseus]
Length = 360
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|178056229|ref|NP_001116659.1| RNA-binding protein 4 [Sus scrofa]
gi|115394772|gb|ABI97180.1| RBM4 [Sus scrofa]
Length = 365
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 76/140 (54%), Gaps = 5/140 (3%)
Query: 4 GHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 40 AHIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRA 96
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSC 121
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 97 KFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGM 156
Query: 122 LNVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 157 GDQSGCYRCGKEGHWSKECP 176
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGF HI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFAHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGF
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFA 40
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|282165770|ref|NP_001163955.1| RNA binding motif protein 4 [Rattus norvegicus]
gi|149061994|gb|EDM12417.1| rCG48334, isoform CRA_b [Rattus norvegicus]
Length = 365
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|86262144|ref|NP_033058.2| RNA-binding protein 4 [Mus musculus]
gi|62511057|sp|Q8C7Q4.1|RBM4_MOUSE RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
Short=mLark; AltName: Full=RNA-binding motif protein 4;
AltName: Full=RNA-binding motif protein 4a
gi|26340398|dbj|BAC33862.1| unnamed protein product [Mus musculus]
gi|148701113|gb|EDL33060.1| mCG8382, isoform CRA_a [Mus musculus]
gi|219520483|gb|AAI44950.1| RNA binding motif protein 4 [Mus musculus]
Length = 361
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|120577684|gb|AAI30257.1| RNA binding motif protein 4 [Mus musculus]
Length = 361
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|28175406|gb|AAH45210.1| MGC52864 protein [Xenopus laevis]
Length = 460
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 4/109 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM EE A+++LNG+ +N K + +E + R P T K+FVGN+S + E+R++
Sbjct: 40 HMRGAEEATKAVEDLNGRELNGKKMLVELSKPR--PQN-TWKIFVGNVSSSCEGSEIRKI 96
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA 112
F YG VVECDIV++Y FVH+ + I+ LNG + GK + V ++
Sbjct: 97 FEEYGRVVECDIVKDYAFVHMTRESEARAAIEALNGKEIKGKRINVEMS 145
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
K+FVGN+ D T E+ ELF YGTVV C +++ Y FVH+ + + K +++LNG ++G
Sbjct: 2 KIFVGNVDDRTTQEEITELFERYGTVVNCAVMKQYAFVHMRGAEEATKAVEDLNGRELNG 61
Query: 105 KPMKVVVA 112
K M V ++
Sbjct: 62 KKMLVELS 69
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T+KIF+GNV+ IR +FE+YG+VVECD+VK+Y FV
Sbjct: 76 TWKIFVGNVSSSCEGSEIRKIFEEYGRVVECDIVKDYAFV 115
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 308 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GNV+ T+ E I LFE+YG VV C V+K Y FV
Sbjct: 1 MKIFVGNVDDRTTQEEITELFERYGTVVNCAVMKQYAFV 39
>gi|348565067|ref|XP_003468325.1| PREDICTED: RNA-binding protein 4-like [Cavia porcellus]
Length = 365
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|344295811|ref|XP_003419604.1| PREDICTED: RNA-binding protein 4B-like [Loxodonta africana]
Length = 359
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|296218877|ref|XP_002755613.1| PREDICTED: RNA-binding protein 4 [Callithrix jacchus]
gi|403301167|ref|XP_003941270.1| PREDICTED: RNA-binding protein 4 [Saimiri boliviensis boliviensis]
Length = 364
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|93277122|ref|NP_002887.2| RNA-binding protein 4 isoform 1 [Homo sapiens]
gi|350539417|ref|NP_001233570.1| RNA-binding protein 4 [Pan troglodytes]
gi|332249626|ref|XP_003273959.1| PREDICTED: RNA-binding protein 4 isoform 2 [Nomascus leucogenys]
gi|397517069|ref|XP_003828742.1| PREDICTED: RNA-binding protein 4 isoform 1 [Pan paniscus]
gi|402892712|ref|XP_003909553.1| PREDICTED: RNA-binding protein 4 [Papio anubis]
gi|426369345|ref|XP_004051653.1| PREDICTED: RNA-binding protein 4 isoform 1 [Gorilla gorilla
gorilla]
gi|62511089|sp|Q9BWF3.1|RBM4_HUMAN RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
Short=hLark; AltName: Full=RNA-binding motif protein 4;
AltName: Full=RNA-binding motif protein 4a
gi|75077302|sp|Q4R979.1|RBM4_MACFA RecName: Full=RNA-binding protein 4; AltName: Full=RNA-binding
motif protein 4
gi|12653083|gb|AAH00307.1| RNA binding motif protein 4 [Homo sapiens]
gi|21618467|gb|AAH32735.1| RNA binding motif protein 4 [Homo sapiens]
gi|67967719|dbj|BAE00342.1| unnamed protein product [Macaca fascicularis]
gi|167774193|gb|ABZ92531.1| RNA binding motif protein 4 [synthetic construct]
gi|193783581|dbj|BAG53492.1| unnamed protein product [Homo sapiens]
gi|261859218|dbj|BAI46131.1| RNA binding motif protein 14 [synthetic construct]
gi|343958742|dbj|BAK63226.1| RNA binding motif protein 4 [Pan troglodytes]
gi|355566266|gb|EHH22645.1| RNA-binding motif protein 4 [Macaca mulatta]
gi|380784029|gb|AFE63890.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|383409025|gb|AFH27726.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|384942564|gb|AFI34887.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|410222926|gb|JAA08682.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410222932|gb|JAA08685.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410222940|gb|JAA08689.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254448|gb|JAA15191.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254452|gb|JAA15193.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410295006|gb|JAA26103.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352741|gb|JAA42974.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352747|gb|JAA42977.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352751|gb|JAA42979.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352753|gb|JAA42980.1| RNA binding motif protein 4 [Pan troglodytes]
Length = 364
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|431910217|gb|ELK13290.1| RNA-binding protein 4 [Pteropus alecto]
Length = 365
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|116004239|ref|NP_001070478.1| RNA-binding protein 4 [Bos taurus]
gi|91207336|sp|Q3MHX3.1|RBM4_BOVIN RecName: Full=RNA-binding protein 4; AltName: Full=RNA-binding
motif protein 4; AltName: Full=RNA-binding motif protein
4a
gi|75775098|gb|AAI04571.1| RNA binding motif protein 4 [Bos taurus]
gi|146231708|gb|ABQ12929.1| RNA binding motif protein 4 [Bos taurus]
gi|296471486|tpg|DAA13601.1| TPA: RNA-binding protein 4 [Bos taurus]
gi|440899389|gb|ELR50692.1| RNA-binding protein 4 [Bos grunniens mutus]
Length = 362
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|73982920|ref|XP_852303.1| PREDICTED: RNA-binding protein 4 isoform 1 [Canis lupus familiaris]
gi|301784859|ref|XP_002927840.1| PREDICTED: RNA-binding protein 4-like isoform 1 [Ailuropoda
melanoleuca]
gi|301784861|ref|XP_002927841.1| PREDICTED: RNA-binding protein 4-like isoform 2 [Ailuropoda
melanoleuca]
gi|410974610|ref|XP_003993736.1| PREDICTED: RNA-binding protein 4 [Felis catus]
gi|281346284|gb|EFB21868.1| hypothetical protein PANDA_017684 [Ailuropoda melanoleuca]
Length = 365
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|395851691|ref|XP_003798386.1| PREDICTED: RNA-binding protein 4 [Otolemur garnettii]
Length = 365
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|291385477|ref|XP_002709280.1| PREDICTED: RNA binding motif protein 4B-like [Oryctolagus
cuniculus]
Length = 365
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|351710884|gb|EHB13803.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 318
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|149725614|ref|XP_001496788.1| PREDICTED: RNA-binding protein 4 isoform 1 [Equus caballus]
gi|338712238|ref|XP_003362679.1| PREDICTED: RNA-binding protein 4 isoform 2 [Equus caballus]
Length = 361
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|426252104|ref|XP_004019758.1| PREDICTED: RNA-binding protein 4B isoform 1 [Ovis aries]
Length = 365
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|148222587|ref|NP_001079614.1| RNA binding motif protein 14 [Xenopus laevis]
gi|80477004|gb|AAI08787.1| MGC52864 protein [Xenopus laevis]
Length = 467
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 4/109 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM EE A+++LNG+ +N K + +E + R P T K+FVGN+S + E+R++
Sbjct: 47 HMRGAEEATKAVEDLNGRELNGKKMLVELSKPR--PQN-TWKIFVGNVSSSCEGSEIRKI 103
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA 112
F YG VVECDIV++Y FVH+ + I+ LNG + GK + V ++
Sbjct: 104 FEEYGRVVECDIVKDYAFVHMTRESEARAAIEALNGKEIKGKRINVEMS 152
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
K+FVGN+ D T E+ ELF YGTVV C +++ Y FVH+ + + K +++LNG ++G
Sbjct: 9 KIFVGNVDDRTTQEEITELFERYGTVVNCAVMKQYAFVHMRGAEEATKAVEDLNGRELNG 68
Query: 105 KPMKVVVA 112
K M V ++
Sbjct: 69 KKMLVELS 76
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T+KIF+GNV+ IR +FE+YG+VVECD+VK+Y FV
Sbjct: 83 TWKIFVGNVSSSCEGSEIRKIFEEYGRVVECDIVKDYAFV 122
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 299 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MP + KIF+GNV+ T+ E I LFE+YG VV C V+K Y FV
Sbjct: 1 MPNYDE--RMKIFVGNVDDRTTQEEITELFERYGTVVNCAVMKQYAFV 46
>gi|57099639|ref|XP_533216.1| PREDICTED: RNA-binding protein 4B isoform 1 [Canis lupus
familiaris]
Length = 359
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|301784857|ref|XP_002927839.1| PREDICTED: RNA-binding protein 4B-like [Ailuropoda melanoleuca]
gi|281346283|gb|EFB21867.1| hypothetical protein PANDA_017683 [Ailuropoda melanoleuca]
Length = 359
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|178056236|ref|NP_001116660.1| RNA-binding protein 4B [Sus scrofa]
gi|122131878|sp|Q06AT9.1|RBM4B_PIG RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|115394774|gb|ABI97181.1| RBM30 [Sus scrofa]
Length = 359
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|126723790|ref|NP_001075548.1| RNA-binding protein 4 [Oryctolagus cuniculus]
gi|62511088|sp|Q9BDY9.1|RBM4_RABIT RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
AltName: Full=RNA-binding motif protein 4
gi|13182931|gb|AAK14991.1|AF233063_1 RNA-binding protein lark [Oryctolagus cuniculus]
Length = 359
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|444510189|gb|ELV09524.1| RNA-binding protein 4B [Tupaia chinensis]
Length = 357
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|348565071|ref|XP_003468327.1| PREDICTED: RNA-binding protein 4B-like [Cavia porcellus]
Length = 358
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|431910216|gb|ELK13289.1| RNA-binding protein 4B [Pteropus alecto]
Length = 359
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|13899354|ref|NP_113680.1| RNA-binding protein 4B [Homo sapiens]
gi|109105261|ref|XP_001109453.1| PREDICTED: RNA-binding protein 4B-like [Macaca mulatta]
gi|114638751|ref|XP_508578.2| PREDICTED: RNA-binding protein 4B isoform 2 [Pan troglodytes]
gi|297688065|ref|XP_002821512.1| PREDICTED: RNA-binding protein 4B [Pongo abelii]
gi|397517079|ref|XP_003828747.1| PREDICTED: RNA-binding protein 4B [Pan paniscus]
gi|402892714|ref|XP_003909554.1| PREDICTED: RNA-binding protein 4B [Papio anubis]
gi|426369353|ref|XP_004051657.1| PREDICTED: RNA-binding protein 4B isoform 1 [Gorilla gorilla
gorilla]
gi|62511129|sp|Q9BQ04.1|RBM4B_HUMAN RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|13097558|gb|AAH03503.1| RNA binding motif protein 4B [Homo sapiens]
gi|13436323|gb|AAH04951.1| RNA binding motif protein 4B [Homo sapiens]
gi|119594964|gb|EAW74558.1| RNA binding motif protein 4B [Homo sapiens]
gi|193787792|dbj|BAG52995.1| unnamed protein product [Homo sapiens]
gi|208967358|dbj|BAG73693.1| RNA binding motif protein 4B [synthetic construct]
gi|325464201|gb|ADZ15871.1| RNA binding motif protein 4B [synthetic construct]
gi|355566265|gb|EHH22644.1| RNA-binding motif protein 4B [Macaca mulatta]
gi|355751922|gb|EHH56042.1| RNA-binding motif protein 4B [Macaca fascicularis]
Length = 359
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|410974612|ref|XP_003993737.1| PREDICTED: RNA-binding protein 4B [Felis catus]
Length = 359
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|363746234|ref|XP_003643577.1| PREDICTED: RNA-binding protein 4B-like, partial [Gallus gallus]
Length = 242
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHHKLHGVCINVEAS---KNKSKASTKLHVGNISPTCTNLELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M+V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMRVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DKSGCYRCGKEGHWSKECP 176
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VCINVEASKNKSKASTKLHV 82
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
S + K+ +GN++P + +R FE+YG V+ECD+VK+Y FV
Sbjct: 74 SKASTKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKDYAFV 116
>gi|34495359|gb|AAQ73500.1| zinc responsive protein ZD7 [Rattus norvegicus]
Length = 357
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|149725616|ref|XP_001496839.1| PREDICTED: RNA-binding protein 4B-like [Equus caballus]
Length = 359
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|426252100|ref|XP_004019756.1| PREDICTED: RNA-binding protein 4 isoform 1 [Ovis aries]
Length = 361
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|55926188|ref|NP_001007015.2| RNA-binding protein 4B [Rattus norvegicus]
gi|62510948|sp|Q64LC9.2|RBM4B_RAT RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30;
AltName: Full=Zinc-responsive protein ZD7
gi|55562771|gb|AAH86416.1| RNA binding motif protein 4B [Rattus norvegicus]
gi|149061999|gb|EDM12422.1| rCG48244, isoform CRA_a [Rattus norvegicus]
gi|149062000|gb|EDM12423.1| rCG48244, isoform CRA_a [Rattus norvegicus]
Length = 357
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|28302297|gb|AAH46684.1| LOC398498 protein, partial [Xenopus laevis]
Length = 531
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM E A++ELNG+ +N K + +E + R P T K+FVGN+S + A E+R++
Sbjct: 107 HMRGTREATKAVEELNGRELNGKKMLVELSKPR--PQN-TWKIFVGNVSSSCEAAEIRKI 163
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGFI 115
F YG V+ECDIV++Y FVH+ + I+ LNG + GK + V ++ +
Sbjct: 164 FEEYGRVLECDIVKDYAFVHMTRESEARAAIEALNGKDIKGKRINVEMSNKV 215
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 33 AATSRKGPNTPT-TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDI 90
AA SR P++ K+FVGN+ + T EV LF YG V+ C ++R Y FVH+ + +
Sbjct: 55 AAYSRLMPHSEERMKIFVGNIDERTSEGEVTALFERYGAVLNCAVMRQYAFVHMRGTREA 114
Query: 91 NKCIKELNGMMVDGKPMKVVVA 112
K ++ELNG ++GK M V ++
Sbjct: 115 TKAVEELNGRELNGKKMLVELS 136
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T+KIF+GNV+ IR +FE+YG+V+ECD+VK+Y FV
Sbjct: 143 TWKIFVGNVSSSCEAAEIRKIFEEYGRVLECDIVKDYAFV 182
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 253 FGLILIPRSQIESLDLCGHFKQTKTTIVWSPRYQSFGTVVVIEARNMPGFSSVGTFKIFI 312
GL++ PR DL S R S VV +R MP S KIF+
Sbjct: 21 LGLLIPPR------DLTVKLNLVAAVSCDSRRSLSLRVVVAAYSRLMP--HSEERMKIFV 72
Query: 313 GNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
GN++ TS + LFE+YG V+ C V++ Y FV
Sbjct: 73 GNIDERTSEGEVTALFERYGAVLNCAVMRQYAFV 106
>gi|27754120|ref|NP_079993.2| RNA-binding protein 4B [Mus musculus]
gi|62511125|sp|Q8VE92.1|RBM4B_MOUSE RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|18044496|gb|AAH19488.1| RNA binding motif protein 4B [Mus musculus]
gi|148701119|gb|EDL33066.1| mCG8380, isoform CRA_a [Mus musculus]
gi|148701120|gb|EDL33067.1| mCG8380, isoform CRA_a [Mus musculus]
Length = 357
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|332249630|ref|XP_003273961.1| PREDICTED: RNA-binding protein 4B isoform 1 [Nomascus leucogenys]
Length = 359
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|126338772|ref|XP_001364800.1| PREDICTED: RNA-binding protein 4B-like [Monodelphis domestica]
Length = 365
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISSACTNLELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRALFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRALFEQYGKVLECDIIKNYGFV 40
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++ + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISSACTNLELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|114052178|ref|NP_001039393.1| RNA-binding protein 4B [Bos taurus]
gi|86438058|gb|AAI12498.1| RNA binding motif protein 4B [Bos taurus]
gi|296471585|tpg|DAA13700.1| TPA: RNA binding motif protein 4B [Bos taurus]
Length = 359
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|354496142|ref|XP_003510186.1| PREDICTED: RNA-binding protein 4B [Cricetulus griseus]
gi|344250269|gb|EGW06373.1| RNA-binding protein 4B [Cricetulus griseus]
Length = 357
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|403301169|ref|XP_003941271.1| PREDICTED: RNA-binding protein 4B [Saimiri boliviensis boliviensis]
Length = 359
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRTK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRTKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|395851687|ref|XP_003798384.1| PREDICTED: RNA-binding protein 4B [Otolemur garnettii]
Length = 359
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|432091076|gb|ELK24288.1| RNA-binding protein 4B [Myotis davidii]
Length = 357
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|380817026|gb|AFE80387.1| RNA-binding protein 4B [Macaca mulatta]
gi|384949730|gb|AFI38470.1| RNA-binding protein 4B [Macaca mulatta]
gi|410254450|gb|JAA15192.1| RNA binding motif protein 4B [Pan troglodytes]
gi|410295008|gb|JAA26104.1| RNA binding motif protein 4B [Pan troglodytes]
gi|410352743|gb|JAA42975.1| RNA binding motif protein 4B [Pan troglodytes]
Length = 359
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|158259071|dbj|BAF85494.1| unnamed protein product [Homo sapiens]
Length = 364
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPACTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPACTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|410222930|gb|JAA08684.1| RNA binding motif protein 4B [Pan troglodytes]
Length = 359
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|149491652|ref|XP_001512914.1| PREDICTED: RNA-binding protein 4B-like isoform 1 [Ornithorhynchus
anatinus]
Length = 365
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNMELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNMELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|50415109|gb|AAH77356.1| LOC398498 protein [Xenopus laevis]
Length = 471
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM E A++ELNG+ +N K + +E + R P T K+FVGN+S + A E+R++
Sbjct: 47 HMRGTREATKAVEELNGRELNGKKMLVELSKPR--PQN-TWKIFVGNVSSSCEAAEIRKI 103
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGFI 115
F YG V+ECDIV++Y FVH+ + I+ LNG + GK + V ++ +
Sbjct: 104 FEEYGRVLECDIVKDYAFVHMTRESEARAAIEALNGKDIKGKRINVEMSNKV 155
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
K+FVGN+ + T EV LF YG V+ C ++R Y FVH+ + + K ++ELNG ++G
Sbjct: 9 KIFVGNIDERTSEGEVTALFERYGAVLNCAVMRQYAFVHMRGTREATKAVEELNGRELNG 68
Query: 105 KPMKVVVA 112
K M V ++
Sbjct: 69 KKMLVELS 76
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T+KIF+GNV+ IR +FE+YG+V+ECD+VK+Y FV
Sbjct: 83 TWKIFVGNVSSSCEAAEIRKIFEEYGRVLECDIVKDYAFV 122
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 308 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GN++ TS + LFE+YG V+ C V++ Y FV
Sbjct: 8 MKIFVGNIDERTSEGEVTALFERYGAVLNCAVMRQYAFV 46
>gi|395544458|ref|XP_003774127.1| PREDICTED: RNA-binding protein 4 [Sarcophilus harrisii]
Length = 364
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNLELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNLELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|348544593|ref|XP_003459765.1| PREDICTED: RNA-binding protein 4.1-like [Oreochromis niloticus]
Length = 380
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 76/157 (48%), Gaps = 9/157 (5%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM N E AIK L+ ++ + +E + KG TTK+ V NL + + +R
Sbjct: 41 HMSNMSEAEEAIKNLHQHQLHGWRMNVEMS---KGRPKSTTKLHVSNLGEGVTSEVLRAR 97
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F +G VVECDIV++Y FVH++ D + I L+ GK M V ++ + +
Sbjct: 98 FEEFGPVVECDIVKDYAFVHMERVEDAMEAISNLDNTAFKGKLMSVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKSKSSH 159
N CG+ GHWSK+CP N G Y S H
Sbjct: 158 NHTGCFVCGKHGHWSKDCPVGRN----GSYSDSMRGH 190
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+F+GNL+ N A E+RELF YG V ECDIV+NYGFVH+ + + + IK L+ + G
Sbjct: 3 KIFIGNLACNATAEELRELFEKYGKVTECDIVKNYGFVHMSNMSEAEEAIKNLHQHQLHG 62
Query: 105 KPMKVVVA 112
M V ++
Sbjct: 63 WRMNVEMS 70
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 30/38 (78%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIFIGN+ + E +R LFEKYGKV ECD+VKNYGFV
Sbjct: 3 KIFIGNLACNATAEELRELFEKYGKVTECDIVKNYGFV 40
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T K+ + N+ G + E++R FE++G VVECD+VK+Y FV
Sbjct: 77 TTKLHVSNLGEGVTSEVLRARFEEFGPVVECDIVKDYAFV 116
>gi|449279129|gb|EMC86791.1| RNA-binding protein 4, partial [Columba livia]
Length = 250
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHHKLHGVCINVEAS---KNKSKASTKLHVGNISPACTNMELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M+V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMRVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DKSGCYRCGKEGHWSKECP 176
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VCINVEASKNKSKASTKLHV 82
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
S + K+ +GN++P + +R FE+YG V+ECD+VK+Y FV
Sbjct: 74 SKASTKLHVGNISPACTNMELRAKFEEYGPVIECDIVKDYAFV 116
>gi|2078531|gb|AAC53171.1| Mlark [Mus musculus]
Length = 367
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA S + K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKN---KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|327289700|ref|XP_003229562.1| PREDICTED: RNA-binding protein 4B-like [Anolis carolinensis]
Length = 354
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVCINVEAS---KNKSKASTKLHVGNISTGCTNLELRFK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M+V ++ + +
Sbjct: 98 FEEYGPVLECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMRVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DKSGCYRCGKEGHWSKECP 176
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGRVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VCINVEASKNKSKASTKLHV 82
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YG+V+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGRVLECDIIKNYGFV 40
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++ G + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVCINVEASKNKSKAST---KLHVGNISTGCTNLELRFKFEEYGPVLECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|45360753|ref|NP_989050.1| RNA binding motif protein 14 [Xenopus (Silurana) tropicalis]
gi|38174074|gb|AAH61344.1| RNA binding motif protein 14 [Xenopus (Silurana) tropicalis]
gi|89269922|emb|CAJ81697.1| novel protein containing RNA recognition motifs. (a.k.a. RRM, RBD,
or RNP domain) [Xenopus (Silurana) tropicalis]
Length = 468
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 67/109 (61%), Gaps = 4/109 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM EE A+++LNG+ +N K + +E + R P T K+FVGN+S + E+R++
Sbjct: 47 HMRGSEEATKAVEDLNGRELNGKKMLVELSKPR--PQN-TWKIFVGNVSSSCEVSEIRKM 103
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVA 112
F +G VVECDIV++Y FVH+ ++ I+ LNG V GK + V ++
Sbjct: 104 FEEHGRVVECDIVKDYAFVHMTRESESRAAIEALNGKEVKGKRINVEMS 152
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
K+FVGN+ D+T E+ ELF YGTVV C +++ Y FVH+ S + K +++LNG ++G
Sbjct: 9 KIFVGNVDDSTTQEEITELFERYGTVVNCAVMKQYAFVHMRGSEEATKAVEDLNGRELNG 68
Query: 105 KPMKVVVA 112
K M V ++
Sbjct: 69 KKMLVELS 76
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T+KIF+GNV+ V IR +FE++G+VVECD+VK+Y FV
Sbjct: 82 NTWKIFVGNVSSSCEVSEIRKMFEEHGRVVECDIVKDYAFV 122
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 299 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MP + KIF+GNV+ T+ E I LFE+YG VV C V+K Y FV
Sbjct: 1 MPNYDE--RMKIFVGNVDDSTTQEEITELFERYGTVVNCAVMKQYAFV 46
>gi|2078529|gb|AAC51293.1| Hlark [Homo sapiens]
Length = 366
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|291231291|ref|XP_002735598.1| PREDICTED: RNA binding motif protein 4B-like isoform 1
[Saccoglossus kowalevskii]
Length = 238
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMV 102
TKVFVGNLS + ++ ++R+LF YG V+ECD+++NYGFVH+D D K + LN
Sbjct: 8 ATKVFVGNLSKSVQSRDLRDLFEKYGKVLECDVIKNYGFVHMDKEDEAKEALDALNSKEF 67
Query: 103 DGKPMKVVVA-GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSG 150
G +KV ++ + + +CGR GHWS++C R + G
Sbjct: 68 MGTNIKVELSTSRVHKTPGMGSKGECFKCGRQGHWSRDCGRDRSVEDRG 116
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 30/38 (78%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+GN++ +R LFEKYGKV+ECDV+KNYGFV
Sbjct: 10 KVFVGNLSKSVQSRDLRDLFEKYGKVLECDVIKNYGFV 47
>gi|410906769|ref|XP_003966864.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 379
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 115/256 (44%), Gaps = 39/256 (15%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM N E AIK LN ++ + +E + KG TTK+ V NL + + +R
Sbjct: 41 HMSNVSEAEEAIKNLNQHQLHGWRMNVELS---KGRPKSTTKLHVSNLGEGVTSDVLRAR 97
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F +G VVECDIV++Y FVH++ D + I++++ GK M V ++ + +
Sbjct: 98 FQEFGPVVECDIVKDYAFVHMERMEDAMEAIEKMDNTAFKGKLMSVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKSKSSHKIYQDALVLWEDQDLWTGLVKGT 182
+ CG+ GHWSK+CP R+SG +S+S ++ ++ +
Sbjct: 158 SHTGCYVCGKHGHWSKDCPVG---RNSGDGARSRSG-RVPSRGPPAYDRGNYG------- 206
Query: 183 SDLVVVIASPIHQAHCDSFLCCSRRFGAVGG-PGPLDRFG---------YPREAYPRDPY 232
+A P+ + S R G VGG P P R G YPR A P
Sbjct: 207 ------MAPPMGAEYMGSEY---NRLGYVGGFPPPPHRSGVYTSELGGRYPRAA----PC 253
Query: 233 PPPPPPSFLRDRMMGG 248
PP + RD++ GG
Sbjct: 254 PPQRSAVYDRDQLYGG 269
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+F+GNL+ E+RELF YG V ECDIV+NYGFVH+ + + + IK LN + G
Sbjct: 3 KIFIGNLTCTATPQELRELFEKYGKVTECDIVKNYGFVHMSNVSEAEEAIKNLNQHQLHG 62
Query: 105 KPMKVVVA 112
M V ++
Sbjct: 63 WRMNVELS 70
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 30/38 (78%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIFIGN+ + + +R LFEKYGKV ECD+VKNYGFV
Sbjct: 3 KIFIGNLTCTATPQELRELFEKYGKVTECDIVKNYGFV 40
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T K+ + N+ G + +++R F+++G VVECD+VK+Y FV
Sbjct: 77 TTKLHVSNLGEGVTSDVLRARFQEFGPVVECDIVKDYAFV 116
>gi|291231293|ref|XP_002735599.1| PREDICTED: RNA binding motif protein 4B-like isoform 2
[Saccoglossus kowalevskii]
Length = 237
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMV 102
TKVFVGNLS + ++ ++R+LF YG V+ECD+++NYGFVH+D D K + LN
Sbjct: 8 ATKVFVGNLSKSVQSRDLRDLFEKYGKVLECDVIKNYGFVHMDKEDEAKEALDALNSKEF 67
Query: 103 DGKPMKVVVA-GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSG 150
G +KV ++ + + +CGR GHWS++C R + G
Sbjct: 68 MGTNIKVELSTSRVHKTPGMGSKGECFKCGRQGHWSRDCGRDRSVEDRG 116
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 30/38 (78%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+GN++ +R LFEKYGKV+ECDV+KNYGFV
Sbjct: 10 KVFVGNLSKSVQSRDLRDLFEKYGKVLECDVIKNYGFV 47
>gi|291190904|ref|NP_001167419.1| RNA-binding protein 4 [Salmo salar]
gi|223648750|gb|ACN11133.1| RNA-binding protein 4 [Salmo salar]
Length = 316
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 4/109 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM +EE + A+ EL+ +N + +E AT++ TK++VGN+ + T A ++REL
Sbjct: 41 HMNEEEEAQKAVAELHKHELNGARITVEFATTKV---RNATKIYVGNVPEGTTAAKIREL 97
Query: 65 FVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
F P+G VVECDIV+N+ FVH+ + + I +LN ++G+ + V ++
Sbjct: 98 FQPFGKVVECDIVKNFAFVHMQRENEAYEAISKLNHSKMEGQKIFVSIS 146
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+FVGN++ +T E+R LF YG V +CDI++NYGFVH+ + + K + EL+ ++G
Sbjct: 3 KIFVGNVNSSTTESELRTLFEKYGQVSDCDILKNYGFVHMNEEEEAQKAVAELHKHELNG 62
Query: 105 KPMKVVVA 112
+ V A
Sbjct: 63 ARITVEFA 70
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GNVN T+ +R LFEKYG+V +CD++KNYGFV
Sbjct: 3 KIFVGNVNSSTTESELRTLFEKYGQVSDCDILKNYGFV 40
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 30/38 (78%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KI++GNV GT+ IR LF+ +GKVVECD+VKN+ FV
Sbjct: 79 KIYVGNVPEGTTAAKIRELFQPFGKVVECDIVKNFAFV 116
>gi|387018162|gb|AFJ51199.1| RNA-binding protein 14-like [Crotalus adamanteus]
Length = 596
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 13/121 (10%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+ N+ AI++LNG +++ + + +E SR P T T K+FVGN+S + E+R L
Sbjct: 46 HLRNEAAAERAIQKLNGHLLHYRRVFLE--FSRPRP-THTVKIFVGNVSATCTSGELRVL 102
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVV---------VAGF 114
F +G V+ECDIV++Y FVH++ D I+ LNG + GK + V VAG+
Sbjct: 103 FQEFGPVIECDIVKDYAFVHMEKDEDARTAIEHLNGREIKGKRINVELSNKAHKRGVAGY 162
Query: 115 I 115
I
Sbjct: 163 I 163
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 30/40 (75%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T KIF+GNV+ + +R LF+++G V+ECD+VK+Y FV
Sbjct: 82 TVKIFVGNVSATCTSGELRVLFQEFGPVIECDIVKDYAFV 121
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELF---VPYGTVVECDIVRNYGFVHI-DSPDINKCIKELN 98
P KVFVGN+ + E+R+LF VP G VV+ + Y FVH+ + + I++LN
Sbjct: 3 PGVKVFVGNVPEEASQAELRDLFEAAVP-GEVVKVVLKEQYAFVHLRNEAAAERAIQKLN 61
Query: 99 GMMV 102
G ++
Sbjct: 62 GHLL 65
>gi|47209606|emb|CAF93001.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1197
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 74/149 (49%), Gaps = 17/149 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM N E AIK LN ++ + +E + KG TTK+ V NL + + +R
Sbjct: 860 HMSNMSEAEEAIKNLNQHQLHGWRMNVELS---KGRPKSTTKLHVSNLGEGVTSDVLRAR 916
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV-------AGFIS 116
F +G VVECDIV++Y FVH++ D + I++++ GK M V + A +
Sbjct: 917 FEEFGPVVECDIVKDYAFVHMERMEDAMEAIEKMDNTAFKGKLMSVQLSTSRLRTAPGMG 976
Query: 117 SILSCLNVIFFIRCGRGGHWSKECPRAGN 145
S C CG+ GHWSK+CP N
Sbjct: 977 SHTGCY------VCGKHGHWSKDCPVGRN 999
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+F+GNL+ E+RELF YG V ECDIV+NYGFVH+ + + + IK LN + G
Sbjct: 822 KIFIGNLTCTATPQELRELFEKYGKVTECDIVKNYGFVHMSNMSEAEEAIKNLNQHQLHG 881
Query: 105 KPMKVVVA 112
M V ++
Sbjct: 882 WRMNVELS 889
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%)
Query: 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
S+ KIFIGN+ + + +R LFEKYGKV ECD+VKNYGFV
Sbjct: 817 SITMVKIFIGNLTCTATPQELRELFEKYGKVTECDIVKNYGFV 859
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T K+ + N+ G + +++R FE++G VVECD+VK+Y FV
Sbjct: 895 STTKLHVSNLGEGVTSDVLRARFEEFGPVVECDIVKDYAFV 935
>gi|226372036|gb|ACO51643.1| RNA-binding protein 4B [Rana catesbeiana]
Length = 328
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 74/139 (53%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HME+ + A+ LN ++ + +E + +G +TK+ V +LS + E+RE
Sbjct: 41 HMEDKKSADEAVNNLNQCKLHGVSINVEHS---RGKPRASTKLHVSSLSTDCTGDELREK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCL- 122
F YG V+ECDIV++Y FVH++ + + + I+ LN + GK M V ++ + +
Sbjct: 98 FEEYGGVLECDIVKDYAFVHMEKAEEALEAIRNLNNLEFKGKKMHVQLSTSRLRVTPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
RCG+ GHWS CP
Sbjct: 158 EQSRCYRCGKNGHWSGMCP 176
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+FVGNL E++ LF +G V ECDI+ NY FVH+ D ++ + LN + G
Sbjct: 3 KLFVGNLPPAATQTELKSLFEQFGKVSECDIITNYAFVHMEDKKSADEAVNNLNQCKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VSINV 67
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+GN+ P + ++ LFE++GKV ECD++ NY FV
Sbjct: 3 KLFVGNLPPAATQTELKSLFEQFGKVSECDIITNYAFV 40
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 290 TVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
++ V +R P S+ K+ + +++ + + +R FE+YG V+ECD+VK+Y FV
Sbjct: 64 SINVEHSRGKPRAST----KLHVSSLSTDCTGDELREKFEEYGGVLECDIVKDYAFV 116
>gi|327290511|ref|XP_003229966.1| PREDICTED: RNA-binding protein 14-like [Anolis carolinensis]
Length = 607
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+ ++ AI +LNGQ+V+ + +E SR P T T K+FVGN+S + E+R L
Sbjct: 46 HLRDEAAADRAIAKLNGQLVHGHRVVVE--HSRPRP-THTVKIFVGNVSATCTSGELRAL 102
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
F +G VVECD V++Y FVH++ D I+ LNG V G+ + V
Sbjct: 103 FQEFGPVVECDTVKDYAFVHMEKDEDAAAAIEHLNGREVKGRRINV 148
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 291 VVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
VVV +R P T KIF+GNV+ + +R LF+++G VVECD VK+Y FV
Sbjct: 70 VVVEHSRPRP----THTVKIFVGNVSATCTSGELRALFQEFGPVVECDTVKDYAFV 121
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 46 KVFVGNLSDNTRAPEVRELF--VPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMV 102
KVFVGN+ + T E+R+LF V G V++ +++ + FVH+ D ++ I +LNG +V
Sbjct: 6 KVFVGNVPEETSQVELRDLFQAVEPGAVLKVALMKQFAFVHLRDEAAADRAIAKLNGQLV 65
Query: 103 DGKPMKVVV 111
G +VVV
Sbjct: 66 HGH--RVVV 72
>gi|339522325|gb|AEJ84327.1| RNA-binding protein 4 [Capra hircus]
Length = 362
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 76/145 (52%), Gaps = 17/145 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H E+ AI+ L+ ++ + + A+T++ + +TK+ VGN+S E+R
Sbjct: 41 HREDKPAAEDAIRNLHHYKLHGVNINVGASTNK---SKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGK-------PMKVVVAGFIS 116
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK P ++ A +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHGQLSPSRLRTAPGMG 157
Query: 117 SILSCLNVIFFIRCGRGGHWSKECP 141
+ C RCG+ GHWSKECP
Sbjct: 158 AQGGCY------RCGKEGHWSKECP 176
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++N+GFVH D P I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNHGFVHREDKPAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVGASTNKSKTSTKLHV 82
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KN+GFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNHGFV 40
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
S + K+ +GN++P + + +R FE+YG V+ECD+VK+Y FV
Sbjct: 74 SKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFV 116
>gi|45387723|ref|NP_991217.1| uncharacterized protein LOC402952 [Danio rerio]
gi|41351185|gb|AAH65633.1| Zgc:77262 [Danio rerio]
Length = 331
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 65/109 (59%), Gaps = 4/109 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM+ +E + A+ L+ VN + +E AT++ TK++VGN+ + A +++EL
Sbjct: 41 HMDEEEAAQKAVSALHKHEVNGSRITVEYATTKV---RNATKIYVGNVPEGVAAAKIKEL 97
Query: 65 FVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
F P+G VVECDIV+NY FVH+ + I +LN VDG+ + V ++
Sbjct: 98 FQPFGKVVECDIVKNYAFVHMQRENEALDAIAKLNHSKVDGQKIFVSLS 146
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMVDG 104
K+FVGN++ T E+R LF YG V +CDI++NYGFVH+D + K + L+ V+G
Sbjct: 3 KIFVGNVASATTEDELRALFEKYGAVSDCDILKNYGFVHMDEEEAAQKAVSALHKHEVNG 62
Query: 105 KPMKVVVA 112
+ V A
Sbjct: 63 SRITVEYA 70
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 30/38 (78%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GNV T+ + +R LFEKYG V +CD++KNYGFV
Sbjct: 3 KIFVGNVASATTEDELRALFEKYGAVSDCDILKNYGFV 40
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KI++GNV G + I+ LF+ +GKVVECD+VKNY FV
Sbjct: 79 KIYVGNVPEGVAAAKIKELFQPFGKVVECDIVKNYAFV 116
>gi|405974565|gb|EKC39200.1| RNA-binding protein 4 [Crassostrea gigas]
Length = 226
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIK-ELN 98
P + +TK+++GNL + R +++++F YG V+ECDIVRNY F+H ++P+ K + L+
Sbjct: 2 PPSISTKLYIGNLPETCRKADLQKMFEAYGKVIECDIVRNYCFIHFENPNEAKMAQANLD 61
Query: 99 GMMVDGKPMKVVVA-GFISSILSCLNVIFFIRCGRGGHWSKECPRA 143
G+ +G +KV ++ + RCG+ GHWSK+CP+
Sbjct: 62 GVDFEGVKLKVEMSHSKVRQKPGMGGKGECYRCGKEGHWSKDCPKG 107
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K++IGN+ ++ +FE YGKV+ECD+V+NY F+
Sbjct: 8 KLYIGNLPETCRKADLQKMFEAYGKVIECDIVRNYCFI 45
>gi|45595611|gb|AAH67187.1| Rbm4.2 protein [Danio rerio]
Length = 384
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ +E AI++L+ + + + +E + KG +TK+ V N+S E+R
Sbjct: 41 HMDSKKEAEAAIRKLHHYELKGQAINVELS---KGKPRGSTKLHVSNISSGCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG VVECDIV++Y FVH++ D + I L GK +KV ++ + +
Sbjct: 98 FEEYGPVVECDIVKDYAFVHMERMDDAMEAISGLENTTFQGKLIKVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECPRAGN 145
+ CG GHWSK+C + N
Sbjct: 158 DQTGCYICGEQGHWSKDCRHSQN 180
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+F+GNLS + A ++R LF +G V ECD+++NYGFVH+DS + I++L+ + G
Sbjct: 3 KIFIGNLSPTSTADDLRSLFSEFGIVKECDVLKNYGFVHMDSKKEAEAAIRKLHHYELKG 62
Query: 105 KPMKVVVA 112
+ + V ++
Sbjct: 63 QAINVELS 70
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIFIGN++P ++ + +R LF ++G V ECDV+KNYGFV
Sbjct: 3 KIFIGNLSPTSTADDLRSLFSEFGIVKECDVLKNYGFV 40
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 273 KQTKTTIVWSPRYQSFGTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKY 331
K+ + I Y+ G + +E ++ P G+ K+ + N++ G + + +R FE+Y
Sbjct: 46 KEAEAAIRKLHHYELKGQAINVELSKGKP----RGSTKLHVSNISSGCTNQELRAKFEEY 101
Query: 332 GKVVECDVVKNYGFV 346
G VVECD+VK+Y FV
Sbjct: 102 GPVVECDIVKDYAFV 116
>gi|41054431|ref|NP_955971.1| RNA binding motif protein 4 like [Danio rerio]
gi|27881945|gb|AAH44503.1| RNA binding motif protein 4.2 [Danio rerio]
gi|157423277|gb|AAI53458.1| Rbm4.2 protein [Danio rerio]
gi|182890716|gb|AAI65179.1| Rbm4.2 protein [Danio rerio]
Length = 385
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ +E AI++L+ + + + +E + KG +TK+ V N+S E+R
Sbjct: 41 HMDSKKEAEAAIRKLHHYELKGQAINVELS---KGKPRGSTKLHVSNISSGCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG VVECDIV++Y FVH++ D + I L GK +KV ++ + +
Sbjct: 98 FEEYGPVVECDIVKDYAFVHMERMDDAMEAISGLENTTFQGKLIKVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECPRAGN 145
+ CG GHWSK+C + N
Sbjct: 158 DQTGCYICGEQGHWSKDCRHSQN 180
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+F+GNLS + A ++R LF +G V ECD+++NYGFVH+DS + I++L+ + G
Sbjct: 3 KIFIGNLSPTSTADDLRSLFSEFGIVKECDVLKNYGFVHMDSKKEAEAAIRKLHHYELKG 62
Query: 105 KPMKVVVA 112
+ + V ++
Sbjct: 63 QAINVELS 70
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIFIGN++P ++ + +R LF ++G V ECDV+KNYGFV
Sbjct: 3 KIFIGNLSPTSTADDLRSLFSEFGIVKECDVLKNYGFV 40
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 273 KQTKTTIVWSPRYQSFGTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKY 331
K+ + I Y+ G + +E ++ P G+ K+ + N++ G + + +R FE+Y
Sbjct: 46 KEAEAAIRKLHHYELKGQAINVELSKGKP----RGSTKLHVSNISSGCTNQELRAKFEEY 101
Query: 332 GKVVECDVVKNYGFV 346
G VVECD+VK+Y FV
Sbjct: 102 GPVVECDIVKDYAFV 116
>gi|169646279|ref|NP_001108616.1| RNA binding motif protein 14 [Danio rerio]
gi|194332550|ref|NP_001123764.1| uncharacterized protein LOC100170513 [Xenopus (Silurana)
tropicalis]
gi|63100727|gb|AAH95368.1| Zgc:110682 [Danio rerio]
gi|163915521|gb|AAI57377.1| Zgc:110682 protein [Danio rerio]
gi|189441765|gb|AAI67521.1| LOC100170513 protein [Xenopus (Silurana) tropicalis]
Length = 471
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 77/145 (53%), Gaps = 15/145 (10%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H++ + +AI++LNG+ + L +E + KG +TKVFVGNL + ++ +L
Sbjct: 46 HLQGEGAADSAIRDLNGREYRGRSLVVEES---KGRPLNSTKVFVGNLCASCSVEDLYDL 102
Query: 65 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGFIS 116
F PYG V++CD V+ Y FV+++ D + I+ L+G G+P+ V +S
Sbjct: 103 FSPYGKVLDCDKVKTKPSSLTGYAFVYMEHKEDAEQAIEGLHGTTFMGRPLAVE----LS 158
Query: 117 SILSCLNVIFFIRCGRGGHWSKECP 141
+ N + CG GH++ ECP
Sbjct: 159 KVQQSTNKVPCASCGAHGHFAGECP 183
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNG 99
++ K+FVGNL T ++ LF P+G VV ++R + FVH+ + I++LNG
Sbjct: 3 DSSAVKLFVGNLDLETTQDDLIALFAPFGEVVHITVLRQFAFVHLQGEGAADSAIRDLNG 62
Query: 100 MMVDGKPMKV 109
G+ + V
Sbjct: 63 REYRGRSLVV 72
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 11/64 (17%)
Query: 290 TVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN------- 342
++VV E++ P + + K+F+GN+ SVE + LF YGKV++CD VK
Sbjct: 69 SLVVEESKGRP----LNSTKVFVGNLCASCSVEDLYDLFSPYGKVLDCDKVKTKPSSLTG 124
Query: 343 YGFV 346
Y FV
Sbjct: 125 YAFV 128
>gi|296218879|ref|XP_002755663.1| PREDICTED: RNA-binding protein 4B [Callithrix jacchus]
Length = 372
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 18/152 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLN 123
F YG V+ECDIV++Y FVH++ + D + I+ L+ G+ + + + + ++ +C
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGELLWGLGSRAVWAMNTCGK 157
Query: 124 VIFF--------------IRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 EVKSRLRTAPGMGDQSGCYRCGKEGHWSKECP 189
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|156349371|ref|XP_001622030.1| hypothetical protein NEMVEDRAFT_v1g248588 [Nematostella vectensis]
gi|156208427|gb|EDO29930.1| predicted protein [Nematostella vectensis]
Length = 278
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
Query: 26 EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH- 84
E + +A + G + +K++VGNL D+ + +++ELF YGTV +CD V+N+ FVH
Sbjct: 33 EHSSESQAEATSSGSHQEESKLYVGNLPDDCQKHQLQELFAKYGTVSQCDRVKNFAFVHM 92
Query: 85 IDSPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECPRAG 144
+ + + IK L+ + G ++V A S + F CG+ GHW+++CP+
Sbjct: 93 VGRENADNAIKALDDSLFMGTHIQVQHA--KSKGKPAEDECFH--CGKCGHWARDCPKRS 148
Query: 145 NFR 147
+++
Sbjct: 149 SYQ 151
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+++GN+ ++ LF KYG V +CD VKN+ FV
Sbjct: 53 KLYVGNLPDDCQKHQLQELFAKYGTVSQCDRVKNFAFV 90
>gi|222824844|emb|CAM12246.2| RNA binding protein 4 [Danio rerio]
Length = 99
Score = 74.3 bits (181), Expect = 7e-11, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+FVGNLS NT A E+R LF YG + ECDIV+N+GFVH+DS + ++ I+ L+ M++G
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62
Query: 105 KPMKV 109
M V
Sbjct: 63 MAMNV 67
Score = 61.6 bits (148), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/38 (63%), Positives = 32/38 (84%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GN++P T+ E IR LF +YGK+ ECD+VKN+GFV
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFV 40
>gi|260790117|ref|XP_002590090.1| hypothetical protein BRAFLDRAFT_83361 [Branchiostoma floridae]
gi|229275278|gb|EEN46101.1| hypothetical protein BRAFLDRAFT_83361 [Branchiostoma floridae]
Length = 326
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 14/106 (13%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNG--- 99
TTK++VGN+ R ++++LF +G V ECDI++NYGFVH+D+ D N IK L
Sbjct: 20 TTKLYVGNVPQPARKKDLQDLFEKFGKVNECDIIKNYGFVHMDNEQDANDAIKALTNTEW 79
Query: 100 ----MMVDGKPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECP 141
+ V+ KV S C RCG+ GHWS++CP
Sbjct: 80 MGTRITVEMSKSKVRTQPGQGSRGECY------RCGKMGHWSRDCP 119
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 296 ARNMPGFSSVG---TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
R PG +S T K+++GNV + ++ LFEK+GKV ECD++KNYGFV
Sbjct: 6 GRPFPGRNSSKGEMTTKLYVGNVPQPARKKDLQDLFEKFGKVNECDIIKNYGFV 59
>gi|301616205|ref|XP_002937556.1| PREDICTED: hypothetical protein LOC100490607 [Xenopus (Silurana)
tropicalis]
Length = 324
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HME +++ AI EL+ Q L +E ATS+ TK++VGN+S +V+EL
Sbjct: 41 HMEREQDAHRAISELHKQEFYGSHLTVEYATSKI---RNATKIYVGNVSSRATTSQVKEL 97
Query: 65 FVPYGTVVECDIVRNYGFVHI 85
F +G VVECDIV+NY FVH+
Sbjct: 98 FEKFGKVVECDIVKNYAFVHM 118
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KI++GNV+ + ++ LFEK+GKVVECD+VKNY FV
Sbjct: 79 KIYVGNVSSRATTSQVKELFEKFGKVVECDIVKNYAFV 116
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
K+FVG +S + E+++LF YG V ECDI++NY FVH++ D ++ I EL+ G
Sbjct: 3 KIFVGGVSPSASPDELKKLFERYGQVNECDILKNYAFVHMEREQDAHRAISELHKQEFYG 62
Query: 105 KPMKVVVA 112
+ V A
Sbjct: 63 SHLTVEYA 70
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+G V+P S + ++ LFE+YG+V ECD++KNY FV
Sbjct: 3 KIFVGGVSPSASPDELKKLFERYGQVNECDILKNYAFV 40
>gi|392921057|ref|NP_001256408.1| Protein RNP-1, isoform a [Caenorhabditis elegans]
gi|20455220|sp|Q10667.1|RNP1_CAEEL RecName: Full=RNA-binding protein rnp-1
gi|733066|gb|AAA92287.1| RNP-1 [Caenorhabditis elegans]
gi|3881837|emb|CAB01455.1| Protein RNP-1, isoform a [Caenorhabditis elegans]
Length = 305
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDG 104
+K+FVGNL DN + +++++F P+ V ECDIV+NY FVHI+ D++ I L G +DG
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIEEDDVDPIITRLTGYTIDG 62
Query: 105 KPMKVVVA-GFISSILSCLNVIFFIRCGRGGHWSKECPR 142
K + + + + N F RC H + +CP+
Sbjct: 63 KVVNIKKSTSKLRPTPGMPNRCF--RCQSDEHRTPQCPQ 99
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+GN+ ++ +F+ + KV ECD+VKNY FV
Sbjct: 4 KLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFV 41
>gi|351706306|gb|EHB09225.1| RNA-binding protein 4B [Heterocephalus glaber]
Length = 333
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 9/141 (6%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ + + +EA+ K + +TK+ VGN+S +R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLYGVNINVEAS---KNKSKASTKLHVGNISPTVTNQGLRGK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLN 123
F YG V++CDIV++Y FVH++ + D + I+ L+ G+ +V V ISS+ +
Sbjct: 98 FAEYGPVIKCDIVKDYAFVHMEQAEDEVEAIRGLDDTEFQGQ--RVYVQLSISSLWTAPG 155
Query: 124 V---IFFIRCGRGGHWSKECP 141
+ RCG+ GHWS+ECP
Sbjct: 156 MGEQSGCYRCGKEGHWSEECP 176
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+ LF YG V+E I++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPWEASEQEICSLFEQYGKVLESGIIKNYGFVHIEDKTAAEDAIRNLHHYKLYG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 284 RYQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
Y+ +G + +EA +S K+ +GN++P + + +R F +YG V++CD+VK+Y
Sbjct: 57 HYKLYGVNINVEASKNKSKAST---KLHVGNISPTVTNQGLRGKFAEYGPVIKCDIVKDY 113
Query: 344 GFV 346
FV
Sbjct: 114 AFV 116
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ S + I LFE+YGKV+E ++KNYGFV
Sbjct: 3 KLFIGNLPWEASEQEICSLFEQYGKVLESGIIKNYGFV 40
>gi|341882941|gb|EGT38876.1| hypothetical protein CAEBREN_01889 [Caenorhabditis brenneri]
Length = 302
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDG 104
+K+FVGNL DN + +++++F P+ V ECDIV+NY FVHI+ D++ I L G ++G
Sbjct: 3 SKLFVGNLPDNVDSNKLKQIFQPFCKVTECDIVKNYAFVHIEEDDVDSIITRLTGYTIEG 62
Query: 105 KPMKVVVA-GFISSILSCLNVIFFIRCGRGGHWSKECPR 142
K + + + + N F RC H + +CP+
Sbjct: 63 KVVNIKKSTSKLRPTPGMPNRCF--RCQSDEHRTPQCPQ 99
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+GN+ ++ +F+ + KV ECD+VKNY FV
Sbjct: 4 KLFVGNLPDNVDSNKLKQIFQPFCKVTECDIVKNYAFV 41
>gi|341904482|gb|EGT60315.1| hypothetical protein CAEBREN_31415 [Caenorhabditis brenneri]
Length = 302
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDG 104
+K+FVGNL DN + +++++F P+ V ECDIV+NY FVHI+ D++ I L G ++G
Sbjct: 3 SKLFVGNLPDNVDSNKLKQIFQPFCKVTECDIVKNYAFVHIEEDDVDSIITRLTGYTIEG 62
Query: 105 KPMKVVVA-GFISSILSCLNVIFFIRCGRGGHWSKECPR 142
K + + + + N F RC H + +CP+
Sbjct: 63 KVVNIKKSTSKLRPTPGMPNRCF--RCQSDEHRTPQCPQ 99
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+GN+ ++ +F+ + KV ECD+VKNY FV
Sbjct: 4 KLFVGNLPDNVDSNKLKQIFQPFCKVTECDIVKNYAFV 41
>gi|325302660|tpg|DAA34468.1| TPA_exp: RNA-binding protein LARK [Amblyomma variegatum]
Length = 212
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 55/111 (49%), Gaps = 16/111 (14%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDGK 105
K++VG+L + A + LF YG V ECDIV+NY FVH+ S D +K M +D
Sbjct: 2 KLYVGSLPEGCDAASLEALFAKYGKVEECDIVKNYAFVHMSSEDESK-------MAIDAL 54
Query: 106 PMKVVVAGFISSILSCLNVI---------FFIRCGRGGHWSKECPRAGNFR 147
+ G I+ S V RCGR GHWSKECPR N R
Sbjct: 55 HNSEFMGGKITVEASHSKVRPKPGMGGRGQCYRCGRQGHWSKECPRNPNAR 105
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+++G++ G + LF KYGKV ECD+VKNY FV
Sbjct: 2 KLYVGSLPEGCDAASLEALFAKYGKVEECDIVKNYAFV 39
>gi|308504357|ref|XP_003114362.1| CRE-RNP-1 protein [Caenorhabditis remanei]
gi|308261747|gb|EFP05700.1| CRE-RNP-1 protein [Caenorhabditis remanei]
Length = 304
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDG 104
+K+FVGNL DN + +++++F P+ V ECDIV+NY FVHI+ D++ I L G ++G
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIEEDDVDSIITRLTGYSIEG 62
Query: 105 KPMKVVVA-GFISSILSCLNVIFFIRCGRGGHWSKECPR 142
K + + + + N F RC H + +CP+
Sbjct: 63 KVVNIKKSTSKLRPTPGMPNRCF--RCQSDDHRTPQCPQ 99
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+GN+ ++ +F+ + KV ECD+VKNY FV
Sbjct: 4 KLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFV 41
>gi|427796859|gb|JAA63881.1| Putative glycine rich protein, partial [Rhipicephalus pulchellus]
Length = 266
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 56/110 (50%), Gaps = 14/110 (12%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNG----- 99
K++VG+L + + LF YG V ECDIV+NY FVH++S + +K I L+
Sbjct: 33 KLYVGSLPEGCDVASLEALFAKYGKVEECDIVKNYAFVHMNSEEESKLAIDALHNSEFMG 92
Query: 100 --MMVDGKPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFR 147
+ V+ KV + C RCGR GHWSKECPR N R
Sbjct: 93 GKITVEASHSKVRPKPGMGGRGQCY------RCGRQGHWSKECPRNPNAR 136
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+++G++ G V + LF KYGKV ECD+VKNY FV
Sbjct: 33 KLYVGSLPEGCDVASLEALFAKYGKVEECDIVKNYAFV 70
>gi|268557402|ref|XP_002636690.1| C. briggsae CBR-RNP-1 protein [Caenorhabditis briggsae]
Length = 297
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 43/61 (70%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDG 104
+K+FVGNL DN + +++++F P+ V ECDIV+NY FVHI+ D++ I L G ++G
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIEEDDVDSIITRLTGYTIEG 62
Query: 105 K 105
K
Sbjct: 63 K 63
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+GN+ ++ +F+ + KV ECD+VKNY FV
Sbjct: 4 KLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFV 41
>gi|442755589|gb|JAA69954.1| Putative grp-3 498 glycine rich family [Ixodes ricinus]
Length = 239
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMVD 103
TK++VG+L + + +F YG V ECDIV+NY FVH+ + D K I L+
Sbjct: 2 TKLYVGSLPEGCDNASLEAIFAKYGKVDECDIVKNYAFVHMANEDEAKLAIDALHNSEFM 61
Query: 104 GKPMKVVVAGFISSILSCLNVIFF---IRCGRGGHWSKECPRAGNFR 147
G K+ V S + + RCGR GHWSKECPR N R
Sbjct: 62 GS--KITVEASHSKVRPKPGMGGRGQCYRCGRQGHWSKECPRNPNAR 106
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+++G++ G + +F KYGKV ECD+VKNY FV
Sbjct: 3 KLYVGSLPEGCDNASLEAIFAKYGKVDECDIVKNYAFV 40
>gi|427796855|gb|JAA63879.1| Putative glycine rich protein, partial [Rhipicephalus pulchellus]
Length = 249
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 56/110 (50%), Gaps = 14/110 (12%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNG----- 99
K++VG+L + + LF YG V ECDIV+NY FVH++S + +K I L+
Sbjct: 33 KLYVGSLPEGCDVASLEALFAKYGKVEECDIVKNYAFVHMNSEEESKLAIDALHNSEFMG 92
Query: 100 --MMVDGKPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFR 147
+ V+ KV + C RCGR GHWSKECPR N R
Sbjct: 93 GKITVEASHSKVRPKPGMGGRGQCY------RCGRQGHWSKECPRNPNAR 136
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+++G++ G V + LF KYGKV ECD+VKNY FV
Sbjct: 33 KLYVGSLPEGCDVASLEALFAKYGKVEECDIVKNYAFV 70
>gi|198419269|ref|XP_002128579.1| PREDICTED: similar to RNA binding motif protein 4B [Ciona
intestinalis]
Length = 336
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM + + + AI L+ + + +E +T++ +K+FVGNL T++ ++ +L
Sbjct: 41 HMADLNDAKKAIAGLDKTDLKGNSINVELSTTKV---QKASKIFVGNLPPETKSADIHKL 97
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVA 112
F YGTV+ECD+V+NY FVH+ ++ + I LN +G + V +A
Sbjct: 98 FKKYGTVIECDVVKNYAFVHMGRENMARDAINGLNNTEFNGNKIGVQMA 146
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+FVG L ++ + E+ ELF YG + +C I++NYGFVH+ D D K I L+ + G
Sbjct: 3 KIFVGRLPEDVKKSELEELFKAYGEITDCSILKNYGFVHMADLNDAKKAIAGLDKTDLKG 62
Query: 105 KPMKVVVA 112
+ V ++
Sbjct: 63 NSINVELS 70
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 28/38 (73%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GN+ P T I LF+KYG V+ECDVVKNY FV
Sbjct: 79 KIFVGNLPPETKSADIHKLFKKYGTVIECDVVKNYAFV 116
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+G + + LF+ YG++ +C ++KNYGFV
Sbjct: 3 KIFVGRLPEDVKKSELEELFKAYGEITDCSILKNYGFV 40
>gi|427777187|gb|JAA54045.1| Putative glycine rich protein [Rhipicephalus pulchellus]
Length = 219
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKEL-NGMMVD 103
K++VG+L + + LF YG V ECDIV+NY FVH++S + +K I L N +
Sbjct: 3 KLYVGSLPEGCDVASLEALFAKYGKVEECDIVKNYAFVHMNSEEESKLAIDALHNSEFMG 62
Query: 104 GKPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFR 147
GK + RCGR GHWSKECPR N R
Sbjct: 63 GKITVEASHSKVRPKPGMGGRGQCYRCGRQGHWSKECPRNPNAR 106
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+++G++ G V + LF KYGKV ECD+VKNY FV
Sbjct: 3 KLYVGSLPEGCDVASLEALFAKYGKVEECDIVKNYAFV 40
>gi|74139976|dbj|BAE31823.1| unnamed protein product [Mus musculus]
Length = 636
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|291385475|ref|XP_002709279.1| PREDICTED: RNA binding motif protein 14 [Oryctolagus cuniculus]
Length = 667
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|62897219|dbj|BAD96550.1| RNA binding motif protein 14 variant [Homo sapiens]
Length = 669
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|119594959|gb|EAW74553.1| RNA binding motif protein 14, isoform CRA_b [Homo sapiens]
Length = 618
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|350539351|ref|NP_001233311.1| RNA-binding protein 14 [Pan troglodytes]
gi|397517055|ref|XP_003828735.1| PREDICTED: RNA-binding protein 14 isoform 1 [Pan paniscus]
gi|343958970|dbj|BAK63340.1| RNA-binding protein 14 [Pan troglodytes]
gi|410222928|gb|JAA08683.1| RNA binding motif protein 14 [Pan troglodytes]
gi|410256128|gb|JAA16031.1| RNA binding motif protein 14 [Pan troglodytes]
gi|410293820|gb|JAA25510.1| RNA binding motif protein 14 [Pan troglodytes]
gi|410339483|gb|JAA38688.1| RNA binding motif protein 14 [Pan troglodytes]
Length = 669
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|86262142|ref|NP_063922.2| RNA-binding protein 14 [Mus musculus]
gi|73621447|sp|Q8C2Q3.1|RBM14_MOUSE RecName: Full=RNA-binding protein 14; AltName: Full=RNA-binding
motif protein 14
gi|26353152|dbj|BAC40206.1| unnamed protein product [Mus musculus]
gi|74195530|dbj|BAE39579.1| unnamed protein product [Mus musculus]
gi|148701118|gb|EDL33065.1| mCG8382, isoform CRA_e [Mus musculus]
Length = 669
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|15022507|gb|AAK77961.1|AF315632_1 coactivator activator [Homo sapiens]
Length = 669
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|5454064|ref|NP_006319.1| RNA-binding protein 14 isoform 1 [Homo sapiens]
gi|402892710|ref|XP_003909552.1| PREDICTED: RNA-binding protein 14 [Papio anubis]
gi|426369329|ref|XP_004051645.1| PREDICTED: RNA-binding protein 14 isoform 1 [Gorilla gorilla
gorilla]
gi|73913750|sp|Q96PK6.2|RBM14_HUMAN RecName: Full=RNA-binding protein 14; AltName: Full=Paraspeckle
protein 2; Short=PSP2; AltName: Full=RNA-binding motif
protein 14; AltName: Full=RRM-containing coactivator
activator/modulator; AltName:
Full=Synaptotagmin-interacting protein;
Short=SYT-interacting protein
gi|3746787|gb|AAC64058.1| SYT interacting protein SIP [Homo sapiens]
gi|12653435|gb|AAH00488.1| RBM14 protein [Homo sapiens]
gi|119594958|gb|EAW74552.1| RNA binding motif protein 14, isoform CRA_a [Homo sapiens]
gi|167773197|gb|ABZ92033.1| RNA binding motif protein 14 [synthetic construct]
gi|193785611|dbj|BAG51046.1| unnamed protein product [Homo sapiens]
gi|355566267|gb|EHH22646.1| RNA-binding motif protein 14 [Macaca mulatta]
gi|380783623|gb|AFE63687.1| RNA-binding protein 14 isoform 1 [Macaca mulatta]
gi|384944744|gb|AFI35977.1| RNA-binding protein 14 isoform 1 [Macaca mulatta]
Length = 669
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|198417315|ref|XP_002119186.1| PREDICTED: similar to RNA binding motif protein 4B [Ciona
intestinalis]
Length = 157
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM + + + AI L+ + + +E +T++ +K+FVGNL T++ ++ +L
Sbjct: 41 HMADLNDAKKAIAGLDKTDLKGNSINVELSTTKV---QKASKIFVGNLPPETKSADIHKL 97
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVA 112
F YGTV+ECD+V+NY FVH+ ++ + I LN +G + V +A
Sbjct: 98 FKKYGTVIECDVVKNYAFVHMGRENMARDAINGLNNTEFNGNKIGVQMA 146
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+FVG L ++ + E+ ELF YG + +C I++NYGFVH+ D D K I L+ + G
Sbjct: 3 KIFVGRLPEDVKKSELEELFKAYGEITDCSILKNYGFVHMADLNDAKKAIAGLDKTDLKG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 NSINV 67
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 28/38 (73%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GN+ P T I LF+KYG V+ECDVVKNY FV
Sbjct: 79 KIFVGNLPPETKSADIHKLFKKYGTVIECDVVKNYAFV 116
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+G + + LF+ YG++ +C ++KNYGFV
Sbjct: 3 KIFVGRLPEDVKKSELEELFKAYGEITDCSILKNYGFV 40
>gi|197099062|ref|NP_001125363.1| RNA-binding protein 14 [Pongo abelii]
gi|73621448|sp|Q5RC41.1|RBM14_PONAB RecName: Full=RNA-binding protein 14; AltName: Full=RNA-binding
motif protein 14
gi|55727832|emb|CAH90669.1| hypothetical protein [Pongo abelii]
Length = 669
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|403301165|ref|XP_003941269.1| PREDICTED: RNA-binding protein 14 [Saimiri boliviensis boliviensis]
Length = 669
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|383415143|gb|AFH30785.1| RNA-binding protein 14 isoform 1 [Macaca mulatta]
Length = 669
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|345783055|ref|XP_852283.2| PREDICTED: RNA-binding protein 14 isoform 1 [Canis lupus
familiaris]
Length = 669
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|16307494|gb|AAH10294.1| Rbm14 protein [Mus musculus]
Length = 618
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|395851689|ref|XP_003798385.1| PREDICTED: RNA-binding protein 14 [Otolemur garnettii]
Length = 669
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|346716308|ref|NP_001231150.1| RNA-binding protein 14 [Sus scrofa]
Length = 669
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|348565065|ref|XP_003468324.1| PREDICTED: RNA-binding protein 14-like [Cavia porcellus]
Length = 669
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|431910218|gb|ELK13291.1| RNA-binding protein 14 [Pteropus alecto]
Length = 664
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|354496138|ref|XP_003510184.1| PREDICTED: RNA-binding protein 14 [Cricetulus griseus]
Length = 669
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|404501516|ref|NP_596879.1| RNA-binding protein 14 [Rattus norvegicus]
gi|392338034|ref|XP_003753424.1| PREDICTED: RNA-binding protein 14-like [Rattus norvegicus]
gi|392344818|ref|XP_003749082.1| PREDICTED: RNA-binding protein 14-like [Rattus norvegicus]
gi|149061997|gb|EDM12420.1| rCG48334, isoform CRA_e [Rattus norvegicus]
Length = 669
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|148701115|gb|EDL33062.1| mCG8382, isoform CRA_c [Mus musculus]
Length = 614
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|301784863|ref|XP_002927842.1| PREDICTED: RNA-binding protein 14-like [Ailuropoda melanoleuca]
gi|281346285|gb|EFB21869.1| hypothetical protein PANDA_017685 [Ailuropoda melanoleuca]
Length = 669
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|296218875|ref|XP_002807420.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 14 [Callithrix
jacchus]
Length = 669
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|349802575|gb|AEQ16760.1| putative rna binding motif protein 4b [Pipa carvalhoi]
Length = 100
Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 30/128 (23%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 74
A+ LN ++ P+ +E SR P +TK+ V NLS + E+R F YG+V+EC
Sbjct: 2 AVHNLNHYKLHGVPINVE--NSRGKPKA-STKLHVSNLSSECTSEELRAKFEEYGSVLEC 58
Query: 75 DIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFIRCGRG 133
DIV++Y FVH++ D + I+ L+ C RCG
Sbjct: 59 DIVKDYAFVHMEKSDEALEAIRNLDNT-------------------ECY------RCGE- 92
Query: 134 GHWSKECP 141
GHWSKECP
Sbjct: 93 GHWSKECP 100
Score = 44.7 bits (104), Expect = 0.066, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 285 YQSFGTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
Y+ G + +E +R P S+ K+ + N++ + E +R FE+YG V+ECD+VK+Y
Sbjct: 9 YKLHGVPINVENSRGKPKAST----KLHVSNLSSECTSEELRAKFEEYGSVLECDIVKDY 64
Query: 344 GFV 346
FV
Sbjct: 65 AFV 67
>gi|440899388|gb|ELR50691.1| RNA-binding protein 14 [Bos grunniens mutus]
Length = 669
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRR 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRRLFERRGRVIECDVVKDYAFV 117
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|62460492|ref|NP_001014901.1| RNA-binding protein 14 [Bos taurus]
gi|73621446|sp|Q5EA36.1|RBM14_BOVIN RecName: Full=RNA-binding protein 14; AltName: Full=RNA-binding
motif protein 14
gi|59857831|gb|AAX08750.1| RNA binding motif protein 14 [Bos taurus]
Length = 669
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|296471614|tpg|DAA13729.1| TPA: RNA-binding protein 14 [Bos taurus]
Length = 669
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|149061998|gb|EDM12421.1| rCG48334, isoform CRA_f [Rattus norvegicus]
Length = 614
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|417403347|gb|JAA48481.1| Putative rna-binding protein lark [Desmodus rotundus]
Length = 616
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|391327753|ref|XP_003738361.1| PREDICTED: uncharacterized protein LOC100897325 [Metaseiulus
occidentalis]
Length = 254
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
TK+FVG+L + T +VR LF +G V ECD++++YGFVH+ + D I LNG
Sbjct: 4 TKIFVGSLPEGTSTDDVRALFEAHGEVQECDVIKDYGFVHMANDADAQAAIAALNGHEFR 63
Query: 104 GKPMKVVVA-GFISSILSCLNVIFFIRCGRGGHWSKEC 140
G + V + + + RCG+ GHWSKEC
Sbjct: 64 GVAINVEQSRSRVRQKPGMGGKMTCFRCGKQGHWSKEC 101
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+G++ GTS + +R LFE +G+V ECDV+K+YGFV
Sbjct: 5 KIFVGSLPEGTSTDDVRALFEAHGEVQECDVIKDYGFV 42
>gi|348525823|ref|XP_003450421.1| PREDICTED: RNA-binding protein 4B-like [Oreochromis niloticus]
Length = 347
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNLS NT E+ LF YGTV EC +NY FVH+ D K I+EL+ ++G
Sbjct: 3 KIFIGNLSQNTEKDEIEALFTQYGTVTECAKYKNYAFVHMEDRKSATKAIRELHLHKLNG 62
Query: 105 KPMKV 109
+P+ V
Sbjct: 63 RPINV 67
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 63/110 (57%), Gaps = 7/110 (6%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR-KGPNTPTTKVFVGNLSDNTRAPEVRE 63
HME+ + AI+EL+ +N +P+ +E + S +GP K+ V N+ E+R+
Sbjct: 41 HMEDRKSATKAIRELHLHKLNGRPINVEPSRSTDQGP----VKLHVANVEKGFDK-ELRD 95
Query: 64 LFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVVVA 112
LF+ YGTV EC IV+N+ FVH+ +S + ++ L+ GK + V ++
Sbjct: 96 LFLEYGTVTECSIVKNFAFVHMSNSDEAMDALQGLDNTEFQGKRIHVQIS 145
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIFIGN++ T + I LF +YG V EC KNY FV
Sbjct: 3 KIFIGNLSQNTEKDEIEALFTQYGTVTECAKYKNYAFV 40
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G K+ + NV G EL R LF +YG V EC +VKN+ FV
Sbjct: 76 GPVKLHVANVEKGFDKEL-RDLFLEYGTVTECSIVKNFAFV 115
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKV 47
+ EN + A++ELNG+I N+K L K E T +
Sbjct: 260 NFENADAAAQAVQELNGKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNL 319
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
++ NL +N ++RELF YG + C ++R+ GFV S D N+ + E+NG
Sbjct: 320 YLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNG 379
Query: 100 MMVDGKPMKVVVA 112
MV KP+ V +A
Sbjct: 380 KMVGSKPLYVALA 392
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 13/118 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 59
E DE ++AI +LNG ++N+K P + N + V+V NLSD
Sbjct: 169 QFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDD 228
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E++E+F YGT+ ++R+ +GFV+ ++ D + ++ELNG + + K + V
Sbjct: 229 ELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYV 286
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
N + A++ LN +N KP++I + +SRK + T +F+ NL + + +
Sbjct: 85 NQGDAARALELLNFTPINGKPIRIMYSNRDPSSRK---SGTGNIFIKNLDKSIDNKALYD 141
Query: 64 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
F +G ++ C I R YGFV + + I +LNGM+++ K KV V F+
Sbjct: 142 TFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDK--KVFVGPFV 199
>gi|395544486|ref|XP_003774141.1| PREDICTED: RNA-binding protein 4-like [Sarcophilus harrisii]
Length = 393
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMV 102
T + GN+S E+R F YG V+ECDIV++ FVH++ + D + I+ L+
Sbjct: 107 THALXXGNISPTCTNLELRAKFEEYGPVIECDIVKDSAFVHMERAEDAVEAIRGLDNTEF 166
Query: 103 DGKPMKVVVA-GFISSILSCLNVIFFIRCGRGGHWSKECP 141
GK M V ++ + + + RCG+ GHWSKECP
Sbjct: 167 QGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP 206
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T + GN++P + +R FE+YG V+ECD+VK+ FV
Sbjct: 107 THALXXGNISPTCTNLELRAKFEEYGPVIECDIVKDSAFV 146
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKV 47
+ EN + A++ELNG+I N+K L K E T +
Sbjct: 260 NFENADAAAQAVQELNGKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNL 319
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
++ NL +N ++RELF YG + C ++R+ GFV S D N+ + E+NG
Sbjct: 320 YLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNG 379
Query: 100 MMVDGKPMKVVVA 112
MV KP+ V +A
Sbjct: 380 KMVGSKPLYVALA 392
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 13/118 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 59
E DE ++AI +LNG ++N+K P + N + V+V NLSD
Sbjct: 169 QFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDD 228
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E++E+F YGT+ ++R+ +GFV+ ++ D + ++ELNG + + K + V
Sbjct: 229 ELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYV 286
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
N + A++ LN +N KP++I + +SRK + T +F+ NL + + +
Sbjct: 85 NQGDAARALELLNFTPINGKPIRIMYSNRDPSSRK---SGTGNIFIKNLDKSIDNKALYD 141
Query: 64 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
F +G ++ C I R YGFV + + I +LNGM+++ K KV V F+
Sbjct: 142 TFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDK--KVFVGPFV 199
>gi|351710883|gb|EHB13802.1| RNA-binding protein 14 [Heterocephalus glaber]
Length = 669
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVG++S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRPMN-TWKIFVGDVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+G+V+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----MNTWKIFVGDVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|325303454|tpg|DAA34558.1| TPA_exp: RNA-binding protein LARK [Amblyomma variegatum]
Length = 217
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGM 100
+P TK+FVG+L D R E++ELF YGTV ECD++ YGFVH+ + + + +K LN
Sbjct: 2 SPRTKLFVGHLPDGLRTEELQELFAKYGTVTECDVINKYGFVHMATEEQAEEALKNLNNY 61
Query: 101 MVDGKPMKV 109
G + V
Sbjct: 62 NFMGSTLSV 70
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+G++ G E ++ LF KYG V ECDV+ YGFV
Sbjct: 6 KLFVGHLPDGLRTEELQELFAKYGTVTECDVINKYGFV 43
>gi|410906739|ref|XP_003966849.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 343
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNLS T EV LFV YGTV EC +NY FVH+ D K I+EL+ ++G
Sbjct: 3 KIFIGNLSPETEKDEVEALFVQYGTVTECAKYKNYAFVHMEDRKSATKAIRELHLHKLNG 62
Query: 105 KPMKVVVA 112
+P+ V ++
Sbjct: 63 RPINVELS 70
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HME+ + AI+EL+ +N +P+ +E + KG P K+ + N+ E+REL
Sbjct: 41 HMEDRKSATKAIRELHLHKLNGRPINVELSRG-KGHQGPV-KIHIANVEKGF-DKELREL 97
Query: 65 FVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVVVA 112
F YGTV EC IV+N+ FVH+ +S + I+ L+ GK + V ++
Sbjct: 98 FEEYGTVSECAIVKNFAFVHMPNSEEAMDAIQGLDNSEFQGKRIHVQIS 146
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIFIGN++P T + + LF +YG V EC KNY FV
Sbjct: 3 KIFIGNLSPETEKDEVEALFVQYGTVTECAKYKNYAFV 40
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 301 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G G KI I NV G EL R LFE+YG V EC +VKN+ FV
Sbjct: 72 GKGHQGPVKIHIANVEKGFDKEL-RELFEEYGTVSECAIVKNFAFV 116
>gi|241856245|ref|XP_002416055.1| RNA binding motif-containing protein, putative [Ixodes scapularis]
gi|215510269|gb|EEC19722.1| RNA binding motif-containing protein, putative [Ixodes scapularis]
Length = 195
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMM 101
P TK+FVG+L D R E++ELF YGTV ECD++ YGFVH+ + + + +K LN
Sbjct: 3 PRTKLFVGHLPDGLRTEELQELFAKYGTVTECDVINKYGFVHMSTEEECEEALKNLNNYN 62
Query: 102 VDGKPMKV 109
G + V
Sbjct: 63 FMGSTLSV 70
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+G++ G E ++ LF KYG V ECDV+ YGFV
Sbjct: 6 KLFVGHLPDGLRTEELQELFAKYGTVTECDVINKYGFV 43
>gi|12836486|dbj|BAB23678.1| unnamed protein product [Mus musculus]
Length = 669
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ K I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEAYAKAAIAQLNGKGVKGKRINV 144
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|53547|emb|CAA36322.1| 16 kDA protein [Mus musculus]
Length = 573
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMV 102
T K+FVGN+S + E+R LF G V+ECD+V++Y FVH++ D I +LNG V
Sbjct: 77 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGQEV 136
Query: 103 DGKPMKV 109
GK + V
Sbjct: 137 KGKRINV 143
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 62 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 116
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI 85
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHM 42
>gi|311771525|ref|NP_001185765.1| RNA-binding protein 14 isoform 2 [Homo sapiens]
gi|345783057|ref|XP_003432362.1| PREDICTED: RNA-binding protein 14 [Canis lupus familiaris]
gi|397517057|ref|XP_003828736.1| PREDICTED: RNA-binding protein 14 isoform 2 [Pan paniscus]
gi|426369331|ref|XP_004051646.1| PREDICTED: RNA-binding protein 14 isoform 2 [Gorilla gorilla
gorilla]
gi|15022509|gb|AAK77962.1|AF315633_1 coactivator modulator [Homo sapiens]
Length = 156
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNGQIVNE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G + + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRP-LNTWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 33/42 (78%)
Query: 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNG 99
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHG 57
>gi|444510190|gb|ELV09525.1| RNA-binding protein 14 [Tupaia chinensis]
Length = 669
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELHS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + + LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELHSLFERRGRVIECDVVKDYAFV 117
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
>gi|332249851|ref|XP_003274067.1| PREDICTED: RNA-binding protein 14, partial [Nomascus leucogenys]
Length = 617
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMV 102
T K+FVGN+S + E+R LF G V+ECD+V++Y FVH++ D I +LNG V
Sbjct: 27 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV 86
Query: 103 DGKPMKV 109
GK + V
Sbjct: 87 KGKRINV 93
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 12 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 66
>gi|87578307|gb|AAI13268.1| RBM14 protein [Bos taurus]
Length = 156
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNGQIVNE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G + + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVE--MSRPRP-LNTWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 33/42 (78%)
Query: 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNG 99
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHG 57
>gi|47210650|emb|CAF94318.1| unnamed protein product [Tetraodon nigroviridis]
Length = 184
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+F+GNLS T EV LFV YGTV EC +NY FVH+ D K I+EL+ ++
Sbjct: 2 VKIFIGNLSPETEKDEVEALFVQYGTVTECAKYKNYAFVHMEDRKSATKAIRELHLHKLN 61
Query: 104 GKPMKVVVA 112
G+P+ V ++
Sbjct: 62 GRPINVELS 70
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HME+ + AI+EL+ +N +P+ +E SR + K+ + N+ E+REL
Sbjct: 41 HMEDRKSATKAIRELHLHKLNGRPINVE--LSRGKGHMGPVKIHIANVEKGFEK-ELREL 97
Query: 65 FVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDGKPM 107
F YG V EC IV+N+ FVH+ +S + I+ L+ G+ +
Sbjct: 98 FEEYGIVSECSIVKNFAFVHMPNSEEAMDAIQGLDNSEFQGEDL 141
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 301 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +G KI I NV G EL R LFE+YG V EC +VKN+ FV
Sbjct: 72 GKGHMGPVKIHIANVEKGFEKEL-RELFEEYGIVSECSIVKNFAFV 116
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIFIGN++P T + + LF +YG V EC KNY FV
Sbjct: 3 KIFIGNLSPETEKDEVEALFVQYGTVTECAKYKNYAFV 40
>gi|334347620|ref|XP_001379260.2| PREDICTED: RNA-binding protein 14 [Monodelphis domestica]
Length = 636
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGK 105
+FVGN+S + E+R LF +G V+ECD+V++Y FVH++ D I++LNG V GK
Sbjct: 42 IFVGNVSAACTSQELRSLFERHGPVIECDVVKDYAFVHMEKEADAKAAIEQLNGKEVKGK 101
Query: 106 PMKV 109
+ V
Sbjct: 102 RINV 105
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 29/37 (78%)
Query: 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
IF+GNV+ + + +R LFE++G V+ECDVVK+Y FV
Sbjct: 42 IFVGNVSAACTSQELRSLFERHGPVIECDVVKDYAFV 78
>gi|197098970|ref|NP_001126757.1| RNA-binding protein 4 [Pongo abelii]
gi|55732548|emb|CAH92974.1| hypothetical protein [Pongo abelii]
Length = 170
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGH 135
+ RCG+ GH
Sbjct: 158 DQSGCYRCGKEGH 170
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKP---------------LKIEAATSRK--GPNTPTTKV 47
+ EN ++ A++ LNG+ ++K LK++ S K ++ +
Sbjct: 265 NFENADDAAKAVESLNGKTFDDKEWFVGRAQKKSEREMELKVQYEQSLKEAADKFQSSNL 324
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
+V NL D+ +++ELF PYGTV C ++R+ GFV +P + K + E++G
Sbjct: 325 YVKNLDDSVSDEKLKELFTPYGTVTSCKVMRDPNGMSRGSGFVAFSTPEEATKAMSEMSG 384
Query: 100 MMVDGKPMKVVVA 112
M++ KP+ V VA
Sbjct: 385 KMIENKPLYVAVA 397
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 13/112 (11%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAPEV 61
E +E + A+ +LNG ++N+K + + R+ G T T V+V NL+++T ++
Sbjct: 176 ETEESAQKAMGQLNGMLLNDKQVYVGPFLRRQERDSTGNKTIFTNVYVKNLAESTTDDDL 235
Query: 62 RELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 105
+ +F +G + ++++ +GFV+ + + D K ++ LNG D K
Sbjct: 236 KNIFGEFGKITSAVVMKDGEGKPKGFGFVNFENADDAAKAVESLNGKTFDDK 287
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 9/76 (11%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCI 94
TT ++VG+L N ++ + F G VV + R+ YG+V+ SP D + I
Sbjct: 39 TTSLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARAI 98
Query: 95 KELNGMMVDGKPMKVV 110
+ELN + ++GKP++V+
Sbjct: 99 QELNYIPLNGKPVRVM 114
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 15/117 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 66
++ AI+ELN +N KP+++ S + P+ + +F+ NL + + + F
Sbjct: 92 QDAARAIQELNYIPLNGKPVRV--MYSHRDPSVRRSGAGNIFIKNLDKSIDHKALHDTFS 149
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + + YGFV ++ + K + +LNGM+++ K +V V F+
Sbjct: 150 VFGNIISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDK--QVYVGPFL 204
>gi|28839776|gb|AAH47836.1| Zgc:56141 protein [Danio rerio]
gi|197247072|gb|AAI65109.1| Zgc:56141 protein [Danio rerio]
Length = 249
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ + AIK L+ ++ P+ +EA+ +G N K+ V N+ T E+R L
Sbjct: 113 HMDDRKSATKAIKNLHLYKLHGTPINVEAS---RGKNQGPVKLHVANVEKGT-DDELRAL 168
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
F YGTV EC I++N+ FVH+++ D IK L+ GK + V ++
Sbjct: 169 FEDYGTVAECAIIKNFAFVHMNNSDEAMDAIKGLDNTEFQGKRIHVQIS 217
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGK 105
+++GNL E++ LF YGTV EC I++N+ FVH+D K IK L+ + G
Sbjct: 76 LYIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSATKAIKNLHLYKLHGT 135
Query: 106 PMKV 109
P+ V
Sbjct: 136 PINV 139
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ GT + +EA + G K+ + NV GT EL R LFE YG V EC ++KN+
Sbjct: 130 YKLHGTPINVEASRG---KNQGPVKLHVANVEKGTDDEL-RALFEDYGTVAECAIIKNFA 185
Query: 345 FV 346
FV
Sbjct: 186 FV 187
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
++IGN+ V+ ++ LF +YG V EC ++KN+ FV
Sbjct: 76 LYIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFV 112
>gi|348519072|ref|XP_003447055.1| PREDICTED: hypothetical protein LOC100709068 [Oreochromis
niloticus]
Length = 603
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 66/120 (55%), Gaps = 14/120 (11%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 74
AI+ L+G+ +PL +E + +R PN+ TKVFVGNLS A ++ LF +G V++C
Sbjct: 113 AIRHLDGKEYRGRPLVVEESRARP-PNS--TKVFVGNLSATCSADDLHGLFSAFGRVLDC 169
Query: 75 DIVR-------NYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAG---FISSILSCLN 123
D V+ Y FVH++ + I+ LNG M G+ + V ++ I+ I++ N
Sbjct: 170 DKVKARLCSNVGYAFVHMERKEEALAAIEALNGTMFKGRQLAVELSKAQPLINQIMTAGN 229
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDG 104
K+FVGNL + E+ +LF PYG + C ++R Y FV + ++ I+ L+G G
Sbjct: 65 KLFVGNLPIDATHEELNKLFAPYGEINTCSLLRQYAFVTLKGEGAADRAIRHLDGKEYRG 124
Query: 105 KPMKV 109
+P+ V
Sbjct: 125 RPLVV 129
>gi|390359470|ref|XP_782936.3| PREDICTED: nucleolysin TIAR-like [Strongylocentrotus purpuratus]
Length = 430
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 12/117 (10%)
Query: 12 GRTAIKELNGQIVNEKPLKIEAATSR--KGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 69
A+ +NG+ V +KP+K+ AT++ + T VFVG+L + E+R LF YG
Sbjct: 79 AEAAMVAMNGRTVFDKPIKVNWATTQGSRKDTTHHHHVFVGDLVQEMKTAELRALFDKYG 138
Query: 70 TVVECDIVRN--------YGFVHIDSPDINKC-IKELNGMMVDGKP-MKVVVAGFIS 116
++ + +VR+ YGFV + + +C IKE+NG ++ P MK + G+ +
Sbjct: 139 SITDARVVRDPETGKSRCYGFVSFEQEEDAQCAIKEMNGAILPQYPGMKAIRTGWAT 195
>gi|47086959|ref|NP_998482.1| uncharacterized protein LOC406277 [Danio rerio]
gi|45595715|gb|AAH67153.1| Zgc:56141 [Danio rerio]
Length = 341
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ + AIK L+ ++ P+ +EA+ +G N K+ V N+ T E+R L
Sbjct: 41 HMDDRKSATKAIKNLHLYKLHGTPINVEAS---RGKNQGPVKLHVANVEKGTDD-ELRAL 96
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
F YGTV EC I++N+ FVH+++ D IK L+ GK + V ++
Sbjct: 97 FEDYGTVAECAIIKNFAFVHMNNSDEAMDAIKGLDNTEFQGKRIHVQIS 145
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+F+GNL E++ LF YGTV EC I++N+ FVH+D K IK L+ + G
Sbjct: 3 KIFIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSATKAIKNLHLYKLHG 62
Query: 105 KPMKV 109
P+ V
Sbjct: 63 TPINV 67
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ GT + +EA + G K+ + NV GT EL R LFE YG V EC ++KN+
Sbjct: 58 YKLHGTPINVEASRG---KNQGPVKLHVANVEKGTDDEL-RALFEDYGTVAECAIIKNFA 113
Query: 345 FV 346
FV
Sbjct: 114 FV 115
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIFIGN+ V+ ++ LF +YG V EC ++KN+ FV
Sbjct: 3 KIFIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFV 40
>gi|432896166|ref|XP_004076291.1| PREDICTED: uncharacterized protein LOC101157077 [Oryzias latipes]
Length = 515
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 11/106 (10%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 74
AI+ L+G+ +PL +E + +R PN+ TK+FVGNLS A ++ LF +G V++C
Sbjct: 55 AIRHLDGKEYRGRPLVVEESRARP-PNS--TKIFVGNLSATCSADDLHGLFSTFGRVLDC 111
Query: 75 DIVR-------NYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA 112
D V+ Y FVH++ + I LNG M G+ + V ++
Sbjct: 112 DKVKARLCSNVGYAFVHMERKEEAQAAIDALNGTMFKGRQLAVELS 157
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMVDG 104
K+FVGNL + E+ ++F PYG + C ++R Y FV + ++ I+ L+G G
Sbjct: 7 KLFVGNLPIDATHEEISKIFSPYGEINTCSLLRQYAFVTLKGEGAADRAIRHLDGKEYRG 66
Query: 105 KPMKV 109
+P+ V
Sbjct: 67 RPLVV 71
>gi|270009870|gb|EFA06318.1| hypothetical protein TcasGA2_TC009189 [Tribolium castaneum]
Length = 369
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDIN-KCIKELNGM 100
TTKVFVG+L + ++R LF PYG + ECDI GF+H++ D+ K I ELNG
Sbjct: 19 TTKVFVGSLPNGVTTDDLRSLFAPYGAIAECDIANRCGFLHLEDHDLAMKAIAELNGT 76
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T K+F+G++ G + + +R LF YG + ECD+ GF+
Sbjct: 19 TTKVFVGSLPNGVTTDDLRSLFAPYGAIAECDIANRCGFL 58
>gi|159164257|pdb|2DNP|A Chain A, Solution Structure Of Rna Binding Domain 2 In Rna-Binding
Protein 14
Length = 90
Score = 61.6 bits (148), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 39 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKEL 97
G + T K+FVGN+S + E+R LF G V+ECD+V++Y FVH++ D I +L
Sbjct: 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQL 63
Query: 98 NGMMVDGKPMKV 109
NG V GK + V
Sbjct: 64 NGKEVKGKRINV 75
Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 34/44 (77%)
Query: 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
SS T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 48
>gi|189238942|ref|XP_971700.2| PREDICTED: similar to GA20673-PA [Tribolium castaneum]
Length = 364
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDIN-KCIKELNGM 100
TTKVFVG+L + ++R LF PYG + ECDI GF+H++ D+ K I ELNG
Sbjct: 8 TTKVFVGSLPNGVTTDDLRSLFAPYGAIAECDIANRCGFLHLEDHDLAMKAIAELNGT 65
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T K+F+G++ G + + +R LF YG + ECD+ GF+
Sbjct: 8 TTKVFVGSLPNGVTTDDLRSLFAPYGAIAECDIANRCGFL 47
>gi|392344877|ref|XP_003749100.1| PREDICTED: RNA-binding protein 14-like [Rattus norvegicus]
Length = 404
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPM 107
F YG V+ECDIV++Y FVH++ + D + I+ L+ G+ +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGESL 141
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 284 RYQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
Y+ G + +EA S + K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 57 HYKLHGVNINVEASKNK---SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 344 GFV 346
FV
Sbjct: 114 AFV 116
>gi|348525775|ref|XP_003450397.1| PREDICTED: RNA-binding protein 4B-like [Oreochromis niloticus]
Length = 338
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ + AIK L+ ++ P+ +EA+ G N + K+ V N+ + E+R L
Sbjct: 41 HMDDRKAATKAIKNLHLYKLHGTPINVEAS---HGKNQGSVKLHVANVEKGS-DDELRAL 96
Query: 65 FVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVVVA 112
F YGTV EC +V+N+ FVH+ +S + IK L+ GK + V ++
Sbjct: 97 FEEYGTVTECAVVKNFAFVHMSNSDEAMDAIKGLDNTEFQGKRIHVQIS 145
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+FVGNL T E++ LF YGTV EC I++N+ FVH+D K IK L+ + G
Sbjct: 3 KIFVGNLPRATNEDEIKALFTEYGTVTECAIIKNFAFVHMDDRKAATKAIKNLHLYKLHG 62
Query: 105 KPMKV 109
P+ V
Sbjct: 63 TPINV 67
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ GT + +EA + + G+ K+ + NV G+ EL R LFE+YG V EC VVKN+
Sbjct: 58 YKLHGTPINVEASHG---KNQGSVKLHVANVEKGSDDEL-RALFEEYGTVTECAVVKNFA 113
Query: 345 FV 346
FV
Sbjct: 114 FV 115
Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GN+ T+ + I+ LF +YG V EC ++KN+ FV
Sbjct: 3 KIFVGNLPRATNEDEIKALFTEYGTVTECAIIKNFAFV 40
>gi|119594961|gb|EAW74555.1| RNA binding motif protein 4, isoform CRA_b [Homo sapiens]
Length = 315
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGK 105
F YG V+ECDIV++Y FVH++ + D + I+ L+ G+
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGE 139
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|119594960|gb|EAW74554.1| RNA binding motif protein 4, isoform CRA_a [Homo sapiens]
Length = 326
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 14 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 73
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 74 VNINVEASKNKSKTSTKLHV 93
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 52 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 108
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGK 105
F YG V+ECDIV++Y FVH++ + D + I+ L+ G+
Sbjct: 109 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGE 150
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 32/42 (76%)
Query: 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
V K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 10 VRMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 51
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 69 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 125
Query: 345 FV 346
FV
Sbjct: 126 FV 127
>gi|397517075|ref|XP_003828745.1| PREDICTED: RNA-binding protein 4 isoform 4 [Pan paniscus]
gi|18088917|gb|AAH21120.1| RBM4 protein [Homo sapiens]
gi|50949475|emb|CAH10593.1| hypothetical protein [Homo sapiens]
Length = 177
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKP 106
F YG V+ECDIV++Y FVH++ + D + I+ L+ G+P
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGEP 140
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 64/114 (56%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAP 59
E +E ++A+K LNG ++N+KP+ + ++ + + K VFV NLS++T
Sbjct: 256 QYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSSDKAKFNNVFVKNLSESTTKE 315
Query: 60 EVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGK 105
++ ++F YGT+ ++ R +GFV+ +SP D + ++ELNG ++ K
Sbjct: 316 DLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELNGKKINDK 369
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 35/138 (25%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI----------------------EAATSRKGPNT 42
+ E+ ++ A++ELNG+ +N+K + +AA +G N
Sbjct: 347 NFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQN- 405
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCI 94
+++ NL D ++RELF +G + C I+R+ GFV + + ++ +
Sbjct: 406 ----LYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQAL 461
Query: 95 KELNGMMVDGKPMKVVVA 112
E+NG M+ GKP+ V A
Sbjct: 462 TEMNGKMISGKPLYVAFA 479
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 62
N + A++ LN +N KP+++ + ++ R G + +F+ NL +
Sbjct: 172 NPMDAARAMEALNFAPLNNKPIRVMYSNRDPSSRRSG----SANIFIKNLDKTIDNKTLH 227
Query: 63 ELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+ F +G ++ C + + +GFV + + +K LNGM+++ KP+ V
Sbjct: 228 DTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYV 282
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 93
PTT ++VG+L N ++ ELF G VV + R+ Y +V+ +P D +
Sbjct: 120 PTTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARA 179
Query: 94 IKELNGMMVDGKPMKVVVA 112
++ LN ++ KP++V+ +
Sbjct: 180 MEALNFAPLNNKPIRVMYS 198
>gi|432921333|ref|XP_004080106.1| PREDICTED: RNA-binding protein 4.1-like [Oryzias latipes]
Length = 335
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMVDG 104
K+F+GNLS T E+ LF YG V EC RNY FVH+D K I+EL+ V G
Sbjct: 3 KIFIGNLSPETEKEEIEALFREYGAVTECAKYRNYAFVHMDDRKCATKAIRELHLRRVGG 62
Query: 105 KPMKV 109
+ M V
Sbjct: 63 RAMNV 67
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ + AI+EL+ + V + + +E + K P K+ V N+ + + E+REL
Sbjct: 41 HMDDRKCATKAIRELHLRRVGGRAMNVEPSRG-KNPQG-ALKLHVVNVEKGSES-ELREL 97
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPDIN-KCIKELNGMMVDGKPMKVVVA 112
F YG+V EC +++N+ FVH+ + D ++ L+ GK ++V V+
Sbjct: 98 FEEYGSVTECAVIKNFAFVHMANYDEGMDALQALDNKDFQGKRIQVRVS 146
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIFIGN++P T E I LF +YG V EC +NY FV
Sbjct: 3 KIFIGNLSPETEKEEIEALFREYGAVTECAKYRNYAFV 40
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 301 GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G + G K+ + NV G+ EL R LFE+YG V EC V+KN+ FV
Sbjct: 72 GKNPQGALKLHVVNVEKGSESEL-RELFEEYGSVTECAVIKNFAFV 116
>gi|353238715|emb|CCA70653.1| hypothetical protein PIIN_04589 [Piriformospora indica DSM 11827]
Length = 410
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 14 TAIKELNGQIVNEKPLKIEAATSRKGPNTPT------------TKVFVGNLSDNTRAPEV 61
T +E I N P + + R+ N P KV+VGNL D+TR ++
Sbjct: 5 TKSQETQRVIENATPKDEQQLSIREQQNEPNDASLPGTDIKLANKVYVGNLPDDTREADL 64
Query: 62 RELFVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFISSI-- 118
++ F +G + ++ YGFV DS + K NG G ++V A +
Sbjct: 65 QDCFKEFGVIKSIELKTGYGFVAFDSRQAAEEAAKTYNGGSFLGNTIRVAPAHGTNKTGS 124
Query: 119 LSCLNVIFFIRCGRGGHWSKECP 141
S + +CG GHW++ECP
Sbjct: 125 KSLVEPGACFKCGNHGHWARECP 147
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 64/114 (56%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAP 59
E +E ++A+K LNG ++N+KP+ + ++ + + K VFV NLS++T
Sbjct: 256 QYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSSDKAKFNNVFVKNLSESTTKE 315
Query: 60 EVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGK 105
++ ++F YGT+ ++ R +GFV+ +SP D + ++ELNG ++ K
Sbjct: 316 DLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELNGKKINDK 369
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 35/138 (25%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI----------------------EAATSRKGPNT 42
+ E+ ++ A++ELNG+ +N+K + +AA +G N
Sbjct: 347 NFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQN- 405
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCI 94
+++ NL D ++RELF +G + C I+R+ GFV + + ++ +
Sbjct: 406 ----LYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQAL 461
Query: 95 KELNGMMVDGKPMKVVVA 112
E+NG M+ GKP+ V A
Sbjct: 462 TEMNGKMISGKPLYVAFA 479
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 62
N + A++ LN +N KP+++ + ++ R G + +F+ NL +
Sbjct: 172 NPMDAARAMEALNFAPLNNKPIRVMYSNRDPSSRRSG----SANIFIKNLDKTIDNKTLH 227
Query: 63 ELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+ F +G ++ C + + +GFV + + +K LNGM+++ KP+ V
Sbjct: 228 DTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYV 282
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 93
PTT ++VG+L N ++ ELF G VV + R+ Y +V+ +P D +
Sbjct: 120 PTTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARA 179
Query: 94 IKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFIR 129
++ LN ++ KP++V+ + S + FI+
Sbjct: 180 MEALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIK 215
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-PNTPT----TKVFVGNLSDNTRAP 59
E DE + AI +LNG ++N+K + + ++ N+P V+V NLS+NT
Sbjct: 174 QYERDEAAQAAIDKLNGMLMNDKKVYVGPFIRKQERDNSPGQVKFNNVYVKNLSENTTED 233
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGK 105
+++E+F +GT+ ++R +GFV+ +SP D + ++ELNG D K
Sbjct: 234 DLKEIFGKFGTITSAVVMREGDGRSKCFGFVNFESPDDAAQAVQELNGKKFDDK 287
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKV 47
+ E+ ++ A++ELNG+ ++K K E T +
Sbjct: 265 NFESPDDAAQAVQELNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNL 324
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
++ NL D+ ++RELF YGT+ C ++R+ GFV S D ++ + E+N
Sbjct: 325 YLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNS 384
Query: 100 MMVDGKPMKVVVA 112
MV KP+ V +A
Sbjct: 385 KMVGSKPLYVALA 397
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 15/112 (13%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 71
A++ LN +N KP++I S + P+ + T +F+ NL + + + F +G +
Sbjct: 97 ALEMLNFTPINGKPIRI--MYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNI 154
Query: 72 VECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFI 115
+ C + + YGFV + + + I +LNGM+++ K KV V FI
Sbjct: 155 LSCKVATDASGESKGYGFVQYERDEAAQAAIDKLNGMLMNDK--KVYVGPFI 204
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 93
P T ++VG+L + + ++ ++F G VV + R+ Y +V+ SP D +
Sbjct: 38 PATSLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARA 97
Query: 94 IKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFIR 129
++ LN ++GKP++++ + S+ FI+
Sbjct: 98 LEMLNFTPINGKPIRIMYSNRDPSLRKSGTANIFIK 133
>gi|238231787|ref|NP_001154080.1| RNA-binding protein 4B [Oncorhynchus mykiss]
gi|225703906|gb|ACO07799.1| RNA-binding protein 4B [Oncorhynchus mykiss]
Length = 165
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ + AI+ L+ ++ + +EA+ +G N K+ V N+ + E+R L
Sbjct: 41 HMDDRKSATKAIRSLHLYKLHGTAINVEAS---RGKNQGAVKLHVTNV-EKGNDDELRTL 96
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
F YGTV EC IV+N+ FVH+D+ D IK L+ + GK + V ++
Sbjct: 97 FEEYGTVSECAIVKNFAFVHMDNSDEALDAIKGLDNIEFQGKRIHVQIS 145
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+F+GN+ E++ LF YG V C IV+N+ FVH+D K I+ L+ + G
Sbjct: 3 KIFIGNVPRGADKDEIQALFSQYGAVTVCAIVKNFAFVHMDDRKSATKAIRSLHLYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 TAINV 67
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ GT + +EA + G K+ + NV G EL R LFE+YG V EC +VKN+
Sbjct: 58 YKLHGTAINVEASRGK---NQGAVKLHVTNVEKGNDDEL-RTLFEEYGTVSECAIVKNFA 113
Query: 345 FV 346
FV
Sbjct: 114 FV 115
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIFIGNV G + I+ LF +YG V C +VKN+ FV
Sbjct: 3 KIFIGNVPRGADKDEIQALFSQYGAVTVCAIVKNFAFV 40
>gi|410914728|ref|XP_003970839.1| PREDICTED: uncharacterized protein LOC101079913 [Takifugu rubripes]
Length = 577
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 11/106 (10%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 74
AI+ L+G+ +PL +E + +R PN+ TKVFVGN+S A ++ LF +G V++C
Sbjct: 91 AIRHLDGKEYRGRPLVVEESRARP-PNS--TKVFVGNISATCSADDLHGLFASFGRVLDC 147
Query: 75 DIVR-------NYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA 112
D V+ Y FVH++ + I LNG M G+ + V ++
Sbjct: 148 DKVKARLCSNVGYAFVHMERKEEAMAAIDALNGTMFKGRQLAVELS 193
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 19 LNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 78
LNG ++ PL + G N K+FVGNL + E+ +LF PYG + C ++R
Sbjct: 21 LNGSTLS--PLADALDSEMSGENV---KLFVGNLPIDATQDELNKLFAPYGEINTCSLLR 75
Query: 79 NYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
Y FV + ++ I+ L+G G+P+ V
Sbjct: 76 QYAFVTLKGEGAADRAIRHLDGKEYRGRPLVV 107
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 291 VVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 341
+VV E+R P S+ K+F+GN++ S + + LF +G+V++CD VK
Sbjct: 105 LVVEESRARPPNST----KVFVGNISATCSADDLHGLFASFGRVLDCDKVK 151
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 35/138 (25%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI----------------------EAATSRKGPNT 42
+ EN ++ A+ LNG++V++K + EAA +G N
Sbjct: 254 NFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGAN- 312
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCI 94
+++ NL D+ +++ELF P+GT+ C ++R+ GFV +PD ++ +
Sbjct: 313 ----LYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRAL 368
Query: 95 KELNGMMVDGKPMKVVVA 112
E+NG MV KP+ V +A
Sbjct: 369 VEMNGKMVVSKPLYVALA 386
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAP 59
+N+E AI++LNG ++N+K + + ++ + K VFV NLS+ T
Sbjct: 163 QFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEE 222
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 105
++ + F +GT+ ++R+ +GFV+ + + D + + LNG +VD K
Sbjct: 223 DLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDK 276
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 13/113 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVREL 64
N ++ A+ LN +N KP+++ S + P+ + +F+ NL + +
Sbjct: 79 NPQDAARALDVLNFTPLNGKPIRV--MYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDT 136
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPDIN-KCIKELNGMMVDGKPMKV 109
F +G+++ C + + YGFV D+ + K I++LNGM+++ K + V
Sbjct: 137 FSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYV 189
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 39 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 89
G N TT ++VG+L N ++ ++F G VV + R+ YG+V+ +P D
Sbjct: 23 GANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQD 82
Query: 90 INKCIKELNGMMVDGKPMKVV 110
+ + LN ++GKP++V+
Sbjct: 83 AARALDVLNFTPLNGKPIRVM 103
>gi|198434688|ref|XP_002126691.1| PREDICTED: similar to RNA binding motif protein 4B [Ciona
intestinalis]
Length = 290
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDG 104
K+FVG L+ A ++RELF YGTV +CDI+R+YGFVH+ S + K I L+ + G
Sbjct: 3 KIFVGRLAPTVTAVQLRELFENYGTVSDCDILRDYGFVHMSSEVEAQKAITALDKYELVG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 SKLSV 67
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+G + P + +R LFE YG V +CD++++YGFV
Sbjct: 3 KIFVGRLAPTVTAVQLRELFENYGTVSDCDILRDYGFV 40
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM ++ E + AI L+ + L +E +TSR + + ++ V NL T ++ +L
Sbjct: 41 HMSSEVEAQKAITALDKYELVGSKLSVEMSTSR---SMKSCQLTVKNLPRGTNPQDLHKL 97
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVVVA 112
F +GTV C I + VH+ P + ++ L+G + G + V +A
Sbjct: 98 FKKFGTVTLCRISSDQAVVHMRFPSMATNAVRNLSGEIYRGNVLSVELA 146
>gi|449501704|ref|XP_004161443.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
2-like [Cucumis sativus]
Length = 576
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 35/138 (25%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI----------------------EAATSRKGPNT 42
+ EN ++ A+ LNG++V++K + EAA +G N
Sbjct: 176 NFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGAN- 234
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCI 94
+++ NL D+ +++ELF P+GT+ C ++R+ GFV +PD ++ +
Sbjct: 235 ----LYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRAL 290
Query: 95 KELNGMMVDGKPMKVVVA 112
E+NG MV KP+ V +A
Sbjct: 291 VEMNGKMVVSKPLYVALA 308
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAP 59
+N+E AI++LNG ++N+K + + ++ + K VFV NLS+ T
Sbjct: 85 QFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEE 144
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 105
++ + F +GT+ ++R+ +GFV+ + + D + + LNG +VD K
Sbjct: 145 DLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDK 198
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ LN N KP+++ S + P+ + +F+ NL + + F +G++
Sbjct: 8 ALDVLNFTPXNGKPIRV--MYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSI 65
Query: 72 VECDIV-------RNYGFVHIDSPDIN-KCIKELNGMMVDGKPMKV 109
+ C + + YGFV D+ + K I++LNGM+++ K + V
Sbjct: 66 LSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYV 111
>gi|149061996|gb|EDM12419.1| rCG48334, isoform CRA_d [Rattus norvegicus]
Length = 173
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPM 107
F YG V+ECDIV++Y FVH++ + D + I+ L+ G+ +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGESL 141
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|311771542|ref|NP_001185773.1| RNA-binding protein 4 isoform 3 [Homo sapiens]
gi|397517073|ref|XP_003828744.1| PREDICTED: RNA-binding protein 4 isoform 3 [Pan paniscus]
gi|426369351|ref|XP_004051656.1| PREDICTED: RNA-binding protein 4 isoform 4 [Gorilla gorilla
gorilla]
gi|410222934|gb|JAA08686.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254454|gb|JAA15194.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410295010|gb|JAA26105.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352745|gb|JAA42976.1| RNA binding motif protein 4 [Pan troglodytes]
Length = 173
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGK 105
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGK 139
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|26352530|dbj|BAC39895.1| unnamed protein product [Mus musculus]
gi|74183052|dbj|BAE20479.1| unnamed protein product [Mus musculus]
gi|74186507|dbj|BAE34743.1| unnamed protein product [Mus musculus]
Length = 168
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPM 107
F YG V+ECDIV++Y FVH++ + D + I+ L+ G+ +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGESL 141
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|332020797|gb|EGI61195.1| RNA-binding protein 14 [Acromyrmex echinatior]
Length = 383
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 26 EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI 85
+ + A T T TK+FVG L +N R E+R+LF+ +G V ECD++ YGFVH+
Sbjct: 2 DTSVGYHATTETSAAGTRKTKIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFVHM 61
Query: 86 D-SPDINKCIKELNGMMVDGKPMKV 109
D IK L+ G + V
Sbjct: 62 AREEDAAAAIKALHNSNFKGATINV 86
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 303 SSVGT--FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
S+ GT KIF+G + + +R LF ++G+V ECDV+ YGFV
Sbjct: 14 SAAGTRKTKIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFV 59
>gi|432888609|ref|XP_004075076.1| PREDICTED: RNA-binding protein 4B-like [Oryzias latipes]
Length = 346
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+FVGNL E++ LF YGTV ECDIV+N+ FVH+ D K IK L+ + G
Sbjct: 3 KIFVGNLPQEATEEEIKALFEEYGTVTECDIVKNFAFVHMEDRKAATKAIKNLHQHSLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 TAINV 67
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 5/109 (4%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HME+ + AIK L+ ++ + +EA+ G N K+ V N+ E+R L
Sbjct: 41 HMEDRKAATKAIKNLHQHSLHGTAINVEAS---HGKNFGPVKIHVANVEKGCDE-ELRAL 96
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
F YGTV EC +V+N+ FVH+ + D IKEL+ K + V V+
Sbjct: 97 FEEYGTVSECAVVKNFAFVHMPNYDEAMDAIKELDNSDFQEKRIHVQVS 145
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GN+ + E I+ LFE+YG V ECD+VKN+ FV
Sbjct: 3 KIFVGNLPQEATEEEIKALFEEYGTVTECDIVKNFAFV 40
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 289 GTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
GT + +EA + F G KI + NV G EL R LFE+YG V EC VVKN+ FV
Sbjct: 62 GTAINVEASHGKNF---GPVKIHVANVEKGCDEEL-RALFEEYGTVSECAVVKNFAFV 115
>gi|221221726|gb|ACM09524.1| RNA-binding protein 4B [Salmo salar]
gi|221222322|gb|ACM09822.1| RNA-binding protein 4B [Salmo salar]
Length = 166
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ + AI+ L+ ++ + +EA+ +G N K+ V N+ + E+R L
Sbjct: 41 HMDDRKSATKAIRSLHLYKLHGTAINVEAS---RGKNQGAVKLHVTNV-EKGNDDELRTL 96
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
F YGTV EC IV+N+ FVH+D+ D IK L+ + GK + V ++
Sbjct: 97 FEEYGTVSECAIVKNFAFVHMDNSDEALDAIKGLDNVEFQGKRIHVQIS 145
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+F+GN+ E++ LF YG V EC IV+N+ FVH+D K I+ L+ + G
Sbjct: 3 KIFIGNVPREADKDEIQALFSQYGAVTECAIVKNFAFVHMDDRKSATKAIRSLHLYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 TAINV 67
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ GT + +EA + G K+ + NV G EL R LFE+YG V EC +VKN+
Sbjct: 58 YKLHGTAINVEASRGK---NQGAVKLHVTNVEKGNDDEL-RTLFEEYGTVSECAIVKNFA 113
Query: 345 FV 346
FV
Sbjct: 114 FV 115
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIFIGNV + I+ LF +YG V EC +VKN+ FV
Sbjct: 3 KIFIGNVPREADKDEIQALFSQYGAVTECAIVKNFAFV 40
>gi|358339074|dbj|GAA47201.1| RNA-binding protein 4.1 [Clonorchis sinensis]
Length = 328
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
K+FVGNL+ T+A ++R+ F YG V ECD+V NYGFVH++ D + L ++DG
Sbjct: 3 KLFVGNLNPETKAADLRKKFEAYGKVTECDVVNNYGFVHMEKDSDAEAALAGLQDSILDG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VKINV 67
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 28/38 (73%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+GN+NP T +R FE YGKV ECDVV NYGFV
Sbjct: 3 KLFVGNLNPETKAADLRKKFEAYGKVTECDVVNNYGFV 40
>gi|149062001|gb|EDM12424.1| rCG48244, isoform CRA_b [Rattus norvegicus]
Length = 172
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGK 105
F YG V+ECDIV++Y FVH++ + D + I+ L+ G+
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGE 139
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 284 RYQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 57 HYKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 344 GFV 346
FV
Sbjct: 114 AFV 116
>gi|443724663|gb|ELU12567.1| hypothetical protein CAPTEDRAFT_224043 [Capitella teleta]
Length = 454
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMM 101
PT K+F+GN+++ T +V++LF +G VVE D++ +GFVH+ S D I LNG M
Sbjct: 172 PTVKIFIGNIAEGTVTADVQQLFADFGEVVEADVLTGFGFVHMRSEEDAEAAIAALNGFM 231
Query: 102 VDGKPMKVVVAGFIS 116
++G P+ V ++ I+
Sbjct: 232 LNGSPINVEMSTGIN 246
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
TKVFVGNLS + ++RELF P+G VVE D++ +GFVH+ + D I LNG V
Sbjct: 3 TKVFVGNLSPDCSNDKLRELFEPFGEVVEHDVLSGFGFVHMANEEDAKNAITGLNGTNVL 62
Query: 104 GKPMKVVVA 112
G+ + V ++
Sbjct: 63 GRHISVEIS 71
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 29/38 (76%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+GN++P S + +R LFE +G+VVE DV+ +GFV
Sbjct: 4 KVFVGNLSPDCSNDKLRELFEPFGEVVEHDVLSGFGFV 41
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T KIFIGN+ GT ++ LF +G+VVE DV+ +GFV
Sbjct: 173 TVKIFIGNIAEGTVTADVQQLFADFGEVVEADVLTGFGFV 212
>gi|426252106|ref|XP_004019759.1| PREDICTED: RNA-binding protein 4B isoform 2 [Ovis aries]
Length = 147
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
F YG V+ECDIV++Y FVH++ + D + I+ L+ G
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQG 138
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 284 RYQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 57 HYKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 344 GFV 346
FV
Sbjct: 114 AFV 116
>gi|198425362|ref|XP_002128423.1| PREDICTED: similar to RNA binding motif protein 4 like [Ciona
intestinalis]
Length = 403
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+FVGN++D E+R+LF YG V ECD++ YGFVH+ + + IK L+ V G
Sbjct: 3 KIFVGNIADGVTTEEMRDLFEQYGNVTECDVLGTYGFVHLATDAEAEHAIKNLDKRDVKG 62
Query: 105 KPMKV 109
+ + V
Sbjct: 63 QQINV 67
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GN+ G + E +R LFE+YG V ECDV+ YGFV
Sbjct: 3 KIFVGNIADGVTTEEMRDLFEQYGNVTECDVLGTYGFV 40
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 28 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHI 85
P+ +AT++ TK+ V NL D + E+R+LF YG V ECD+V R FVHI
Sbjct: 103 PMVDNSATAKSARRAGCTKLHVANLPDGVYSGELRDLFSRYGYVAECDVVEDRKIAFVHI 162
Query: 86 DSPDINKCIKELNGMMVDGKPMKVVVA 112
+ + I LNG G P+KV ++
Sbjct: 163 EDAAADAAIHALNGHNFKGIPLKVQMS 189
>gi|1149523|emb|CAA64070.1| Neosin [Mus musculus]
Length = 153
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 28 PLKIEAATSRKGPNT--PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI 85
P +I SR P K+F+GNL E+R LF YG V+ECDI++NYGFVHI
Sbjct: 5 PCRILRLNSRPLPEALVRMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHI 64
Query: 86 -DSPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNV 124
D I+ L+ + G + V + S + L+V
Sbjct: 65 EDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKASTKLHV 104
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 291 VVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
++ + +R +P + V K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 8 ILRLNSRPLPE-ALVRMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 62
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 63 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 119
Query: 65 FVPYGTVVECDIVR 78
F YG V+ECDIV+
Sbjct: 120 FEEYGPVIECDIVK 133
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 341
Y+ G + +EA S + K+ +GN++P + + +R FE+YG V+ECD+VK
Sbjct: 80 YKLHGVNINVEASKN---KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK 133
>gi|159164258|pdb|2DNQ|A Chain A, Solution Structure Of Rna Binding Domain 1 In Rna-Binding
Protein 30
Length = 90
Score = 58.5 bits (140), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
S G K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 47
Score = 57.8 bits (138), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 86
K+F+GNL E+R LF YG V+ECDI++NYGFVHI+
Sbjct: 10 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIE 50
>gi|320169407|gb|EFW46306.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 200
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDI----VRNYGFVHI-DSPDINKCIKELNGMM 101
+F+G L +TR ++ ++F PYG +V CDI V ++GFV D D + NG
Sbjct: 3 LFIGRLDRDTRVRDLEDIFQPYGRLVRCDIKGGAVYSFGFVEFEDRRDAEDALNRENGRN 62
Query: 102 VDGKPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECP 141
V G +++ V S + F RC + GHW+K+CP
Sbjct: 63 VRG--VRIAVEWAKGQNRSADSDSCF-RCNKPGHWAKDCP 99
>gi|351710885|gb|EHB13804.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 192
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 40 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 99
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 100 VNINVEASKNKSKASTKLHV 119
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 78 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 134
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGK 105
F YG V+ECDIV++Y FVH++ + D + I+ L+ G+
Sbjct: 135 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGE 176
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 301 GFSS-VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
GF + V K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 31 GFQALVRMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 77
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 284 RYQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
Y+ G + +EA S + K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 94 HYKLHGVNINVEASKN---KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 150
Query: 344 GFV 346
FV
Sbjct: 151 AFV 153
>gi|328714281|ref|XP_001942511.2| PREDICTED: hypothetical protein LOC100167647 [Acyrthosiphon pisum]
Length = 203
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 84 HIDSPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNV-IFFIRCGRGGHWSKECPR 142
HIDS D+++ IK+LNG M+D KP+KV ++ + + RCG+GGHWS+EC R
Sbjct: 65 HIDSTDVSRLIKDLNGHMLDDKPIKVQISNSRVRQRPGMGMPEQCYRCGKGGHWSRECTR 124
Query: 143 AG 144
G
Sbjct: 125 EG 126
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 63/112 (56%), Gaps = 13/112 (11%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAPEV 61
+++E +TAI +LNG ++N+K + + ++ ++ +K ++V NLSD+T ++
Sbjct: 176 DSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDL 235
Query: 62 RELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGK 105
R+ F YGT+ ++R+ +GFV+ ++P D K + LNG D K
Sbjct: 236 RKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDK 287
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR-------KGPNTPTTK----------V 47
+ EN E+ A+ LNG+ ++K + A + K T K +
Sbjct: 265 NFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNL 324
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
+V NL D +++ELF YGT+ C ++R+ GFV +P + ++ + E+NG
Sbjct: 325 YVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNG 384
Query: 100 MMVDGKPMKVVVA 112
M+ KP+ V +A
Sbjct: 385 KMIVSKPLYVALA 397
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVREL 64
N ++ AI LN +N K +++ + SR+ P + +F+ NL + + E
Sbjct: 90 NQQDATRAIDVLNFTPLNNKTIRV--SVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHET 147
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVV 111
F +GT++ C I + YGFV DS + + I +LNGM+++ K + V V
Sbjct: 148 FSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGV 202
>gi|397517077|ref|XP_003828746.1| PREDICTED: RNA-binding protein 4 isoform 5 [Pan paniscus]
Length = 155
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPD 89
F YG V+ECDIV++Y FVH++ +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAE 122
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 284 RYQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 57 HYKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDY 113
Query: 344 GFV 346
FV
Sbjct: 114 AFV 116
>gi|345480430|ref|XP_001601630.2| PREDICTED: hypothetical protein LOC100117370 [Nasonia vitripennis]
Length = 377
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 40 PNTP-TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKEL 97
P++P TK+FVG L +N R+ E+R LF+ +G V ECD++ YGFVH+ D + IK L
Sbjct: 9 PSSPRKTKIFVGRLPENCRSEELRNLFLRFGEVTECDVMNRYGFVHMAREEDAAEAIKAL 68
Query: 98 NGMMVDGKPMKV 109
+ G + V
Sbjct: 69 HNTSFKGATINV 80
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+G + E +R LF ++G+V ECDV+ YGFV
Sbjct: 16 KIFVGRLPENCRSEELRNLFLRFGEVTECDVMNRYGFV 53
>gi|426369357|ref|XP_004051659.1| PREDICTED: RNA-binding protein 4B isoform 3 [Gorilla gorilla
gorilla]
Length = 151
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPM 107
F YG V+ECDIV++Y FVH++ + D + I+ L+ G+ +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGELL 141
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 284 RYQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 57 HYKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 344 GFV 346
FV
Sbjct: 114 AFV 116
>gi|209155952|gb|ACI34208.1| RNA-binding protein 4B [Salmo salar]
Length = 345
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ + AI+ L+ ++ +P+ +E + +G N K+ V N+ E+R L
Sbjct: 41 HMDDRKSATKAIRSLHLFKLHGRPINVEPS---RGKNQGPVKLHVANVEKGN-GDELRTL 96
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFISSILSCLN 123
F YGTV EC I++N+ F+H+ + D K IK L+ GK + V ++ S
Sbjct: 97 FEEYGTVTECAIIKNFAFIHMSNSDEAKDAIKGLDNTDFQGKRIHVQMS---KSRPRGEE 153
Query: 124 VIFFIRCGRGGHW 136
+ RGG+W
Sbjct: 154 EDYGPPLDRGGYW 166
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+F+GNL + E+ LF +GTV EC +NY FVH+D K I+ L+ + G
Sbjct: 3 KIFIGNLPNEVEKDEIEALFTEHGTVTECAKFKNYAFVHMDDRKSATKAIRSLHLFKLHG 62
Query: 105 KPMKV 109
+P+ V
Sbjct: 63 RPINV 67
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G K+ + NV G EL R LFE+YG V EC ++KN+ F+
Sbjct: 76 GPVKLHVANVEKGNGDEL-RTLFEEYGTVTECAIIKNFAFI 115
>gi|345312744|ref|XP_003429290.1| PREDICTED: RNA-binding protein 4B-like isoform 2 [Ornithorhynchus
anatinus]
Length = 143
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNMELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
F YG V+ECDIV++Y FVH++ + D + I+ L+ G
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQG 138
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 284 RYQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
Y+ G + +EA +S K+ +GN++P + +R FE+YG V+ECD+VK+Y
Sbjct: 57 HYKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNMELRAKFEEYGPVIECDIVKDY 113
Query: 344 GFV 346
FV
Sbjct: 114 AFV 116
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 23/119 (19%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL----------KIEAATSRKGPNTPTTKVFVGNLSD 54
EN+E+ ++AI LNG +VN++ + +IEA S K T V+V NLS+
Sbjct: 167 QFENEEDAQSAINRLNGMLVNDREVYVGPFVRRLERIEANGSPK-----FTNVYVKNLSE 221
Query: 55 NTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGK 105
T +++++F YG + ++ R +GFV+ SPD +++LNGM K
Sbjct: 222 TTSDEDLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAAVEKLNGMTFSDK 280
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 21 GQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 77
G+ E K E + + +++ NL D ++ELF +G++ C ++
Sbjct: 291 GEREAELKAKFEQERNSRYEKMKAANLYLKNLGDTIDEERLKELFSEFGSITSCKVMLDQ 350
Query: 78 ----RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIF 126
+ GFV +P + ++ + E+NG M+ KP+ V +A ++ L F
Sbjct: 351 QGLSKGSGFVAFSTPEEASRALSEMNGKMIGKKPLYVAIAQRREERMARLQAHF 404
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ N ++ A++ LN +N KP++I S + P T + VF+ NL +
Sbjct: 80 NFSNPQDAAKAMEVLNFTPLNGKPIRI--MFSHRDPTTRRSGHANVFIKNLDTKIDNKAL 137
Query: 62 RELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113
E F +G V+ C + + YGF+ ++ D I LNGM+V+ + +V V
Sbjct: 138 YETFASFGPVLSCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDR--EVYVGP 195
Query: 114 FISSI 118
F+ +
Sbjct: 196 FVRRL 200
>gi|385281386|gb|AFI57844.1| polyA binding protein, partial [Cocos nucifera]
Length = 352
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 35/138 (25%)
Query: 5 HMENDEEGRTAIKELNG-------------QIVNEKPLKI---------EAATSRKGPNT 42
+ E+ E A+KELNG Q +E+ +++ EAA +G N
Sbjct: 93 NFEDPEHAAKAVKELNGKKFDGKEWYVGKAQKKSEREMELKGRFEQRMQEAADKNQGAN- 151
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCI 94
+++ NL D+ ++RELF +G++ C ++R+ GFV SP D +K +
Sbjct: 152 ----LYLKNLDDSIGDDKLRELFSEFGSITSCKVMRDPNGVSRGSGFVAFQSPDDASKAL 207
Query: 95 KELNGMMVDGKPMKVVVA 112
E+NG M+ KP+ V +A
Sbjct: 208 AEMNGKMIGSKPLYVALA 225
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 59
+++ +E AI++LNG ++N+K P + +T VFV NLS++T
Sbjct: 2 YVDPEEAAHNAIEKLNGMLLNDKKVFVGPFLRKQDRENTANSTKFNNVFVKNLSESTTED 61
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 105
+ E+F YG + ++R +GFV+ + P+ K +KELNG DGK
Sbjct: 62 NLLEIFGEYGNITSAVVMREGDGKSKCFGFVNFEDPEHAAKAVKELNGKKFDGK 115
>gi|345321114|ref|XP_003430384.1| PREDICTED: RNA-binding protein 4B-like isoform 1 [Ornithorhynchus
anatinus]
gi|345321116|ref|XP_003430385.1| PREDICTED: RNA-binding protein 4B-like isoform 2 [Ornithorhynchus
anatinus]
gi|345321118|ref|XP_003430386.1| PREDICTED: RNA-binding protein 4B-like isoform 3 [Ornithorhynchus
anatinus]
Length = 143
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNMELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGK 105
F YG V+ECDIV++Y FVH++ + D + I+ L+ G+
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGR 139
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 284 RYQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
Y+ G + +EA +S K+ +GN++P + +R FE+YG V+ECD+VK+Y
Sbjct: 57 HYKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNMELRAKFEEYGPVIECDIVKDY 113
Query: 344 GFV 346
FV
Sbjct: 114 AFV 116
>gi|410045417|ref|XP_003951989.1| PREDICTED: RNA-binding protein 4B isoform 1 [Pan troglodytes]
gi|426369355|ref|XP_004051658.1| PREDICTED: RNA-binding protein 4B isoform 2 [Gorilla gorilla
gorilla]
gi|441607717|ref|XP_004087894.1| PREDICTED: RNA-binding protein 4B isoform 2 [Nomascus leucogenys]
Length = 143
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGK 105
F YG V+ECDIV++Y FVH++ + D + I+ L+ G+
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGR 139
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 284 RYQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 57 HYKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 344 GFV 346
FV
Sbjct: 114 AFV 116
>gi|194384258|dbj|BAG64902.1| unnamed protein product [Homo sapiens]
Length = 173
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ A++ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAMRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGK 105
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGK 139
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP 88
K+F+GNL E+R LF YG V+ECDI++NYGFVHI+
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDK 45
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>gi|145525601|ref|XP_001448617.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416172|emb|CAK81220.1| unnamed protein product [Paramecium tetraurelia]
Length = 192
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 45 TKVFVGNLSDN--TRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMM 101
++FV S N T +V+E+F Y +V E +Y FV +S + + +KE NGM
Sbjct: 7 NQLFVAGYSRNKVTDERDVKEIFRKYASVKEVAYKGSYSFVTFNSETEAQEALKETNGMT 66
Query: 102 VDGKPMKV-VVAGFISSILSCLNVIFFIRCGRGGHWSKECP 141
+G+ +KV +V S + +C +GGHW+++CP
Sbjct: 67 YNGQKLKVDIVDNRKSRKTGPSDSDLCFKCSKGGHWARDCP 107
>gi|115452341|ref|NP_001049771.1| Os03g0285900 [Oryza sativa Japonica Group]
gi|108707560|gb|ABF95355.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548242|dbj|BAF11685.1| Os03g0285900 [Oryza sativa Japonica Group]
gi|222624706|gb|EEE58838.1| hypothetical protein OsJ_10413 [Oryza sativa Japonica Group]
Length = 330
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 14/121 (11%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
+T+++VG LS TR+ ++ LF YG + E ++ R+Y F+ P D ++ L+G V
Sbjct: 10 STRLYVGRLSSRTRSRDLEYLFGRYGRIREVELKRDYAFIEFSDPRDADEARYNLDGRDV 69
Query: 103 DGKPMKVVVAGFISSILSCLNVIFFIR-----------CGRGGHWSKECPRAGNFRSSGC 151
DG + V A + + + + R CG GHW+++C +AG++++ C
Sbjct: 70 DGSRILVEFAKGVPRGAAGGSREYMGRGPPPGTGRCFNCGIDGHWARDC-KAGDWKNK-C 127
Query: 152 Y 152
Y
Sbjct: 128 Y 128
>gi|311771540|ref|NP_001185772.1| RNA-binding protein 4 isoform 2 [Homo sapiens]
gi|332249624|ref|XP_003273958.1| PREDICTED: RNA-binding protein 4 isoform 1 [Nomascus leucogenys]
gi|338712241|ref|XP_003362680.1| PREDICTED: RNA-binding protein 4 isoform 3 [Equus caballus]
gi|397517071|ref|XP_003828743.1| PREDICTED: RNA-binding protein 4 isoform 2 [Pan paniscus]
gi|426252102|ref|XP_004019757.1| PREDICTED: RNA-binding protein 4 isoform 2 [Ovis aries]
gi|426369347|ref|XP_004051654.1| PREDICTED: RNA-binding protein 4 isoform 2 [Gorilla gorilla
gorilla]
gi|426369349|ref|XP_004051655.1| PREDICTED: RNA-binding protein 4 isoform 3 [Gorilla gorilla
gorilla]
gi|441607708|ref|XP_003273960.2| PREDICTED: RNA-binding protein 4 isoform 3 [Nomascus leucogenys]
gi|40787678|gb|AAH64960.1| RBM4 protein [Homo sapiens]
gi|410222936|gb|JAA08687.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254456|gb|JAA15195.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410295012|gb|JAA26106.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352749|gb|JAA42978.1| RNA binding motif protein 4 [Pan troglodytes]
Length = 143
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
F YG V+ECDIV++Y FVH++ + D + I+ L+ G
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQG 138
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 284 RYQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 57 HYKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDY 113
Query: 344 GFV 346
FV
Sbjct: 114 AFV 116
>gi|351715649|gb|EHB18568.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 197
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 37 RKGPNTPT--TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 86
R GP +P K+F+GNL E+ LF YG V+ECDI++NYGFVHI+
Sbjct: 7 RTGPVSPRPLVKLFIGNLPRKATEQEIHSLFEQYGKVLECDIIKNYGFVHIE 58
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K N +TK+ VGN+S E+R
Sbjct: 56 HIEDKTAAEDAIRNLHHYKLHSVNINVEAS---KNKNKASTKLHVGNISPTCTNQELRAK 112
Query: 65 FVPYGTVVECDIVRNYGFV 83
F YG V+ECDIV++Y F
Sbjct: 113 FEEYGPVIECDIVKDYAFT 131
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + I LFE+YGKV+ECD++KNYGFV
Sbjct: 18 KLFIGNLPRKATEQEIHSLFEQYGKVLECDIIKNYGFV 55
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+ K+ +GN++P + + +R FE+YG V+ECD+VK+Y F
Sbjct: 91 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFT 131
>gi|197632059|gb|ACH70753.1| zgc:56141-like [Salmo salar]
gi|209155072|gb|ACI33768.1| RNA-binding protein 4B [Salmo salar]
Length = 347
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ + AI+ L+ ++ + +EA+ +G N K+ V N+ E+R L
Sbjct: 41 HMDDRKSATKAIRSLHLYKLHGTAINVEAS---RGKNQGAVKLHVTNVEKGNDD-ELRTL 96
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPDIN-KCIKELNGMMVDGKPMKVVVAGFISSILSCLN 123
F YGTV EC IV+N+ FVH+D+ D IK L+ + GK + V ++ S
Sbjct: 97 FEEYGTVSECAIVKNFAFVHMDNSDEALDAIKGLDNVEFQGKRIHVQIS---KSRPRYEE 153
Query: 124 VIFFIRCGRGGHW 136
+ RGG+W
Sbjct: 154 EEDYPPPQRGGYW 166
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+F+GN+ E++ LF YG V EC IV+N+ FVH+D K I+ L+ + G
Sbjct: 3 KIFIGNVPREADKDEIQALFSQYGAVTECAIVKNFAFVHMDDRKSATKAIRSLHLYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 TAINV 67
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ GT + +EA + G K+ + NV G EL R LFE+YG V EC +VKN+
Sbjct: 58 YKLHGTAINVEASRG---KNQGAVKLHVTNVEKGNDDEL-RTLFEEYGTVSECAIVKNFA 113
Query: 345 FV 346
FV
Sbjct: 114 FV 115
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIFIGNV + I+ LF +YG V EC +VKN+ FV
Sbjct: 3 KIFIGNVPREADKDEIQALFSQYGAVTECAIVKNFAFV 40
>gi|47210651|emb|CAF94319.1| unnamed protein product [Tetraodon nigroviridis]
Length = 256
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+FVGNL E++ LF YGTV EC I++NY FVH+D K IK L+ + G
Sbjct: 3 KIFVGNLPREANQEEIKALFTEYGTVTECAIIKNYAFVHMDDRKAATKAIKNLHLHKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 TAINV 67
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ + AIK L+ ++ + +EA+ G N K+ V N+ E+R L
Sbjct: 41 HMDDRKAATKAIKNLHLHKLHGTAINVEAS---HGKNPGAVKLHVANVEKGAD-DELRAL 96
Query: 65 FVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDGK 105
F YG+V EC +V+N+ FVH+ +S + IK L+ GK
Sbjct: 97 FEEYGSVTECAVVKNFAFVHMSNSDEAMDAIKGLDNTEFQGK 138
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
++ GT + +EA + + G K+ + NV G EL R LFE+YG V EC VVKN+
Sbjct: 58 HKLHGTAINVEASHG---KNPGAVKLHVANVEKGADDEL-RALFEEYGSVTECAVVKNFA 113
Query: 345 FV 346
FV
Sbjct: 114 FV 115
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GN+ + E I+ LF +YG V EC ++KNY FV
Sbjct: 3 KIFVGNLPREANQEEIKALFTEYGTVTECAIIKNYAFV 40
>gi|55562787|gb|AAH86338.1| Rbm4b protein [Rattus norvegicus]
gi|60334832|gb|AAH90633.1| Rbm4 protein [Mus musculus]
gi|148701114|gb|EDL33061.1| mCG8382, isoform CRA_b [Mus musculus]
gi|149061995|gb|EDM12418.1| rCG48334, isoform CRA_c [Rattus norvegicus]
gi|219841854|gb|AAI44951.1| Rbm4 protein [Mus musculus]
Length = 143
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
F YG V+ECDIV++Y FVH++ + D + I+ L+ G
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQG 138
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 284 RYQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 57 HYKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDY 113
Query: 344 GFV 346
FV
Sbjct: 114 AFV 116
>gi|119594962|gb|EAW74556.1| RNA binding motif protein 4, isoform CRA_c [Homo sapiens]
Length = 79
Score = 57.8 bits (138), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 86
K+F+GNL E+R LF YG V+ECDI++NYGFVHI+
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIE 43
Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
>gi|417396175|gb|JAA45121.1| Putative rna-binding protein lark [Desmodus rotundus]
Length = 143
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRTLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
F YG V+ECDIV++Y FVH++ + D + I+ L+ G
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQG 138
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRTLFEQYGKVLECDIIKNYGFV 40
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 284 RYQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 57 HYKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDY 113
Query: 344 GFV 346
FV
Sbjct: 114 AFV 116
>gi|221222294|gb|ACM09808.1| RNA-binding protein 4B [Salmo salar]
Length = 229
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ + AI+ L+ ++ + +EA+ +G N K+ V N+ + E+R L
Sbjct: 41 HMDDRKSATKAIRSLHLYKLHGTAINVEAS---RGKNQGAVKLHVTNV-EKGNDDELRTL 96
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPDIN-KCIKELNGMMVDGKPMKVVVA 112
F YGTV EC IV+N+ FVH+D+ D IK L+ + GK + V ++
Sbjct: 97 FEEYGTVSECAIVKNFAFVHMDNSDEALDAIKGLDNVEFQGKRIHVQIS 145
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+F+GN+ E++ LF YG V EC IV+N+ FVH+D K I+ L+ + G
Sbjct: 3 KIFIGNVPREADKDEIQALFSQYGAVTECAIVKNFAFVHMDDRKSATKAIRSLHLYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 TAINV 67
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ GT + +EA + G K+ + NV G EL R LFE+YG V EC +VKN+
Sbjct: 58 YKLHGTAINVEASRG---KNQGAVKLHVTNVEKGNDDEL-RTLFEEYGTVSECAIVKNFA 113
Query: 345 FV 346
FV
Sbjct: 114 FV 115
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIFIGNV + I+ LF +YG V EC +VKN+ FV
Sbjct: 3 KIFIGNVPREADKDEIQALFSQYGAVTECAIVKNFAFV 40
>gi|168018573|ref|XP_001761820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686875|gb|EDQ73261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 16/103 (15%)
Query: 18 ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV 77
EL + E+ +IE +G N +++ NL D ++RELF YGT+ C ++
Sbjct: 287 ELRAKFEQERKERIE---KYQGVN-----LYLKNLDDTVDDEKIRELFAEYGTITSCKVM 338
Query: 78 RNY-------GFVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
R++ GFV SPD + + E+NG MV KP+ V +A
Sbjct: 339 RDHQGQSKGSGFVAFSSPDEATRAVTEMNGKMVGNKPLYVALA 381
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 59
E +E + AI+++NG ++N+K P + G + V+V NL+D T
Sbjct: 158 QFEQEESAQNAIEKVNGMLLNDKQVFVGPFVRRQERDQAGGVSKFNNVYVKNLADVTTDD 217
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGK 105
E++++F +G + ++R+ +GFV+ + P D K ++ L G D K
Sbjct: 218 ELKKVFGAWGPISSAVVMRDNDGKSKCFGFVNFEHPDDAAKAVEALQGKKFDEK 271
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVREL 64
N ++ A++ LN VN KP++I S + P+ + T +F+ NL + + +
Sbjct: 74 NAQDATRALELLNFTGVNGKPIRI--MFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDT 131
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
F +G ++ C + + YGFV + + I+++NGM+++ K +V V F+
Sbjct: 132 FAAFGNILSCKVATDASGQSKGYGFVQFEQEESAQNAIEKVNGMLLNDK--QVFVGPFV 188
>gi|326926668|ref|XP_003209520.1| PREDICTED: RNA-binding protein 4B-like [Meleagris gallopavo]
Length = 154
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VCINVEASKNKSKASTKLHV 82
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHHKLHGVCINVEAS---KNKSKASTKLHVGNISPTCTNLELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
F YG V+ECDIV++Y FVH++ + D + I+ L+ G
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQG 138
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 284 RYQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
++ G + +EA +S K+ +GN++P + +R FE+YG V+ECD+VK+Y
Sbjct: 57 HHKLHGVCINVEASKNKSKAST---KLHVGNISPTCTNLELRAKFEEYGPVIECDIVKDY 113
Query: 344 GFV 346
FV
Sbjct: 114 AFV 116
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 7 ENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEV 61
E DE AI++LNG ++N+K P + N VFV NLS+ T ++
Sbjct: 170 ERDEAAHAAIEKLNGMLMNDKKVYVGPFIRKQERDNSPGNVKFNNVFVKNLSETTTEDDL 229
Query: 62 RELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 105
RE+F +GT+ ++R +GFV+ +SPD +++LNG D K
Sbjct: 230 REIFGKFGTITSVVVMREGDGRSKCFGFVNFESPDEAALAVQDLNGKKFDDK 281
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKV 47
+ E+ +E A+++LNG+ ++K K E T +
Sbjct: 259 NFESPDEAALAVQDLNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQETADKYQNTNL 318
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
++ NL D ++RELF +G + C ++R+ GFV S D ++ + E+N
Sbjct: 319 YLKNLDDTVDDEKLRELFAEFGAITSCKVMRDSNGASRGSGFVAFKSAEDASRALAEMNN 378
Query: 100 MMVDGKPMKVVVA 112
MV KP+ V +A
Sbjct: 379 KMVGSKPLYVALA 391
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 15/112 (13%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 71
A++ LN +N +P++I S + P+ + T +F+ NL + + + F +G +
Sbjct: 91 ALEMLNFTPINGRPIRI--MYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNI 148
Query: 72 VECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+ C + + YGFV + + + I++LNGM+++ K KV V FI
Sbjct: 149 LSCKVATDASGESKGYGFVQYERDEAAHAAIEKLNGMLMNDK--KVYVGPFI 198
>gi|410974606|ref|XP_003993734.1| PREDICTED: RNA-binding protein 14 isoform 1 [Felis catus]
Length = 669
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V C ++ +Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFDQRGKVYVCTLISDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LF++ GKV C ++ +Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFDQRGKVYVCTLISDYAFV 117
>gi|221114604|ref|XP_002164525.1| PREDICTED: uncharacterized protein LOC100215128 [Hydra
magnipapillata]
Length = 307
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 39 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD-INKCIKEL 97
G + T K+++G + + +V E+ YG V D+V+NY F +++ D I
Sbjct: 6 GIDDKTIKLYIGGIDPSWSNEKVTEILSKYGKVKRTDVVKNYAFAFVENKDEATNIINGA 65
Query: 98 NGMMVDGKPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKEC 140
+G + DG + V ++ ++ ++ F CG+GGHW+KEC
Sbjct: 66 SGTITDGFKIVVQISKNKQNLPEGDDLCF--ECGKGGHWAKEC 106
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T K++IG ++P S E + + KYGKV DVVKNY F
Sbjct: 11 TIKLYIGGIDPSWSNEKVTEILSKYGKVKRTDVVKNYAFA 50
>gi|322783676|gb|EFZ11014.1| hypothetical protein SINV_11528 [Solenopsis invicta]
Length = 402
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVD 103
TK+FVG L +N R E+R+LF+ +G V ECD++ YGFVH+ D IK L+
Sbjct: 15 TKIFVGRLPENCRNEELRQLFLRFGEVTECDVMNRYGFVHMAREEDAAAAIKALHNSNFK 74
Query: 104 GKPMKV 109
G + V
Sbjct: 75 GATINV 80
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+G + E +R LF ++G+V ECDV+ YGFV
Sbjct: 16 KIFVGRLPENCRNEELRQLFLRFGEVTECDVMNRYGFV 53
>gi|432921337|ref|XP_004080108.1| PREDICTED: RNA-binding protein 4B-like [Oryzias latipes]
Length = 344
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HME+ + AIK L+ ++ + +EA+ G N K+ V N+ E+R L
Sbjct: 41 HMEDRKAATKAIKNLHQHSLHGTAINVEAS---HGKNFGPVKIHVANVEKGC-DEELRAL 96
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVA----GFISSIL 119
F YGTV EC +V+N+ FVH+ + D IKEL+ K + V V+ F
Sbjct: 97 FEEYGTVSECAVVKNFAFVHMPNYDEAMDAIKELDNSDFQEKRIHVQVSKSRPKFEEYEE 156
Query: 120 SCLNVIFFIRCGRGGHWSKECP 141
RGG+W P
Sbjct: 157 YPPPPPPPHLPDRGGYWPPRYP 178
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+FVGNL E++ LF YG V EC I++N+ FVH+ D K IK L+ + G
Sbjct: 3 KIFVGNLPREATEEEIKALFEEYGAVTECAIIKNFAFVHMEDRKAATKAIKNLHQHSLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 TAINV 67
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 289 GTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
GT + +EA + F G KI + NV G EL R LFE+YG V EC VVKN+ FV
Sbjct: 62 GTAINVEASHGKNF---GPVKIHVANVEKGCDEEL-RALFEEYGTVSECAVVKNFAFV 115
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GN+ + E I+ LFE+YG V EC ++KN+ FV
Sbjct: 3 KIFVGNLPREATEEEIKALFEEYGAVTECAIIKNFAFV 40
>gi|218192579|gb|EEC75006.1| hypothetical protein OsI_11073 [Oryza sativa Indica Group]
Length = 294
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 14/121 (11%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMV 102
+T+++VG LS TR+ ++ LF YG + E ++ R+Y F+ D+ D ++ L+G V
Sbjct: 10 STRLYVGRLSSRTRSRDLEYLFGRYGRIREVELKRDYAFIEFSDTRDADEARYNLDGRDV 69
Query: 103 DGKPMKVVVAGFISSILSCLNVIFFIR-----------CGRGGHWSKECPRAGNFRSSGC 151
DG + V A + + + + R CG GHW+++C +AG++++ C
Sbjct: 70 DGSRILVEFAKGVPRGAAGGSREYMGRGPPPGTGRCFNCGIDGHWARDC-KAGDWKNK-C 127
Query: 152 Y 152
Y
Sbjct: 128 Y 128
>gi|363746805|ref|XP_003643805.1| PREDICTED: RNA-binding protein 4-like, partial [Gallus gallus]
Length = 123
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKLHG 62
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHHKLHGVCINVEAS---KNKSKASTKLHVGNISPTCTNLELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPD 89
F YG V+ECDIV++Y FVH++ +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAE 122
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 284 RYQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
++ G + +EA +S K+ +GN++P + +R FE+YG V+ECD+VK+Y
Sbjct: 57 HHKLHGVCINVEASKNKSKAST---KLHVGNISPTCTNLELRAKFEEYGPVIECDIVKDY 113
Query: 344 GFV 346
FV
Sbjct: 114 AFV 116
>gi|449451689|ref|XP_004143594.1| PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform
1 [Cucumis sativus]
gi|449451691|ref|XP_004143595.1| PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform
2 [Cucumis sativus]
gi|449507559|ref|XP_004163066.1| PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform
1 [Cucumis sativus]
gi|449507562|ref|XP_004163067.1| PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform
2 [Cucumis sativus]
Length = 309
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 24/124 (19%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVD 103
T+++VG LS TR+ ++ +LF YG V + D+ R+Y FV P D + LNG V
Sbjct: 11 TRLYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYSLNGRDVH 70
Query: 104 GKPMKVVVA-------GFISSILS--------CLNVIFFIRCGRGGHWSKECPRAGNFRS 148
G + V +A G L C N CG GHW+++C +AG++++
Sbjct: 71 GSRIIVEIAKGVPRGPGGSREYLGRGPPGTGRCFN------CGIDGHWARDC-KAGDWKN 123
Query: 149 SGCY 152
CY
Sbjct: 124 K-CY 126
>gi|410906707|ref|XP_003966833.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 347
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMVDG 104
K+FVGNL E++ LF YGTV EC I++NY FVH+D K IK L+ + G
Sbjct: 3 KIFVGNLPREANQEEIKALFTEYGTVTECAIIKNYAFVHMDDRKAATKAIKSLHLHKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 TAINV 67
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ + AIK L+ ++ + +EA+ G N K+ V N+ E+R L
Sbjct: 41 HMDDRKAATKAIKSLHLHKLHGTAINVEAS---HGKNPGAVKLHVANVEKGA-DDELRAL 96
Query: 65 FVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVVVA 112
F YG+V EC +V+N+ FVH+ +S + IK L+ GK + V ++
Sbjct: 97 FEEYGSVTECAVVKNFAFVHMSNSDEAMDAIKGLDNTEFQGKRIHVQIS 145
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
++ GT + +EA + + G K+ + NV G EL R LFE+YG V EC VVKN+
Sbjct: 58 HKLHGTAINVEASHG---KNPGAVKLHVANVEKGADDEL-RALFEEYGSVTECAVVKNFA 113
Query: 345 FV 346
FV
Sbjct: 114 FV 115
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GN+ + E I+ LF +YG V EC ++KNY FV
Sbjct: 3 KIFVGNLPREANQEEIKALFTEYGTVTECAIIKNYAFV 40
>gi|291244600|ref|XP_002742185.1| PREDICTED: alternative splicing factor SRp20/9G8, putative-like
[Saccoglossus kowalevskii]
Length = 275
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 18/114 (15%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN----YGFV-HIDSPDINKCIKELNG 99
++F+G LS TR ++ ++F YG + CD+ Y FV + D D IK NG
Sbjct: 7 AQLFIGRLSKQTRQRDLEDIFTAYGRLSRCDVKYGTGMAYAFVDYEDRRDAEDAIKYENG 66
Query: 100 MMVDGKPMKVVVA-----GFISSILSCLNVIFFIRCGRGGHWSKEC--PRAGNF 146
V G+ + V A GF+ + C +C R GHW+++C PR F
Sbjct: 67 REVCGQSIVVEWARGPRRGFVQAEDECY------KCHRSGHWARDCRDPRYAGF 114
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 12/115 (10%)
Query: 15 AIKELNGQIVNEKPLKIEAA---TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 71
AIK +NG++V + L++ A +S +K++V NL ++ +LFVPYG V
Sbjct: 286 AIKHMNGRMVEGRMLEVRLAGAPSSGSTKEMDMSKLYVCNLPLLLHEDKLHDLFVPYGQV 345
Query: 72 VECDIVRN--------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFISS 117
++R+ YGFV P I +LNG +++GK M+V VA SS
Sbjct: 346 TSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKMEVRVAAVSSS 400
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 9/82 (10%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCIK 95
T +FVGNL + + ++ ELF+P+G +V+ +V + YGFV P + IK
Sbjct: 229 TNLFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSDPRYAAEAIK 288
Query: 96 ELNGMMVDGKPMKVVVAGFISS 117
+NG MV+G+ ++V +AG SS
Sbjct: 289 HMNGRMVEGRMLEVRLAGAPSS 310
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 26/128 (20%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIE-AATSRKGPNTPT----------------TKVFVGNL 52
+ AI +LNG ++ K +++ AA S G NT + V+V NL
Sbjct: 371 QHAAHAIFQLNGHLIEGKKMEVRVAAVSSSGSNTSVQAISETDHQLTKEVDMSNVYVQNL 430
Query: 53 SDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVD 103
++ LF+PYG V + + YGFV P D + ELNG +V+
Sbjct: 431 PLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVIELNGCLVE 490
Query: 104 GKPMKVVV 111
G+ + V V
Sbjct: 491 GRKILVRV 498
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 15 AIKELNGQIVNEKPLKIEA----------ATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
A+ ELNG +V + + + A +R + ++V N+ + ++ EL
Sbjct: 480 AVIELNGCLVEGRKILVRVRPPSSPVESHANNRTLKEIDMSNLYVCNIPSSMNKAKLVEL 539
Query: 65 FVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVVVAGF 114
F+P+G + +V + YGFV DS + + +NG +++G+ + V VAG
Sbjct: 540 FLPFGRITHAMVVEQSNNSSKGYGFVKFADSHCAAEAVAMMNGALIEGETISVRVAGL 597
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 17/117 (14%)
Query: 28 PLKIEAATSRKGPNTP--------TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-- 77
P + + AT + P TP T ++VG L ++ ELF+P G + + +V
Sbjct: 789 PAESDVATFARTPQTPGNEHRQIDMTNLYVGYLPPYVTTDKLIELFLPCGQITQAKVVVD 848
Query: 78 ------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFF 127
+ +GFV D+ I +NG +DG + V AG S ++ F+
Sbjct: 849 KFTGVSKGFGFVRFADAYSAATAITHMNGYPLDGHMLAVRTAGVQPSDMASYMAHFY 905
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFV-HIDSPDINKCIKELN 98
P +++V NL A ++ LF+P+G + + Y FV + D K +K ++
Sbjct: 618 PEINNCRLYVTNLPQTMSADKLVSLFMPFGQIDRVVMYAEYSFVLYADINSAAKALKHMD 677
Query: 99 GMMVDGKPMKVVVAG 113
G +++GK ++VV G
Sbjct: 678 GYLIEGK--RLVVKG 690
>gi|307179084|gb|EFN67556.1| RNA-binding protein 14 [Camponotus floridanus]
Length = 435
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVD 103
TK+FVG L +N R E+R+LF+ +G V ECD++ YGFVH+ D IK L+
Sbjct: 29 TKIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFVHMAREEDAAAAIKALHNSNFK 88
Query: 104 GKPMKV 109
G + V
Sbjct: 89 GATINV 94
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+G + + +R LF ++G+V ECDV+ YGFV
Sbjct: 30 KIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFV 67
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNG-------------QIVNEKPLKI----EAATSRKGPNTPTTKV 47
+ EN E+ A++ LNG Q +E+ L++ E +S G +
Sbjct: 271 NFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNL 330
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
+V NL D ++RELF +GT+ C ++R+ GFV + + ++ + E+NG
Sbjct: 331 YVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNG 390
Query: 100 MMVDGKPMKVVVA 112
MV GKP+ V +A
Sbjct: 391 KMVGGKPLYVALA 403
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 59
+ ++ + AI++LNG+++N+K P + T V+V NLS+ T
Sbjct: 180 QFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDD 239
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGK 105
E++ F YG++ ++R+ +GFV+ ++P D + ++ LNG D K
Sbjct: 240 ELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDK 293
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIE-AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFV 66
N ++ A+++LN +N K ++I ++ + +FV NL + + E F
Sbjct: 96 NTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFS 155
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFI 115
GT+V C + R YGFV D+ D K I++LNG +++ K ++ V F+
Sbjct: 156 GCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDK--QIFVGPFL 210
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 13/112 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKP----LKIEAATSRKGPNTPT-TKVFVGNLSDNTRAP 59
+N+E + AIK LNG ++N+K L I + +P T V+V NLS+
Sbjct: 169 QFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDE 228
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVD 103
++++LF PYGT+ ++++ +GFV+ +PD ++ LNG ++
Sbjct: 229 DLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTIN 280
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 15/119 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVREL 64
N ++ A++ LN +N KP++I S++ P+ + VF+ NL + + +
Sbjct: 85 NAQDASNAMELLNFTPLNGKPIRI--MFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDT 142
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
F +GTV+ C + + YGFV D+ + IK LNGM+++ K +V V FI
Sbjct: 143 FAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDK--QVYVGLFI 199
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 26/134 (19%)
Query: 5 HMENDEEGRTAIKELNGQIVN------------------EKPLKIEAATSRKGPNTPTTK 46
+ +N + A++ LNG +N E KIE +
Sbjct: 260 NFQNPDSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGAN 319
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELN 98
+++ NL D+ ++++LF +GT+ C ++ + GFV +P + +K + E+N
Sbjct: 320 LYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMN 379
Query: 99 GMMVDGKPMKVVVA 112
G ++ KP+ V VA
Sbjct: 380 GKLIGRKPLYVAVA 393
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNG-------------QIVNEKPLKI----EAATSRKGPNTPTTKV 47
+ EN E+ A++ LNG Q +E+ L++ E +S G +
Sbjct: 271 NFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNL 330
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
+V NL D ++RELF +GT+ C ++R+ GFV + + ++ + E+NG
Sbjct: 331 YVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNG 390
Query: 100 MMVDGKPMKVVVA 112
MV GKP+ V +A
Sbjct: 391 KMVGGKPLYVALA 403
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 59
+ ++ + AI++LNG+++N+K P + T V+V NLS+ T
Sbjct: 180 QFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDD 239
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGK 105
E++ F YG++ ++R+ +GFV+ ++P D + ++ LNG D K
Sbjct: 240 ELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDK 293
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIE-AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFV 66
N ++ A+++LN +N K ++I ++ + +FV NL + + E F
Sbjct: 96 NTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFS 155
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFI 115
GT+V C + R YGFV D+ D K I++LNG +++ K ++ V F+
Sbjct: 156 GCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDK--QIFVGPFL 210
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNG-------------QIVNEKPLKI----EAATSRKGPNTPTTKV 47
+ EN E+ A++ LNG Q +E+ L++ E +S G +
Sbjct: 266 NFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDAGNKFDGLNL 325
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
+V NL D ++RELF +GT+ C ++R+ GFV + + ++ + E+NG
Sbjct: 326 YVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNG 385
Query: 100 MMVDGKPMKVVVA 112
MV GKP+ V +A
Sbjct: 386 KMVGGKPLYVALA 398
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 59
+ ++ + AI++LNG+++N+K P + T V+V NLS+ T
Sbjct: 175 QFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEVTTDD 234
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGK 105
E++ F YG++ ++R+ +GFV+ ++P D + ++ LNG D K
Sbjct: 235 ELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDK 288
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIE-AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFV 66
N E+ A+++LN +N K ++I ++ + +FV NL + + E F
Sbjct: 91 NTEDAEKAMQKLNYSTLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHETFS 150
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFI 115
GT+V C + R YGFV D+ D K I++LNG +++ K ++ V F+
Sbjct: 151 GCGTIVSCKVAADHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDK--QIFVGPFL 205
>gi|145515315|ref|XP_001443557.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124410946|emb|CAK76160.1| unnamed protein product [Paramecium tetraurelia]
Length = 186
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 44 TTKVFVGNLSDN--TRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGM 100
+ ++FV S + T +VRE+F YG++ E +Y F+ + D K + E+NG
Sbjct: 6 SNQLFVAGYSRSKVTDERDVREIFRKYGSLKEVAYKGSYSFITFSNEDEAKEALTEMNGT 65
Query: 101 MVDGKPMKVVVAGFISSILSCLNVIFF-IRCGRGGHWSKECPRAGNFRSSGCYCKSK 156
+G+ +KV V + N +CGRGGHW+++CP+ + S Y SK
Sbjct: 66 THNGQKLKVDVVDNRKGRRTGPNESDECFKCGRGGHWARDCPKGRSPHRSRRYSNSK 122
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 13/111 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 59
E DE ++AI +LNG ++N+K P + N + V+V NLSD
Sbjct: 169 QFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDD 228
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMV 102
E++E+F YGT+ ++R+ +GFV+ ++ D + ++ELN +V
Sbjct: 229 ELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNDGVV 279
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 17/123 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPE 60
+ N + A++ LN +N KP++I + +SRK + T +F+ NL +
Sbjct: 82 NYNNQGDAARALELLNFTPINGKPIRIMYSNRDPSSRK---SGTGNIFIKNLDKSIDNKA 138
Query: 61 VRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
+ + F +G ++ C I R YGFV + + I +LNGM+++ K KV V
Sbjct: 139 LYDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDK--KVFVG 196
Query: 113 GFI 115
F+
Sbjct: 197 PFV 199
>gi|350402764|ref|XP_003486594.1| PREDICTED: hypothetical protein LOC100743736 isoform 2 [Bombus
impatiens]
Length = 382
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVD 103
TK+FVG L +N R E+R+LF+ +G V ECD++ YGFVH+ D IK L+
Sbjct: 16 TKIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFVHMAREEDAAAAIKALHNSNFK 75
Query: 104 GKPMKV 109
G + V
Sbjct: 76 GATINV 81
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+G + + +R LF ++G+V ECDV+ YGFV
Sbjct: 17 KIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFV 54
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 13/112 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKP----LKIEAATSRKGPNTPT-TKVFVGNLSDNTRAP 59
+N+E + AIK LNG ++N+K L I + +P T V+V NLS+
Sbjct: 169 QFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDE 228
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVD 103
++++LF PYGT+ ++++ +GFV+ +PD ++ LNG ++
Sbjct: 229 DLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTIN 280
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 15/119 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVREL 64
N ++ A++ LN +N KP++I S++ P+ + VF+ NL + + +
Sbjct: 85 NAQDASNAMELLNFTPLNGKPIRI--MFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDT 142
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
F +GTV+ C + + YGFV D+ + IK LNGM+++ K +V V FI
Sbjct: 143 FAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDK--QVYVGLFI 199
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 26/134 (19%)
Query: 5 HMENDEEGRTAIKELNGQIVN------------------EKPLKIEAATSRKGPNTPTTK 46
+ +N + A++ LNG +N E KIE +
Sbjct: 260 NFQNPDSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGAN 319
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELN 98
+++ NL D+ ++++LF +GT+ C ++ + GFV +P + +K + E+N
Sbjct: 320 LYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMN 379
Query: 99 GMMVDGKPMKVVVA 112
G ++ KP+ V VA
Sbjct: 380 GKLIGRKPLYVAVA 393
>gi|170596723|ref|XP_001902872.1| RNA-binding protein lark [Brugia malayi]
gi|158589182|gb|EDP28280.1| RNA-binding protein lark, putative [Brugia malayi]
Length = 283
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+FVG L D + +R+LF + V ECD++++Y FVH+ + D I++L+G +++G
Sbjct: 3 KLFVGGLPDGVDSMRLRQLFSQFVVVNECDVIKDYAFVHVPEESDARTAIEKLDGYILEG 62
Query: 105 KPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECP 141
K + + + ++ + RCG H + +CP
Sbjct: 63 KAINIRRSTSKLRKEPGMDKRCY-RCGAVDHKTPQCP 98
Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+G + G +R LF ++ V ECDV+K+Y FV
Sbjct: 3 KLFVGGLPDGVDSMRLRQLFSQFVVVNECDVIKDYAFV 40
>gi|307193686|gb|EFN76369.1| RNA-binding protein 14 [Harpegnathos saltator]
Length = 361
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVD 103
TK+FVG L +N R E+R+LF+ +G V ECD++ YGFVH+ D IK L+
Sbjct: 10 TKIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFVHMAREEDAAAAIKALHNSNFK 69
Query: 104 GKPMKV 109
G + V
Sbjct: 70 GATINV 75
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+G + + +R LF ++G+V ECDV+ YGFV
Sbjct: 11 KIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFV 48
>gi|302695537|ref|XP_003037447.1| hypothetical protein SCHCODRAFT_104251 [Schizophyllum commune H4-8]
gi|300111144|gb|EFJ02545.1| hypothetical protein SCHCODRAFT_104251, partial [Schizophyllum
commune H4-8]
Length = 490
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 31 IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD- 89
++A +R G P KV++G L ++TR +++ F G +V ++ YGFV D+P+
Sbjct: 64 VKAENTRLGKPNPN-KVYIGGLPESTRTEDLKNCFGKLGAIVNIELKIGYGFVEFDNPEA 122
Query: 90 -INKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECP 141
I K G + K ++V ++ S ++ RCG GHW++ECP
Sbjct: 123 AIESVNKYHEGYFMGNK-IRVEISKGGSKSRHAMDPGSCFRCGVPGHWARECP 174
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 35/138 (25%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKP---------------LKI-------EAATSRKGPNT 42
+ EN ++ TA++ LNG+ ++K LK+ EAA +G N
Sbjct: 249 NFENADDAATAVEALNGKKFDDKEWFVGKAQKKNERENELKVRFEQSMKEAADKFQGAN- 307
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCI 94
+++ NL D+ +++LF P+GT+ C ++R+ GFV +P + +K +
Sbjct: 308 ----LYIKNLDDSIGDDRLKQLFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASKAL 363
Query: 95 KELNGMMVDGKPMKVVVA 112
E+NG MV KP+ V +A
Sbjct: 364 MEMNGKMVVSKPLYVALA 381
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAP 59
+N+E + AI++LNG ++N+K + + ++ + K V+V NLS+ T
Sbjct: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAIDKTRFNNVYVKNLSETTTEE 217
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 105
++++ F YGT+ ++R+ +GFV+ + + D ++ LNG D K
Sbjct: 218 DLKKAFGEYGTITSAVVMRDGDGKTKCFGFVNFENADDAATAVEALNGKKFDDK 271
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFV 66
++ A+ LN +N P++I S + P+ + + +F+ NL + + F
Sbjct: 76 QDAARALDMLNFTPLNGSPIRI--MYSHRDPSVRKSGSGNIFIKNLDKGIDHKALHDTFS 133
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+G ++ C + + YGFV D+ + K I++LNGM+++ K + V
Sbjct: 134 AFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 39 GPNTP--TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP 88
G N P TT ++VG+L N + +LF G VV + R+ YG+V+ SP
Sbjct: 16 GANAPYVTTSLYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSP 75
Query: 89 -DINKCIKELNGMMVDGKPMKVV 110
D + + LN ++G P++++
Sbjct: 76 QDAARALDMLNFTPLNGSPIRIM 98
>gi|380024820|ref|XP_003696188.1| PREDICTED: RNA-binding protein 4.1-like, partial [Apis florea]
Length = 385
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVD 103
TK+FVG L +N R E+R+LF+ +G V ECD++ YGFVH+ D IK L+
Sbjct: 10 TKIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFVHMAREEDAAAAIKALHNSNFK 69
Query: 104 GKPMKV 109
G + V
Sbjct: 70 GATINV 75
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+G + + +R LF ++G+V ECDV+ YGFV
Sbjct: 11 KIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFV 48
>gi|393912275|gb|EFO22750.2| hypothetical protein LOAG_05733 [Loa loa]
Length = 289
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+FVG L D + +R+LF + V ECD++++Y FVH+ + D I++L+G +++G
Sbjct: 3 KLFVGGLPDGVDSMRLRQLFSQFVVVNECDVIKDYAFVHVPEESDARTAIEKLDGYILEG 62
Query: 105 KPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECP 141
K + + + ++ + RCG H + +CP
Sbjct: 63 KAINIRRSTSKLRKEPGMDKRCY-RCGAVDHKTPQCP 98
Score = 37.7 bits (86), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+G + G +R LF ++ V ECDV+K+Y FV
Sbjct: 3 KLFVGGLPDGVDSMRLRQLFSQFVVVNECDVIKDYAFV 40
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 12/113 (10%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK----GPNTPTTKVFVGNLSDNTRAPE 60
H E+ + AI ++NG I+N++ + + S K T V+V NLS++ E
Sbjct: 142 HYESQDSADKAIMKVNGMIINDQKVFVGPFKSSKERGQTQELKYTNVYVKNLSEDVNEEE 201
Query: 61 VRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGK 105
+R+L VPYG + I+ + +GF + ++PD K C++ NG + GK
Sbjct: 202 LRDLLVPYGKITNLTIMSDEKSKSKGFGFANFETPDEAKNCVEAENGKLFHGK 254
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 15/121 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVREL 64
N + A+ LN +V K +I S++ P+ + +F+ NL + + +
Sbjct: 58 NPADAERALDTLNNTLVKGKACRI--MWSQRDPSLRKSGVGNIFIKNLDKSVDHKALFDT 115
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C +V + +GFVH +S D +K I ++NGM+++ + KV V F S
Sbjct: 116 FSAFGNILSCKVVTDETNVSKGFGFVHYESQDSADKAIMKVNGMIINDQ--KVFVGPFKS 173
Query: 117 S 117
S
Sbjct: 174 S 174
>gi|351715343|gb|EHB18262.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 208
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H E++ A L+ ++ + +EA+ K +TK+ VGN+S E+R
Sbjct: 41 HAEDETAAEDAKHNLHHYKLHGVNINVEAS---KNKGKASTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA 112
YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++
Sbjct: 98 REEYGPVIECDIVKDYAFVHMEPAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA G +S K+ +GN++P + + +R E+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKGKAST---KLHVGNISPTCTNKELRAKREEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 86
K+F+GNL E+R G V ECDI++NY F+H +
Sbjct: 3 KLFIGNLPQEATEQEIRSRSEQCGQVRECDIIKNYAFLHAE 43
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR E+ G+V ECD++KNY F+
Sbjct: 3 KLFIGNLPQEATEQEIRSRSEQCGQVRECDIIKNYAFL 40
>gi|90399074|emb|CAJ86296.1| H0124B04.13 [Oryza sativa Indica Group]
Length = 913
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 17/121 (14%)
Query: 15 AIKELNGQIVNEKPLKIEAA--------TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFV 66
AIK +NG++V + L++ A + + T K++V NLS + + LF+
Sbjct: 266 AIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFL 325
Query: 67 PYGTVVECDIVRN--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVAGFISS 117
P+G V + ++ YGFV SP + + LNG +VDG+ ++V V+G S+
Sbjct: 326 PFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPST 385
Query: 118 I 118
+
Sbjct: 386 L 386
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCIK 95
T ++VGNL + + ++ ELF+P+G +V +V + YGFV P ++ IK
Sbjct: 209 TNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIK 268
Query: 96 ELNGMMVDGKPMKVVVAGFISS 117
+NG +V+G+ ++V VAGF SS
Sbjct: 269 RMNGRLVEGRALEVRVAGFPSS 290
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 24/124 (19%)
Query: 15 AIKELNGQIVNEKPLKIEAA---------------TSRKGPNTPTTKVFVGNLSDNTRAP 59
A+ LNG++V+ + +++ + T+R + ++V N+ +
Sbjct: 361 AVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTK 420
Query: 60 EVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVV 110
++ ELF+P+G + +V + YGF+ DS K I +NG +V G+ + V
Sbjct: 421 KLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVR 480
Query: 111 VAGF 114
VAG
Sbjct: 481 VAGL 484
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAA---------TSRKGPNTPTTKVFVGNLSDNTRA 58
+ E AI +NG +V + + + A + + +++++ NL + A
Sbjct: 456 DSESATKAIAAMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTA 515
Query: 59 PEVRELFVPYGTVVECDIVRNYGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
++ LF P+G + + + Y V + D+P K ++ ++G MV+GK + V
Sbjct: 516 DKMVNLFAPFGQITKVLMNLEYSLVWYADAPSAIKAVQHMDGYMVEGKRLVV 567
>gi|340728027|ref|XP_003402334.1| PREDICTED: hypothetical protein LOC100650942 [Bombus terrestris]
gi|350402761|ref|XP_003486593.1| PREDICTED: hypothetical protein LOC100743736 isoform 1 [Bombus
impatiens]
Length = 416
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVD 103
TK+FVG L +N R E+R+LF+ +G V ECD++ YGFVH+ D IK L+
Sbjct: 10 TKIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFVHMAREEDAAAAIKALHNSNFK 69
Query: 104 GKPMKV 109
G + V
Sbjct: 70 GATINV 75
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+G + + +R LF ++G+V ECDV+ YGFV
Sbjct: 11 KIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFV 48
>gi|66516797|ref|XP_397567.2| PREDICTED: hypothetical protein LOC409486 [Apis mellifera]
Length = 416
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVD 103
TK+FVG L +N R E+R+LF+ +G V ECD++ YGFVH+ D IK L+
Sbjct: 10 TKIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFVHMAREEDAAAAIKALHNSNFK 69
Query: 104 GKPMKV 109
G + V
Sbjct: 70 GATINV 75
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+G + + +R LF ++G+V ECDV+ YGFV
Sbjct: 11 KIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFV 48
>gi|357129728|ref|XP_003566513.1| PREDICTED: uncharacterized protein LOC100839501 [Brachypodium
distachyon]
Length = 292
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
TK++VG LS TR +V LF YG V ++ +YGFV P D + EL+G
Sbjct: 38 NTKLYVGRLSTRTRTQDVEYLFGRYGRVRNVELKHDYGFVEFSDPRDADDARYELDGRDF 97
Query: 103 DGKPMKVVVA-GFISSILSCLNVIFF---------IRCGRGGHWSKECPRAGNFRSSGCY 152
DG + V A G N + CG GHW+++C +AGN+++ CY
Sbjct: 98 DGSRIIVEFAKGTPRGPGGSFNYVGRSLPPGSGRCFNCGIEGHWARDC-KAGNWKNK-CY 155
>gi|312077471|ref|XP_003141318.1| hypothetical protein LOAG_05733 [Loa loa]
Length = 284
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+FVG L D + +R+LF + V ECD++++Y FVH+ + D I++L+G +++G
Sbjct: 3 KLFVGGLPDGVDSMRLRQLFSQFVVVNECDVIKDYAFVHVPEESDARTAIEKLDGYILEG 62
Query: 105 KPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECP 141
K + + + ++ + RCG H + +CP
Sbjct: 63 KAINIRRSTSKLRKEPGMDKRCY-RCGAVDHKTPQCP 98
Score = 37.7 bits (86), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+G + G +R LF ++ V ECDV+K+Y FV
Sbjct: 3 KLFVGGLPDGVDSMRLRQLFSQFVVVNECDVIKDYAFV 40
>gi|383852950|ref|XP_003701988.1| PREDICTED: uncharacterized protein LOC100875854 [Megachile
rotundata]
Length = 416
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVD 103
TK+FVG L +N R E+R+LF+ +G V ECD++ YGFVH+ D IK L+
Sbjct: 10 TKIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFVHMAREEDAAAAIKALHNSNFK 69
Query: 104 GKPMKV 109
G + V
Sbjct: 70 GATINV 75
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+G + + +R LF ++G+V ECDV+ YGFV
Sbjct: 11 KIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFV 48
>gi|218195846|gb|EEC78273.1| hypothetical protein OsI_17967 [Oryza sativa Indica Group]
Length = 1001
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 17/121 (14%)
Query: 15 AIKELNGQIVNEKPLKIEAA--------TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFV 66
AIK +NG++V + L++ A + + T K++V NLS + + LF+
Sbjct: 354 AIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFL 413
Query: 67 PYGTVVECDIVRN--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVAGFISS 117
P+G V + ++ YGFV SP + + LNG +VDG+ ++V V+G S+
Sbjct: 414 PFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPST 473
Query: 118 I 118
+
Sbjct: 474 L 474
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCIK 95
T ++VGNL + + ++ ELF+P+G +V +V + YGFV P ++ IK
Sbjct: 297 TNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIK 356
Query: 96 ELNGMMVDGKPMKVVVAGFISS 117
+NG +V+G+ ++V VAGF SS
Sbjct: 357 RMNGRLVEGRALEVRVAGFPSS 378
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 24/124 (19%)
Query: 15 AIKELNGQIVNEKPLKIEAA---------------TSRKGPNTPTTKVFVGNLSDNTRAP 59
A+ LNG++V+ + +++ + T+R + ++V N+ +
Sbjct: 449 AVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTK 508
Query: 60 EVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVV 110
++ ELF+P+G + +V + YGF+ DS K I +NG +V G+ + V
Sbjct: 509 KLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVR 568
Query: 111 VAGF 114
VAG
Sbjct: 569 VAGL 572
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAA---------TSRKGPNTPTTKVFVGNLSDNTRA 58
+ E AI +NG +V + + + A + + +++++ NL + A
Sbjct: 544 DSESATKAIAAMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTA 603
Query: 59 PEVRELFVPYGTVVECDIVRNYGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
++ LF P+G + + + Y V + D+P K ++ ++G MV+GK + V
Sbjct: 604 DKMVNLFAPFGQITKVLMNLEYSLVWYADAPSAIKAVQHMDGYMVEGKRLVV 655
>gi|17946488|gb|AAL49276.1| RE73487p [Drosophila melanogaster]
Length = 384
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMV 102
T KVFVG+L + E+R LF YG+VVECD++ FVH+++ D+ + I LNG +
Sbjct: 4 TAKVFVGSLPR-CKPEELRRLFTNYGSVVECDVMNRCAFVHLENTDMAEAAIAALNGTIF 62
Query: 103 DGKPMKVVVAG 113
G+P+ VV AG
Sbjct: 63 KGQPI-VVEAG 72
>gi|222629794|gb|EEE61926.1| hypothetical protein OsJ_16667 [Oryza sativa Japonica Group]
Length = 1011
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 17/121 (14%)
Query: 15 AIKELNGQIVNEKPLKIEAA--------TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFV 66
AIK +NG++V + L++ A + + T K++V NLS + + LF+
Sbjct: 353 AIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFL 412
Query: 67 PYGTVVECDIVRN--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVAGFISS 117
P+G V + ++ YGFV SP + + LNG +VDG+ ++V V+G S+
Sbjct: 413 PFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPST 472
Query: 118 I 118
+
Sbjct: 473 L 473
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCIK 95
T ++VGNL + + ++ ELF+P+G +V +V + YGFV P ++ IK
Sbjct: 296 TNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIK 355
Query: 96 ELNGMMVDGKPMKVVVAGFISS 117
+NG +V+G+ ++V VAGF SS
Sbjct: 356 RMNGRLVEGRALEVRVAGFPSS 377
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAA---------TSRKGPNTPTTKVFVGNLSDNTRA 58
+ E AI +NG +V + + + A + + +++++ NL + A
Sbjct: 554 DSESATKAIAAMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTA 613
Query: 59 PEVRELFVPYGTVVECDIVRNYGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
++ LF P+G + + + Y V + D+P K ++ ++G MV+GK + V
Sbjct: 614 DKMVNLFAPFGQITKVLMNLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVV 665
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 34 ATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHI 85
+T+R + ++V N+ + ++ ELF+P+G + +V + YGF+
Sbjct: 493 STTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKF 552
Query: 86 -DSPDINKCIKELNGMMVDGKPMKVVVAGF 114
DS K I +NG +V G+ + V VAG
Sbjct: 553 TDSESATKAIAAMNGALVGGEMIIVRVAGL 582
>gi|413944557|gb|AFW77206.1| hypothetical protein ZEAMMB73_752942 [Zea mays]
Length = 330
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 37 RKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIK 95
R G + TK++VG +S TR ++ ++F YG + D+ R +GFV P D +
Sbjct: 82 RHGRHGSNTKLYVGQISPYTRTQDLEDIFRKYGRLRNVDMKREFGFVEFTDPRDADDARH 141
Query: 96 ELNGMMVDGKPMKVVVA-----GFISSILSCLNVIFFIR---CGRGGHWSKECPRAGNFR 147
+L+G + DG + V A G L F R CG GHW ++C +AG++R
Sbjct: 142 DLDGRIFDGSHLIVEFARGAQRGPGGVPLDGKGPSFPGRCYNCGMDGHWVRDC-KAGDWR 200
Query: 148 SSGCYC 153
C
Sbjct: 201 DKCFRC 206
>gi|442621790|ref|NP_001263093.1| CG7903, isoform B [Drosophila melanogaster]
gi|440218048|gb|AGB96472.1| CG7903, isoform B [Drosophila melanogaster]
Length = 382
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMV 102
T KVFVG+L + E+R LF YG+VVECD++ FVH+++ D+ + I LNG +
Sbjct: 4 TAKVFVGSLPR-CKPEELRRLFTNYGSVVECDVMNRCAFVHLENTDMAEAAIAALNGTIF 62
Query: 103 DGKPMKVVVAG 113
G+P+ VV AG
Sbjct: 63 KGQPI-VVEAG 72
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 25/151 (16%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKP-----------------LKIEAATSRKGPNTPTTKV 47
+ E+ ++ A++ LNG+ +EK K E + +
Sbjct: 249 NFEHADDAAKAVEALNGKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNL 308
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNG 99
++ NL D ++RE+F YGT+V C ++R+ GFV SPD + + E+NG
Sbjct: 309 YLKNLDDTIDDEKLREIFSEYGTIVSCKVMRDPQGQSRGSGFVAFSSPDEATRAVTEMNG 368
Query: 100 MMVDGKPMKVVVAGFISSILSCLNVIFFIRC 130
MV KP+ V +A + L F R
Sbjct: 369 KMVGSKPLYVALAQRKEERRNRLQAAFAQRT 399
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 59
E +E +TAI+++NG ++N+K P + G + V+V NL+D+T
Sbjct: 158 QFEQEESAQTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGVVSKFNNVYVKNLADSTTDD 217
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 105
E++++F YG + ++R+ +GFV+ + + D K ++ LNG D K
Sbjct: 218 ELKKVFEAYGPISSAVVMRDNEGKSKCFGFVNFEHADDAAKAVEALNGKKFDEK 271
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 22/137 (16%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVREL 64
N ++ A++ LN VN KP++I S + P+ + T +F+ NL + + +
Sbjct: 74 NAQDATRALELLNFNAVNGKPIRI--MFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDT 131
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI- 115
F +GT++ C + + YGFV + + I+++NGM+++ K +V V F+
Sbjct: 132 FAAFGTILSCKVATDPSGQSKGYGFVQFEQEESAQTAIEKVNGMLLNDK--QVFVGPFVR 189
Query: 116 ------SSILSCLNVIF 126
S ++S N ++
Sbjct: 190 RQERDQSGVVSKFNNVY 206
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAP 59
E +E + AIK LNG ++N+KP+ + + T VFV NLS++T
Sbjct: 180 QYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKE 239
Query: 60 EVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGK 105
++ ++F YG++ ++ R +GF++ ++PD ++ ++ELNG ++ K
Sbjct: 240 DLLKVFGEYGSITSAVVMIGMDGKSRCFGFINFENPDAASRAVQELNGKKINDK 293
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAP 59
+ N + A++ LN ++N KP+++ + ++ R G + +F+ NL
Sbjct: 93 NFSNPLDAARALEVLNFAVLNNKPIRVMYSNRDPSSRRSG----SANIFIKNLDKTIDNK 148
Query: 60 EVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 109
+ E F +GT++ C + + +GFV + + + IK LNGM+++ KP+ V
Sbjct: 149 TLHETFSSFGTILSCKVAMDEAGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFV 206
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 35/138 (25%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI----------------------EAATSRKGPNT 42
+ EN + A++ELNG+ +N+K + +AA +G N
Sbjct: 271 NFENPDAASRAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLN- 329
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCI 94
+++ NL D+ ++RELF +G + ++R+ GFV + + ++ +
Sbjct: 330 ----LYLKNLDDSIGDDQLRELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQAL 385
Query: 95 KELNGMMVDGKPMKVVVA 112
E+NG M+ GKP+ V A
Sbjct: 386 TEMNGKMISGKPLYVAFA 403
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 93
PTT ++VG+L + ++ ELF G VV + R+ Y +V+ +P D +
Sbjct: 44 PTTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARA 103
Query: 94 IKELNGMMVDGKPMKVV 110
++ LN +++ KP++V+
Sbjct: 104 LEVLNFAVLNNKPIRVM 120
>gi|24651234|ref|NP_651755.2| CG7903, isoform A [Drosophila melanogaster]
gi|23172639|gb|AAF56982.2| CG7903, isoform A [Drosophila melanogaster]
Length = 384
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMV 102
T KVFVG+L + E+R LF YG+VVECD++ FVH+++ D+ + I LNG +
Sbjct: 4 TAKVFVGSLPR-CKPEELRRLFTNYGSVVECDVMNRCAFVHLENTDMAEAAIAALNGTIF 62
Query: 103 DGKPMKVVVAG 113
G+P+ VV AG
Sbjct: 63 KGQPI-VVEAG 72
>gi|168029395|ref|XP_001767211.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681466|gb|EDQ67892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 192
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 29/137 (21%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-PNTPT-------------------T 45
M E+ I+ L+G V +PLK+ S++ P+ P
Sbjct: 48 MATQEDAENVIERLDGHDVGGRPLKVSFPQSKQNRPSFPRGEGYQRSERAPRPAARDDPN 107
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFV-HIDSPDINKCIKE 96
KVFVGNLS ++ELF YG VV+ +V R +GFV + D +++ I
Sbjct: 108 KVFVGNLSWGVDNGALQELFSDYGKVVDARVVYDRESGRSRGFGFVTYSDVSEVDAAIDS 167
Query: 97 LNGMMVDGKPMKVVVAG 113
L+G DG+ ++V +AG
Sbjct: 168 LDGAEFDGRELRVNLAG 184
>gi|115461392|ref|NP_001054296.1| Os04g0682400 [Oryza sativa Japonica Group]
gi|113565867|dbj|BAF16210.1| Os04g0682400 [Oryza sativa Japonica Group]
Length = 1008
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 17/121 (14%)
Query: 15 AIKELNGQIVNEKPLKI--------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFV 66
AIK +NG++V LK+ E + + T K++V NLS + + LF+
Sbjct: 350 AIKRMNGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFL 409
Query: 67 PYGTVVECDIVRN--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVAGFISS 117
P+G V + ++ YGFV SP + + LNG +VDG+ ++V V+G S+
Sbjct: 410 PFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPST 469
Query: 118 I 118
+
Sbjct: 470 L 470
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 9/82 (10%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCIK 95
T ++VGNL + + ++ ELF+P+G +V +V + YGFV P ++ IK
Sbjct: 293 TNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIK 352
Query: 96 ELNGMMVDGKPMKVVVAGFISS 117
+NG +V+G +KV V GF SS
Sbjct: 353 RMNGRLVEGTALKVRVTGFPSS 374
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAA---------TSRKGPNTPTTKVFVGNLSDNTRA 58
+ E AI +NG +V + + + A + + +++++ NL + A
Sbjct: 551 DSESATKAIAAMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTA 610
Query: 59 PEVRELFVPYGTVVECDIVRNYGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
++ LF P+G + + + Y V + D+P K ++ ++G MV+GK + V
Sbjct: 611 DKMVNLFAPFGQITKVLMNLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVV 662
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 34 ATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHI 85
+T+R + ++V N+ + ++ ELF+P+G + +V + YGF+
Sbjct: 490 STTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKF 549
Query: 86 -DSPDINKCIKELNGMMVDGKPMKVVVAGF 114
DS K I +NG +V G+ + V VAG
Sbjct: 550 TDSESATKAIAAMNGALVGGEMIIVRVAGL 579
>gi|195341381|ref|XP_002037288.1| GM12198 [Drosophila sechellia]
gi|194131404|gb|EDW53447.1| GM12198 [Drosophila sechellia]
Length = 383
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMV 102
T KVFVG+L + E+R LF YG+VVECD++ FVH+++ D+ + I LNG +
Sbjct: 4 TAKVFVGSLPR-CKPEELRRLFTNYGSVVECDVMNRCAFVHLENTDMAEAAIAALNGTIF 62
Query: 103 DGKPMKVVVAG 113
G+P+ VV AG
Sbjct: 63 KGQPI-VVEAG 72
>gi|159164093|pdb|2DGT|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Rna- Binding Protein 30
Length = 92
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMV 102
+TK+ VGN+S E+R F YG V+ECDIV++Y FVH++ + D + I+ L+
Sbjct: 10 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 69
Query: 103 DGKPMKVVVA 112
GK M V ++
Sbjct: 70 QGKRMHVQLS 79
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 30/41 (73%)
Query: 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+ K+ +GN++P + + +R FE+YG V+ECD+VK+Y FV
Sbjct: 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFV 49
>gi|255568494|ref|XP_002525221.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223535518|gb|EEF37187.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 305
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 22/123 (17%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG+L+ TR+ ++ LF YG V + D+ R+Y FV P D + L+G +
Sbjct: 10 NTRLYVGHLASRTRSRDLEYLFSKYGRVRDVDMKRDYAFVEFSDPRDADDARYHLDGKDL 69
Query: 103 DGKPMKVVVA-------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSS 149
DG + V A G C N CG GHW+++C +AG++++
Sbjct: 70 DGSRIIVEFAKGVPRGSREYLGRGPPPGSGRCFN------CGIDGHWARDC-KAGDWKNK 122
Query: 150 GCY 152
CY
Sbjct: 123 -CY 124
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 13/112 (11%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEV 61
E +E + AIK LNG ++N+KP+ + + T VFV NLS++T ++
Sbjct: 176 EKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKEDL 235
Query: 62 RELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGK 105
++F YG + ++ R +GF++ ++PD ++ ++ELNG ++ K
Sbjct: 236 LKIFGEYGNITSAVVMIGMDGKSRCFGFINFENPDAASRAVQELNGKKINDK 287
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 35/138 (25%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI----------------------EAATSRKGPNT 42
+ EN + A++ELNG+ +N+K + +AA +G N
Sbjct: 265 NFENPDAASRAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQILKDAADKYQGLN- 323
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCI 94
+++ NL D+ ++RELF +G + C ++R+ GFV + + ++ +
Sbjct: 324 ----LYLKNLDDSIGDDQLRELFSNFGKITSCKVMRDQNGLSKGSGFVAFSTREEASQAL 379
Query: 95 KELNGMMVDGKPMKVVVA 112
E+NG M+ GKP+ V A
Sbjct: 380 TEMNGKMISGKPLYVAFA 397
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 17/118 (14%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAP 59
+ N + A++ LN +N KP+++ + ++ R G + +F+ NL
Sbjct: 87 NFNNPLDAARALEVLNFAPLNNKPIRVMYSNRDPSSRRSG----SANIFIKNLDKMIDNK 142
Query: 60 EVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 109
+ E F +GT++ C + + +GFV + + + IK LNGM+++ KP+ V
Sbjct: 143 SLHETFSSFGTILSCKVAMDEGGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFV 200
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 93
PTT ++VG+L + ++ ELF G VV + R+ Y +V+ ++P D +
Sbjct: 38 PTTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLDAARA 97
Query: 94 IKELNGMMVDGKPMKVV 110
++ LN ++ KP++V+
Sbjct: 98 LEVLNFAPLNNKPIRVM 114
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 21/118 (17%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI---------EAATSRKGPNTPTTKVFVGNLSDN 55
+++E + AI +LNG ++N+K + + E A S+ T V+V NLS++
Sbjct: 167 QFDSEESAQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSK----TKFNNVYVKNLSES 222
Query: 56 TRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGK 105
T E+ + F YGT+ I+R+ +GFV+ ++P D K ++ LNG VD K
Sbjct: 223 TTDEELMKFFGEYGTITSAVIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKVDDK 280
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR-------KGPNTPTTK----------V 47
+ EN ++ A++ LNG+ V++K + A + KG + K +
Sbjct: 258 NFENPDDAAKAVEGLNGKKVDDKEWYVGKAQKKSEREQELKGRFEQSIKESADKYQGVNL 317
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
++ NL D +++E+F YGT+ C ++R+ GFV +P + ++ + E+NG
Sbjct: 318 YLKNLDDTISDEKLKEMFAEYGTITSCKVMRDPTGIGRGSGFVAFSTPEEASRALGEMNG 377
Query: 100 MMVDGKPMKVVVA 112
M+ GKP+ V +A
Sbjct: 378 KMIAGKPLYVALA 390
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEV 61
+ N ++ A+ LN +N +P++I S + P+ + T +F+ NL +
Sbjct: 80 NFSNPQDAARALDVLNFTPLNNRPIRI--MYSHRDPSLRKSGTANIFIKNLDKAIDHKAL 137
Query: 62 RELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAG 113
+ F +G ++ C I + YGFV DS + I +LNGM+++ K +V V
Sbjct: 138 HDTFSSFGLILSCKIATDASGLSKGYGFVQFDSEESAQNAIDKLNGMLINDK--QVYVGH 195
Query: 114 FI 115
F+
Sbjct: 196 FL 197
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNG-------------QIVNEKPLKI----EAATSRKGPNTPTTKV 47
+ EN E+ A++ LNG Q +E+ +++ E + + +
Sbjct: 252 NFENAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAKEAVDKSQGLNL 311
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
++ NL D+ +++ELF PYGT+ C ++R+ GFV +P + ++ + E+NG
Sbjct: 312 YIKNLDDSISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNG 371
Query: 100 MMVDGKPMKVVVA 112
MV KP+ V +A
Sbjct: 372 KMVVSKPLYVALA 384
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 13/112 (11%)
Query: 7 ENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEV 61
+++E + AI++LNG ++N+K P + T T VFV NLS++T E+
Sbjct: 163 DSEEAAQKAIEKLNGMLLNDKQVYVGPFVRKHERDMAVDKTRFTNVFVKNLSESTLEEEL 222
Query: 62 RELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 105
R++F +G + ++++ +GFV+ + + D + ++ LNG +D K
Sbjct: 223 RKIFGEFGAITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNGYKLDNK 274
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
N ++ A++ LN ++ KP++I + T R+ N +F+ NL + +
Sbjct: 77 NPQDAARALEVLNFTPLHGKPIRIMYSNRDPTIRRSGNG---NIFIKNLDKAIDHKALHD 133
Query: 64 LFVPYGTVVECDIV-------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVVVAGFI 115
F +G ++ C + + YGFV DS + K I++LNGM+++ K +V V F+
Sbjct: 134 TFSAFGNILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDK--QVYVGPFV 191
>gi|226467145|emb|CAX76053.1| RNA-binding protein 4 [Schistosoma japonicum]
Length = 203
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
K+FVGNL+ ++A ++R+ F +G V ECD+V NYGFVH++ + I L ++DG
Sbjct: 3 KIFVGNLNPESKASDLRKKFEAFGKVTECDVVNNYGFVHMEKESEAEAAIAGLQNAILDG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VKINV 67
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GN+NP + +R FE +GKV ECDVV NYGFV
Sbjct: 3 KIFVGNLNPESKASDLRKKFEAFGKVTECDVVNNYGFV 40
>gi|38345560|emb|CAE03434.2| OSJNBa0032F06.17 [Oryza sativa Japonica Group]
Length = 924
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 17/121 (14%)
Query: 15 AIKELNGQIVNEKPLKI--------EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFV 66
AIK +NG++V LK+ E + + T K++V NLS + + LF+
Sbjct: 266 AIKRMNGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFL 325
Query: 67 PYGTVVECDIVRN--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVAGFISS 117
P+G V + ++ YGFV SP + + LNG +VDG+ ++V V+G S+
Sbjct: 326 PFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPST 385
Query: 118 I 118
+
Sbjct: 386 L 386
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 9/82 (10%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCIK 95
T ++VGNL + + ++ ELF+P+G +V +V + YGFV P ++ IK
Sbjct: 209 TNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIK 268
Query: 96 ELNGMMVDGKPMKVVVAGFISS 117
+NG +V+G +KV V GF SS
Sbjct: 269 RMNGRLVEGTALKVRVTGFPSS 290
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAA---------TSRKGPNTPTTKVFVGNLSDNTRA 58
+ E AI +NG +V + + + A + + +++++ NL + A
Sbjct: 467 DSESATKAIAAMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTA 526
Query: 59 PEVRELFVPYGTVVECDIVRNYGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
++ LF P+G + + + Y V + D+P K ++ ++G MV+GK + V
Sbjct: 527 DKMVNLFAPFGQITKVLMNLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVV 578
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 34 ATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHI 85
+T+R + ++V N+ + ++ ELF+P+G + +V + YGF+
Sbjct: 406 STTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKF 465
Query: 86 -DSPDINKCIKELNGMMVDGKPMKVVVAGF 114
DS K I +NG +V G+ + V VAG
Sbjct: 466 TDSESATKAIAAMNGALVGGEMIIVRVAGL 495
>gi|133247|sp|P28644.1|ROC1_SPIOL RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP
Length = 233
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN-------TPTTKVFVGNLSDNTRA 58
M EE A++ LNG ++ + L + A R P P+ +V+VGNL +
Sbjct: 103 MSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDT 162
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 109
+ +LF +G VV +V R +GFV + S ++N I L+G +DG+ ++V
Sbjct: 163 SRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRV 222
Query: 110 VVA 112
VA
Sbjct: 223 NVA 225
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 24/129 (18%)
Query: 8 NDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVG 50
N EE + A+ E+NG+ VN +K ++ ++ RK ++ +V
Sbjct: 240 NHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVK 299
Query: 51 NLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVD 103
NL D +R+ F+PYGT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 300 NLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVS 359
Query: 104 GKPMKVVVA 112
KP+ V +A
Sbjct: 360 TKPLYVALA 368
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +++ +P++I S++ P + VF+ NL ++ + + F
Sbjct: 64 DAERALDTMNFEVIKGRPIRI--MWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V R YGFVH ++ + N+ I+ +NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDR--KVFVGHFKS 175
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+ +NG ++N++ + + SR+ T V++ N ++
Sbjct: 144 HFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGK 105
+RE+F +G + ++ R +GFV+ + + K + E+NG V+G+
Sbjct: 204 DKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGR 259
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 24/129 (18%)
Query: 8 NDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVG 50
N EE + A+ E+NG+ VN +K ++ ++ RK ++ +V
Sbjct: 240 NHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVK 299
Query: 51 NLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVD 103
NL D +R+ F+PYGT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 300 NLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVS 359
Query: 104 GKPMKVVVA 112
KP+ V +A
Sbjct: 360 TKPLYVALA 368
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +++ +P++I S++ P + VF+ NL ++ + + F
Sbjct: 64 DAERALDTMNFEVIKGRPIRI--MWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V R YGFVH ++ + N+ I+ +NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDR--KVFVGHFKS 175
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+ +NG ++N++ + + SR+ T V++ N ++
Sbjct: 144 HFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGK 105
+RE+F +G + ++ R +GFV+ + + K + E+NG V+G+
Sbjct: 204 DKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGR 259
>gi|212723432|ref|NP_001132009.1| uncharacterized protein LOC100193414 [Zea mays]
gi|194693184|gb|ACF80676.1| unknown [Zea mays]
gi|413942172|gb|AFW74821.1| hypothetical protein ZEAMMB73_961242 [Zea mays]
gi|448878186|gb|AGE46056.1| arginine/serine-rich splicing factor RS2Z35 transcript I [Zea mays]
Length = 314
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG L+ TR+ ++ LF YG + E ++ R+Y F+ P D + L+G V
Sbjct: 10 NTRLYVGRLAPRTRSRDLEYLFSKYGRIREVELKRDYAFIEFSDPRDADDAQYNLDGREV 69
Query: 103 DGKPMKVVVA----------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNF 146
DG + V A G C N CG GHW+++C +AG++
Sbjct: 70 DGSRIIVEFAKGVPRGSGGSREYMGRGPPPGTGRCFN------CGMDGHWARDC-KAGDW 122
Query: 147 RSSGCYCKSKSSH 159
++ CY +S H
Sbjct: 123 KNK-CYRCGESGH 134
>gi|363746191|ref|XP_003643562.1| PREDICTED: RNA-binding protein 14-like, partial [Gallus gallus]
Length = 144
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+ ++ AI +LNG ++ + + +E + R T T K+FVGN+S + E+R L
Sbjct: 74 HLRDEAAAARAITQLNGHQLHGRRIVVEPSRPRP---TNTCKIFVGNVSAACTSGELRSL 130
Query: 65 FVPYGTVVECDIVR 78
F YGTVVECD+V+
Sbjct: 131 FQQYGTVVECDVVK 144
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 5/58 (8%)
Query: 285 YQSFGTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 341
+Q G +V+E +R P T KIF+GNV+ + +R LF++YG VVECDVVK
Sbjct: 91 HQLHGRRIVVEPSRPRP----TNTCKIFVGNVSAACTSGELRSLFQQYGTVVECDVVK 144
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPY-GTVVECDIVRNYGFVHI-DSPDINKCIKELNGM 100
P K+FVGN+ + A E+ ELF G V+ +++ + FVH+ D + I +LNG
Sbjct: 32 PGIKLFVGNVPEEATAEELSELFSGVAGPVLGIALMKQFAFVHLRDEAAAARAITQLNGH 91
Query: 101 MVDGKPMKV 109
+ G+ + V
Sbjct: 92 QLHGRRIVV 100
>gi|195503078|ref|XP_002098501.1| GE10405 [Drosophila yakuba]
gi|194184602|gb|EDW98213.1| GE10405 [Drosophila yakuba]
Length = 383
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMV 102
T KVFVG+L + E+R LF YG+VVECD++ FVH+++ D+ + I LNG +
Sbjct: 4 TAKVFVGSLPR-CKPDELRRLFTNYGSVVECDVMNRCAFVHLENTDMAEAAIAALNGTIF 62
Query: 103 DGKPMKVVVAG 113
G+P+ VV AG
Sbjct: 63 KGQPI-VVEAG 72
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKP-----------------LKIEAATSRKGPNTPTTKV 47
+ EN ++ A++ LNG+++NEK K E K +
Sbjct: 250 NFENVDDAANAVENLNGKLINEKEWYVGRAQKKSEREAELKAKFEQVRKEKEEKFQGVNL 309
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
++ N+ D+ ++RELF +GTV C ++++ GFV +P + + + ++NG
Sbjct: 310 YLKNIDDSIDDEKLRELFAVFGTVTSCKVMKSPQGQSMGSGFVTFSAPEEAMQAVNDMNG 369
Query: 100 MMVDGKPMKVVVA 112
MV KP+ V +A
Sbjct: 370 KMVGSKPLYVALA 382
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 62/113 (54%), Gaps = 12/113 (10%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK----VFVGNLSDNTRAPE 60
E +E + AI+++NG ++N++ + + ++ + ++K V+V NL++ T +
Sbjct: 160 QFEKEESAQIAIEKVNGMLINDRQVSVAPFIRKQERDMASSKNFNNVYVKNLAEATTDED 219
Query: 61 VRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
+R++F +G + ++R+ +GFV+ ++ D ++ LNG +++ K
Sbjct: 220 LRKVFAGFGPISSAVVMRDADGKSKCFGFVNFENVDDAANAVENLNGKLINEK 272
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 61/117 (52%), Gaps = 15/117 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFV 66
++ A++ LN +V KP++I S + P+ + +F+ NL + + + F
Sbjct: 78 QDASQALELLNFTLVKGKPIRI--MYSHRDPSIRKSGAANIFIKNLEKSIDNKALHDTFS 135
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFI 115
+GT++ C +V + YGFV + + + I+++NGM+++ + +V VA FI
Sbjct: 136 AFGTILSCRVVMDDAGNSKGYGFVQFEKEESAQIAIEKVNGMLINDR--QVSVAPFI 190
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 35/138 (25%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI----------------------EAATSRKGPNT 42
+ EN ++ A++ LNG+ ++K + EAA +G N
Sbjct: 253 NFENADDAARAVEALNGKKFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGAN- 311
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCI 94
++V NL D+ +++ELF P+GT+ C ++R+ GFV +PD ++ +
Sbjct: 312 ----LYVKNLDDSLGDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRAL 367
Query: 95 KELNGMMVDGKPMKVVVA 112
E+NG MV KP+ V +A
Sbjct: 368 LEMNGKMVVSKPLYVTLA 385
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 61/114 (53%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAP 59
+N+E + AI++LNG ++N+K + + ++ + K VFV NLS++T
Sbjct: 162 QFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTADKAKFNNVFVKNLSESTTDD 221
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 105
E++ +F +GT+ ++R+ +GFV+ + + D + ++ LNG D K
Sbjct: 222 ELKNVFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKFDDK 275
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 15/122 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ N ++ A+ LN +N +P++I S + P+ + +F+ NL +
Sbjct: 75 NFSNPQDAARALDVLNFTPLNNRPIRI--MYSHRDPSIRKSGQGNIFIKNLDRAIDHKAL 132
Query: 62 RELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAG 113
+ F +G ++ C + + YGFV D+ + K I++LNGM+++ K +V V
Sbjct: 133 HDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK--QVYVGP 190
Query: 114 FI 115
F+
Sbjct: 191 FL 192
>gi|194905856|ref|XP_001981271.1| GG11980 [Drosophila erecta]
gi|190655909|gb|EDV53141.1| GG11980 [Drosophila erecta]
Length = 382
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGMMV 102
T KVFVG+L + E+R LF YG+VVECD++ FVH+++ D+ + I LNG +
Sbjct: 4 TAKVFVGSLPR-CKPDELRRLFTNYGSVVECDVMNRCAFVHLENTDMAEAAIAALNGTIF 62
Query: 103 DGKPMKVVVAG 113
G+P+ VV AG
Sbjct: 63 KGQPI-VVEAG 72
>gi|339522327|gb|AEJ84328.1| RNA-binding protein 4 [Capra hircus]
Length = 143
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH-IDSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++N+GFVH D P I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNHGFVHREDKPAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVGASTNKSKTSTKLHV 82
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H E+ AI+ L+ ++ + + A+T++ + +TK+ VGN+S E+R
Sbjct: 41 HREDKPAAEDAIRNLHHYKLHGVNINVGASTNK---SKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
F YG V+ECDIV++Y FVH++ + D + I+ L+ G
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQG 138
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KN+GFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNHGFV 40
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 29/38 (76%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+ +GN++P + + +R FE+YG V+ECD+VK+Y FV
Sbjct: 79 KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFV 116
>gi|21309|emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea]
Length = 226
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN-------TPTTKVFVGNLSDNTRA 58
M EE A++ LNG ++ + L + A R P P+ +V+VGNL +
Sbjct: 96 MSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDT 155
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 109
+ +LF +G VV +V R +GFV + S ++N I L+G +DG+ ++V
Sbjct: 156 SRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRV 215
Query: 110 VVA 112
VA
Sbjct: 216 NVA 218
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKP-----------------LKIEAATSRKGPNTPTTKV 47
+ EN ++ A+ LNG+ ++K K E + + + +
Sbjct: 264 NFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNL 323
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
+V NL ++ ++RE F P+GT+ C ++R+ GFV +P + ++ I E+NG
Sbjct: 324 YVKNLDESVTDDKLREHFAPFGTITSCKVMRDPTGVSRGSGFVAFSTPEEASRAITEMNG 383
Query: 100 MMVDGKPMKVVVA 112
M+ KP+ V +A
Sbjct: 384 KMIVTKPLYVALA 396
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 7 ENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEV 61
+ DE + AI +LNG ++N+K P + G T V+V NLS++ E+
Sbjct: 175 DTDEAAQRAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEEL 234
Query: 62 RELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 105
++F +G C I+R+ +GFV+ + S D + + LNG D K
Sbjct: 235 NKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDK 286
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 66
++ A+ ELN +N + +++ S + P+ + +F+ NL + + E F
Sbjct: 91 QDASRALNELNFMALNGRAIRV--MYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFS 148
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFISSI 118
+G ++ C + + YGFV D+ + + I +LNGM+++ K +V V F+ +
Sbjct: 149 AFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDK--QVYVGPFVHKL 206
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNG-------------QIVNEKPLKI----EAATSRKGPNTPTTKV 47
+ EN E+ A++ LNG Q +E+ +++ E + + +
Sbjct: 252 NFENAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAQEAVDKSQGLNL 311
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
++ NL D+ +++ELF PYGT+ C ++R+ GFV +P + ++ + E+NG
Sbjct: 312 YLKNLDDSISDDKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSTPEEASRALSEMNG 371
Query: 100 MMVDGKPMKVVVA 112
MV KP+ V +A
Sbjct: 372 KMVVSKPLYVALA 384
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 64/114 (56%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN-----TPTTKVFVGNLSDNTRAP 59
++DE + AI++LNG ++N+K + + ++ + T T VFV NLS++T
Sbjct: 161 QYDSDEAAQKAIEKLNGMLLNDKQVYVGPFVRKQERDMAVDKTRFTNVFVKNLSESTLEE 220
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 105
E+R++F +GT+ ++++ +GFV+ + + D + ++ LNG +D K
Sbjct: 221 ELRKIFGEFGTITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNGYKLDNK 274
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
N ++ A++ LN ++ KP++I + T R+ N +F+ NL + +
Sbjct: 77 NPQDAARALEVLNFTPLHGKPIRIMYSNRDPTIRRSGNG---NIFIKNLDKAIDHKALHD 133
Query: 64 LFVPYGTVVECDIV-------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVVVAGFI 115
F +G ++ C + + YGFV DS + K I++LNGM+++ K +V V F+
Sbjct: 134 TFSAFGNILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDK--QVYVGPFV 191
>gi|147774947|emb|CAN60012.1| hypothetical protein VITISV_036556 [Vitis vinifera]
Length = 306
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG LS TR ++ LF YG V + D+ ++ FV P D + LNG
Sbjct: 10 NTRLYVGRLSSRTRTRDLESLFSRYGRVRDVDMKHDFAFVEFSDPRDADDARYNLNGRDF 69
Query: 103 DGKPMKVVVAGFISSILSCLNVIFFIR-----------CGRGGHWSKECPRAGNFRSSGC 151
DG + V A S + + R CG GHW+++C +AG++++ C
Sbjct: 70 DGSRIIVEFAKGGPRGGSGGSREYLGRGPPPGSGRCFNCGIDGHWARDC-KAGDWKNK-C 127
Query: 152 Y 152
Y
Sbjct: 128 Y 128
>gi|297820078|ref|XP_002877922.1| hypothetical protein ARALYDRAFT_323893 [Arabidopsis lyrata subsp.
lyrata]
gi|297323760|gb|EFH54181.1| hypothetical protein ARALYDRAFT_323893 [Arabidopsis lyrata subsp.
lyrata]
Length = 284
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 22/123 (17%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG LS TRA ++ LF YG V + D+ R+Y FV P D + L+G
Sbjct: 10 NTRLYVGRLSSRTRARDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDF 69
Query: 103 DGKPMKVVVA-------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSS 149
DG + V + G C N CG GHW+++C AG++++
Sbjct: 70 DGSRITVEASRGAPRGSRDNGSRGPPPGSGRCFN------CGVDGHWARDCT-AGDWKNK 122
Query: 150 GCY 152
CY
Sbjct: 123 -CY 124
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 23/119 (19%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL----------KIEAATSRKGPNTPTTKVFVGNLSD 54
EN+E ++AI LNG ++N+K + +IEA S K T V+V NLS+
Sbjct: 157 QFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQERIEATGSPK-----FTNVYVKNLSE 211
Query: 55 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 105
T ++++ F YG++ ++++ +GFV+ SPD +++LNG + K
Sbjct: 212 TTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDK 270
Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 27/134 (20%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK------------------ 46
+ ++ + A+++LNG N+K + A RKG K
Sbjct: 248 NFQSPDSAAAAVEKLNGTTFNDKVWYVGRA-QRKGEREAELKARFEQERNSRYEKLKAAN 306
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELN 98
+++ NL D +++ELF +G++ C ++ + GFV +P + ++ + +N
Sbjct: 307 LYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMN 366
Query: 99 GMMVDGKPMKVVVA 112
G M+ KP+ V VA
Sbjct: 367 GKMIGKKPLYVAVA 380
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 15/122 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ N ++ A++ LN +N K ++I S + P+ + VF+ NL + +
Sbjct: 70 NFSNPQDAANAMELLNFTPLNGKAIRI--MVSHRDPSMRKSGHANVFIKNLDTSIDNKAL 127
Query: 62 RELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAG 113
+E F +G V+ C + + YGFV ++ + + I LNGM+++ K +V V
Sbjct: 128 QETFASFGPVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDK--EVFVGR 185
Query: 114 FI 115
F+
Sbjct: 186 FV 187
>gi|326926670|ref|XP_003209521.1| PREDICTED: hypothetical protein LOC100540496 [Meleagris gallopavo]
Length = 304
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+ ++ AI +LNG ++ + + +E + R T T K+FVGN+S + E+R L
Sbjct: 105 HLRDEAAAARAITQLNGHQLHGRRIVVEPSRPRP---TNTCKIFVGNVSAACTSGELRSL 161
Query: 65 FVPYGTVVECDIVR 78
F YGTVVECD+V+
Sbjct: 162 FQQYGTVVECDVVK 175
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 5/58 (8%)
Query: 285 YQSFGTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 341
+Q G +V+E +R P T KIF+GNV+ + +R LF++YG VVECDVVK
Sbjct: 122 HQLHGRRIVVEPSRPRP----TNTCKIFVGNVSAACTSGELRSLFQQYGTVVECDVVK 175
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFV-PYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGM 100
P K+FVGN+ + A E+ ELF G V+ +++ + FVH+ D + I +LNG
Sbjct: 63 PGIKLFVGNVPEEATAEELSELFSGAAGPVLGIALMKQFAFVHLRDEAAAARAITQLNGH 122
Query: 101 MVDGKPMKVVV 111
+ G+ ++VV
Sbjct: 123 QLHGR--RIVV 131
>gi|125544079|gb|EAY90218.1| hypothetical protein OsI_11785 [Oryza sativa Indica Group]
Length = 265
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAA-------TSRKGPNTPTTKVFVGNLSDNTRA 58
M + EE A+++ NG I++ + L++ + +SR+ P +V+VGNLS
Sbjct: 134 MSSVEEVEAAVEQFNGYILDGRSLRVNSGPPPPREQSSRRAPRGEANRVYVGNLSWGVDN 193
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 109
+ LF G V+E ++ R +GFV S ++ + L+G +DG+ ++V
Sbjct: 194 AALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRV 253
Query: 110 VVA 112
VA
Sbjct: 254 TVA 256
>gi|224088597|ref|XP_002308490.1| predicted protein [Populus trichocarpa]
gi|222854466|gb|EEE92013.1| predicted protein [Populus trichocarpa]
Length = 181
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 22/123 (17%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
+T+++VG+L+ TR+ ++ LF YG V + D+ R+Y FV P D + L+G
Sbjct: 10 STRLYVGHLAARTRSRDLEHLFSKYGRVRDVDMKRDYAFVEFSDPRDADDARHYLDGKEF 69
Query: 103 DGKPMKVVVAGFI-------------SSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSS 149
DG + V A + C N CG GHW+++C +AG++++
Sbjct: 70 DGSRIIVEFAKGVPRGSREYLGRGPPPGSGRCFN------CGIDGHWARDC-KAGDWKNK 122
Query: 150 GCY 152
CY
Sbjct: 123 -CY 124
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAP 59
+N+E + AI +LNG ++N+K + + R+ + T K V+V NLS+ T
Sbjct: 163 QFDNEESAKNAIDKLNGMLLNDKQVYVGPFLRRQERESGTDKTKFNNVYVKNLSETTTEE 222
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGK 105
+++++F YG + ++R+ +GFV+ ++P D + ++ LNG D K
Sbjct: 223 DLKKIFGEYGAITSAVVMRDGDGKSRCFGFVNFENPDDAARSVEALNGKTFDEK 276
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR-------KGPNTPTTK----------V 47
+ EN ++ +++ LNG+ +EK + A + KG T K +
Sbjct: 254 NFENPDDAARSVEALNGKTFDEKEWYVGKAQKKSEREVELKGQFEQTLKETVDKFEGLNL 313
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELNG 99
+V NL D+ +++ELF +GT+ C ++R+ GFV + + + +K + E+NG
Sbjct: 314 YVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGVSKGSGFVAYSTAEEASKALTEMNG 373
Query: 100 MMVDGKPMKVVVA 112
M+ KP+ V +A
Sbjct: 374 KMIVSKPLYVALA 386
>gi|356502327|ref|XP_003519971.1| PREDICTED: polyadenylate-binding protein 5-like [Glycine max]
Length = 616
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 13/112 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG----PNTPT-TKVFVGNLSDNTRAP 59
+N+E + AIKELNG ++N+K + + +R+ +P T V+V N S+
Sbjct: 139 QFDNEESAQNAIKELNGMLINDKKVYVGLFVNRQERAQVDGSPKFTNVYVKNFSETYTDE 198
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVD 103
++ +LF YGT+ ++++ +GFV+ +SPD ++ LNG V+
Sbjct: 199 DLEQLFSTYGTITSAVVMKDTDGKSRCFGFVNFESPDSAVAAVERLNGTTVN 250
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 26/134 (19%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL------------------KIEAATSRKGPNTPTTK 46
+ E+ + A++ LNG VN+ + + E RK T
Sbjct: 230 NFESPDSAVAAVERLNGTTVNDDKVLYVGRAQRKAEREAELKARFELERIRKYEKYHGTN 289
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELN 98
++V NL N +++ELF +GT+ C ++ + YGFV +P + N+ + E+N
Sbjct: 290 LYVKNLDYNINDDKLKELFSEFGTITSCKVMLEPNGRSKGYGFVAFSAPRNANRALHEMN 349
Query: 99 GMMVDGKPMKVVVA 112
G M+ +P+ V VA
Sbjct: 350 GKMIGRRPLYVAVA 363
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVREL 64
N ++ A++ LN +N K +++ S + P+ + VF+ NL + + +
Sbjct: 55 NPQDAANAMEHLNFTPLNGKSIRV--MFSNRDPSIRKSGYANVFIKNLDISIDNKTLHDT 112
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G V+ + + YGFV D+ + IKELNGM+++ K KV V F++
Sbjct: 113 FAAFGFVLSSKVAVDSIGQSKGYGFVQFDNEESAQNAIKELNGMLINDK--KVYVGLFVN 170
>gi|242089653|ref|XP_002440659.1| hypothetical protein SORBIDRAFT_09g004723 [Sorghum bicolor]
gi|241945944|gb|EES19089.1| hypothetical protein SORBIDRAFT_09g004723 [Sorghum bicolor]
Length = 123
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 19/115 (16%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVD 103
+K+FV N+S T+ ++ +LF YG V + ++ NYGFV D +C ELNG +
Sbjct: 22 NSKLFVSNISSLTQENDISDLFSKYGRVRKTNLKENYGFVDADDA---RC--ELNGQEFN 76
Query: 104 GKPMKVVVAGFI------SSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCY 152
G + V A + S+ + C N CG GH+S +C +AG+++ CY
Sbjct: 77 GNRISVKFATGVPRGPVDSAQILCYN------CGAEGHFSSDC-KAGDWKDR-CY 123
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G K+F+ N++ T I LF KYG+V + ++ +NYGFV
Sbjct: 21 GNSKLFVSNISSLTQENDISDLFSKYGRVRKTNLKENYGFV 61
>gi|410974608|ref|XP_003993735.1| PREDICTED: RNA-binding protein 14 isoform 2 [Felis catus]
Length = 156
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNGQIVNE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G + + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRP-LNTWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V C ++ +Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFDQRGKVYVCTLISDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNG 99
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHG 57
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+ T+KIF+GNV+ + + +R LF++ GKV C ++ +Y FV
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFDQRGKVYVCTLISDYAFV 117
>gi|242035621|ref|XP_002465205.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
gi|241919059|gb|EER92203.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
Length = 262
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 16/123 (13%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAA-------TSRKGPNTPTTKVFVGNLSDNTRA 58
M + +E A+++ NG +++ + L++ + +S++GP +V+VGNLS
Sbjct: 131 MSSVQEVEAAVEQFNGYVLDGRSLRVNSGPPPPRDPSSQRGPRGDANRVYVGNLSWGVDN 190
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 109
+ LF G V+E IV R +GFV S ++ I L+G +DG+ ++V
Sbjct: 191 SALANLFSEQGEVLEARIVYDRESGRSRGFGFVTYGSAEEVENAISNLDGSDLDGRQIRV 250
Query: 110 VVA 112
VA
Sbjct: 251 TVA 253
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKP-----------------LKIEAATSRKGPNTPTTKV 47
+ EN ++ A+ LNG+ ++K K E + + + +
Sbjct: 270 NFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNL 329
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
+V NL ++ ++RE F P+GT+ C ++R+ GFV +P + + I E+NG
Sbjct: 330 YVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNG 389
Query: 100 MMVDGKPMKVVVA 112
M+ KP+ V +A
Sbjct: 390 KMIVTKPLYVALA 402
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 7 ENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEV 61
+ DE + AI +LNG ++N+K P + G T V+V NLS++ E+
Sbjct: 181 DTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEEL 240
Query: 62 RELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 105
++F +G C I+R+ +GFV+ + S D + + LNG D K
Sbjct: 241 NKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDK 292
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 66
++ A+ ELN +N + +++ S + P+ + +F+ NL + + E F
Sbjct: 97 QDASRALNELNFMALNGRAIRV--MYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFS 154
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFISSI 118
+G ++ C + + YGFV D+ + + I +LNGM+++ K +V V F+ +
Sbjct: 155 AFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDK--QVYVGPFVHKL 212
>gi|146179448|ref|XP_001020597.2| hypothetical protein TTHERM_00219250 [Tetrahymena thermophila]
gi|146144570|gb|EAS00352.2| hypothetical protein TTHERM_00219250 [Tetrahymena thermophila
SB210]
Length = 256
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID---SPDINKCIKELNGMMVD 103
+FVG LS R ++R+ F YG + + D R GF I+ S D + +++++G +
Sbjct: 13 IFVGKLSSRVREEDLRDEFRRYGRIRDIDFRRQRGFAFIEYSSSSDAKQAVEDMDGQRFE 72
Query: 104 GKPMKVVVAGFISSIL----SCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKSKSSH 159
+ V S S +V + CGR GHW+ EC + GN+ ++ CY KS H
Sbjct: 73 DTRIVVQYKENRSDRNRRGPSTADVCY--NCGRKGHWANEC-KEGNW-NNRCYRCGKSGH 128
>gi|29841103|gb|AAP06116.1| similar to NM_031492 RNA-binding proteinlark in Homo sapiens
[Schistosoma japonicum]
gi|226467147|emb|CAX76054.1| RNA-binding protein 4 [Schistosoma japonicum]
gi|226467149|emb|CAX76055.1| RNA-binding protein 4 [Schistosoma japonicum]
gi|226467151|emb|CAX76056.1| RNA-binding protein 4 [Schistosoma japonicum]
Length = 281
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
K+FVGNL+ ++A ++R+ F +G V ECD+V NYGFVH++ + I L ++DG
Sbjct: 3 KIFVGNLNPESKASDLRKKFEAFGKVTECDVVNNYGFVHMEKESEAEAAIAGLQNAILDG 62
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GN+NP + +R FE +GKV ECDVV NYGFV
Sbjct: 3 KIFVGNLNPESKASDLRKKFEAFGKVTECDVVNNYGFV 40
>gi|225439817|ref|XP_002277105.1| PREDICTED: uncharacterized protein LOC100258584 [Vitis vinifera]
Length = 307
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG LS TR ++ LF YG V + D+ ++ FV P D + LNG
Sbjct: 10 NTRLYVGRLSSRTRTRDLESLFSRYGRVRDVDMKHDFAFVEFSDPRDADDARYNLNGRDF 69
Query: 103 DGKPMKVVVAGFISSILSCLNVIFFIR-----------CGRGGHWSKECPRAGNFRSSGC 151
DG + V A S + + R CG GHW+++C +AG++++ C
Sbjct: 70 DGSRIIVEFAKGGPRGGSGGSREYLGRGPPPGSGRCFNCGIDGHWARDC-KAGDWKNK-C 127
Query: 152 Y 152
Y
Sbjct: 128 Y 128
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKV 47
+ EN E+ + A++EL+ + ++ KP+ + E A K + +
Sbjct: 301 NFENHEDAQRAVEELDNKEIHGKPVFVGRAQKKSEREEELRKQYEQAKYEKAGKYQGSNL 360
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNG 99
++ NL D+ ++R F P+GT+ C ++R+ +GFV SPD + + E+N
Sbjct: 361 YIKNLEDDVDDEKLRAEFEPFGTITSCKVMRDEKGTSKGFGFVCFSSPDEATRAMSEMNN 420
Query: 100 MMVDGKPMKVVVA 112
+V KP+ V +A
Sbjct: 421 KIVGTKPLYVALA 433
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+ +LN + KP +I S++ P T +F+ NL + +
Sbjct: 124 NYNDGERALDQLNYSQIRGKPCRI--MWSQRDPGLRKTGQGNIFIKNLDQGIDNKALHDT 181
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFIS 116
F +GTV+ C + + YGFVH DS + + IK +NGM+++ K KV V IS
Sbjct: 182 FAAFGTVLSCKVATDDSGLSKGYGFVHYDSNEAAEAAIKAVNGMLLNDK--KVFVGQHIS 239
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 24/166 (14%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H +++E AIK +NG ++N+K + + SRK + T ++V NL
Sbjct: 208 HYDSNEAAEAAIKAVNGMLLNDKKVFVGQHISRKERQSKIDEMKSHFTNLYVKNLDTEVG 267
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
E LF +G + I ++ +GFV+ ++ D + ++EL+ + GKP+ V
Sbjct: 268 EEEFEGLFSQFGPITSAVIQKDEEGNSKGFGFVNFENHEDAQRAVEELDNKEIHGKPVFV 327
Query: 110 VVAGFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKS 155
A S L R + + +AG ++ S Y K+
Sbjct: 328 GRAQKKSEREEEL---------RKQYEQAKYEKAGKYQGSNLYIKN 364
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 13/116 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT----TKVFVGNLSDNTRAPE 60
H E+ + AI ++NG ++N + + + S K PT T VF NL+++ + +
Sbjct: 144 HYESQDSADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEIKFTNVFFKNLAEDVTSDQ 203
Query: 61 VRELFVPYGTVVECDIV--------RNYGFVHIDSPDINKCIKEL-NGMMVDGKPM 107
++EL PYGT+ I+ + + F + +S D K + E+ NG + GKP+
Sbjct: 204 LKELLAPYGTITNVAIMLDEKTGKSKGFAFANFESADAAKNVVEIENGKVFHGKPL 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 15/121 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVREL 64
N + A+ LN + KP +I S++ P+ + VF+ NL + +
Sbjct: 60 NAADAERALDTLNNTPIRGKPCRI--MWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDT 117
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C +V + +GFVH +S D +K I ++NGMM++G+ KV V F S
Sbjct: 118 FSAFGNILSCKVVTDDNNSSKGFGFVHYESQDSADKAIAKVNGMMINGQ--KVFVGPFKS 175
Query: 117 S 117
S
Sbjct: 176 S 176
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 23/130 (17%)
Query: 4 GHMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTK-----VFVGN 51
+ E+ + + ++ NG++ + KPL KIE K +T TK +++ N
Sbjct: 234 ANFESADAAKNVVEIENGKVFHGKPLYAGRAQKKIEREAELK--HTFETKYQGVNLYIKN 291
Query: 52 LSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSPD-INKCIKELNGMMV 102
+ D+ ++RE+F +GT+ ++++ +GFV SPD + + E+NG M+
Sbjct: 292 IDDSIDNDKLREVFSQFGTITSAVVMKDDKATTSKGFGFVCYTSPDEATRAVTEMNGRMI 351
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 352 GTKPLYVALA 361
>gi|224138530|ref|XP_002322837.1| predicted protein [Populus trichocarpa]
gi|222867467|gb|EEF04598.1| predicted protein [Populus trichocarpa]
Length = 179
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 22/123 (17%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
+T+++VG+L+ TR+ ++ LF YG V + D+ R+Y FV P D + L+G
Sbjct: 10 STRLYVGHLAARTRSRDLEHLFSKYGRVRDVDMKRDYAFVEFSDPRDADDARHYLDGKDF 69
Query: 103 DGKPMKVVVA-------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSS 149
DG + V A G C N CG GHW+++C +AG++++
Sbjct: 70 DGSRIIVEFAKGVPRGSREYLGRGPPPGSGRCFN------CGIDGHWARDC-KAGDWKNK 122
Query: 150 GCY 152
CY
Sbjct: 123 -CY 124
>gi|195399602|ref|XP_002058408.1| GJ14327 [Drosophila virilis]
gi|194141968|gb|EDW58376.1| GJ14327 [Drosophila virilis]
Length = 369
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDI-NKCIKELNGMMV 102
T KVFVG+L + E+R LF YG VVECDI+ GFVH+++ ++ + I LNG+
Sbjct: 3 TAKVFVGSLPPGCKPEELRHLFTNYGVVVECDIMNRCGFVHLETIEMAEEAIAALNGIEF 62
Query: 103 DGKPMKV 109
G+ + V
Sbjct: 63 KGQTIVV 69
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T K+F+G++ PG E +R LF YG VVECD++ GFV
Sbjct: 3 TAKVFVGSLPPGCKPEELRHLFTNYGVVVECDIMNRCGFV 42
>gi|302822192|ref|XP_002992755.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
gi|300139400|gb|EFJ06141.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
Length = 177
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 12 GRTAIKELNGQIVNEKPLKIE-----AATSRKGP---NTPTTKVFVGNLSDNTRAPEVRE 63
+ A+++L+G IV + LK ++GP TKVF+GNL + E
Sbjct: 56 AQVAVQKLDGHIVQGRALKASFSQPYKKAGKEGPVEVAASHTKVFIGNLPWGVDDGSLEE 115
Query: 64 LFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
F +G VVE IV R +GFV + SP + ++ +K L+G DG+ ++V +A
Sbjct: 116 FFRAHGKVVEAKIVYDRDTGRSRGFGFVTLSSPKEADEAVKSLDGADCDGRRLRVKLA 173
>gi|226467139|emb|CAX76050.1| RNA-binding protein 4 [Schistosoma japonicum]
gi|226467143|emb|CAX76052.1| RNA-binding protein 4 [Schistosoma japonicum]
Length = 275
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
K+FVGNL+ ++A ++R+ F +G V ECD+V NYGFVH++ + I L ++DG
Sbjct: 3 KIFVGNLNPESKASDLRKKFEAFGKVTECDVVNNYGFVHMEKESEAEAAIAGLQNAILDG 62
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GN+NP + +R FE +GKV ECDVV NYGFV
Sbjct: 3 KIFVGNLNPESKASDLRKKFEAFGKVTECDVVNNYGFV 40
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAP 59
E +E ++A+K LNG ++N+KP+ + ++ + K VFV NLS++T
Sbjct: 57 QYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKAKFNNVFVKNLSESTTKD 116
Query: 60 EVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGK 105
++ ++F YGT+ ++ R + FV+ +SP D + ++ELNG ++ K
Sbjct: 117 DLVKVFSGYGTITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELNGKKINDK 170
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 35/152 (23%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI----------------------EAATSRKGPNT 42
+ E+ ++ A++ELNG+ +N+K + +AA +G N
Sbjct: 148 NFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQN- 206
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCI 94
+++ NL D ++RELF +G + C I+R+ GFV + + ++ +
Sbjct: 207 ----LYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQAL 262
Query: 95 KELNGMMVDGKPMKVVVAGFISSILSCLNVIF 126
E+NG M+ GKP+ V A + L F
Sbjct: 263 TEMNGKMISGKPLYVAFAQRKEDRKAMLQAQF 294
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 23/119 (19%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL----------KIEAATSRKGPNTPTTKVFVGNLSD 54
EN+E ++AI LNG ++N+K + +IEA S K T V+V NLS+
Sbjct: 167 QFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQERIEATGSPK-----FTNVYVKNLSE 221
Query: 55 NTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 105
T ++++ F YG + ++++ +GFV+ SPD +++LNG + K
Sbjct: 222 TTSDEDLKKFFSNYGAITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDK 280
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 27/134 (20%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK------------------ 46
+ ++ + A+++LNG N+K + A RKG K
Sbjct: 258 NFQSPDSAAAAVEKLNGTTFNDKVWYVGRA-QRKGEREAELKARFEQERNSRYEKLKAAN 316
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELN 98
+++ NL D +++ELF +G++ C ++ + GFV +P + ++ + +N
Sbjct: 317 LYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMN 376
Query: 99 GMMVDGKPMKVVVA 112
G M+ KP+ V VA
Sbjct: 377 GKMIGKKPLYVAVA 390
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ N ++ A++ LN +N K ++I S + P+ + VF+ NL + +
Sbjct: 80 NFSNPQDASNAMELLNFTPLNGKAIRI--MVSHRDPSMRKSGHANVFIKNLDTSIDNKAL 137
Query: 62 RELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAG 113
+E F +G+V+ C + + YGFV ++ + + I LNGM+++ K +V V
Sbjct: 138 QETFASFGSVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDK--EVFVGR 195
Query: 114 FI 115
F+
Sbjct: 196 FV 197
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 17/124 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTR 57
H E +E R AI+++NG ++N K + + RK G V++ N D
Sbjct: 144 HFETEEAARQAIEKVNGMLLNGKKVYVGKFIPRKERIALLGDKMKRFNNVYIKNFGDELD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
++RELF P+G ++ ++ R +GFV + P+ K + LNGM + G KV
Sbjct: 204 DDKIRELFDPFGKIISAKVMTDEIGKSRGFGFVSYEEPEAAEKAVDNLNGMELGGG--KV 261
Query: 110 VVAG 113
+ AG
Sbjct: 262 LYAG 265
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 14/115 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N + +P++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDTIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C I + YGFVH ++ + + I+++NGM+++GK KV V FI
Sbjct: 122 FGNILSCKIASDENGSKGYGFVHFETEEAARQAIEKVNGMLLNGK--KVYVGKFI 174
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 29 LKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGF 82
+K+E +G N ++V NL D +R+ F +GT+ ++ + +GF
Sbjct: 284 IKMERINRYQGVN-----LYVKNLDDVVDDERLRKEFSQFGTITSARVMSEGGRSKGFGF 338
Query: 83 VHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
V SP+ K + E+NG ++ KP+ V +A
Sbjct: 339 VCFSSPEEATKAVTEMNGRIIVSKPLYVALA 369
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 35/138 (25%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKP---------------LKI-------EAATSRKGPNT 42
+ E+ ++ A++ LNG+ +++K LKI EAA +G N
Sbjct: 259 NFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGAN- 317
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCI 94
++V NL D+ +++ELF YGT+ C ++R+ GFV +P + ++ +
Sbjct: 318 ----LYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRAL 373
Query: 95 KELNGMMVDGKPMKVVVA 112
E+NG MV KP+ V +A
Sbjct: 374 LEMNGKMVASKPLYVTLA 391
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 59
+ +E + AI++LNG ++N+K P + G VFV NLS++T
Sbjct: 168 QFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDD 227
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGK 105
E+++ F +GT+ ++R+ +GFV+ +S D + ++ LNG +D K
Sbjct: 228 ELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDK 281
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 15/119 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVREL 64
N ++ A+ LN +N +P++I S + P+ + +F+ NL + +
Sbjct: 84 NPQDAARALDVLNFTPLNNRPIRI--MYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDT 141
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVVVAGFI 115
F +G ++ C + + YGFV D+ + K I++LNGM+++ K +V V F+
Sbjct: 142 FSSFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDK--QVYVGPFL 198
>gi|195996811|ref|XP_002108274.1| hypothetical protein TRIADDRAFT_37071 [Trichoplax adhaerens]
gi|190589050|gb|EDV29072.1| hypothetical protein TRIADDRAFT_37071 [Trichoplax adhaerens]
Length = 351
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 27/140 (19%)
Query: 18 ELNGQIVNEKPLKIEAATSRK--------------GPNTPTTKVFVGNLSDNTRAPEVRE 63
+LNG V P+ I+ S K GP T++++G+L N +R
Sbjct: 55 KLNGTKVEGIPIMIQRTQSEKNKIAALQAQQKAQQGP----TRLYIGSLHYNINEDMLRA 110
Query: 64 LFVPYGTVVECDIVRN--------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGF 114
+F P+G V +I+R+ YGF+ PD + +++LNG+ V G+P+KV
Sbjct: 111 IFEPFGLVENVNIIRDSDTNVSKGYGFIQYKEPDSARRALEQLNGLEVAGRPIKVGTVTD 170
Query: 115 ISSILSCLNVIFFIRCGRGG 134
S+ LS ++ + RGG
Sbjct: 171 RSADLSAMSALDDDDTERGG 190
>gi|440792856|gb|ELR14064.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 239
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 52 LSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVV 110
L+ + R ++ +LF YG + CD+ R YGFV D D +++L+G+ V G ++
Sbjct: 28 LALDCRPRDLEDLFYKYGKLTRCDVKRGYGFVEYEDRRDAQDALRDLDGVSVLG--TRIA 85
Query: 111 VAGFISSILSCLNVIFFIRCGRGGHWSKEC 140
+ + + + F RCG GHW+++C
Sbjct: 86 IEWAKGARRTDTDTCF--RCGEEGHWARDC 113
>gi|313225077|emb|CBY20870.1| unnamed protein product [Oikopleura dioica]
gi|313245842|emb|CBY34831.1| unnamed protein product [Oikopleura dioica]
Length = 272
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN-TPTTKVFVGNLSDNTRAPEVRE 63
H+ N+ E IK + VN+ I++ S+K N T + ++ V N+ R P++RE
Sbjct: 89 HVNNNTEENPHIKPYTPEAVNDPSTSIKSEDSKKASNNTESKRLHVSNIPFRFREPDLRE 148
Query: 64 LFVPYGTVVECDIVRN------YGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
+F +G + E +I+ N +GFV + D D ++ +E+N +DG+ ++V
Sbjct: 149 MFEKFGKITEVEIIFNDRGSKGFGFVSYADKDDADRAKREINHTKIDGRMIEV 201
>gi|195159214|ref|XP_002020477.1| GL13491 [Drosophila persimilis]
gi|194117246|gb|EDW39289.1| GL13491 [Drosophila persimilis]
Length = 390
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDI-NKCIKELNGMMV 102
T KVFVG+L + E+R LF YG VVE D++ GFVH+++ D+ + I LNG +
Sbjct: 3 TAKVFVGSLPSGCKPDELRRLFSNYGAVVEADVMNRCGFVHLETSDMADAAIAALNGTLF 62
Query: 103 DGKPMKVVVAG 113
G + VV AG
Sbjct: 63 KGVSI-VVEAG 72
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T K+F+G++ G + +R LF YG VVE DV+ GFV
Sbjct: 3 TAKVFVGSLPSGCKPDELRRLFSNYGAVVEADVMNRCGFV 42
>gi|302758260|ref|XP_002962553.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
gi|300169414|gb|EFJ36016.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
Length = 177
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 12 GRTAIKELNGQIVNEKPLKIEAA-----TSRKGP---NTPTTKVFVGNLSDNTRAPEVRE 63
+ A+++L+G IV + LK + ++GP TKVF+GNL + E
Sbjct: 56 AQVAVQKLDGHIVQGRALKASYSQPYKKAGKEGPVEVAASHTKVFIGNLPWGVDDGSLEE 115
Query: 64 LFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
F +G VVE IV R +GFV + SP + ++ +K L+G DG+ ++V +A
Sbjct: 116 FFRAHGKVVEVKIVYDRDTGRSRGFGFVTLSSPKEADEAVKSLDGADCDGRRLRVKLA 173
>gi|198449570|ref|XP_002136926.1| GA26866 [Drosophila pseudoobscura pseudoobscura]
gi|198130667|gb|EDY67484.1| GA26866 [Drosophila pseudoobscura pseudoobscura]
Length = 390
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDI-NKCIKELNGMMV 102
T KVFVG+L + E+R LF YG VVE D++ GFVH+++ D+ + I LNG +
Sbjct: 3 TAKVFVGSLPSGCKPDELRRLFSNYGAVVEADVMNRCGFVHLETSDMADAAIAALNGTLF 62
Query: 103 DGKPMKVVVAG 113
G + VV AG
Sbjct: 63 KGVSI-VVEAG 72
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T K+F+G++ G + +R LF YG VVE DV+ GFV
Sbjct: 3 TAKVFVGSLPSGCKPDELRRLFSNYGAVVEADVMNRCGFV 42
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 12/117 (10%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT----TKVFVGNLSDNTRAPE 60
H E DE R AI+++NG ++ K + + R ++ + T VFV NL + E
Sbjct: 175 HFEKDESARLAIEKVNGMLLEGKKVYVGPFLRRSERSSDSEVKFTNVFVKNLDEAVSDDE 234
Query: 61 VRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
V+ +F +GTV C I+R+ +GF++ + P+ ++ LNG V+ K + V
Sbjct: 235 VKAMFAEHGTVNSCIIMRDDEGKSKGFGFINFEEPEQAASAVQALNGKDVNCKELYV 291
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKV 47
+ E E+ +A++ LNG+ VN K L K E S + +
Sbjct: 265 NFEEPEQAASAVQALNGKDVNCKELYVGRAQKKAEREAMLRAKFEELRSERIAKYQGMNL 324
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNG 99
+V NL D+ +R F +GT+ ++ R +GFV SP+ + + E+NG
Sbjct: 325 YVKNLHDDIDDETLRTEFSQFGTITSAKVMVDSAGKSRGFGFVCYASPEEATRAVTEMNG 384
Query: 100 MMVDGKPMKVVVA 112
M+ GKP+ V +A
Sbjct: 385 RMIKGKPIYVALA 397
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 10/77 (12%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDINK-CIKELN 98
+F+ NL + + + F +G ++ C + ++ YGFVH + + + I+++N
Sbjct: 131 IFIKNLDRSVDNKALHDTFSAFGNILSCKVAQDLKGESKGYGFVHFEKDESARLAIEKVN 190
Query: 99 GMMVDGKPMKVVVAGFI 115
GM+++GK KV V F+
Sbjct: 191 GMLLEGK--KVYVGPFL 205
>gi|388509088|gb|AFK42610.1| unknown [Medicago truncatula]
Length = 305
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 16/123 (13%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG LS TR+ ++ +F YG+V + D+ +Y FV P D + L+G +
Sbjct: 10 NTRLYVGRLSSRTRSRDLERVFSRYGSVRDVDMKHDYAFVEFRDPRDADDARYNLDGRDI 69
Query: 103 DGKPMKVVVAGFI--SSILSCLNVIFFIR-----------CGRGGHWSKECPRAGNFRSS 149
DG + V A + S S + + R CG GHW+++C +AG++++
Sbjct: 70 DGSRLIVEFAKGVPRGSRDSRDSREYLGRGPPPGSGRCFNCGIDGHWARDC-KAGDWKNK 128
Query: 150 GCY 152
CY
Sbjct: 129 -CY 130
>gi|351704535|gb|EHB07454.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 281
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 24/149 (16%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNT-PTTK----------------VFV 49
E E+ + A+ E+NG+ +N K + + A + P T P K ++V
Sbjct: 35 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVEPQTEPKHKFEQMKQDTITRYQGVNLYV 94
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K +KE+NG V
Sbjct: 95 KNLDDGIDDEHLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVKEMNGRTV 154
Query: 103 DGKPMKVVVAGFISSILSCLNVIFFIRCG 131
KP+ V +A + L + R
Sbjct: 155 ATKPLYVALAQLKEESPAHLTSQYMQRMA 183
>gi|430813817|emb|CCJ28865.1| unnamed protein product [Pneumocystis jirovecii]
Length = 482
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIK---ELNGMMV 102
K +VGNLS+ R +RE F P+GT++ ++ N G ++ D CIK L+G +
Sbjct: 35 KCYVGNLSNQCRMYHLREKFSPFGTIINVELKPNIGCGFVEFVDPESCIKACHALDGTEL 94
Query: 103 DGKPMKV----VVAGFISSILSCLNVIFFIRCGRGGHWSKECPR 142
G+ ++V V G + L F CG HW+K CP+
Sbjct: 95 FGQTLRVETQKQVYGVRKIVTEKLEGCF--NCGAKNHWAKHCPK 136
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 13/116 (11%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN----TPT-TKVFVGNLSDNTRAPEV 61
E DE + AI ELNG ++N+K + + ++ +P V+V NLS++T +
Sbjct: 178 EQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTEDNL 237
Query: 62 RELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKV 109
+E+F +G + +VR +GFV+ ++P D + +++LNG +D K + V
Sbjct: 238 KEMFGKFGPITSVIVVRADDGKSRCFGFVNFENPDDAARAVEDLNGKKLDDKELYV 293
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 26/134 (19%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKV 47
+ EN ++ A+++LNG+ +++K L K E + T +
Sbjct: 267 NFENPDDAARAVEDLNGKKLDDKELYVGRAQKKSEREMQLKEKFEKSNKETADKNQGTNL 326
Query: 48 FVGNLSDNTRAPE-VRELFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELN 98
++ NL + E ++ELF +GT+ C ++R+ GFV S D ++ + +N
Sbjct: 327 YLKNLDGSVDDDEKLKELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDASRALVAMN 386
Query: 99 GMMVDGKPMKVVVA 112
G MV KP+ V +A
Sbjct: 387 GKMVGSKPLYVALA 400
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 17/113 (15%)
Query: 15 AIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 70
A++ LN VN KP++I + +SRK + +F+ NL + + + F +GT
Sbjct: 99 AMEMLNFTPVNGKPIRIMYSNRDPSSRK---SGAANIFIKNLDKSIDNKALFDTFSAFGT 155
Query: 71 VVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
++ C + + YGFV + + I ELNGM+++ K KV V F+
Sbjct: 156 ILSCKVATEISGESKGYGFVQYEQDESAQNAINELNGMLLNDK--KVYVGPFV 206
>gi|443895761|dbj|GAC73106.1| polyadenylate-binding protein [Pseudozyma antarctica T-34]
Length = 556
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELN-----GQIV----------NEKPLK--IEAATSRKGPNTPTTKV 47
+ EN +E +TA+ EL+ GQ + E+ L+ EAA + K +
Sbjct: 272 NFENHDEAQTAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNL 331
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVR-------NYGFVHIDSPD-INKCIKELNG 99
++ N+ ++ +R+ F P+G + C I+R +GFV +P+ NK + E+NG
Sbjct: 332 YLKNIPESYDDERLRDEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNG 391
Query: 100 MMVDGKPMKVVVA 112
M+D +P+ V +A
Sbjct: 392 KMLDNRPLYVALA 404
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ +P +I S++ P T +F+ NL + +
Sbjct: 96 NAADGERAMEQLNYSLIRNRPCRI--MWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDT 153
Query: 65 FVPYGTVVECDIVRN------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
F +G ++ C + + YGFVH ++ + + IK +NGM+++ K + V
Sbjct: 154 FAAFGNILSCKVATSESGSLGYGFVHYETAEAADAAIKHVNGMLLNDKKVYV 205
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 15/123 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + RK T V+ N+ +
Sbjct: 179 HYETAEAADAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRARFTNVYCKNVDADVT 238
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E +LF YG + C + R+ +GFV+ ++ D + EL+ G+ + V
Sbjct: 239 DEEFEKLFTKYGKITSCVLQRDEDGKSKGFGFVNFENHDEAQTAVDELHDSDFKGQKLFV 298
Query: 110 VVA 112
A
Sbjct: 299 ARA 301
>gi|195452424|ref|XP_002073347.1| GK14083 [Drosophila willistoni]
gi|194169432|gb|EDW84333.1| GK14083 [Drosophila willistoni]
Length = 447
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDI-NKCIKELNGMMV 102
T KVFVG+L + E+R LF YG VVECD++ GFVH+++ ++ + I LNG+
Sbjct: 3 TAKVFVGSLPPGCKPDELRRLFSNYGAVVECDVMNRCGFVHLENTEMADAAIAALNGIEF 62
Query: 103 DGK 105
G+
Sbjct: 63 KGQ 65
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T K+F+G++ PG + +R LF YG VVECDV+ GFV
Sbjct: 3 TAKVFVGSLPPGCKPDELRRLFSNYGAVVECDVMNRCGFV 42
>gi|115462263|ref|NP_001054731.1| Os05g0162600 [Oryza sativa Japonica Group]
gi|46981336|gb|AAT07654.1| unknown protein [Oryza sativa Japonica Group]
gi|113578282|dbj|BAF16645.1| Os05g0162600 [Oryza sativa Japonica Group]
gi|215693366|dbj|BAG88748.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768462|dbj|BAH00691.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630300|gb|EEE62432.1| hypothetical protein OsJ_17224 [Oryza sativa Japonica Group]
Length = 338
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELN 98
P ++++VG++S TRA ++ LF YG V D+ YGFV P D N +L+
Sbjct: 13 PRGRNSRLYVGHISLRTRAEDLENLFSRYGRVRFVDLKNEYGFVEFSDPRDANDARLDLD 72
Query: 99 GMMVDGKPMKVVVAGFISSILS---------CLNVIFFIRCGRGGHWSKECPRAGNFRSS 149
G DG + V A + L CG GHW + C AG++ ++
Sbjct: 73 GRKYDGSDIIVQFARGVERGLGGSRGYKARPAHGSDHCFNCGMEGHWHRNCT-AGDW-TN 130
Query: 150 GCY 152
CY
Sbjct: 131 RCY 133
>gi|297736448|emb|CBI25319.3| unnamed protein product [Vitis vinifera]
Length = 278
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 25/126 (19%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
+T+++VG LS TR+ ++ +LF YG V + D+ ++ FV P D + LNG
Sbjct: 42 STRLYVGRLSSRTRSRDLEDLFSRYGRVRDVDMKHDFAFVEFSDPRDADDARYSLNGRDF 101
Query: 103 DGKPMKVVVAGFISSILS----------------CLNVIFFIRCGRGGHWSKECPRAGNF 146
DG + V A C N CG GHW+++C +AG++
Sbjct: 102 DGSRIIVEFAKGGPRGPGGSREYLGRGPPPGSGRCFN------CGIDGHWARDC-KAGDW 154
Query: 147 RSSGCY 152
++ CY
Sbjct: 155 KNK-CY 159
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N D+
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGDDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++R++F YG + ++ R +GFV + D K + E+NG ++GKP+ V
Sbjct: 204 EEKLRDVFNKYGNAMSIRVMTDDSGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKPIYV 263
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKI---------EAATSRKGPNTPTTK--------VFV 49
E E+ + A+ E+NG+ +N KP+ + +A RK + ++V
Sbjct: 239 ERHEDAQKAVDEMNGKEMNGKPIYVGRAQKKVERQAELKRKFEQMKQDRMTRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMLEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGRPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAP 59
E +E ++A+K LNG ++N+KP+ + ++ + K VFV NLS++T
Sbjct: 171 QYEKEEFAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKARFNNVFVKNLSESTTKE 230
Query: 60 EVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGK 105
++ ++F YG + ++ R +GF++ +SP D + ++ELNG ++ K
Sbjct: 231 DLVKIFSEYGNITSAVVMVGTDGKSRCFGFINFESPDDAVRAVEELNGKKINDK 284
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKP-----------------LKIEAATSRKGPNTPTTKV 47
+ E+ ++ A++ELNG+ +N+K + E + +
Sbjct: 262 NFESPDDAVRAVEELNGKKINDKEWYCGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNL 321
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCIKELNG 99
++ NL D ++RELF +G + C ++R+ GFV + + ++ I E+NG
Sbjct: 322 YLKNLDDGISDDQLRELFSTFGKITSCKVMRDQNGVSKGSGFVAFSTREEASQAITEMNG 381
Query: 100 MMVDGKPMKVVVA 112
M+ GKP+ V A
Sbjct: 382 KMLSGKPLYVAFA 394
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 17/118 (14%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAP 59
+ N + A++ LN +N KP+++ + ++ R G + +F+ NL
Sbjct: 84 NFSNPMDAARALEMLNFVPLNNKPIRVMYSNRDPSSRRSG----SANIFIKNLDKTIDNK 139
Query: 60 EVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 109
+ + F +G ++ C + + +GFV + + + +K LNGM+++ KP+ V
Sbjct: 140 TLHDTFSAFGAILSCKVATDDMGQSKGFGFVQYEKEEFAQSAMKSLNGMLINDKPVYV 197
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 93
PTT ++VG+L + ++ ELF G VV + R+ Y +V+ +P D +
Sbjct: 35 PTTSLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMDAARA 94
Query: 94 IKELNGMMVDGKPMKVV 110
++ LN + ++ KP++V+
Sbjct: 95 LEMLNFVPLNNKPIRVM 111
>gi|116791032|gb|ABK25831.1| unknown [Picea sitchensis]
gi|224284468|gb|ACN39968.1| unknown [Picea sitchensis]
Length = 316
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 15/122 (12%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG LS TR ++ +LF YG V + D+ ++ F+ P D ++ LNG +
Sbjct: 10 NTRLYVGRLSSRTRTRDLEDLFNRYGRVRDVDLKHDFAFIEFSDPRDADEARYYLNGRDL 69
Query: 103 DGKPMKVVVAGFISSILSCLNVIFFI------------RCGRGGHWSKECPRAGNFRSSG 150
DG + V A + ++ CG GHW+++C +AG++++
Sbjct: 70 DGSRIVVEFARGGPRGAAGGRTREYLGRGPPPGSGRCFNCGNDGHWARDC-KAGDWKNK- 127
Query: 151 CY 152
CY
Sbjct: 128 CY 129
>gi|116788860|gb|ABK25029.1| unknown [Picea sitchensis]
Length = 316
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 15/122 (12%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG LS TR ++ +LF YG V + D+ ++ F+ P D ++ LNG +
Sbjct: 10 NTRLYVGRLSSRTRTRDLEDLFNRYGRVRDVDLKHDFAFIEFSDPRDADEARYYLNGRDL 69
Query: 103 DGKPMKVVVAGFISSILSCLNVIFFI------------RCGRGGHWSKECPRAGNFRSSG 150
DG + V A + ++ CG GHW+++C +AG++++
Sbjct: 70 DGSRIVVEFARGGPRGAAGGRTREYLGRGPPPGSGRCFNCGNDGHWARDC-KAGDWKNK- 127
Query: 151 CY 152
CY
Sbjct: 128 CY 129
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 59
+N+E ++AI +LNG ++N+K P + T V+V NLS+ T
Sbjct: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTED 233
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGK 105
+++++F +G + ++R+ +GFV+ D P D + ++ LNG D K
Sbjct: 234 DLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK 287
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 16/103 (15%)
Query: 18 ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV 77
EL G+ E+ LK E A +G N ++V NL D+ +++ELF +GT+ C ++
Sbjct: 303 ELKGKF--EQSLK-ETADKFEGLN-----LYVKNLDDSISDDKLKELFSEFGTITSCKVM 354
Query: 78 RN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
R+ GFV + + +K + E+NG MV KP+ V +A
Sbjct: 355 RDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFV 66
E A+ ELN +N KP++I + T RK + +F+ NL + + + F
Sbjct: 93 EATRALDELNFTPLNGKPIRIMYSYRDPTIRK---SGAGNIFIKNLDKSIDNKALHDTFS 149
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + R YGFV D+ + K I +LNGM+++ K +V V F+
Sbjct: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK--QVFVGPFL 204
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 13/109 (11%)
Query: 10 EEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
E ++AIK LNG ++N+KP+ + + T VFV NLS++T ++ ++
Sbjct: 178 EAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKI 237
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGK 105
F YG + I+ R +GF++ SP D + ++ELNG ++ K
Sbjct: 238 FGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDK 286
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 17/118 (14%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAP 59
+ N + A++ LN +N KP+++ + ++ R G + +F+ NL
Sbjct: 86 NFNNPVDAARALELLNFAPLNGKPIRVMYSNRDPSSRRSG----SANIFIKNLDKAIDHK 141
Query: 60 EVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 109
+ + F +G ++ C + + +GFV D + + IK LNGM+++ KP+ V
Sbjct: 142 TLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYV 199
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 27/128 (21%)
Query: 10 EEGRTAIKELNGQIVNEKP-----------------LKIEAATSRKGPNTPTTKVFVGNL 52
++ A++ELNG+ +N+K + E + +++ NL
Sbjct: 269 DDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNL 328
Query: 53 SDNTRAPEVRELFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCIKELNGMMVDG 104
D+ ++ ELF YG + C I+R+ GFV + P I + E+NG M+ G
Sbjct: 329 DDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTLPFIQ--LTEMNGKMISG 386
Query: 105 KPMKVVVA 112
KP+ V A
Sbjct: 387 KPLYVAFA 394
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 13/109 (11%)
Query: 10 EEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
E ++AIK LNG ++N+KP+ + + T VFV NLS++T ++ ++
Sbjct: 178 EAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKI 237
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGK 105
F YG + I+ R +GF++ SP D + ++ELNG ++ K
Sbjct: 238 FGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDK 286
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 10 EEGRTAIKELNGQIVNEKP-----------------LKIEAATSRKGPNTPTTKVFVGNL 52
++ A++ELNG+ +N+K + E + +++ NL
Sbjct: 269 DDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNL 328
Query: 53 SDNTRAPEVRELFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCIKELNGMMVDG 104
D+ ++ ELF YG + C I+R+ GFV + + ++ + E+NG M+ G
Sbjct: 329 DDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISG 388
Query: 105 KPMKVVVA 112
KP+ V A
Sbjct: 389 KPLYVAFA 396
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 17/118 (14%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAP 59
+ N + A++ LN +N KP+++ + ++ R G + +F+ NL
Sbjct: 86 NFNNPVDAARALELLNFAPLNGKPIRVMYSNRDPSSRRSG----SANIFIKNLDKAIDHK 141
Query: 60 EVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 109
+ + F +G ++ C + + +GFV D + + IK LNGM+++ KP+ V
Sbjct: 142 TLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYV 199
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 13/109 (11%)
Query: 10 EEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
E ++AIK LNG ++N+KP+ + + T VFV NLS++T ++ ++
Sbjct: 178 EAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKI 237
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGK 105
F YG + I+ R +GF++ SP D + ++ELNG ++ K
Sbjct: 238 FGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDK 286
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 10 EEGRTAIKELNGQIVNEKP-----------------LKIEAATSRKGPNTPTTKVFVGNL 52
++ A++ELNG+ +N+K + E + +++ NL
Sbjct: 269 DDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNL 328
Query: 53 SDNTRAPEVRELFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCIKELNGMMVDG 104
D+ ++ ELF YG + C I+R+ GFV + + ++ + E+NG M+ G
Sbjct: 329 DDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISG 388
Query: 105 KPMKVVVA 112
KP+ V A
Sbjct: 389 KPLYVAFA 396
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 17/118 (14%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAP 59
+ N + A++ LN +N KP+++ + ++ R G + +F+ NL
Sbjct: 86 NFNNPVDAARALELLNFAPLNGKPIRVMYSNRDPSSRRSG----SANIFIKNLDKAIDHK 141
Query: 60 EVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 109
+ + F +G ++ C + + +GFV D + + IK LNGM+++ KP+ V
Sbjct: 142 TLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYV 199
>gi|255085602|ref|XP_002505232.1| predicted protein [Micromonas sp. RCC299]
gi|226520501|gb|ACO66490.1| predicted protein [Micromonas sp. RCC299]
Length = 211
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 19/122 (15%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT----------TKVFVGNLSDNTRAPE 60
E A K LNG +V K + + + P P K++V + D+ RA E
Sbjct: 86 EEAIAAKALNGHVVEGKSIDVRLKAEPRAPREPVNAPVAPVNDDAKLYVAYMPDHYRAEE 145
Query: 61 VRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVVV 111
++ L PYG + ++ R +GF + D I+ LNG M+DGK + V +
Sbjct: 146 LKMLLQPYGLPSDVRVITDRETGRSRGFGFAQMMDEQQAMAAIQGLNGQMLDGKTLVVRI 205
Query: 112 AG 113
AG
Sbjct: 206 AG 207
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---------RNYGFVHIDSPDIN 91
N K++VG+L A + E+F P+G V++ D++ + + FV +P+
Sbjct: 29 NDDAAKLYVGHLPSTMNAERMLEMFKPFGRVLQIDVIPDRERQLSCKGFAFVLFSTPEEA 88
Query: 92 KCIKELNGMMVDGKPMKV 109
K LNG +V+GK + V
Sbjct: 89 IAAKALNGHVVEGKSIDV 106
>gi|256085695|ref|XP_002579049.1| rna binding motif protein 4lark [Schistosoma mansoni]
gi|353228730|emb|CCD74901.1| putative rna binding motif protein 4,lark [Schistosoma mansoni]
Length = 286
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
K+FVGNL+ ++ ++R+ F +G V ECD+V NYGFVH++ + I+ L ++DG
Sbjct: 3 KIFVGNLNPESKPSDLRKKFEAFGKVTECDVVNNYGFVHMEKESEAEAAIEGLQNAILDG 62
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GN+NP + +R FE +GKV ECDVV NYGFV
Sbjct: 3 KIFVGNLNPESKPSDLRKKFEAFGKVTECDVVNNYGFV 40
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 13/109 (11%)
Query: 10 EEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
E ++AIK LNG ++N+KP+ + + T VFV NLS++T ++ ++
Sbjct: 177 EAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKI 236
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGK 105
F YG + I+ R +GF++ SP D + ++ELNG ++ K
Sbjct: 237 FGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDK 285
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 10 EEGRTAIKELNGQIVNEKP-----------------LKIEAATSRKGPNTPTTKVFVGNL 52
++ A++ELNG+ +N+K + E + +++ NL
Sbjct: 268 DDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNL 327
Query: 53 SDNTRAPEVRELFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCIKELNGMMVDG 104
D+ ++ ELF YG + C I+R+ GFV + + ++ + E+NG M+ G
Sbjct: 328 DDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISG 387
Query: 105 KPMKVVVA 112
KP+ V A
Sbjct: 388 KPLYVAFA 395
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 15 AIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 69
A++ LN +N KP+++ + ++ R G + +F+ NL + + F +G
Sbjct: 95 ALELLNFAPLNGKPIRVMYSNRDPSSRRSG----SANIFIKNLDKAIDHKTLHDTFSAFG 150
Query: 70 TVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 109
++ C + + +GFV D + + IK LNGM+++ KP+ V
Sbjct: 151 NILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYV 198
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 24/132 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV-------- 47
+ E EE + A+ ++NG+ +N +K L+ ++ RK +V
Sbjct: 237 NFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNL 296
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGM 100
+V NL D +R+ F PYGT+ ++ + +GFV SP + K + E+NG
Sbjct: 297 YVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 101 MVDGKPMKVVVA 112
+V KP+ V +A
Sbjct: 357 IVSTKPLYVALA 368
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +++ +P++I S++ P + VF+ NL D+ + + F
Sbjct: 64 DAERALDTMNFEVIKGRPVRI--MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V R +GFVH ++ + + I+ +NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSRGHGFVHFETQEAATRAIETMNGMLLNDR--KVFVGHFKS 175
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+ +NG ++N++ + + SRK T V++ N D+
Sbjct: 144 HFETQEAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
+RE+F +G + ++ + +GFV+ + + K + ++NG ++G+
Sbjct: 204 DNRLREIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGR 259
>gi|311771545|ref|NP_001185774.1| RBM14-RBM4 protein isoform 1 [Homo sapiens]
gi|165928937|gb|ABY74511.1| transcriptional coactivator CoAZ [Homo sapiens]
Length = 339
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 60/138 (43%), Gaps = 28/138 (20%)
Query: 5 HMENDEEGRTAIKELNGQIVNE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G + + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRP-LNTWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLN 123
LF G V+ECD+V+ M V ++ A + C
Sbjct: 98 LFERRGRVIECDVVKG------------------KRMHVQLSTSRLRTAPGMGDQSGC-- 137
Query: 124 VIFFIRCGRGGHWSKECP 141
RCG+ GHWSKECP
Sbjct: 138 ----YRCGKEGHWSKECP 151
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 5/54 (9%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 341
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112
>gi|440803033|gb|ELR23947.1| hypothetical protein ACA1_075260 [Acanthamoeba castellanii str.
Neff]
Length = 178
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDGK 105
V+VG LS TR ++ + F YG ++ D+ Y F+ DS D + ++ ++G +DG
Sbjct: 8 VYVGRLSSRTRERDLEDAFSKYGRIIRLDMKAGYAFIEYNDSRDADDAVRGMDGNDLDG- 66
Query: 106 PMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKEC---PRAGN 145
++ V C + CG+ GHW+++C PR G+
Sbjct: 67 -ARISVEPSHRGEGRCFS------CGKEGHWARDCREGPRGGS 102
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N D
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++RELF YG + ++ R +GFV + D K + E+NG ++GK M V
Sbjct: 204 DEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYV 263
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFV 49
E E+ + A+ E+NG+ +N K + + A + T + ++V
Sbjct: 239 ERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGQPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|388495254|gb|AFK35693.1| unknown [Lotus japonicus]
Length = 300
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 32/133 (24%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG LS TR+ ++ +F YG V + D+ R+Y FV P D + L+G V
Sbjct: 10 NTRLYVGRLSSRTRSRDLERVFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYNLDGRDV 69
Query: 103 DGKPMKVVVAGFISSILS-----------------------CLNVIFFIRCGRGGHWSKE 139
DG + V A + C N CG GHW+++
Sbjct: 70 DGSRLIVEFAKGVPRGSREGGGGRDRDREYMGRGPPPGSGRCFN------CGIDGHWARD 123
Query: 140 CPRAGNFRSSGCY 152
C +AG++++ CY
Sbjct: 124 C-KAGDWKNK-CY 134
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N D
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++RELF YG + ++ R +GFV + D K + E+NG ++GK M V
Sbjct: 204 DEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYV 263
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFV 49
E E+ + A+ E+NG+ +N K + + A + T + ++V
Sbjct: 239 ERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGQPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|145552234|ref|XP_001461793.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124429629|emb|CAK94420.1| unnamed protein product [Paramecium tetraurelia]
Length = 186
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 44 TTKVFVGNLSDNTRAPE--VRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELNGM 100
+ ++FV S + E VRE+F YG+V E +Y F+ + D K + E+NG
Sbjct: 6 SNQLFVAGYSRSKVQDEKDVREIFRKYGSVKEVAYKGSYSFITFSNEDEAKEALTEMNGA 65
Query: 101 MVDGKPMKVVVAGFISSILSCLNVIFF-IRCGRGGHWSKECPRA 143
+G+ +KV V + N +CG+GGHW+++CP+
Sbjct: 66 TYNGQKLKVDVVDNRKGRRNGPNESDECFKCGKGGHWARDCPKG 109
>gi|428185217|gb|EKX54070.1| hypothetical protein GUITHDRAFT_53822, partial [Guillardia theta
CCMP2712]
Length = 80
Score = 54.3 bits (129), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 9/74 (12%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIK 95
T V+VG L + ++R LF +G +V C+++ RN+GFVH P D I+
Sbjct: 5 TNVYVGGLPPSYDDLDLRNLFKQFGEIVNCNVLKDKNTGLSRNFGFVHFTKPGDAYAAIQ 64
Query: 96 ELNGMMVDGKPMKV 109
+NGM VDGK ++V
Sbjct: 65 SMNGMQVDGKTLQV 78
>gi|359486310|ref|XP_002281756.2| PREDICTED: uncharacterized protein LOC100251921 [Vitis vinifera]
Length = 304
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
+T+++VG LS TR+ ++ +LF YG V + D+ ++ FV P D + LNG
Sbjct: 10 STRLYVGRLSSRTRSRDLEDLFSRYGRVRDVDMKHDFAFVEFSDPRDADDARYSLNGRDF 69
Query: 103 DGKPMKVVVAGFISSILSCLNVIF----------FIRCGRGGHWSKECPRAGNFRSSGCY 152
DG + V A CG GHW+++C +AG++++ CY
Sbjct: 70 DGSRIIVEFAKGGPRGPGGSREYLGRGPPPGSGRCFNCGIDGHWARDC-KAGDWKNK-CY 127
>gi|256085697|ref|XP_002579050.1| rna binding motif protein 4lark [Schistosoma mansoni]
gi|353228729|emb|CCD74900.1| putative rna binding motif protein 4,lark [Schistosoma mansoni]
Length = 244
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
K+FVGNL+ ++ ++R+ F +G V ECD+V NYGFVH++ + I+ L ++DG
Sbjct: 3 KIFVGNLNPESKPSDLRKKFEAFGKVTECDVVNNYGFVHMEKESEAEAAIEGLQNAILDG 62
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GN+NP + +R FE +GKV ECDVV NYGFV
Sbjct: 3 KIFVGNLNPESKPSDLRKKFEAFGKVTECDVVNNYGFV 40
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 24/132 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV-------- 47
+ E EE + A+ ++NG+ +N +K L+ ++ RK +V
Sbjct: 237 NFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNL 296
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGM 100
+V NL D +R+ F PYGT+ ++ + +GFV SP + K + E+NG
Sbjct: 297 YVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 101 MVDGKPMKVVVA 112
+V KP+ V +A
Sbjct: 357 IVSTKPLYVALA 368
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 14/122 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ + + A+ +N +++ +P++I S++ P + VF+ NL D+ +
Sbjct: 58 NFQQPADAERALDTMNFEVIKGRPVRI--MWSQRDPGLRKSGVGNVFIKNLDDSIDNKAL 115
Query: 62 RELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGF 114
+ F +G ++ C +V R +GFVH ++ + + I+ +NGM+++ + KV V F
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEAATRAIQTMNGMLLNDR--KVFVGHF 173
Query: 115 IS 116
S
Sbjct: 174 KS 175
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+ +NG ++N++ + + SRK T V++ N D+
Sbjct: 144 HFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
+RE+F +G + ++ + +GFV+ + + K + ++NG ++G+
Sbjct: 204 DNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGR 259
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 61/114 (53%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAP 59
+N+E + AI +LNG ++N+K + + ++ + K V+V NLS+ T
Sbjct: 163 QFDNEESAKNAIDKLNGMLLNDKQVYVGPFLRKQERESAIDKATFNNVYVKNLSETTTEE 222
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGK 105
+++++F YGT+ ++R+ +GFV+ ++P D + ++ LNG D K
Sbjct: 223 DLKKIFGEYGTITSAVVMRDGNGKSRCFGFVNFENPDDAAQSVEALNGKTFDEK 276
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR-------KGPNTPTTK----------V 47
+ EN ++ +++ LNG+ +EK + A + KG T K +
Sbjct: 254 NFENPDDAAQSVEALNGKTFDEKEWYVGKAQKKSEREVELKGRFEQTLKETVDKFQGLNL 313
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
+V NL D+ +++ELF +GT+ C ++R+ GFV + + ++ + E+NG
Sbjct: 314 YVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGVSRGSGFVAFSTAEEASRALTEMNG 373
Query: 100 MMVDGKPMKVVVA 112
MV KP+ V +A
Sbjct: 374 KMVVSKPLYVALA 386
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDS-PDINKCIK 95
T ++VG+L N ++ +LF +G VV + R+ YG+V+ ++ D + I+
Sbjct: 29 TSLYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQAIE 88
Query: 96 ELNGMMVDGKPMKVV 110
LN V+GKP++++
Sbjct: 89 VLNFTPVNGKPIRIM 103
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 24/129 (18%)
Query: 8 NDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVG 50
N + R A+ E+NG+ +N +K L+ + RK ++ +V
Sbjct: 240 NHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVK 299
Query: 51 NLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVD 103
NL D+ ++R+ F PYGT+ ++ R +GFV SP + K + E+NG +V
Sbjct: 300 NLDDSIDDEKLRKEFAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVS 359
Query: 104 GKPMKVVVA 112
KP+ V +A
Sbjct: 360 TKPLYVALA 368
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 60/112 (53%), Gaps = 14/112 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ +N +++ +P++I S++ P + +F+ N+ ++ + + F +G +
Sbjct: 68 ALDTMNYEVIKGRPIRI--MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNI 125
Query: 72 VECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+ C +V + YGFVH ++ + N+ I+ +NGM+++ + KV V F S
Sbjct: 126 LSCKVVCDENGSKGYGFVHFETQEAANRAIETMNGMLLNDR--KVFVGHFKS 175
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+ +NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDID 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
+ +++ +F +G + ++ R +GFV+ ++ D + + E+NG ++G+ + V
Sbjct: 204 SEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYV 263
>gi|198422109|ref|XP_002123332.1| PREDICTED: similar to poly A binding protein, cytoplasmic 1 b,
partial [Ciona intestinalis]
Length = 500
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 20/108 (18%)
Query: 17 KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 76
+EL GQ +K +I+ +G N ++V NL DN E+RE F YGT+ I
Sbjct: 122 QELRGQYEQQKQERIQRF---QGVN-----LYVKNLDDNVTDDELREAFATYGTITSAKI 173
Query: 77 V-----------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
+ R +GFV SP + K + E+NG +V KP+ V +A
Sbjct: 174 MSDGECSTGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 221
>gi|145546793|ref|XP_001459079.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426902|emb|CAK91682.1| unnamed protein product [Paramecium tetraurelia]
Length = 192
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 45 TKVFVGNLSDN--TRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMM 101
++FV S + T +V+E+F Y +V E +Y F+ +S + + +KE NGM
Sbjct: 7 NQLFVAGYSRSKVTDERDVKEIFRKYSSVKEVAYKGSYSFITFNSENEAQEALKETNGMT 66
Query: 102 VDGKPMKV-VVAGFISSILSCLNVIFFIRCGRGGHWSKECP 141
G+ +KV +V S + +C +GGHW+++CP
Sbjct: 67 YKGQKLKVDIVDNRKSRKTGPSDSDLCFKCNKGGHWARDCP 107
>gi|448878405|gb|AGE46165.1| arginine/serine-rich splicing factor RS2Z37 transcript I
[Physcomitrella patens subsp. patens]
Length = 331
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 14/126 (11%)
Query: 39 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKE-L 97
GP+ T+++VG LS TR+ ++ +LF YG V + D+ ++ FV + +
Sbjct: 37 GPDAGATRLYVGRLSTRTRSRDLEDLFAKYGRVRDVDVKHDFAFVEFADARDADDARHYV 96
Query: 98 NGMMVDGKPMKVVVAGFISSILSCLNVIFFIR-----------CGRGGHWSKECPRAGNF 146
NG DG + V A S + R CG GHW+++C +AG++
Sbjct: 97 NGKDFDGNRLIVEFARRGPRGASGGAREYLGRGPPPGTGRCYNCGNDGHWARDC-KAGDW 155
Query: 147 RSSGCY 152
R CY
Sbjct: 156 RDK-CY 160
>gi|336374485|gb|EGO02822.1| hypothetical protein SERLA73DRAFT_70307 [Serpula lacrymans var.
lacrymans S7.3]
Length = 520
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMVD 103
KV+VG L ++TR ++R F G++V ++ YGFV D+ D + + + N
Sbjct: 143 NKVYVGGLPEHTRQEDLRSCFGKIGSIVNVELKVGYGFVEFDTKDAAEESVAKYNEGHFM 202
Query: 104 GKPMKVVVA---GFISSILSCLNVIFFIRCGRGGHWSKECP 141
G ++V ++ G S F +CG+ GHW++ECP
Sbjct: 203 GNKIRVEISHGGGRTSKHSGDPGACF--KCGQTGHWARECP 241
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 25/132 (18%)
Query: 6 MENDEEGRTAIKELNGQIVNEK-----------------PLKIEAATSRKGPNTPTTKVF 48
E+ E +A++ L+G +EK K EA + ++
Sbjct: 257 FESPEGAASAVENLDGYTEDEKTWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLY 316
Query: 49 VGNLSDNTRAPEVRELFVPYGTVVECDIVRNY-------GFVHIDSPD-INKCIKELNGM 100
+ NL + T ++RELF +GT+ C ++R+ FV SPD + + E+NG
Sbjct: 317 IKNLEEGTDDEKLRELFNEFGTITSCRVMRDASGASRGSAFVAFSSPDEATRAVTEMNGK 376
Query: 101 MVDGKPMKVVVA 112
MV KP+ V +A
Sbjct: 377 MVGAKPLYVALA 388
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 59
E E + AI +NG +N+K P + A S +G V+V NLS+N
Sbjct: 166 QFETAEAAQAAIDNVNGMELNDKQVYVGPFQRRADRSTQG-EAKFNNVYVKNLSENLSDE 224
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVV 111
++RE F +G V C I+++ +GFV +SP+ ++ L+G D K V
Sbjct: 225 KLREKFAEHGAVTSCVIMKDEEGKSKGFGFVCFESPEGAASAVENLDGYTEDEKTWVVCR 284
Query: 112 A 112
A
Sbjct: 285 A 285
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAP 59
+ ++ + AI LN Q++N KP+++ + A R G +F+ NL
Sbjct: 79 NFQSSSDAAHAIDVLNFQVINGKPIRVLYSQRDPAVRRSG----VGNIFIKNLDKAIDNK 134
Query: 60 EVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 109
+ + F +GT+ + + YGFV ++ + + I +NGM ++ K + V
Sbjct: 135 ALLDTFAQFGTITSAKVAMDSAGNSKGYGFVQFETAEAAQAAIDNVNGMELNDKQVYV 192
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 24/129 (18%)
Query: 8 NDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVG 50
N + R A+ E+NG+ +N +K L+ + RK ++ +V
Sbjct: 240 NHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVK 299
Query: 51 NLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVD 103
NL D+ ++R+ F PYGT+ ++ R +GFV SP + K + E+NG +V
Sbjct: 300 NLDDSIDDEKLRKEFAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVS 359
Query: 104 GKPMKVVVA 112
KP+ V +A
Sbjct: 360 TKPLYVALA 368
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 60/112 (53%), Gaps = 14/112 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ +N +++ +P++I S++ P + +F+ N+ ++ + + F +G +
Sbjct: 68 ALDTMNYEVIKGRPIRI--MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNI 125
Query: 72 VECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+ C +V + YGFVH ++ + N+ I+ +NGM+++ + KV V F S
Sbjct: 126 LSCKVVCDENGSKGYGFVHFETQEAANRAIETMNGMLLNDR--KVFVGHFKS 175
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+ +NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDID 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
+ +++ +F +G + ++ R +GFV+ ++ D + + E+NG ++G+ + V
Sbjct: 204 SEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYV 263
>gi|9843663|emb|CAC03605.1| splicing factor RSZ33 [Arabidopsis thaliana]
Length = 290
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 22/130 (16%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG LS TR ++ LF YG V + D+ R+Y FV P D + L+G
Sbjct: 10 NTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDF 69
Query: 103 DGKPMKVVVA-------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSS 149
DG + V + G C N CG GHW+++C AG++++
Sbjct: 70 DGSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFN------CGVDGHWARDCT-AGDWKNK 122
Query: 150 GCYCKSKSSH 159
CY + H
Sbjct: 123 -CYRCGERGH 131
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 24/129 (18%)
Query: 8 NDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVG 50
N EE + A+ E+NG+ VN +K ++ + RK ++ +V
Sbjct: 240 NHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVK 299
Query: 51 NLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVD 103
NL D +R+ F PYGT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 300 NLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVS 359
Query: 104 GKPMKVVVA 112
KP+ V +A
Sbjct: 360 TKPLYVALA 368
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +++ +P++I S++ P + VF+ NL ++ + + F
Sbjct: 64 DAERALDTMNFEVIKGRPIRI--MWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V R YGFVH ++ + N+ I+ +NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDR--KVFVGHFKS 175
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+ +NG ++N++ + + SR+ T V++ N ++
Sbjct: 144 HFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGK 105
+RE+F +G + ++ R +GFV+ + + K + E+NG V+G+
Sbjct: 204 DKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGR 259
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 24/132 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV-------- 47
+ E EE + A+ ++NG+ +N +K L+ ++ RK +V
Sbjct: 237 NFEKHEEAQKAVADMNGKEINGRLLYVGRAQKRLERQSELKRKFEQMKQERVNRYQGVNL 296
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGM 100
+V NL D +R+ F PYGT+ ++ + +GFV SP + K + E+NG
Sbjct: 297 YVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 101 MVDGKPMKVVVA 112
+V KP+ V +A
Sbjct: 357 IVSTKPLYVALA 368
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 14/122 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ + + A+ +N +++ +P++I S++ P + VF+ NL D+ +
Sbjct: 58 NFQQPADAERALDTMNFEVIKGRPIRI--MWSQRDPGLRKSGVGNVFIKNLDDSIDNKAL 115
Query: 62 RELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGF 114
+ F +G ++ C +V R YGFVH ++ + + I+ +NGM+++ + KV V F
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSRGYGFVHFETHEAATRAIETMNGMLLNDR--KVFVGHF 173
Query: 115 IS 116
S
Sbjct: 174 KS 175
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+ +NG ++N++ + + SRK T V++ N D+
Sbjct: 144 HFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEVGARAIEFTNVYIKNFGDDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+RE+F +G + ++ + +GFV+ + + K + ++NG ++G+ + V
Sbjct: 204 DDRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYV 263
>gi|30687109|ref|NP_850280.1| arginine/serine-rich zinc knuckle-containing protein 33
[Arabidopsis thaliana]
gi|75331124|sp|Q8VYA5.1|RSZ33_ARATH RecName: Full=Serine/arginine-rich splicing factor RS2Z33; AltName:
Full=RS-containing zinc finger protein 33;
Short=At-RS2Z33; Short=At-RSZ33
gi|18252179|gb|AAL61922.1| unknown protein [Arabidopsis thaliana]
gi|21386957|gb|AAM47882.1| unknown protein [Arabidopsis thaliana]
gi|51971244|dbj|BAD44314.1| unknown protein [Arabidopsis thaliana]
gi|330254293|gb|AEC09387.1| arginine/serine-rich zinc knuckle-containing protein 33
[Arabidopsis thaliana]
Length = 290
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 22/130 (16%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG LS TR ++ LF YG V + D+ R+Y FV P D + L+G
Sbjct: 10 NTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDF 69
Query: 103 DGKPMKVVVA-------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSS 149
DG + V + G C N CG GHW+++C AG++++
Sbjct: 70 DGSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFN------CGVDGHWARDCT-AGDWKNK 122
Query: 150 GCYCKSKSSH 159
CY + H
Sbjct: 123 -CYRCGERGH 131
>gi|5007080|gb|AAD37807.1| poly(A)-binding protein [Oryza sativa]
Length = 183
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 25/123 (20%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTP-----------------TTKVFVGNLSDNTR 57
A++ELNG+ ++K + A + G T +++ NL D+
Sbjct: 2 AVQELNGKKFDDKEWYVGRAQKKSGREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVD 61
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKV 109
++RELF YGT+ C ++R+ GFV S D ++ + E+N MV KP+ V
Sbjct: 62 DDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYV 121
Query: 110 VVA 112
+A
Sbjct: 122 ALA 124
>gi|326512990|dbj|BAK03402.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 282
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 25/133 (18%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
TK++VG+LS +TR +V LF YG + ++ +YGFV +P D + EL+G V
Sbjct: 38 NTKLYVGHLSTHTRTKDVEYLFGRYGRIRCVELKHDYGFVEFSNPRDADDARYELDGQDV 97
Query: 103 DGKPMKVVVA-------GFISSILS---------CLNVIFFIRCGRGGHWSKECPRAGNF 146
DG + V A G L C N CG GHW+++C AG++
Sbjct: 98 DGSRIIVEFARGTPRGPGGSREYLGRGPPPGSGRCFN------CGIDGHWARDC-NAGDW 150
Query: 147 RSSGCYCKSKSSH 159
++ CY + H
Sbjct: 151 KNK-CYRCGEKGH 162
>gi|194746088|ref|XP_001955516.1| GF16214 [Drosophila ananassae]
gi|190628553|gb|EDV44077.1| GF16214 [Drosophila ananassae]
Length = 391
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDI-NKCIKELNGMMV 102
T KVFVG+L + E+R LF YG+VVECD++ FVH+ + D+ + I LNG
Sbjct: 4 TAKVFVGSLPPGCKPEELRRLFANYGSVVECDVMNRCAFVHLANVDMADAAISALNGTNF 63
Query: 103 DGKPMKVVVAG 113
G+ + VV AG
Sbjct: 64 KGQNI-VVEAG 73
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
T K+F+G++ PG E +R LF YG VVECDV+ FV
Sbjct: 4 TAKVFVGSLPPGCKPEELRRLFANYGSVVECDVMNRCAFV 43
>gi|165928940|gb|ABY74512.1| transcriptional coactivator CoAZ [Mus musculus]
Length = 336
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 60/138 (43%), Gaps = 28/138 (20%)
Query: 5 HMENDEEGRTAIKELNGQIVNE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G + + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVE--MSRPRP-LNTWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLN 123
LF G V+ECD+V+ M V ++ A + C
Sbjct: 98 LFERRGRVIECDVVKG------------------KRMHVQLSTSRLRTAPGMGDQSGC-- 137
Query: 124 VIFFIRCGRGGHWSKECP 141
RCG+ GHWSKECP
Sbjct: 138 ----YRCGKEGHWSKECP 151
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 5/54 (9%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 341
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 35/138 (25%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI----------------------EAATSRKGPNT 42
+ EN E+ A++ LNG+ +++K + EAA +G N
Sbjct: 250 NFENAEDAAKAVEALNGKKIDDKEWFVGKAQKKYEREVELKQRFEQSMKEAADKFQGAN- 308
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCI 94
+++ NL D+ +++ELF P+GT+ C ++R+ GFV +P + ++ +
Sbjct: 309 ----LYIKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRAL 364
Query: 95 KELNGMMVDGKPMKVVVA 112
E+NG +V KP+ V +A
Sbjct: 365 LEMNGKIVVSKPLYVALA 382
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAP 59
+++E + AI++LNG ++N+K + + ++ +T T K VFV NLS+ T
Sbjct: 159 QFDSEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERDTATDKMRFNNVFVKNLSETTTEE 218
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 105
++ + F +GT+ ++R+ +GFV+ + + D K ++ LNG +D K
Sbjct: 219 DLNKTFGEFGTITSIVVMRDGDGKSKCFGFVNFENAEDAAKAVEALNGKKIDDK 272
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 15/119 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVREL 64
N ++ A++ LN +N P+++ S + P + +F+ NL + +
Sbjct: 75 NPQDAARALEMLNFTPLNGSPIRV--MYSHRDPTIRKSGAGNIFIKNLDKAIDHKALHDT 132
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVVVAGFI 115
F +G ++ C + + YGFV DS + K I++LNGM+++ K +V V F+
Sbjct: 133 FSAFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDK--QVYVGPFL 189
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 27 KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN------- 79
+P + A + PN TT ++VG+L + ++ +LF G VV + R+
Sbjct: 9 QPQSVNAGANN--PNFVTTSLYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSL 66
Query: 80 -YGFVHIDSP-DINKCIKELNGMMVDGKPMKVV 110
YG+V+ +P D + ++ LN ++G P++V+
Sbjct: 67 GYGYVNYSNPQDAARALEMLNFTPLNGSPIRVM 99
>gi|157103487|ref|XP_001648003.1| splicing factor, putative [Aedes aegypti]
gi|108880534|gb|EAT44759.1| AAEL003916-PA [Aedes aegypti]
Length = 296
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMM 101
P K+FVG+L T+ E+R LF YG V ECD++ FVH+ +PD ++ I+ L+
Sbjct: 3 PRNKIFVGSLPPATKPEEIRRLFETYGVVTECDVMNRCAFVHMQTPDMVDNAIQALHNSN 62
Query: 102 VDGKPMKV 109
G + V
Sbjct: 63 FKGVTINV 70
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+G++ P T E IR LFE YG V ECDV+ FV
Sbjct: 6 KIFVGSLPPATKPEEIRRLFETYGVVTECDVMNRCAFV 43
>gi|157979|gb|AAA03215.1| no-on-transient A product form II [Drosophila melanogaster]
Length = 698
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
Query: 16 IKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE-- 73
++ ++G +P+++ T G N +++VGNL+++ E+RE+F PYG + E
Sbjct: 277 LRSISGPTFELEPVEVPTETKFSGRN----RLYVGNLTNDITDDELREMFKPYGEISEIF 332
Query: 74 CDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFI 128
++ +N+ F+ +D P+ K + L+G M G+ ++V A ++IL N+ F+
Sbjct: 333 SNLDKNFTFLKVDYHPNAEKAKRALDGSMRKGRQLRVRFAP-NATILRVSNLTPFV 387
>gi|115453241|ref|NP_001050221.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|18921322|gb|AAL82527.1|AC084766_13 putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|108708430|gb|ABF96225.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548692|dbj|BAF12135.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|125586437|gb|EAZ27101.1| hypothetical protein OsJ_11032 [Oryza sativa Japonica Group]
gi|215697052|dbj|BAG91046.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215766568|dbj|BAG98727.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAA-------TSRKGPNTPTTKVFVGNLSDNTRA 58
M + EE A+++ NG I++ + L++ + +S++ P +V+VGNLS
Sbjct: 134 MSSVEEVEAAVEQFNGYILDGRSLRVNSGPPPPREQSSQRAPRGEANRVYVGNLSWGVDN 193
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 109
+ LF G V+E ++ R +GFV S ++ + L+G +DG+ ++V
Sbjct: 194 AALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRV 253
Query: 110 VVA 112
VA
Sbjct: 254 TVA 256
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 35/138 (25%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI----------------------EAATSRKGPNT 42
+ EN ++ A++ LNG+ ++K + EAA +G N
Sbjct: 256 NFENADDAARAVEALNGKNFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGAN- 314
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCI 94
++V NL D+ +++ELF P+GT+ C ++R+ GFV +P + ++ +
Sbjct: 315 ----LYVKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGLSRGSGFVAFSTPEEASRAL 370
Query: 95 KELNGMMVDGKPMKVVVA 112
E+NG MV KP+ V +A
Sbjct: 371 LEMNGKMVVSKPLYVTLA 388
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAP 59
+N+E + AI++LNG ++N+K + + ++ + K VFV NLS++T
Sbjct: 165 QFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAADKAKFNNVFVKNLSESTTDD 224
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 105
E++ F +GT+ ++R+ +GFV+ + + D + ++ LNG D K
Sbjct: 225 ELKNTFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKNFDDK 278
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 15/122 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ N ++ A+ LN +N +P++I S + P+ + +F+ NL +
Sbjct: 78 NFSNPQDAARALDVLNFTPLNNRPIRI--MYSHRDPSIRKSGQGNIFIKNLDRAIDHKAL 135
Query: 62 RELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAG 113
+ F +G ++ C + + YGFV D+ + K I++LNGM+++ K +V V
Sbjct: 136 HDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK--QVYVGP 193
Query: 114 FI 115
F+
Sbjct: 194 FL 195
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E DE AIK +NG ++NEK + + +K + T V+V N++
Sbjct: 198 HYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANYTNVYVKNINLEVT 257
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E RELF YG V + R+ +GFV+ + D K ++ELNG G+ + V
Sbjct: 258 EEEFRELFSKYGEVTSSTLARDQEGKSRGFGFVNFSTHDSAAKAVEELNGKEFRGQELYV 317
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 13/110 (11%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 67
+G A++ELN ++ +P +I S++ P T VF+ NL + + F
Sbjct: 117 DGEKALEELNYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAA 174
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+G ++ C + ++ YGFVH ++ + + IK +NGM+++ K + V
Sbjct: 175 FGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYV 224
>gi|62473776|ref|NP_001014747.1| no on or off transient A, isoform C [Drosophila melanogaster]
gi|61677906|gb|AAX52501.1| no on or off transient A, isoform C [Drosophila melanogaster]
Length = 698
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
Query: 16 IKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE-- 73
++ ++G +P+++ T G N +++VGNL+++ E+RE+F PYG + E
Sbjct: 277 LRSISGPTFELEPVEVPTETKFSGRN----RLYVGNLTNDITDDELREMFKPYGEISEIF 332
Query: 74 CDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFI 128
++ +N+ F+ +D P+ K + L+G M G+ ++V A ++IL N+ F+
Sbjct: 333 SNLDKNFTFLKVDYHPNAEKAKRALDGSMRKGRQLRVRFAP-NATILRVSNLTPFV 387
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAP 59
+ +E + AIK LNG ++N+KP+ + + T VFV NLS++T
Sbjct: 168 QYDKEEAAQNAIKSLNGMLINDKPVFVGPFVRKQERDHSFDKTKFNNVFVKNLSESTTKE 227
Query: 60 EVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGK 105
++ ++F YG + ++ R +GF++ ++PD + ++ELNG ++ K
Sbjct: 228 DLLKIFGEYGDITSAVVMIGMDGKSRCFGFINFENPDAASHAVQELNGKKINDK 281
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTP---TTKVFVGNLSDNTRAPEVRELFVPYGTV 71
A++ LN +N KP+++ S + P++ + +F+ NL + E F +GT+
Sbjct: 91 ALEVLNFAALNNKPIRV--MYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTI 148
Query: 72 VECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+ C + + +GFV D + IK LNGM+++ KP+ V
Sbjct: 149 LSCKVAVDEAGQSKGFGFVQYDKEEAAQNAIKSLNGMLINDKPVFV 194
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEK-----------------PLKIEAATSRKGPNTPTTKV 47
+ EN + A++ELNG+ +N+K + E + +
Sbjct: 259 NFENPDAASHAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLNL 318
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY-------GFVHIDS-PDINKCIKELNG 99
++ NL D+ ++ ELF +G + ++R+ GFV + + ++ + E+NG
Sbjct: 319 YLKNLDDSIGDDQLCELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMNG 378
Query: 100 MMVDGKPMKVVVA 112
M+ GKP+ V A
Sbjct: 379 KMISGKPLYVAFA 391
>gi|168229272|ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus]
gi|148703238|gb|EDL35185.1| mCG12357 [Mus musculus]
Length = 370
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN-------TPTTKVFVGNLSDNTR 57
H ++ AI+E+NG+++ E L + SRK T T V++ N D+
Sbjct: 143 HYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKDREAELRDKPTEFTNVYIKNFGDDVD 202
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDINK-CIKELNGMMVDGKPM 107
++RE+F YG + ++++ +GFV DS + K ++++NG ++G+ +
Sbjct: 203 DEKLREVFSKYGQTLSVKVMKDATGKSKGFGFVSFDSHEAAKNAVEDMNGQDINGQTI 260
>gi|24642482|ref|NP_523367.2| no on or off transient A, isoform A [Drosophila melanogaster]
gi|82592514|sp|Q04047.2|NONA_DROME RecName: Full=Protein no-on-transient A; AltName:
Full=Puff-specific protein Bj6
gi|21429172|gb|AAM50305.1| RE58280p [Drosophila melanogaster]
gi|22832362|gb|AAF48597.2| no on or off transient A, isoform A [Drosophila melanogaster]
gi|220948618|gb|ACL86852.1| nonA-PA [synthetic construct]
Length = 700
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
Query: 16 IKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE-- 73
++ ++G +P+++ T G N +++VGNL+++ E+RE+F PYG + E
Sbjct: 277 LRSISGPTFELEPVEVPTETKFSGRN----RLYVGNLTNDITDDELREMFKPYGEISEIF 332
Query: 74 CDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFI 128
++ +N+ F+ +D P+ K + L+G M G+ ++V A ++IL N+ F+
Sbjct: 333 SNLDKNFTFLKVDYHPNAEKAKRALDGSMRKGRQLRVRFAP-NATILRVSNLTPFV 387
>gi|157978|gb|AAA03214.1| no-on-transient A product form I [Drosophila melanogaster]
Length = 700
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
Query: 16 IKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE-- 73
++ ++G +P+++ T G N +++VGNL+++ E+RE+F PYG + E
Sbjct: 277 LRSISGPTFELEPVEVPTETKFSGRN----RLYVGNLTNDITDDELREMFKPYGEISEIF 332
Query: 74 CDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFI 128
++ +N+ F+ +D P+ K + L+G M G+ ++V A ++IL N+ F+
Sbjct: 333 SNLDKNFTFLKVDYHPNAEKAKRALDGSMRKGRQLRVRFAP-NATILRVSNLTPFV 387
>gi|340503359|gb|EGR29956.1| hypothetical protein IMG5_145470 [Ichthyophthirius multifiliis]
Length = 221
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 36 SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFV-HIDSPDINKCI 94
SR+ P +++V N S T +++ F YG++V+ ++ R+Y F+ + D I
Sbjct: 2 SRRNP-----QIYVTNFSSRTNEEDLQYEFKKYGSIVDINMKRSYAFITYDDYHSAEDAI 56
Query: 95 KELNGMMVDGKPMKVVVAGF--ISSILSCLNVIFFIRCGRGGHWSKECPRAGNFR 147
++++ +++GK + V AG I L+ F +CGR GHW+ EC +R
Sbjct: 57 RKMDKAVINGKQILVEPAGLKKIRPRGPQLDDKCF-KCGRRGHWANECDERRRYR 110
>gi|30693839|ref|NP_190918.3| RNA recognition motif and CCHC-type zinc finger domain-containing
protein [Arabidopsis thaliana]
gi|75334513|sp|Q9FYB7.1|RSZ32_ARATH RecName: Full=Serine/arginine-rich splicing factor RS2Z32; AltName:
Full=RS-containing zinc finger protein 32;
Short=At-RS2Z32; Short=At-RSZ32
gi|9795142|emb|CAB67657.2| splicing factor-like protein [Arabidopsis thaliana]
gi|222422875|dbj|BAH19424.1| AT3G53500 [Arabidopsis thaliana]
gi|332645577|gb|AEE79098.1| RNA recognition motif and CCHC-type zinc finger domain-containing
protein [Arabidopsis thaliana]
Length = 284
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 22/123 (17%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG LS TR ++ LF YG V + D+ R+Y FV P D + L+G
Sbjct: 10 NTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDF 69
Query: 103 DGKPMKVVVA-------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSS 149
DG + V + G C N CG GHW+++C AG++++
Sbjct: 70 DGSRITVEASRGAPRGSRDNGSRGPPPGSGRCFN------CGVDGHWARDCT-AGDWKNK 122
Query: 150 GCY 152
CY
Sbjct: 123 -CY 124
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 61/113 (53%), Gaps = 12/113 (10%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK----VFVGNLSDNTRAPE 60
+N+E + AI +LNG ++N+K + + + ++ + K V+V NLS++T +
Sbjct: 171 QFDNEEAAQNAIDKLNGMLLNDKQVYVGHFLRKHERDSASNKKFNNVYVKNLSESTTEED 230
Query: 61 VRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 105
++ +F YG + I+R+ +GFV+ ++ D K ++ LNG +D K
Sbjct: 231 LKNIFGEYGEITSAVIMRDADGKSKCFGFVNFENTDAAAKAVESLNGKKIDDK 283
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 35/138 (25%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI----------------------EAATSRKGPNT 42
+ EN + A++ LNG+ +++K + EA +G N
Sbjct: 261 NFENTDAAAKAVESLNGKKIDDKEWYVGKAQKKSERELELKSQFEQSMKEAVDKYQGVN- 319
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCI 94
+++ NL D+ ++ELF +G + C ++R+ GFV +P + ++ +
Sbjct: 320 ----LYIKNLDDSISDENLKELFSDFGMITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 375
Query: 95 KELNGMMVDGKPMKVVVA 112
E+NG MV KP+ V +A
Sbjct: 376 AEMNGKMVVSKPLYVALA 393
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFV 66
++ A+ LN N KP++I S + P+ + T +F+ NL + + F
Sbjct: 89 QDAARALDILNFTPFNNKPIRI--MYSHRDPSIRKSGTGNIFIKNLDKTIDHKALHDTFS 146
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + R YGFV D+ + I +LNGM+++ K +V V F+
Sbjct: 147 SFGNILSCKVATDSSGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDK--QVYVGHFL 201
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 24/129 (18%)
Query: 8 NDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVG 50
N EE + A+ E+NG+ VN +K ++ + RK ++ +V
Sbjct: 240 NHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVK 299
Query: 51 NLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVD 103
NL D +R+ F PYGT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 300 NLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVS 359
Query: 104 GKPMKVVVA 112
KP+ V +A
Sbjct: 360 TKPLYVALA 368
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +++ +P++I S++ P + VF+ NL D+ + + F
Sbjct: 64 DAERALDTMNFEVIKGRPIRI--MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V R YGFVH ++ + N+ I+ +NGM+++ + KV V F S
Sbjct: 122 FGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDR--KVFVGHFKS 175
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+ +NG ++N++ + + SR+ T V++ N ++
Sbjct: 144 HFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGK 105
++E+F +G + ++ R +GFV+ + + K + E+NG V+G+
Sbjct: 204 DKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGR 259
>gi|448878298|gb|AGE46112.1| arginine/serine-rich splicing factor R2SZ35 transcript I [Sorghum
bicolor]
Length = 312
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 25/126 (19%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG L+ TR+ ++ LF YG + E ++ R+Y F+ P D + L+G V
Sbjct: 10 NTRLYVGRLAPRTRSRDLEYLFSKYGRIREVELKRDYAFIEFSDPHDADDAQYNLDGREV 69
Query: 103 DGKPMKVVVA----------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNF 146
DG + V A G C N CG GHW+++C +AG++
Sbjct: 70 DGSRIIVEFAKGVPRGSGGSREYMGRGPPPGTGRCFN------CGIDGHWARDC-KAGDW 122
Query: 147 RSSGCY 152
++ CY
Sbjct: 123 KNK-CY 127
>gi|195624410|gb|ACG34035.1| splicing factor, arginine/serine-rich 6 [Zea mays]
gi|448878160|gb|AGE46043.1| arginine/serine-rich splicing factor RS2Z39 transcript I [Zea mays]
Length = 353
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 25/125 (20%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
T+++VG L+ TR+ ++ LF YG + E ++ R+Y F+ D D ++ +L+G VD
Sbjct: 11 TRLYVGRLATRTRSRDLEHLFGRYGRIREVELKRDYAFIEFSDHRDADEARYQLDGRDVD 70
Query: 104 GKPMKVVVA----------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFR 147
G + V A G C N CG GHW+++C +AG+++
Sbjct: 71 GSRIVVESAKGVPRGSGGSREYMGRGPPPGTGRCFN------CGVDGHWARDC-KAGDWK 123
Query: 148 SSGCY 152
+ CY
Sbjct: 124 NK-CY 127
>gi|194893839|ref|XP_001977950.1| GG17959 [Drosophila erecta]
gi|190649599|gb|EDV46877.1| GG17959 [Drosophila erecta]
Length = 672
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
Query: 16 IKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE-- 73
++ ++G +P+++ T G N +++VGNL+++ E+RE+F PYG + E
Sbjct: 259 LRSISGPTFELEPVEVPTETKFSGRN----RLYVGNLTNDITDDELREMFKPYGEISEIF 314
Query: 74 CDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFI 128
++ +N+ F+ +D P+ K + L+G M G+ ++V A ++IL N+ F+
Sbjct: 315 SNLDKNFTFLKVDYHPNAEKAKRALDGSMRKGRQLRVRFAP-NATILRVSNLTPFV 369
>gi|238014292|gb|ACR38181.1| unknown [Zea mays]
gi|413950154|gb|AFW82803.1| hypothetical protein ZEAMMB73_678679 [Zea mays]
gi|448878172|gb|AGE46049.1| arginine/serine-rich splicing factor RS2Z37A transcript I [Zea
mays]
Length = 325
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 25/126 (19%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG LS TR+ ++ LF YG + E ++ R+Y F+ P D + L+G V
Sbjct: 10 NTRLYVGRLSPRTRSRDLEYLFSKYGRIREVELKRDYAFIEFSDPRDADDAQYNLDGRDV 69
Query: 103 DGKPMKVVVA----------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNF 146
DG + V A G C N CG GHW+++C +AG++
Sbjct: 70 DGSRIIVEFAKGVPRGSGGSRDYNGRGPPPGTGRCFN------CGVDGHWARDC-QAGDW 122
Query: 147 RSSGCY 152
++ CY
Sbjct: 123 KNK-CY 127
>gi|72012937|ref|XP_780865.1| PREDICTED: uncharacterized protein LOC575368 [Strongylocentrotus
purpuratus]
Length = 200
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 18/107 (16%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV----RNYGFV-HIDSPDINKCIKELN 98
T ++F+G LS NTR +V ++F YG + C++ Y FV ++D D IK N
Sbjct: 2 TAQLFIGRLSKNTRQRDVEDMFDYYGKMSRCELKFGSGMAYAFVDYVDKRDAEDAIKHEN 61
Query: 99 GMMVDGKPMKVVVA-----GFISSILSCLNVIFFIRCGRGGHWSKEC 140
G ++G+ + V A GF C RCGR GH++++C
Sbjct: 62 GKELNGQSIVVEWARGPKRGFEDD--ECY------RCGRRGHFARDC 100
>gi|224035793|gb|ACN36972.1| unknown [Zea mays]
gi|413950156|gb|AFW82805.1| splicing factor, arginine/serine-rich 6 [Zea mays]
gi|448878164|gb|AGE46045.1| arginine/serine-rich splicing factor RS2Z39 transcript III [Zea
mays]
gi|448878166|gb|AGE46046.1| arginine/serine-rich splicing factor RS2Z39 transcript IV [Zea
mays]
Length = 353
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 25/125 (20%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
T+++VG L+ TR+ ++ LF YG + E ++ R+Y F+ D D ++ +L+G VD
Sbjct: 11 TRLYVGRLATRTRSRDLEHLFGRYGRIREVELKRDYAFIEFSDHRDADEARYQLDGRDVD 70
Query: 104 GKPMKVVVA----------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFR 147
G + V A G C N CG GHW+++C +AG+++
Sbjct: 71 GSRIVVEFAKGVPRGSGGSREYMGRGPPPGTGRCFN------CGVDGHWARDC-KAGDWK 123
Query: 148 SSGCY 152
+ CY
Sbjct: 124 NK-CY 127
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKV 47
+ EN ++ A++ LNG+ ++K + E + P +
Sbjct: 260 NFENPDDAAKAVEGLNGKKFDDKEWYVGKAQKKSEREQELKGRFEQSIKEAADKYPGLNL 319
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
++ NL D +++E+F YGT+ C ++R+ GFV +P + + + E+NG
Sbjct: 320 YLKNLDDTISDEKLKEMFADYGTITSCKVMRDPTGISRGSGFVAFSTPEEATRALGEMNG 379
Query: 100 MMVDGKPMKVVVA 112
M GKP+ V +A
Sbjct: 380 KMFAGKPLYVALA 392
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 21/118 (17%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI---------EAATSRKGPNTPTTKVFVGNLSDN 55
+N+E + AI +LNG ++N+K + + E A S+ T V+V NLS++
Sbjct: 169 QFDNEEAAQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSK----TKFNNVYVKNLSES 224
Query: 56 TRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGK 105
T E+ F YGT+ I+R+ +GFV+ ++P D K ++ LNG D K
Sbjct: 225 TTDEELMINFGEYGTITSALIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKFDDK 282
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEV 61
+ N ++ A+ LN +N + ++I S + P+ + T +F+ NL +
Sbjct: 82 NFSNPQDAARALDVLNFTPLNNRSIRI--MYSHRDPSLRKSGTANIFIKNLDKAIDHKAL 139
Query: 62 RELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAG 113
+ F +G ++ C I + YGFV D+ + I +LNGM+++ K +V V
Sbjct: 140 HDTFSSFGLILSCKIATDASGLSKGYGFVQFDNEEAAQNAIDKLNGMLINDK--QVYVGH 197
Query: 114 FI 115
F+
Sbjct: 198 FL 199
>gi|195479200|ref|XP_002100802.1| GE17267 [Drosophila yakuba]
gi|194188326|gb|EDX01910.1| GE17267 [Drosophila yakuba]
Length = 699
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 63/113 (55%), Gaps = 8/113 (7%)
Query: 19 LNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE--CDI 76
L+G +P+++ T G N +++VGNL+++ E+RE+F PYG + E ++
Sbjct: 281 LSGPTFELEPVEVPTETKFSGRN----RLYVGNLTNDITDDELREMFKPYGEISEIFSNL 336
Query: 77 VRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFI 128
+N+ F+ +D P+ K + L+G M G+ ++V A ++IL N+ F+
Sbjct: 337 DKNFTFLKVDYHPNAEKAKRALDGSMRKGRQLRVRFAP-NATILRVSNLTPFV 388
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 25/131 (19%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFV 49
EN E+ A++ELNG ++ L + EA+ K +F+
Sbjct: 269 ENHEDAAKAVEELNGSQFKDQELFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFI 328
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMM 101
NL D+ +++E F PYG + ++R +GFV +P + K I E N +
Sbjct: 329 KNLDDSIDDEKLKEEFAPYGNITSVRVMRTENGKSRGFGFVCFSTPEEATKAITEKNQQI 388
Query: 102 VDGKPMKVVVA 112
V GKP+ V +A
Sbjct: 389 VAGKPLYVAIA 399
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 15/123 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E+D + AI LNG ++N + + + SRK ++ T ++V N++ T
Sbjct: 174 HFEDDTAAKEAIDALNGMLLNGQEIFVGPHLSRKERDSQLEESKANFTNIYVKNINLETT 233
Query: 58 APEVRELFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
E ELF YG V+ + ++ +GFV ++ D K ++ELNG + + V
Sbjct: 234 DEEFTELFSKYGKVLSAALEKTEDGKLKGFGFVDFENHEDAAKAVEELNGSQFKDQELFV 293
Query: 110 VVA 112
A
Sbjct: 294 SRA 296
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 15/118 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H ++ AI+E+NG+ + + + + SRK + T V++ N D+
Sbjct: 143 HFQSQSAADRAIEEMNGKFLKDCKVFVGRFKSRKDREAELRNKASEFTNVYIKNFGDDMD 202
Query: 58 APEVRELFVPYGTVV-------ECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPM 107
+RE+F YG ++ C R +GFV DS + K ++E+NG V+G+P+
Sbjct: 203 DERLREVFSTYGRILSVKVMTNSCGKSRGFGFVSFDSHEAARKAVEEMNGKEVNGQPI 260
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKG----------PNTPTTKVFV 49
++ E R A++E+NG+ VN +P+ K+E K K+++
Sbjct: 238 DSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQLKKERIRGCQGAKLYI 297
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIVR----NYGFVHI---DSPDINKCIKELNGMMV 102
NL +N ++R+ F +G++ +++ + GF I S D + + +NG ++
Sbjct: 298 KNLDENIDDEKLRKEFSSFGSISRVKVMQEEGQSKGFGLICFSSSEDAARAMTVMNGRIL 357
Query: 103 DGKPMKVVVA 112
KP+ + +A
Sbjct: 358 GSKPLNIALA 367
>gi|388854914|emb|CCF51417.1| probable PAB1-mRNA polyadenylate-binding protein [Ustilago hordei]
Length = 648
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELN-----GQIV----------NEKPLK--IEAATSRKGPNTPTTKV 47
+ E+ EE + A+ EL+ GQ + E+ L+ EAA + K +
Sbjct: 271 NFEDHEEAQKAVDELHDSDFHGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNL 330
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNG 99
++ N+ ++ +RE F P+GT+ C I+ R +GFV P + NK + E+NG
Sbjct: 331 YLKNIPESYDDERLREEFAPFGTITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMNG 390
Query: 100 MMVDGKPMKVVVA 112
M+D +P+ V +A
Sbjct: 391 KMLDNRPLYVALA 403
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ +P +I S++ P T +F+ NL + +
Sbjct: 95 NAADGERAMEQLNYSLIRNRPCRI--MWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDT 152
Query: 65 FVPYGTVVECDIVRN------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFI 115
F +G ++ C + N YGFVH ++ IK +NGM+++ K KV V I
Sbjct: 153 FAAFGNILSCKVATNDTGSLGYGFVHYETAEAAEAAIKHVNGMLLNDK--KVYVGHHI 208
>gi|320166878|gb|EFW43777.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 445
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 9 DEEGRTAIKELNGQIVNEKPLKIEAATS---RKGPNTPTTKVFVGNLSDNTRAPEVRELF 65
DE TA N + ++P +A + R P T ++FVG ++ ++RE F
Sbjct: 94 DEPSLTASNPNNTSLTAQRPAPFNSANNNAQRAPPATLGHRIFVGGINWKGEESDLREFF 153
Query: 66 VPYGTVVECDIV--------RNYGFVHIDSPDINKCIKELNGMMVDGKPMKV 109
GTVVEC I+ + YGFV + +K++ ++ GKP+ +
Sbjct: 154 AKLGTVVECKIIADRVTGASKGYGFVSFSDAHTAEAVKQMQNLVYMGKPLHL 205
>gi|125550950|gb|EAY96659.1| hypothetical protein OsI_18573 [Oryza sativa Indica Group]
Length = 338
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELN 98
P ++++VG++S TRA ++ LF YG V D+ YGFV P D N +L+
Sbjct: 13 PRGRNSRLYVGHISLCTRAEDLENLFSRYGRVRFVDLKNEYGFVEFSDPRDANDARLDLD 72
Query: 99 GMMVDGKPMKVVVAGFISSILS---------CLNVIFFIRCGRGGHWSKECPRAGNFRSS 149
G DG + V A + L CG GHW + C AG++ ++
Sbjct: 73 GRKYDGSDIIVQFARGVERGLGGSRGYKARPAHGSDHCFNCGMEGHWHRNCT-AGDW-TN 130
Query: 150 GCY 152
CY
Sbjct: 131 RCY 133
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP-------NTPTTKVFVGNLSDNTR 57
H E DE R AI+++NG ++N K + + SR+ V+V NLS+ T
Sbjct: 143 HFETDEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLDLGMRKFNNVYVKNLSEETD 202
Query: 58 APEVRELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMK 108
++RE+F YG ++ ++ + +GFV ++P+ K ++ LNG GK +
Sbjct: 203 DEKLREIFELYGKIISAKVMIDDSSRKSKQFGFVSFENPEAAKKAVEALNGNDNAGKILY 262
Query: 109 V 109
V
Sbjct: 263 V 263
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQ-------IVNEKPLKIEAATSRKGPNTPTTK----------VFV 49
EN E + A++ LNG V KIE K K +FV
Sbjct: 239 ENPEAAKKAVEALNGNDNAGKILYVGRAQTKIERQAELKEKFERIRKERINRYQGVNLFV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL DN +R+ F +GT+ ++ + +GFV+ SP + K I E+N ++
Sbjct: 299 KNLDDNIDDKRLRKEFAQFGTITSAKVMTENGRSKGFGFVYFSSPEEATKAIVEMNEKII 358
Query: 103 DGKPMKVVVA 112
+ +P+ V +A
Sbjct: 359 EARPLYVALA 368
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKV 47
+ E+ +E A+++LNG+ ++K K E T +
Sbjct: 350 NFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNL 409
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
++ NL D ++RELF +GT+ C ++R+ GFV S D ++ + E+N
Sbjct: 410 YLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNN 469
Query: 100 MMVDGKPMKVVVA 112
MV KP+ V +A
Sbjct: 470 KMVGNKPLYVALA 482
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 60/106 (56%), Gaps = 13/106 (12%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEA-ATSRKGPNTPTT----KVFVGNLSDNTRAPEV 61
E DE AI++LNG ++N+K + + ++ N+P + V+V NL++ T ++
Sbjct: 261 ERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDL 320
Query: 62 RELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNG 99
+E+F +GT+ ++R+ +GFV+ +SPD +++LNG
Sbjct: 321 KEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNG 366
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 15/112 (13%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 71
A++ LN +N +P++I S + P+ + T +F+ NL + + + F +G +
Sbjct: 182 ALEMLNFTPINGRPIRI--MYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNI 239
Query: 72 VECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+ C + + YGFV + + + I++LNGM+++ K KV V F+
Sbjct: 240 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDK--KVYVGPFV 289
Score = 38.1 bits (87), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 93
P T ++VG+L + + ++ ++F G VV + R+ Y +V+ ++P D +
Sbjct: 123 PATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARA 182
Query: 94 IKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFIR 129
++ LN ++G+P++++ + S+ FI+
Sbjct: 183 LEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIK 218
>gi|68035567|gb|AAY84873.1| alternative splicing regulator [Triticum aestivum]
Length = 333
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 15/122 (12%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
+++VG LS TR+ ++ LF YG + E ++ R+Y F+ P D ++ L+G V
Sbjct: 10 NARLYVGRLSSRTRSRDLEYLFSKYGRIREVELKRDYAFIEYSDPRDADEARYNLDGRDV 69
Query: 103 DGKPMKVVVAGFISSILSCLNVIFFI------------RCGRGGHWSKECPRAGNFRSSG 150
DG + V A + ++ CG GHW+++C +AG++++
Sbjct: 70 DGSRIIVEFAKGVPRGSGGSREREYVGRGPPPGTGRCFNCGIDGHWARDC-KAGDWKNK- 127
Query: 151 CY 152
CY
Sbjct: 128 CY 129
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF+ +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFIQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E + AI+++NG ++N++ + + SRK T V++ N D
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDEME 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
+++E+F YG + ++ R +GFV + D NK ++E+NG ++GK
Sbjct: 204 DEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAVEEINGTELNGK 259
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG +N +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEINGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +V KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVVKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ D ++ I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+RELF +G + ++R+ +GFV + D NK ++E+NG + GK + V
Sbjct: 204 DENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 263
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + NK I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|24642480|ref|NP_727962.1| no on or off transient A, isoform B [Drosophila melanogaster]
gi|22832361|gb|AAN09398.1| no on or off transient A, isoform B [Drosophila melanogaster]
Length = 742
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
Query: 16 IKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE-- 73
++ ++G +P+++ T G N +++VGNL+++ E+RE+F PYG + E
Sbjct: 277 LRSISGPTFELEPVEVPTETKFSGRN----RLYVGNLTNDITDDELREMFKPYGEISEIF 332
Query: 74 CDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFI 128
++ +N+ F+ +D P+ K + L+G M G+ ++V A ++IL N+ F+
Sbjct: 333 SNLDKNFTFLKVDYHPNAEKAKRALDGSMRKGRQLRVRFAP-NATILRVSNLTPFV 387
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E DE AIK +NG ++NEK + + +K + T V+V N++
Sbjct: 198 HYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNINHEVT 257
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
E RELF YG V + R+ +GFV+ + K ++ELNG G+ + V
Sbjct: 258 EEEFRELFAKYGEVTSSSLARDNEGKSRGFGFVNFTTHASAAKAVEELNGKEFRGQELYV 317
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 13/111 (11%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFV 66
++G A++ELN ++ +P +I S++ P T VF+ NL + + F
Sbjct: 116 QDGEKALEELNYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFA 173
Query: 67 PYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+G ++ C + ++ YGFVH ++ + + IK +NGM+++ K + V
Sbjct: 174 AFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYV 224
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 14/95 (14%)
Query: 26 EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN------ 79
E+ +K EAA +G N +++ NL D+ +++ELF P+GT+ C ++R+
Sbjct: 294 EQSMK-EAADKFQGAN-----LYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISR 347
Query: 80 -YGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
GFV +P + ++ + E+NG MV KP+ V +A
Sbjct: 348 GSGFVAFSTPEEASRALLEMNGKMVASKPLYVALA 382
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 12/95 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAP 59
+++E + AI++LNG ++N+K + + ++ +T T K VFV NLS+ T
Sbjct: 159 QFDSEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERDTATDKTRFNNVFVKNLSETTAEE 218
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDS 87
++ + F +GT+ ++R+ +GFV+ ++
Sbjct: 219 DLNKAFGEFGTITSVVVMRDGDGKSRCFGFVNFEN 253
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVREL 64
N ++ A++ LN VN P+++ S + P+ + +F+ NL + +
Sbjct: 75 NPQDAARALEVLNFTPVNGSPIRV--MYSHRDPSVRKSGAGNIFIKNLDKAIDHKALHDT 132
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKV 109
F +G ++ C + + YGFV DS + K I++LNGM+++ K + V
Sbjct: 133 FSVFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYV 185
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DI 90
PN TT ++VG+L N ++ +LF G VV + R+ YG+V+ +P D
Sbjct: 20 PNFVTTSLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDA 79
Query: 91 NKCIKELNGMMVDGKPMKVV 110
+ ++ LN V+G P++V+
Sbjct: 80 ARALEVLNFTPVNGSPIRVM 99
>gi|351704764|gb|EHB07683.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 143
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 30/38 (78%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVQECDIIKNYGFV 40
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS 87
K+F+GNL E+R LF YG V ECDI++NYGFV I+
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVQECDIIKNYGFVLIED 44
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 284 RYQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
Y+ G + +EA +S K+ +GN++P + E + E+YG V+ECD+VK+Y
Sbjct: 57 HYKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNEELWAKLEEYGPVIECDIVKDY 113
Query: 344 GFV 346
FV
Sbjct: 114 AFV 116
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 74
AI L+ ++ + +EA+ K + +TK+ VGN+S E+ YG V+EC
Sbjct: 51 AIHNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNEELWAKLEEYGPVIEC 107
Query: 75 DIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
DIV++Y FV+++ + D + I+ L+ G
Sbjct: 108 DIVKDYAFVYMERAEDAVEAIRGLDNTEFQG 138
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 4 GHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
G + E +T +K GQ+ +KP KIE + ++V NL D +R+
Sbjct: 264 GRAQKKVERQTELKHKFGQMKQDKP-KIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRK 322
Query: 64 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
F P+GT+ + + +GFV SP + K + E+NG +V KP+ V +A
Sbjct: 323 EFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 378
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E EE AI+++NG +N++ + + SR+ T V++ NL ++
Sbjct: 144 HFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYV 263
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 61/117 (52%), Gaps = 14/117 (11%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 66
E+ A+ +N ++ KP++I S++ P+ + +FV NL + + + + F
Sbjct: 63 EDAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFS 120
Query: 67 PYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM ++ + KV V F S
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDR--KVFVGRFKS 175
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E T+I+++NG ++NEK + + SRK T V+V N ++
Sbjct: 145 HFETEESANTSIEKVNGMLLNEKKVFVGRFISRKEREKELGEKAKLFTNVYVKNFGEDLT 204
Query: 58 APEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGM-MVDGKPMKV 109
+ E+F YG++ ++ R +GFV ++PD + ++ELN + DGK + V
Sbjct: 205 EEALHEMFEKYGSITSHRVMMKDGKSRGFGFVAFENPDAAERAVQELNAKELSDGKVLYV 264
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 37/172 (21%)
Query: 7 ENDEEGRTAIKELNG--------------QIVNEKP---------LKIEAATSRKGPNTP 43
EN + A++ELN Q NE+ LK+E T G N
Sbjct: 239 ENPDAAERAVQELNAKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVN-- 296
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKE 96
++V NL D +R+ F PYGT+ ++ + +GFV +PD K + E
Sbjct: 297 ---LYVKNLDDTIDDERLRKEFAPYGTITSAKVMLDEGRSKGFGFVCFSAPDEATKAVTE 353
Query: 97 LNGMMVDGKPMKVVVAGFISSILSCLNVIFFIRCG--RGGHWSKECPRAGNF 146
+NG +V KP+ V +A S L + R R H + ++G++
Sbjct: 354 MNGRIVGSKPLYVALAQRKEERKSHLASQYIQRVNSLRMQHIGQVYQQSGSY 405
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 15/117 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N + +P++I S++ P+ + VF+ NL + + F
Sbjct: 64 DAERALDTMNFDTIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSA 121
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C + ++ YGFVH ++ + N I+++NGM+++ K KV V FIS
Sbjct: 122 FGNILSCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEK--KVFVGRFIS 176
>gi|7662|emb|CAA39395.1| Bj6 protein [Drosophila melanogaster]
Length = 700
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
Query: 16 IKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE-- 73
++ ++G +P+++ T G N +++VGNL+++ E+RE+F PYG + E
Sbjct: 277 LRSISGPTFELEPVEVPTETKFSGRN----RLYVGNLTNDITDDELREMFKPYGEISEIF 332
Query: 74 CDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFI 128
++ +N+ F+ +D P+ K + L+G M G+ ++V A ++IL N+ F+
Sbjct: 333 SNLDKNFTFLKVDYHPNREKAKRALDGSMRKGRQLRVRFAP-NATILRVSNLTPFV 387
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSDNTR 57
H E E AIK +NG ++NEK + K + + + T ++V N+ T
Sbjct: 187 HYETAEAANAAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDTETT 246
Query: 58 APEVRELFVPYGTVVECDI-------VRNYGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
E RELF YG + + VR +GFV +I D NK + ELN +D K K+
Sbjct: 247 DDEFRELFEKYGEITSASLARDQEGKVRGFGFVNYIRHEDANKAVDELND--IDFKSQKL 304
Query: 110 VV 111
V
Sbjct: 305 YV 306
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+G A++ELN ++ KP +I S++ P T +F+ NL + + F
Sbjct: 106 DGERALEELNYTLIKGKPCRI--MWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAA 163
Query: 68 YGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + R YGFVH ++ + N IK +NGM+++ K KV V I
Sbjct: 164 FGNILSCKVAQDESGGSRGYGFVHYETAEAANAAIKSVNGMLLNEK--KVFVGHHI 217
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG ++GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGK 259
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ +N +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEINGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|118486179|gb|ABK94932.1| unknown [Populus trichocarpa]
Length = 408
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 13/89 (14%)
Query: 32 EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVH 84
EAA +G N +++ NL D+ +++ELF P+GT+ C ++R+ GFV
Sbjct: 64 EAADKFQGAN-----LYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVA 118
Query: 85 IDSP-DINKCIKELNGMMVDGKPMKVVVA 112
+P + ++ + E+NG MV KP+ V +A
Sbjct: 119 FSTPEEASRALLEMNGKMVASKPLYVALA 147
>gi|357613325|gb|EHJ68436.1| bmp-2 protein [Danaus plexippus]
Length = 366
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELN 98
P TKVFVG+L ++ ++R+LF +G V ECDI+ GFVH+ + D + I+ LN
Sbjct: 3 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEDQASAAIRALN 59
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+G++ G+ E +R LFE++G V ECD++ GFV
Sbjct: 6 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFV 43
>gi|260943806|ref|XP_002616201.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
gi|238849850|gb|EEQ39314.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
Length = 419
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 23/118 (19%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKG--------------PNTPTTKVFVGNLSDNTRAPE 60
A+ EL G+ ++ +P+ ++ +T + P+ P+ +F+GNLS NT +
Sbjct: 238 ALNELQGKEIDGRPVNLDMSTGKPKTPASNDRAKKFGDVPSAPSDTLFIGNLSFNTERNK 297
Query: 61 VRELFVPYGTVVECDI--------VRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+ E+F YGTVV C + + +G+V S + + LNG +DG+P ++
Sbjct: 298 LFEIFGEYGTVVSCRLPTHPDTQQPKGFGYVQFSSVEEAQNALNSLNGEYLDGRPCRL 355
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 59
E +E TAI+++NG ++N+K P + G + V+V NL +NT
Sbjct: 162 QFEQEESALTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGGVSKFNNVYVKNLGENTTED 221
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 105
+++ +F YGT+ ++R+ +GFV+ + PD K ++ LNG D K
Sbjct: 222 DLKNVFGAYGTISSAVVMRDSDGKSKCFGFVNFEHPDNAAKAVEALNGKKRDEK 275
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKP-----------------LKIEAATSRKGPNTPTTKV 47
+ E+ + A++ LNG+ +EK K E + +
Sbjct: 253 NFEHPDNAAKAVEALNGKKRDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNL 312
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
++ NL D ++RELF YGT+ C ++R+ GFV SP + + + E+NG
Sbjct: 313 YLKNLDDTVDDEKLRELFADYGTITSCKVMRDPQGQSRGSGFVAFSSPEEATRAVTEMNG 372
Query: 100 MMVDGKPMKVVVA 112
MV KP+ V +A
Sbjct: 373 KMVGSKPLYVALA 385
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCI 94
+T ++VG+L N ++ ELF G VV + R+ Y +V+ +S D + +
Sbjct: 27 STSLYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATRAL 86
Query: 95 KELNGMMVDGKPMKVVVAGFISSILSCLNVIFFIR 129
+ LN +++G P++++ + SI FI+
Sbjct: 87 ELLNFSVLNGNPIRIMFSHRDPSIRKSGTANIFIK 121
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFV 66
++ A++ LN ++N P++I S + P+ + T +F+ NL + + F
Sbjct: 80 QDATRALELLNFSVLNGNPIRI--MFSHRDPSIRKSGTANIFIKNLDKTIDNKALHDTFS 137
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPDIN-KCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + + YGFV + + I+++NGM+++ K +V V F+
Sbjct: 138 AFGGILSCKVAVDGSGQSKGYGFVQFEQEESALTAIEKVNGMLLNDK--QVFVGPFV 192
>gi|443906773|gb|AGD79327.1| RH34608p1 [Drosophila melanogaster]
Length = 740
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
Query: 16 IKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE-- 73
++ ++G +P+++ T G N +++VGNL+++ E+RE+F PYG + E
Sbjct: 277 LRSISGPTFELEPVEVPTETKFSGRN----RLYVGNLTNDITDDELREMFKPYGEISEIF 332
Query: 74 CDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFI 128
++ +N+ F+ +D P+ K + L+G M G+ ++V A ++IL N+ F+
Sbjct: 333 SNLDKNFTFLKVDYHPNAEKAKRALDGSMRKGRQLRVRFAP-NATILRVSNLTPFV 387
>gi|168033890|ref|XP_001769447.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679367|gb|EDQ65816.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG---------PNTPTTKVFVGNLSDNT 56
M E+ + I L+G + +PLK+ S+K P K+FVGNLS
Sbjct: 92 MATPEDAQAVINALDGTDMGGRPLKVNYPQSQKDKPRVERSERPRDDANKLFVGNLSWGC 151
Query: 57 RAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPM 107
+ F YGTVV+ +V R +GFV ++S N I+ L+G +DG+ +
Sbjct: 152 DEAALYSFFSEYGTVVDAKVVFDRDSGRSRGFGFVTMESAAAANAAIENLDGAELDGRRL 211
Query: 108 KVVVAG 113
+V +AG
Sbjct: 212 RVNLAG 217
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY-------GFVHIDSPD-INKCIKELN 98
+++ NL D T ++RELF +GT+ C ++R+ FV SPD + + E+N
Sbjct: 320 LYIKNLEDGTDDEKLRELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPDEATRAVTEMN 379
Query: 99 GMMVDGKPMKVVVA 112
G MV KP+ V +A
Sbjct: 380 GKMVGAKPLYVALA 393
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 59
E E + AI +NG +N+K P + A S G V+V NLS+N
Sbjct: 171 QFETQEAAQAAIDNVNGMELNDKQVYVGPFQRRAERSNTG-EAKFNNVYVKNLSENLSDE 229
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 105
++RE F +G V C I+R+ +GFV + P+ +++L+G D K
Sbjct: 230 KLREKFAEHGAVTSCVIMRDEEGKSKGFGFVCYEEPEGAAAAVEKLDGYTEDEK 283
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 17/108 (15%)
Query: 15 AIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 69
AI LN Q++N KP+++ + A R G +F+ NL + + F +G
Sbjct: 94 AIDVLNFQVINGKPIRVLYSQRDPAVRRSG----VGNIFIKNLDKAIDNKALLDTFAQFG 149
Query: 70 TVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 109
T+ + + YGFV ++ + + I +NGM ++ K + V
Sbjct: 150 TITSAKVAMDGQGNSKGYGFVQFETQEAAQAAIDNVNGMELNDKQVYV 197
>gi|302808075|ref|XP_002985732.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
gi|300146641|gb|EFJ13310.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
Length = 635
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR-----------------KGPNTPTTKV 47
+ EN ++ A++ELNG+ +++K + A + + +
Sbjct: 262 NFENADDAALAVEELNGKKMDDKEWYVGRAQKKSEREAELRARYDQERKERSDKYQGVNL 321
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNG 99
++ NL D ++RELF +GT++ C ++R+ GFV + + N+ + E+NG
Sbjct: 322 YLKNLDDTIDDDKLRELFHGFGTIISCKVMRDPQGHSKGSGFVAFSTTEEANRAMTEMNG 381
Query: 100 MMVDGKPMKVVVA 112
MV KP+ V +A
Sbjct: 382 RMVANKPIYVALA 394
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFV 66
++ A++ LN +VN KP++I S + P+ + +F+ NL + + + F
Sbjct: 89 QDASRALEMLNFSLVNGKPIRI--MFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFA 146
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + R YGFV + D + IK++NGM++ K +V V F+
Sbjct: 147 QFGNILSCKVAVDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEK--QVFVGPFV 201
Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAP 59
E ++ ++AIK++NG ++ EK + + R+ G V+V NL D T
Sbjct: 171 QFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDLTGGIAKFNNVYVKNLGDATTDD 230
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 105
+++ +F +G + ++R+ +GFV+ + + D ++ELNG +D K
Sbjct: 231 DLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDK 284
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
+RELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGK 259
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + NK I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
+RELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGK 259
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + NK I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
+RELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGK 259
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + NK I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|302785327|ref|XP_002974435.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
gi|300158033|gb|EFJ24657.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
Length = 642
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR-----------------KGPNTPTTKV 47
+ EN ++ A++ELNG+ +++K + A + + +
Sbjct: 262 NFENADDAALAVEELNGKKMDDKEWYVGRAQKKSEREAELRARYDQERKERSDKYQGVNL 321
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNG 99
++ NL D ++RELF +GT++ C ++R+ GFV + + N+ + E+NG
Sbjct: 322 YLKNLDDTIDDDKLRELFHGFGTIISCKVMRDPQGHSKGSGFVAFSTTEEANRAMTEMNG 381
Query: 100 MMVDGKPMKVVVA 112
MV KP+ V +A
Sbjct: 382 RMVANKPIYVALA 394
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAP 59
E ++ ++AIK++NG ++ EK + + R+ G T V+V NL D T
Sbjct: 171 QFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDLTGGVTKFNNVYVKNLGDATTDD 230
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 105
+++ +F +G + ++R+ +GFV+ + + D ++ELNG +D K
Sbjct: 231 DLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDK 284
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFV 66
++ A++ LN +VN KP++I S + P+ + +F+ NL + + + F
Sbjct: 89 QDASRALEMLNFSLVNGKPIRI--MFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFA 146
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + R YGFV + D + IK++NGM++ K +V V F+
Sbjct: 147 QFGNILSCKVAVDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEK--QVFVGPFV 201
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIE---AATSRKGP--NTPTTKVFVGNLSDNTRAP 59
+++E + AI +LNG +VN+K + + R G + VFV NL+++T
Sbjct: 146 QFDSEEAAQNAIDKLNGMLVNDKQVYVGHFLRKQDRDGALYSIKFNNVFVKNLAESTTDE 205
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGK 105
E++ +F +G + ++R+ +GFV+ +S D K ++ LNG +DG+
Sbjct: 206 ELKNIFAEHGAITSAVVMRDADGKSKCFGFVNFESADDAAKAVEALNGKKIDGE 259
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 64/133 (48%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVN-------------EKPLKIEAATSRKGPNT----PTTKV 47
+ E+ ++ A++ LNG+ ++ E+ L+++ + T +
Sbjct: 237 NFESADDAAKAVEALNGKKIDGEEWYVGKAQKKSERELELKGRFEQSMKETVDKFQGLNL 296
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
++ NL D+ +++ELF +G + C ++R+ GFV +P + ++ + E+NG
Sbjct: 297 YIKNLDDSINDEKLKELFSDFGAITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNG 356
Query: 100 MMVDGKPMKVVVA 112
M+ KP+ V +A
Sbjct: 357 KMLISKPLYVALA 369
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 15/119 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVREL 64
N ++ A+ LN +N KP++I S + P+ + +F+ NL + +
Sbjct: 62 NPQDAARALDVLNFTPLNNKPIRI--MYSHRDPSIRKSGMANIFIKNLDKGIDHKALHDT 119
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFI 115
F +G ++ C + + YGFV DS + + I +LNGM+V+ K +V V F+
Sbjct: 120 FSSFGNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLVNDK--QVYVGHFL 176
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ R A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D+ +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI---------EAATSRKGPNTPTTKVFVGNLSDN 55
H E E AI+++NG ++N++ + + EA K P V++ N ++
Sbjct: 144 HFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAKAKEFPN--VYIKNFGED 201
Query: 56 TRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPM 107
+++LF +G + ++ + +GFV + D K + E+NG ++GK +
Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQI 261
Query: 108 KV 109
V
Sbjct: 262 YV 263
>gi|118782890|ref|XP_312565.3| AGAP002390-PA [Anopheles gambiae str. PEST]
gi|116129782|gb|EAA07910.3| AGAP002390-PA [Anopheles gambiae str. PEST]
Length = 290
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDI-NKCIKELNGMM 101
P TKVFVG+L T+ EVR LF YG V ECD++ FVH+ + D+ I+ L+
Sbjct: 3 PRTKVFVGSLPPATKPEEVRRLFENYGVVTECDVMNRCAFVHMQNQDMAESAIQALHNTT 62
Query: 102 VDG 104
G
Sbjct: 63 FKG 65
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+G++ P T E +R LFE YG V ECDV+ FV
Sbjct: 6 KVFVGSLPPATKPEEVRRLFENYGVVTECDVMNRCAFV 43
>gi|198423269|ref|XP_002131002.1| PREDICTED: similar to APOBEC1 complementation factor [Ciona
intestinalis]
Length = 708
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 47 VFVGNLSDNTRAPEVRELF---VPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMV 102
++V NL NT ++ F VP G++ +R+YGFVH ++ + KC+K+LNG ++
Sbjct: 279 LYVRNLMLNTTEEQLEAEFSALVPSGSIERVKKIRDYGFVHFNTRENAIKCLKQLNGKIL 338
Query: 103 DGKPMKVVVA 112
DG PM+V +A
Sbjct: 339 DGSPMEVTLA 348
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E +E R +I+++NG ++N K + + SRK T V+V NL++
Sbjct: 145 HFETEEAARNSIEKVNGMLLNGKKVFVGRFMSRKERLEMLGDKAKKFTNVYVKNLNETMD 204
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
++RE+F +G ++ ++ R +GFV D + K ++ELN V+GK + V
Sbjct: 205 DKKLREMFEVFGKIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVEELNNKEVEGKEIYV 264
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N + +P++I S++ P+ + +F+ NL N + + F
Sbjct: 65 DAERALDTMNFDAIKGRPIRI--MWSQRDPSLRKSGVGNIFIKNLDKNIDNKALYDTFSA 122
Query: 68 YGTVVECDIVRN------YGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C I + YGFVH ++ + + I+++NGM+++GK KV V F+S
Sbjct: 123 FGNILSCKIAMDQNGSLGYGFVHFETEEAARNSIEKVNGMLLNGK--KVFVGRFMS 176
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 29 LKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGF 82
+K+E +G N ++V NL + +R+ F +GT+ ++ + +GF
Sbjct: 284 MKMERINRYQGVN-----LYVKNLDEQIDDERLRKEFSQFGTITSARVMTEGGRTKGFGF 338
Query: 83 VHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
V SP+ K + E+NG +V KP+ V +A
Sbjct: 339 VCFSSPEEATKAVTEMNGRIVVAKPLYVALA 369
>gi|221122094|ref|XP_002156057.1| PREDICTED: uncharacterized protein LOC100210881 [Hydra
magnipapillata]
Length = 276
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
TKV+VGNL DN +R LF PYG V E +++N+ FVH D N +++L+ +
Sbjct: 3 TKVYVGNLPDNCNPDNLRGLFGPYGEVNELTVIKNFAFVHFAREEDANNAVQDLHKSKML 62
Query: 104 GKPMKVVVA 112
G+ + V ++
Sbjct: 63 GQQITVEIS 71
>gi|149189538|ref|ZP_01867822.1| hypothetical protein VSAK1_00912 [Vibrio shilonii AK1]
gi|148836695|gb|EDL53648.1| hypothetical protein VSAK1_00912 [Vibrio shilonii AK1]
Length = 79
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 9/77 (11%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPDINK---CIKE 96
K+ V NL +T +VR+LF+ YG VVEC +V R+ GF +D P+ ++ IKE
Sbjct: 2 KILVRNLDRDTIEHDVRKLFLGYGRVVECTLVLDKETGRSKGFAFVDMPNEDEAKVAIKE 61
Query: 97 LNGMMVDGKPMKVVVAG 113
LN M +G ++V AG
Sbjct: 62 LNLTMFNGSKIRVKFAG 78
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 25/132 (18%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKVF 48
E E+ A++ELNG ++ L + EA+ K +F
Sbjct: 263 FEKHEDAAKAVEELNGTEFKDQTLFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLF 322
Query: 49 VGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGM 100
V NL D+ +++E F PYGT+ ++R +GFV +P + K I E N
Sbjct: 323 VKNLDDSIDDEKLKEEFAPYGTITSVRVMRTDNGKSKGFGFVCFSTPEEATKAITEKNQQ 382
Query: 101 MVDGKPMKVVVA 112
+V GKP+ V +A
Sbjct: 383 IVAGKPLYVAIA 394
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E++ + AI LNG ++N + + + +RK ++ T V+V N++ T
Sbjct: 169 HFEHESSAKEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHFTNVYVKNINLETT 228
Query: 58 APEVRELFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNG 99
E ELF YG V+ + ++ +GFV + D K ++ELNG
Sbjct: 229 DEEFNELFAKYGNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKAVEELNG 278
>gi|297739370|emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 13/108 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKP----LKIEAATSRKGPNTPT-TKVFVGNLSDNTRAP 59
E +E + AIK LNG ++N+K L + +G +P T V+V NLS+ T
Sbjct: 147 QFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSETTTDD 206
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNG 99
+++ +F YG++ ++R+ +GFV+ S D ++ LNG
Sbjct: 207 DLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNG 254
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 66
++ A++ LN +N KP++I S + P+ + VF+ NL + + + F
Sbjct: 65 QDATNALEHLNFTPLNGKPIRI--MFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFA 122
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+GTV+ C I + YGFV + + IK LNGM+++ K + V
Sbjct: 123 AFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYV 173
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 26/134 (19%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL------------------KIEAATSRKGPNTPTTK 46
+ ++ + A++ LNG N+ + K E K T
Sbjct: 238 NFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTN 297
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELN 98
+++ NL D+ +++ELF +GT+ C ++ + GFV +P + + + +N
Sbjct: 298 LYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMN 357
Query: 99 GMMVDGKPMKVVVA 112
G M+ KP+ V VA
Sbjct: 358 GKMIGRKPLYVAVA 371
>gi|443687463|gb|ELT90434.1| hypothetical protein CAPTEDRAFT_110688, partial [Capitella teleta]
Length = 353
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 19/111 (17%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-------VFVGNLSDNTRAPEVRELFVP 67
A+ +N + + +K+ ATS P T T + +FVG+LS + P++RE F P
Sbjct: 52 ALGTMNKRTCFGREMKVNWATS---PGTQTKQDTSKHHHIFVGDLSPDIETPQLREAFKP 108
Query: 68 YGTVVECDIVRN--------YGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
+GT+ +C I+R+ YGFV +++ + I +NG + + ++
Sbjct: 109 FGTISDCKIIRDPQTLKSKGYGFVSYVERKEAENAINSMNGQWIGSRAIRT 159
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 13/108 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKP----LKIEAATSRKGPNTPT-TKVFVGNLSDNTRAP 59
E +E + AIK LNG ++N+K L + +G +P T V+V NLS+ T
Sbjct: 607 QFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSETTTDD 666
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNG 99
+++ +F YG++ ++R+ +GFV+ S D ++ LNG
Sbjct: 667 DLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNG 714
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 66
++ A++ LN +N KP++I S + P+ + VF+ NL + + + F
Sbjct: 525 QDATNALEHLNFTPLNGKPIRI--MFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFA 582
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 109
+GTV+ C I + YGFV + + + IK LNGM+++ K + V
Sbjct: 583 AFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYV 633
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 26/134 (19%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL------------------KIEAATSRKGPNTPTTK 46
+ ++ + A++ LNG N+ + K E K T
Sbjct: 698 NFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTN 757
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELN 98
+++ NL D+ +++ELF +GT+ C ++ + GFV +P + + + +N
Sbjct: 758 LYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMN 817
Query: 99 GMMVDGKPMKVVVA 112
G M+ KP+ V VA
Sbjct: 818 GKMIGRKPLYVAVA 831
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELN 98
++V NLSD +RELF GT+ C ++++ +GFV S D + + E+N
Sbjct: 306 LYVKNLSDEVDDDALRELFANSGTITSCKVMKDGSGKSKGFGFVCFTSHDEATRAVTEMN 365
Query: 99 GMMVDGKPMKVVVAGFISSILSCLNVIFFIRCGRGG 134
G MV GKP+ V +A + L R G G
Sbjct: 366 GKMVKGKPLYVALAQRKDVRRAQLEANMQARMGMGA 401
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A++ LN +VN KP++I S + P+ + +F+ NL A + + F +G +
Sbjct: 83 AMETLNYHVVNGKPMRI--MWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFSAFGKI 140
Query: 72 VECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGK 105
+ C + + YGFVH D ++ I+ +N ++GK
Sbjct: 141 LSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGK 182
>gi|115461779|ref|NP_001054489.1| Os05g0120100 [Oryza sativa Japonica Group]
gi|113578040|dbj|BAF16403.1| Os05g0120100 [Oryza sativa Japonica Group]
gi|222630005|gb|EEE62137.1| hypothetical protein OsJ_16924 [Oryza sativa Japonica Group]
Length = 323
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 25/126 (19%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
+T+++VG LS TR+ ++ F YG + E ++ R+Y F+ P D + L+G V
Sbjct: 10 STRLYVGRLSSRTRSRDLEYHFSRYGRIREVELKRDYAFIEFSDPRDAEEARYNLDGRDV 69
Query: 103 DGKPMKVVVA----------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNF 146
DG + V A G C N CG GHW+++C +AG++
Sbjct: 70 DGSRILVEFAKGVPRGPGGSREYMGRGPPPGTGRCFN------CGIDGHWARDC-KAGDW 122
Query: 147 RSSGCY 152
++ CY
Sbjct: 123 KNK-CY 127
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E + AI+++NG ++N++ + + SRK T V++ N D+
Sbjct: 145 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMD 204
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF YG + ++ R +GFV + D NK ++E+NG ++GK
Sbjct: 205 DQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGK 260
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG +N +K ++ +A RK ++ ++
Sbjct: 240 EKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYI 299
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 300 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIV 359
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 360 GSKPLYVALA 369
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +V KP++I S++ P+ + VF+ NL + + + F
Sbjct: 65 DAERALDTMNFDVVKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 122
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ D ++ I+++NGM+++ + KV V F S
Sbjct: 123 FGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR--KVFVGRFKS 176
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 15/133 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E + AI+ +NG ++N+ + + ++K + T V+V N++ N
Sbjct: 181 HYEESESAKAAIENVNGMLLNDHEVYVGPHLAKKDRQSKMRELIANFTNVYVKNINLNWD 240
Query: 58 APEVRELFVPYGTVV-------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++RE F P+GT+ E R +GFV+ + D K ++ELN +DG+ + V
Sbjct: 241 EDKLRETFSPFGTISSIFLSKDESGKSRGFGFVNFEKHEDAVKAVEELNNKDIDGQKLYV 300
Query: 110 VVAGFISSILSCL 122
A S + L
Sbjct: 301 GRAQKKSERMESL 313
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----------------EAATSRKGPNTPTTKV 47
+ E E+ A++ELN + ++ + L + EAA + +
Sbjct: 274 NFEKHEDAVKAVEELNNKDIDGQKLYVGRAQKKSERMESLKHQYEAARQEQLNKYQGYNL 333
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNG 99
FV NL D+ ++ E F PYGT+ ++ + +GFV SP + K I E++
Sbjct: 334 FVKNLDDSIDDAKLEEEFKPYGTITSAKVMLDDAGKSKGFGFVCYSSPEEATKAITEMHQ 393
Query: 100 MMVDGKPMKVVVA 112
MV GKP+ V +A
Sbjct: 394 RMVAGKPLYVALA 406
>gi|149924767|ref|ZP_01913111.1| probable nucleic acid-binding protein [Plesiocystis pacifica SIR-1]
gi|149814351|gb|EDM73949.1| probable nucleic acid-binding protein [Plesiocystis pacifica SIR-1]
Length = 155
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 39 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPD 89
G + P ++FVG LS +T + +RELF G VV+ IV R +GFV + + D
Sbjct: 70 GNSGPPCRLFVGGLSWDTESDSLRELFAKVGAVVDAMIVTDRDTGDSRGFGFVTMANRKD 129
Query: 90 INKCIKELNGMMVDGKPMKVVVA 112
K +KEL G +DG+ +++ +A
Sbjct: 130 ATKAMKELGGTELDGRSIRIDLA 152
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKV 47
+ E+ +E A+++LNG+ ++K K E T +
Sbjct: 257 NFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREIELKEKFEKNLQEAADKYQNTNL 316
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
++ NL D ++RELF +GT+ C ++R+ GFV S D ++ + E+N
Sbjct: 317 YLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNN 376
Query: 100 MMVDGKPMKVVVA 112
MV KP+ V +A
Sbjct: 377 KMVGNKPLYVALA 389
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 13/106 (12%)
Query: 7 ENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEV 61
E DE AI++LNG ++N+K P + N V+V NL++ T ++
Sbjct: 168 ERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGNVKFNNVYVKNLAETTTEDDL 227
Query: 62 RELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNG 99
+E+F +G + ++R+ +GFV+ +SPD +++LNG
Sbjct: 228 KEIFGKFGAITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNG 273
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 15/112 (13%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 71
A++ LN +N +P++I S + P+ + T +F+ NL + + + F +G +
Sbjct: 89 ALEMLNFTPINGRPIRI--MYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNI 146
Query: 72 VECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+ C + + YGFV + + + I++LNGM+++ K KV V F+
Sbjct: 147 LSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDK--KVYVGPFV 196
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 15/117 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 66
+ A+ +N I+ +P++I S++ P+ + VF+ NL N + + F
Sbjct: 85 QRAERALDTMNFDIIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFS 142
Query: 67 PYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + NK I+++NGM+++GK KV V FI
Sbjct: 143 AFGNILSCKVTQDESGASKGYGFVHFETEEAANKSIEKVNGMLLNGK--KVYVGKFI 197
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 12 GRTAIKELNGQIVNEK--PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 69
GR K Q + K LKIE +G N ++V NL D +R+ F P+G
Sbjct: 288 GRAQKKAERQQELKRKFEQLKIERLNRYQGVN-----LYVKNLDDTIDDERLRKEFTPFG 342
Query: 70 TVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
T+ ++ + +GFV P + K + E+NG +V KP+ V +A
Sbjct: 343 TITSAKVMMEEGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALA 392
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 16/121 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E +I+++NG ++N K + + RK T V+V N ++
Sbjct: 167 HFETEEAANKSIEKVNGMLLNGKKVYVGKFIPRKERQKELGEKAKLFTNVYVKNFGEDMT 226
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGM-MVDGKPMK 108
+++E+F YGT+ ++ R +GFV + P+ + + +LNG + +GK M
Sbjct: 227 DDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMY 286
Query: 109 V 109
V
Sbjct: 287 V 287
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E + AI+++NG ++N++ + + SRK T V++ N D+
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF YG + ++ + +GFV + D NK ++E+NG ++GK
Sbjct: 204 DERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGK 259
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ +N +K ++ +A R+ ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ D ++ I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG ++GK
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGK 259
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ +N +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|308499747|ref|XP_003112059.1| CRE-PAB-1 protein [Caenorhabditis remanei]
gi|308268540|gb|EFP12493.1| CRE-PAB-1 protein [Caenorhabditis remanei]
Length = 695
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 14/121 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPT--TKVFVGNLSDNTR 57
H E +E + AI+++NG ++ K + + A +R+ T T V+V N D+
Sbjct: 193 HFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKKFTNVYVKNFGDHYN 252
Query: 58 APEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVV 110
+ +LF YG + CD++ + +GFV P + ++ LN VDG +K+
Sbjct: 253 KETLEKLFAKYGAITSCDVMTSDGKSKGFGFVAFAQPEEAEAAVQALNDSAVDGSDLKLH 312
Query: 111 V 111
V
Sbjct: 313 V 313
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E + AI+++NG ++N++ + + SRK T V++ N D+
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF YG + ++ + +GFV + D NK ++E+NG ++GK
Sbjct: 204 DERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGK 259
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ +N +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G + ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGAITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ D ++ I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|242089323|ref|XP_002440494.1| hypothetical protein SORBIDRAFT_09g001910 [Sorghum bicolor]
gi|241945779|gb|EES18924.1| hypothetical protein SORBIDRAFT_09g001910 [Sorghum bicolor]
gi|448878296|gb|AGE46111.1| arginine/serine-rich splicing factor RS2Z39 [Sorghum bicolor]
Length = 341
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 25/125 (20%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
T+++VG L+ TR+ ++ LF YG + E ++ R+Y F+ D D ++ +L+G VD
Sbjct: 11 TRLYVGRLAPRTRSRDLEYLFGRYGRIREVELKRDYAFIEFSDHRDADEARYQLDGRDVD 70
Query: 104 GKPMKVVVA----------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFR 147
G + V A G C N CG GHW+++C +AG+++
Sbjct: 71 GSRIVVEFAKGVPRGPGGSREYMGRGPPPGTGRCFN------CGIDGHWARDC-KAGDWK 123
Query: 148 SSGCY 152
+ CY
Sbjct: 124 NK-CY 127
>gi|340546033|gb|AEK51815.1| cytoplasmic poly(A) binding protein 1 [Ichthyophis bannanicus]
Length = 177
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E + AI+++NG ++N++ + + SRK T V++ N D+
Sbjct: 41 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMD 100
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
++E+F YG + ++ + +GFV + D NK ++E+NG V+GK
Sbjct: 101 DERLKEMFSKYGKTLSVKVMTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGK 156
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG ++GK
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGK 259
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ +N +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG ++GK
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGK 259
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ +N +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E + AI+++NG ++N++ + + SRK T V++ N D+
Sbjct: 150 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 209
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF YG + ++ + +GFV + D NK ++E+NG ++GK
Sbjct: 210 DERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGK 265
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ +N +K ++ +A R+ ++ ++
Sbjct: 245 EKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYI 304
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 305 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 364
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 365 GSKPLYVALA 374
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ +N ++ KP++I S++ P+ + VF+ NL + + + F +G +
Sbjct: 74 ALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 131
Query: 72 VECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+ C +V + Y FVH ++ D ++ I+++NGM+++ + KV V F S
Sbjct: 132 LSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR--KVFVGRFKS 181
>gi|125550625|gb|EAY96334.1| hypothetical protein OsI_18237 [Oryza sativa Indica Group]
Length = 331
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 25/126 (19%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
+T+++VG LS TR+ ++ F YG + E ++ R+Y F+ P D + L+G V
Sbjct: 18 STRLYVGRLSSRTRSRDLEYHFSRYGRIREVELKRDYAFIEFSDPRDAEEARYNLDGRDV 77
Query: 103 DGKPMKVVVA----------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNF 146
DG + V A G C N CG GHW+++C +AG++
Sbjct: 78 DGSRILVEFAKGVPRGPGGSREYMGRGPPPGTGRCFN------CGIDGHWARDC-KAGDW 130
Query: 147 RSSGCY 152
++ CY
Sbjct: 131 KNK-CY 135
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG ++GK
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGK 259
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ +N +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|195611398|gb|ACG27529.1| splicing factor, arginine/serine-rich 7 [Zea mays]
gi|223973611|gb|ACN30993.1| unknown [Zea mays]
gi|413942175|gb|AFW74824.1| Splicing factor, arginine/serine-rich 7 isoform 1 [Zea mays]
gi|413942176|gb|AFW74825.1| Splicing factor, arginine/serine-rich 7 isoform 2 [Zea mays]
gi|448878178|gb|AGE46052.1| arginine/serine-rich splicing factor RS2Z37B transcript I [Zea
mays]
Length = 333
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 25/125 (20%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
T+++VG L+ TR+ ++ LF YG + E ++ R+Y F+ + D ++ +L+G VD
Sbjct: 11 TRLYVGRLAPRTRSRDLEYLFGKYGRIREVELKRDYAFIEFSEHRDADEARYQLDGRDVD 70
Query: 104 GKPMKVVVA----------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFR 147
G + V A G C N CG GHW+++C +AG+++
Sbjct: 71 GSRIVVEFAKGVPRGPGGSREYMGRGPPPGTGRCFN------CGMDGHWARDC-KAGDWK 123
Query: 148 SSGCY 152
+ CY
Sbjct: 124 NK-CY 127
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ R A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 284 ERHEDARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 343
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 344 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 403
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 404 ATKPLYVALA 413
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 189 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 248
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
+++LF +G + +V + +GFV + D K + E+NG ++GK + V
Sbjct: 249 DERLKDLFGKFGPALSVKVVTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYV 308
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 109 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 166
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 167 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 220
>gi|195037090|ref|XP_001989998.1| GH19101 [Drosophila grimshawi]
gi|193894194|gb|EDV93060.1| GH19101 [Drosophila grimshawi]
Length = 476
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEV 61
N + TA+ +N ++ +K +K+ ATS NTP T +FVG+LS +
Sbjct: 54 NYQAASTALTAMNKRVFLDKEIKVNWATSPG--NTPKTDISSHHHIFVGDLSPEIETETL 111
Query: 62 RELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
RE F P+G + C IVR+ Y FV + + I+ +NG + + ++
Sbjct: 112 REAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRT 168
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 15/123 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP---TTKVFVGNLSDNTRAPEV 61
+ N E+G A+ ELN ++ +P +I S++ P+ T VF+ NL +
Sbjct: 116 NFHNMEDGEKALDELNYTLIKGRPCRI--MWSQRDPSLRKMGTGNVFIKNLDPAIDNKAL 173
Query: 62 RELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAG 113
+ F +G ++ C + + YGFVH DS D N I+ +NGM+++ K KV V
Sbjct: 174 HDTFSAFGKILSCKVAVDELGNSKGYGFVHFDSVDSANAAIEHVNGMLLNDK--KVYVGH 231
Query: 114 FIS 116
IS
Sbjct: 232 HIS 234
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H ++ + AI+ +NG ++N+K + + SR+ + T V+V NL +T
Sbjct: 203 HFDSVDSANAAIEHVNGMLLNDKKVYVGHHISRRDRQSKFEALKANFTNVYVKNLDLDTT 262
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E +LF YG + + R + FV+ + D + + ELN GK + V
Sbjct: 263 EEEFTKLFEKYGKITSLSLAKDNAGKFRGFAFVNFATHDSAQQAVDELNDFEYKGKKLYV 322
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Query: 29 LKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYG 81
+K+E +G N +FV NL D ++ F +GT+ ++ + +G
Sbjct: 342 MKLEKINKYQGVN-----LFVKNLQDEIDDERLKSEFSAFGTITSAKVMTDENNKSKGFG 396
Query: 82 FVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
FV +P+ K I E+N M+ GKP+ V +A
Sbjct: 397 FVCYSNPEEATKAIAEMNQRMLAGKPLYVALA 428
>gi|149392545|gb|ABR26075.1| chloroplast 29 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 205
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 22/129 (17%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTP---------TTKVFVGNL 52
M EE AI++ NG +PL++ + P +P + K++VGNL
Sbjct: 69 MSTAEEAGAAIEQFNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNL 128
Query: 53 SDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCIKELNGMMVD 103
+ + LF GTV++ ++ R +GFV S + +N I L+G+ +D
Sbjct: 129 AWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLD 188
Query: 104 GKPMKVVVA 112
G+ ++V VA
Sbjct: 189 GRQIRVTVA 197
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ +N +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SPD K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E + AI+++NG ++N++ + + SRK T V++ N D+
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF YG + ++ + +GFV + D NK ++E+NG ++GK
Sbjct: 204 DGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGK 259
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ D ++ I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 16/152 (10%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E DE AIK +NG ++NEK + + +K + T V+V N++ +
Sbjct: 193 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAADVT 252
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+ R+LF YG V + R+ +GFV+ + + +K + ELN G+ + V
Sbjct: 253 EDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAVDELNNKDFHGQDLYV 312
Query: 110 VVAGFISSILSCLNVIF-FIRCGRGGHWSKEC 140
A L + R G G +KEC
Sbjct: 313 GRAQKKHEREEELRKSYEAARRGEGQQMNKEC 344
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 13/110 (11%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 67
+G A++ELN I+ +P +I S++ P T VF+ NL + + F
Sbjct: 112 DGEKALEELNYTIIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAA 169
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+G ++ C + ++ YGFVH ++ + ++ IK +NGM+++ K + V
Sbjct: 170 FGNILSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV 219
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 13/116 (11%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN----TPT-TKVFVGNLSDNTRAPEV 61
E DE + AI ELNG ++N+K + + ++ +P V+V NLS++T +
Sbjct: 178 EQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTEDNL 237
Query: 62 RELFVPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKPMKV 109
+ELF +G + +VR +GFV+ ++PD +++LNG D K + V
Sbjct: 238 KELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLNGKKFDDKELYV 293
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----------------EAATSRKGPNTPTTKV 47
+ EN ++ A+++LNG+ ++K L + E + T +
Sbjct: 267 NFENPDDAVHAVEDLNGKKFDDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNL 326
Query: 48 FVGNLSDNTRAPE-VRELFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELN 98
++ NL + E ++ELF +GT+ C ++R+ GFV S D + + +N
Sbjct: 327 YLKNLDGSVDDDEKLKELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAMN 386
Query: 99 GMMVDGKPMKVVVA 112
G MV KP+ V +A
Sbjct: 387 GKMVGSKPLYVALA 400
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 41/153 (26%)
Query: 1 MSSGHMENDEEGRT----------------AIKELNGQIVNEKPLKI------------- 31
++S H+E D EG++ A++ELN + +N + L +
Sbjct: 257 ITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQKLYVGRAQKKRERIEEL 316
Query: 32 ----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNY 80
EAA K +FV NL D+ + ++ E F P+GT+ ++ + +
Sbjct: 317 KRQYEAARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSKGF 376
Query: 81 GFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
GFV SP + K I E+N M GKP+ V +A
Sbjct: 377 GFVCFSSPEEATKAITEMNQRMFHGKPLYVALA 409
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E + AI+ +NG ++N++ + + S+K + T V+V N+
Sbjct: 184 HYETAEAAKAAIENVNGMLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFS 243
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKPMKV 109
E+R+LF PYG + + ++ +GFV+ +S + K ++ELN ++G+ + V
Sbjct: 244 EEEMRKLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQKLYV 303
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 32 EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV 83
+AA S + P+T + ++VG L+ + + E+F P G V + R+ Y +V
Sbjct: 38 DAADSSQLPDT-SASLYVGELNPSVNEALLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYV 96
Query: 84 HIDS-PDINKCIKELNGMMVDGKPMKVV 110
+ D K I+ELN ++DG+P +++
Sbjct: 97 NFHKLEDGEKAIEELNYSLIDGRPCRIM 124
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 13/116 (11%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN----TPT-TKVFVGNLSDNTRAPEV 61
E DE + AI ELNG ++N+K + + ++ +P V+V NLS++T +
Sbjct: 178 EQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTEDNL 237
Query: 62 RELFVPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKPMKV 109
+ELF +G + +VR +GFV+ ++PD +++LNG D K + V
Sbjct: 238 KELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLNGKKFDDKELYV 293
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----------------EAATSRKGPNTPTTKV 47
+ EN ++ A+++LNG+ ++K L + E + T +
Sbjct: 267 NFENPDDAVHAVEDLNGKKFDDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNL 326
Query: 48 FVGNLSDNTRAPE-VRELFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELN 98
++ NL + E ++ELF +GT+ C ++R+ GFV S D + + +N
Sbjct: 327 YLKNLDGSVDDDEKLKELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAMN 386
Query: 99 GMMVDGKPMKVVVA 112
G MV KP+ V +A
Sbjct: 387 GKMVGSKPLYVALA 400
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|449550622|gb|EMD41586.1| hypothetical protein CERSUDRAFT_61576 [Ceriporiopsis subvermispora
B]
Length = 508
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMVD 103
KV++G L ++TR ++ F G +V ++ YGFV D+P+ + + + N
Sbjct: 89 NKVYIGGLPEHTRKEDLESCFGKIGNIVNIELKVGYGFVEFDNPEAAEESVAKYNEGYFM 148
Query: 104 GKPMKVVVA---GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKSKSSHK 160
G ++V + G + F +CG+ GHW++ECP N ++G + SH
Sbjct: 149 GNKIRVEPSRGGGRTAKYNGDPGACF--KCGQMGHWARECP---NHTTNGSVPNRRPSHH 203
Query: 161 IYQDALV 167
L+
Sbjct: 204 PTDAPLI 210
>gi|51971529|dbj|BAD44429.1| unknown protein [Arabidopsis thaliana]
Length = 290
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 22/130 (16%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG LS TR ++ LF YG V + D+ R+Y FV P D + L+G
Sbjct: 10 NTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVVFGDPRDADDARHYLDGRDF 69
Query: 103 DGKPMKVVVA-------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSS 149
DG + V + G C N CG GHW+++C AG++++
Sbjct: 70 DGSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFN------CGVDGHWARDCT-AGDWKNK 122
Query: 150 GCYCKSKSSH 159
CY + H
Sbjct: 123 -CYRCGERGH 131
>gi|170033977|ref|XP_001844852.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167875097|gb|EDS38480.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 156
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 16 IKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 75
+ + +V E P + + S K P + +FV NL+ + ++ LF P+GT+ +
Sbjct: 43 LNDEESDLVWEHPQQFFSCKSTKNPPSQGDTLFVRNLAKSVDVQQLTTLFAPFGTIARVN 102
Query: 76 IVRN-------YGFVHI-DSPDINKCIKELNGMMVDGKPMKVVVA 112
IV++ +GFVH ++ D K + ++NG ++ G+ + V A
Sbjct: 103 IVKDALGTSKGFGFVHFTNASDAGKALAKMNGHLLAGRKLHVAPA 147
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ +N +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SPD K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E + AI+++NG ++N++ + + SRK T V++ N D+
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF YG + ++ + +GFV + D NK ++E+NG ++GK
Sbjct: 204 DGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGK 259
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ D ++ I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|157114083|ref|XP_001657973.1| nucleolysin tia-1 [Aedes aegypti]
gi|108877443|gb|EAT41668.1| AAEL006710-PA [Aedes aegypti]
Length = 453
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATS-RKGPNTPTTK---VFVGNLSDNTRAPEVRE 63
N + +TA+ +N ++ +K +K+ ATS P T T++ +FVG+LS +RE
Sbjct: 55 NHQSAQTALAAMNKRLFLKKEIKVNWATSPGNQPKTDTSQHHHIFVGDLSPEIETETLRE 114
Query: 64 LFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
F P+G + C IVR+ Y FV + + I+ +NG + + ++
Sbjct: 115 AFAPFGEISNCRIVRDPQTLKSRGYAFVSFVKKAEAENAIQMMNGQWLGSRSIRT 169
>gi|308475439|ref|XP_003099938.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
gi|308266205|gb|EFP10158.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
Length = 408
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 16/118 (13%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTK----VFVGNLSDNTRAPEVRE 63
+ A++ +NG+ + E+ +++ A P N P T VFVG+LS + ++RE
Sbjct: 91 QASQALQSMNGRQLLEREMRVNWAVEPNQPGDRNKPETSRHFHVFVGDLSAEIDSTKLRE 150
Query: 64 LFVPYGTVVECDIVRN--------YGFV-HIDSPDINKCIKELNGMMVDGKPMKVVVA 112
F+P+G V E I+R+ YGFV + D + I+++NG + + ++ A
Sbjct: 151 AFLPFGEVSEAKIIRDNATNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRTNWA 208
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ +N +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SPD K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E + AI+++NG ++N++ + + SRK T V++ N D+
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF YG + ++ + +GFV + D NK ++E+NG ++GK
Sbjct: 204 DERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGK 259
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ D ++ I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 24/127 (18%)
Query: 10 EEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNL 52
E+ + A+ E+NG+ +N +K L+ + RK ++ +V NL
Sbjct: 242 EDAQKAVNEMNGKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKNL 301
Query: 53 SDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGK 105
D+ +R+ F PYGT+ ++ + +GFV SP + K + E+NG +V K
Sbjct: 302 DDSIDDERLRKEFAPYGTITSAKVMTDGSQSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 106 PMKVVVA 112
P+ V +A
Sbjct: 362 PLYVALA 368
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+ +NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGSKAMKFTNVYIKNFGEDFT 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
+++E+F +G + ++ R +GFV + D K + E+NG ++GK + V
Sbjct: 204 DEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQKAVNEMNGKEINGKILYV 263
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ +N ++ +P++I S++ P + +F+ N+ ++ + + F +G +
Sbjct: 68 ALDTMNYDVIKGRPIRI--MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNI 125
Query: 72 VECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+ C +V + YGFVH ++ + N+ I+ +NGM+++ + KV V F S
Sbjct: 126 LSCKVVCDEKGSKGYGFVHFETQEAANRAIETMNGMLLNDR--KVFVGHFKS 175
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E DE AIK +NG ++NEK + + +K + T V+V N+
Sbjct: 248 HYETDEAAANAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIPAEVT 307
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E RELF YG V + R+ +GFV+ + + +K ++ELNG G+ + V
Sbjct: 308 DEEFRELFAKYGDVTSSSLARSDEGKSRGFGFVNFTTHEAASKAVEELNGKDFRGQELYV 367
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 67
+G A+++LN ++ +P +I S++ P T VF+ NL + + F
Sbjct: 167 DGEKALEDLNYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAA 224
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+G ++ C + ++ YGFVH ++ + IK +NGM+++ K + V
Sbjct: 225 FGNILSCKVAQDENGNSKGYGFVHYETDEAAANAIKHVNGMLLNEKKVYV 274
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ +N +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SPD K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E + AI+++NG ++N++ + + SRK T V++ N D+
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF YG + ++ + +GFV + D NK ++E+NG ++GK
Sbjct: 204 DGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGK 259
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ D ++ I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|242020088|ref|XP_002430488.1| Hrp65 protein, putative [Pediculus humanus corporis]
gi|212515645|gb|EEB17750.1| Hrp65 protein, putative [Pediculus humanus corporis]
Length = 522
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDI--VRNYGFVHID-SPDINKCIKELNGMMV 102
++++GNL+++ E+++LF PYG E I + + FV +D + K +EL+G M
Sbjct: 159 RLYIGNLANDVTEEEIKQLFAPYGETSEIFINSEKMFAFVRVDYRSNAEKAKRELDGFMR 218
Query: 103 DGKPMKVVVAGFISSI 118
G+P+KV A ++I
Sbjct: 219 KGRPLKVRFAPHSAAI 234
>gi|195400098|ref|XP_002058655.1| GJ14540 [Drosophila virilis]
gi|194142215|gb|EDW58623.1| GJ14540 [Drosophila virilis]
Length = 472
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEV 61
N + TA+ +N ++ +K +K+ ATS NTP T +FVG+LS +
Sbjct: 54 NYQAASTALTAMNKRVFLDKEIKVNWATSPG--NTPKTDISSHHHIFVGDLSPEIETETL 111
Query: 62 RELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
RE F P+G + C IVR+ Y FV + + I+ +NG + + ++
Sbjct: 112 REAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRT 168
>gi|254585491|ref|XP_002498313.1| ZYRO0G07326p [Zygosaccharomyces rouxii]
gi|238941207|emb|CAR29380.1| ZYRO0G07326p [Zygosaccharomyces rouxii]
Length = 468
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 23/118 (19%)
Query: 15 AIKELNGQIVNEKPLKIEAATSR--------------KGPNTPTTKVFVGNLSDNTRAPE 60
A+KE++G+ ++ +P+ + +TS+ P+ P+ +F+GNLS N +
Sbjct: 293 AVKEMHGKELDGRPINCDMSTSKPTVNPREDRAKRFGDMPSEPSDTLFLGNLSFNADRDQ 352
Query: 61 VRELFVPYGTVV--------ECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+ ELF P+G V+ E + + +G+V S D K ++ L G +D +P+++
Sbjct: 353 IYELFSPHGEVISVRIPTHPETEQPKGFGYVQYASVDSAQKALETLQGEYIDNRPVRL 410
>gi|213513270|ref|NP_001133190.1| hyperosmotic glycine rich protein [Salmo salar]
gi|197632401|gb|ACH70924.1| hyperosmotic glycine rich protein [Salmo salar]
Length = 126
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKE 96
K+FVG LS +T + E F YG + +CD++ R +GFV D+P D +
Sbjct: 6 KLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDA 65
Query: 97 LNGMMVDGKPMKVVVAG 113
+NG +DG+ ++V AG
Sbjct: 66 MNGQSLDGRTIRVNEAG 82
>gi|452822290|gb|EME29311.1| splicing factor, arginine/serine-rich 7 [Galdieria sulphuraria]
Length = 258
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 12/114 (10%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMM 101
PT K++VGN+S + ++ +LF YG V + ++ +Y FV + D D L+G
Sbjct: 2 PTRKLYVGNVSRHATRRDLEDLFSKYGRVRDVRLLSDYAFVEMGDERDAEDARYYLDGKR 61
Query: 102 VDGKPMKVVVAGFISS---ILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCY 152
++G+ ++V A + C N CG GH+++ECP G++ S+ CY
Sbjct: 62 LEGERIRVEFAKNERAPPRQPKCYN------CGLLGHFARECP-NGDW-SNRCY 107
>gi|185133178|ref|NP_001117016.1| hyperosmotic glycine rich protein [Salmo salar]
gi|28173040|gb|AAO32675.1| hyperosmotic glycine rich protein [Salmo salar]
Length = 205
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKE 96
K+FVG LS +T + E F YG + +CD++ R +GFV D+P D +
Sbjct: 6 KLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDA 65
Query: 97 LNGMMVDGKPMKVVVAG 113
+NG +DG+ ++V AG
Sbjct: 66 MNGQSLDGRTIRVNEAG 82
>gi|402220870|gb|EJU00940.1| hypothetical protein DACRYDRAFT_108285 [Dacryopinax sp. DJM-731
SS1]
Length = 491
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVD 103
KV++G L + TR +++ F G VV ++ YGFV D+ + + + N
Sbjct: 68 NKVYIGGLPETTRDEDLQNCFGKLGNVVNIELKLGYGFVEFDNVKAAEEAVAKYNEGYFM 127
Query: 104 GKPMKVVVA---GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNF---RSSGCYCKSKS 157
G +KV + G S + F +CG+ GHW++ECP G R G Y + S
Sbjct: 128 GSKIKVEQSHGGGRTSKYSNDPGACF--KCGQHGHWARECPNGGTSIPGRKYGAYGRQDS 185
>gi|363754371|ref|XP_003647401.1| hypothetical protein Ecym_6201 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891038|gb|AET40584.1| hypothetical protein Ecym_6201 [Eremothecium cymbalariae
DBVPG#7215]
Length = 448
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 62/127 (48%), Gaps = 23/127 (18%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG--------------PNTPTTKVFVGN 51
E+ AIKE+ G+ ++ +P+ ++ +TS+ P+ P+ +F+GN
Sbjct: 259 FEDKSYAEKAIKEMQGKEIDGRPINVDMSTSKPASNPKEDRAKKFGDVPSQPSDTLFLGN 318
Query: 52 LSDNTRAPEVRELFVPYGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMV 102
LS N + ELF YG+++ E + + +G+V S + K + +L G +
Sbjct: 319 LSFNADRDNIFELFKDYGSIISVRIPTHPETNQPKGFGYVQYASIEEAQKALDKLQGEYI 378
Query: 103 DGKPMKV 109
D +P+++
Sbjct: 379 DNRPVRL 385
>gi|115476954|ref|NP_001062073.1| Os08g0483200 [Oryza sativa Japonica Group]
gi|42408160|dbj|BAD09298.1| putative RNA-binding protein cp33 [Oryza sativa Japonica Group]
gi|113624042|dbj|BAF23987.1| Os08g0483200 [Oryza sativa Japonica Group]
gi|125561943|gb|EAZ07391.1| hypothetical protein OsI_29641 [Oryza sativa Indica Group]
gi|125603790|gb|EAZ43115.1| hypothetical protein OsJ_27706 [Oryza sativa Japonica Group]
gi|215686913|dbj|BAG90783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701414|dbj|BAG92838.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 16/121 (13%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG----PNTPTTK--VFVGNLSDNTRAP 59
M ++EE +A+ LN +N++ +K++ SRK P+ P K VFVGNL+ R+
Sbjct: 120 MGSEEEALSALNHLNSTTLNDRTIKVDFTRSRKKQYVVPSAPMPKHSVFVGNLTWRVRSR 179
Query: 60 EVRELFVPYGTVVECDIV---------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 109
+RELF V ++V YGFV S + + I NG + G+ + V
Sbjct: 180 HLRELFASTPGVQSVEVVFHTTSPRRSAGYGFVSFSSKEAAEAAISTFNGTKLMGRSINV 239
Query: 110 V 110
+
Sbjct: 240 M 240
>gi|330845520|ref|XP_003294630.1| hypothetical protein DICPUDRAFT_93253 [Dictyostelium purpureum]
gi|325074872|gb|EGC28844.1| hypothetical protein DICPUDRAFT_93253 [Dictyostelium purpureum]
Length = 203
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 34 ATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS 87
+T P TP ++FVGNL+ N E+ + F +G V+ I+ +GFV ++
Sbjct: 2 STETTNPTTPAFRIFVGNLTKNVEKEELEKAFAEFGKVLSVRIISKRYQENTFGFVDMED 61
Query: 88 PDI-NKCIKELNGMMVDGKPMKVVVA 112
++ NK I +NG +DGK + V +A
Sbjct: 62 LEVANKAIAAVNGKEIDGKAVTVELA 87
>gi|386394474|ref|ZP_10079255.1| RRM domain-containing RNA-binding protein [Desulfovibrio sp. U5L]
gi|385735352|gb|EIG55550.1| RRM domain-containing RNA-binding protein [Desulfovibrio sp. U5L]
Length = 108
Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPDINKCIK 95
+ K++VGNLS ++ +VR+ F PYG V+ +++ R +GFV +D N I+
Sbjct: 2 SKKLYVGNLSFSSSEDDVRDHFAPYGEVISVNLITDRETGRLRGFGFVEMDDEGANAAIQ 61
Query: 96 ELNGMMVDGKPMKV 109
L+G + G+ +KV
Sbjct: 62 ALDGKELGGRTLKV 75
>gi|357634909|ref|ZP_09132787.1| RNP-1 like RNA-binding protein [Desulfovibrio sp. FW1012B]
gi|357583463|gb|EHJ48796.1| RNP-1 like RNA-binding protein [Desulfovibrio sp. FW1012B]
Length = 107
Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPDINKCIK 95
+ K++VGNLS ++ +VR+ F PYG V+ +++ R +GFV +D N I+
Sbjct: 2 SKKLYVGNLSFSSSEDDVRDHFAPYGEVISVNLITDRETGRLRGFGFVEMDDEGANAAIQ 61
Query: 96 ELNGMMVDGKPMKV 109
L+G + G+ +KV
Sbjct: 62 ALDGKELGGRTLKV 75
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|22329932|ref|NP_174676.2| poly(A) binding protein 1 [Arabidopsis thaliana]
gi|332193555|gb|AEE31676.1| poly(A) binding protein 1 [Arabidopsis thaliana]
Length = 407
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 28/135 (20%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK------------------ 46
+ E E TAI+++NG +V+EK L + A RK T K
Sbjct: 165 NFEKAEAAVTAIEKMNGVVVDEKELHVGRA-QRKTNRTEDLKAKFELEKIIRDMKTRKGM 223
Query: 47 -VFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKEL 97
++V NL D+ ++ ELF +GT+ C ++ + GFV S + +K + ++
Sbjct: 224 NLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKM 283
Query: 98 NGMMVDGKPMKVVVA 112
NG MV KP+ V +A
Sbjct: 284 NGKMVGNKPIYVSLA 298
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E DE + AIK +NG ++NEK + + +K + T +++ NL +
Sbjct: 193 HYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANYTNIYIKNLHADVT 252
Query: 58 APEVRELFVPYGTVVECDIVRN--------YGFVHIDSPD-INKCIKELNGMMVDGKPMK 108
E R+LF YG V I R+ +GF++ + + K ++ELN + G+ +
Sbjct: 253 DDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAVEELNSREIHGQELY 312
Query: 109 V 109
V
Sbjct: 313 V 313
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 13/110 (11%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 67
+G A++ELN ++ +P +I S++ P T +F+ NL + + F
Sbjct: 112 DGEKALEELNYTLIKNRPCRI--MWSQRDPALRKTGQGNIFIKNLDAAIDNKALHDTFAA 169
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+G ++ C + ++ YGFVH ++ + + IK +NGM+++ K + V
Sbjct: 170 FGNILSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYV 219
>gi|253181|gb|AAB22809.1| NSR1=nucleolin homolog [Saccharomyces cerevisiae, Peptide, 249 aa]
Length = 249
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 21/125 (16%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLS 53
EN AI+E+ G+ ++ +P+ + +TS+ P+ P+ +F+GNLS
Sbjct: 51 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLS 110
Query: 54 DNTRAPEVRELFVPYGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
N + ELF +G VV E + + +G+V + D K + L G +D
Sbjct: 111 FNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDN 170
Query: 105 KPMKV 109
+P+++
Sbjct: 171 RPVRL 175
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|221220658|gb|ACM08990.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|304376965|gb|ACI70202.2| Cold-inducible RNA-binding protein [Salmo salar]
Length = 161
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKE 96
K+FVG LS +T + E F YG + +CD++ R +GFV D+P D +
Sbjct: 6 KLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDA 65
Query: 97 LNGMMVDGKPMKVVVAG 113
+NG +DG+ ++V AG
Sbjct: 66 MNGQSLDGRTIRVNEAG 82
>gi|198285593|gb|ACH85335.1| hyperosmotic glycine rich protein-like [Salmo salar]
gi|221219546|gb|ACM08434.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 160
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKE 96
K+FVG LS +T + E F YG + +CD++ R +GFV D+P D +
Sbjct: 6 KLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDA 65
Query: 97 LNGMMVDGKPMKVVVAG 113
+NG +DG+ ++V AG
Sbjct: 66 MNGQSLDGRTIRVNEAG 82
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|323348433|gb|EGA82678.1| Nsr1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 254
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 21/125 (16%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLS 53
EN AI+E+ G+ ++ +P+ + +TS+ P+ P+ +F+GNLS
Sbjct: 56 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLS 115
Query: 54 DNTRAPEVRELFVPYGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
N + ELF +G VV E + + +G+V + D K + L G +D
Sbjct: 116 FNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDN 175
Query: 105 KPMKV 109
+P+++
Sbjct: 176 RPVRL 180
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 157 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 216
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 217 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 272
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 252 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 311
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 312 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 371
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 372 GSKPLYVALA 381
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ +N ++ KP++I S++ P+ + VF+ NL + + + F +G +
Sbjct: 81 ALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 138
Query: 72 VECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 139 LSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 188
>gi|392597031|gb|EIW86353.1| hypothetical protein CONPUDRAFT_133797 [Coniophora puteana
RWD-64-598 SS2]
Length = 453
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMV 102
KV+VG L ++T+ +++ F G++V ++ +GFV DS + + + + N
Sbjct: 83 ANKVYVGGLPEHTQTEDLQNCFGKLGSIVAIELKTGFGFVEFDSREAAEESVAKYNEGYF 142
Query: 103 DGKPMKVVVA---GFISSILSCLNVIFFIRCGRGGHWSKECPRA-GNFR 147
G ++V ++ G I+ +S F +CG+ GHW++ECP G+FR
Sbjct: 143 MGNKIRVELSHSRGRITKHVSSDPSACF-KCGQPGHWARECPNGDGSFR 190
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E DE AIK +NG ++NEK + + +K + T +++ N+S
Sbjct: 198 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYIKNISGEVT 257
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E R+LF P+G V + R+ +GFV+ + + K + +LNG G+ + V
Sbjct: 258 DDEFRDLFTPFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYV 317
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 13/110 (11%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 67
+G A++ELN ++ +P +I S++ P T VF+ NL + + F
Sbjct: 117 DGEKALEELNYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAA 174
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+G ++ C + ++ YGFVH ++ + ++ IK +NGM+++ K + V
Sbjct: 175 FGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV 224
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|38141765|dbj|BAD00701.1| TIA-1 homologue [Bombyx mori]
Length = 388
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 14 TAIKELNGQIVNEKPLKIEAATS-RKGPNTPTTK---VFVGNLSDNTRAPEVRELFVPYG 69
TA+ +N ++V +K +K+ ATS P T T+ +FVG+LS +RE F P+G
Sbjct: 61 TALAAMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFG 120
Query: 70 TVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
+ C IVR+ Y FV + D I+ +NG + + ++
Sbjct: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRT 169
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 135 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 194
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK + V
Sbjct: 195 DDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 254
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 230 EKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 289
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 290 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 349
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 350 GSKPLYVALA 359
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 55 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 112
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 113 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 166
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|449664731|ref|XP_002156267.2| PREDICTED: nucleolysin TIA-1 isoform p40-like [Hydra
magnipapillata]
Length = 361
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 9/72 (12%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVR--------NYGFVHI-DSPDINKCIKEL 97
+FVG+L D+ E+R+ F P+G ++ +VR NYGF+ + PD + I+++
Sbjct: 73 IFVGDLDDDLTDSELRQAFEPFGEILNAKVVRDAATEKSKNYGFISFTNKPDAERAIRDM 132
Query: 98 NGMMVDGKPMKV 109
+G M+ +P+K
Sbjct: 133 HGAMLKRRPIKT 144
>gi|330795349|ref|XP_003285736.1| hypothetical protein DICPUDRAFT_76661 [Dictyostelium purpureum]
gi|325084284|gb|EGC37715.1| hypothetical protein DICPUDRAFT_76661 [Dictyostelium purpureum]
Length = 224
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
+V+VG +S T + + F +G V+ CD+ Y FV D+ + I+E++ MVDG
Sbjct: 129 RVYVGRISQKTTRQSLEDAFTKFGRVLSCDVKNGYAFVEFDNDKSAREAIEEMHDSMVDG 188
Query: 105 KPMKVVVAGFISSIL---SCLNVIFFIRCGRGGHWSKECPRA 143
+ K++V S C FI GR GHW++ CP+
Sbjct: 189 E--KILVEKSHSGKKHPDEC-----FICRGR-GHWARSCPKG 222
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 119 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 178
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 179 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 234
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 214 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 273
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 274 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 333
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 334 GSKPLYVALA 343
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 39 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 96
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 97 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 150
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKP----LKIEAATSRKGPNTPT-TKVFVGNLSDNTRAP 59
E +E + AIK LNG ++N+K L + G +P T V+V NLS+ T
Sbjct: 173 QFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNXGNGSPKFTNVYVKNLSETTTDD 232
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNG 99
+++ +F YG++ ++R+ +GFV+ S D ++ LNG
Sbjct: 233 DLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNG 280
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 66
++ A++ LN +N KP++I S + P+ + VF+ NL + + + F
Sbjct: 91 QDATNALEHLNFTPLNGKPIRI--MFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFA 148
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 109
+GTV+ C I + YGFV + + + IK LNGM+++ K + V
Sbjct: 149 AFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYV 199
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 18 ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV 77
EL + E+ K E KG N +++ NL D+ ++ ELF +GT+ C ++
Sbjct: 303 ELRAKFEQERKNKFE---KFKGXN-----LYLKNLDDSVNDEKLXELFSEFGTITSCKVM 354
Query: 78 -------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
+ GFV +P + + + +NG M+ KP+ V VA
Sbjct: 355 LDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVA 397
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 26/172 (15%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------V 47
+ E EE + A+ +NG+ V+ + L + A R + +
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRAERQNELKRRFEQLKQDRQTRYRGVNL 296
Query: 48 FVGNLSDNTRAPEVRELFVPYGTV------VECDIVRNYGFVHIDSP-DINKCIKELNGM 100
+V NL D+ ++R +F PYG + E D + +GFV SP + K + E+NG
Sbjct: 297 YVKNLDDSISDEKLRTVFSPYGVITSAKVMTEGDHSKGFGFVCFSSPEEATKAVTEMNGC 356
Query: 101 MVDGKPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCY 152
+V KP+ V +A + L + R S+ P G+F+ Y
Sbjct: 357 IVGTKPLYVALAQRKEERKAILTNQYMKRLSTVQALSR--PVLGSFQQPNSY 406
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +++ +P++I S++ P + VF+ NL D+ + + + F
Sbjct: 64 DAERALDTMNFEVIKGQPIRI--MWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFST 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C + R +GFVH ++ + + I +NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVACDEHGSRGFGFVHFETNEAAQQAIGTMNGMLLNDR--KVFVGHFKS 175
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E + AI +NG ++N++ + + S++ T ++V NLS +
Sbjct: 144 HFETNEAAQQAIGTMNGMLLNDRKVFVGHFKSQREREAELGAQALEFTNIYVKNLSVDMD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G ++ ++R+ +GFV+ + + K + +NG V G+ + V
Sbjct: 204 EQGLQDLFFAFGNMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYV 263
>gi|291231285|ref|XP_002735593.1| PREDICTED: TIA-1 related protein-like [Saccoglossus kowalevskii]
Length = 409
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 12/108 (11%)
Query: 14 TAIKELNGQIVNEKPLKIEAAT---SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 70
A++ +NG+++ K +K+ AT S K + VFVG+LS P+++ F P+G
Sbjct: 68 AALQTMNGRMILGKEVKVNWATTPSSMKKDTSNHHHVFVGDLSSEVDTPDLKAAFAPFGQ 127
Query: 71 VVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
+ + +V++ YGFV ++ D I+ +NG + G+ ++
Sbjct: 128 ISDARVVKDLQTNKSKGYGFVSFLNKVDAENAIQGMNGQWLSGRAIRT 175
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|397576490|gb|EJK50286.1| hypothetical protein THAOC_30767 [Thalassiosira oceanica]
Length = 397
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAAT---SRKGPNTP-TTKVFVGNLSDNTRAPEVRE 63
+DE+ AI+ +NG + + L + + R P TK++VGNLS T +RE
Sbjct: 244 SDEDSLKAIEGMNGVEFDGRTLNVNKSLPKGQRPAAAAPKETKLYVGNLSWGTEEGALRE 303
Query: 64 LFVPYGTVVECDI--------VRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVVVA 112
LF YG+V++C I R + FV + D + E +G +DG+ ++V A
Sbjct: 304 LFGEYGSVIDCYIPTDRETGQHRGFAFVTMGPDDALRAADETDGYELDGRILRVNEA 360
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDI-------VRNYGFVHIDSPDINKCIKEL 97
K++VGNL+ +T A +++ F +G V++C + R +GF+ + D K I+ +
Sbjct: 196 AKIYVGNLNFDTTAEDLKAAFEEFGDVMDCFLPVDYDGNARGFGFIQMSDEDSLKAIEGM 255
Query: 98 NGMMVDGKPMKV 109
NG+ DG+ + V
Sbjct: 256 NGVEFDGRTLNV 267
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|45544646|ref|NP_956311.1| cold inducible RNA binding protein isoform 2 [Danio rerio]
gi|28856196|gb|AAH48027.1| Cold inducible RNA binding protein [Danio rerio]
gi|182891172|gb|AAI64022.1| Cirbp protein [Danio rerio]
Length = 184
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCIKE 96
K+F+G LS +T + E F YGT+ + D++R+ +GFV ++P D +
Sbjct: 6 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 65
Query: 97 LNGMMVDGKPMKVVVAG 113
+NG VDG+ ++V AG
Sbjct: 66 MNGKQVDGRMIRVDEAG 82
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVF-----------------V 49
E E+ + A+ E+NG+ +N K + + A + T + F V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D+ +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ ++ ++ A+ +N ++ KPL+I S++ P+ + +FV NL + +
Sbjct: 58 NFQHPKDAEHALDTMNFDVIKGKPLRI--MWSQRDPSLRKSGMGNIFVKNLDKSINNKAL 115
Query: 62 RELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGF 114
+ +G ++ C++V + YGFVH ++ + + I+++NGM+++G+ KV V F
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNGR--KVFVGQF 173
Query: 115 IS 116
S
Sbjct: 174 KS 175
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N + + + SRK V++ N ++
Sbjct: 144 HFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 38.1 bits (87), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR--------NYGFVHIDSP-DI 90
P+ PT ++VG+L + + E F P G ++ + R NY +V+ P D
Sbjct: 6 PSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDA 65
Query: 91 NKCIKELNGMMVDGKPMKVV 110
+ +N ++ GKP++++
Sbjct: 66 EHALDTMNFDVIKGKPLRIM 85
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E DE AIK +NG ++NEK + + +K + T V+V N+S +
Sbjct: 193 HYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNISPDVT 252
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKPMKV 109
E RELF YG V + R+ +GFV+ + + K + ELNG G+ + V
Sbjct: 253 DNEFRELFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHEAAYKAVDELNGNDFRGQELYV 312
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 67
+G A++ELN + +P +I S++ P T VF+ NL + + F
Sbjct: 112 DGEKALEELNYTPIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAA 169
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+G ++ C + ++ YGFVH ++ + + IK +NGM+++ K + V
Sbjct: 170 FGNILSCKVAQDETGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYV 219
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGK 259
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ + +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 140 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 199
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 200 DESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 255
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 63/130 (48%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 235 EKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 294
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ +++ + +GFV SP+ K + E+NG +V
Sbjct: 295 KNLDDTIDDEKLRKEFSPFGSITRAEVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 354
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 355 GSKPLYVALA 364
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ +N ++ KP++I S++ P+ + VF+ NL + + + F +G +
Sbjct: 64 ALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 121
Query: 72 VECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 LSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 171
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGK 259
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ + +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|195110141|ref|XP_001999640.1| GI22960 [Drosophila mojavensis]
gi|193916234|gb|EDW15101.1| GI22960 [Drosophila mojavensis]
Length = 475
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEV 61
N + TA+ +N ++ +K +K+ ATS NTP T +FVG+LS +
Sbjct: 54 NYQAASTALTAMNKRVFLDKEIKVNWATSPG--NTPKTDISSHHHIFVGDLSPEIETETL 111
Query: 62 RELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
RE F P+G + C IVR+ Y FV + + I+ +NG + + ++
Sbjct: 112 REAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQSMNGQWIGSRNIRT 168
>gi|259648115|dbj|BAI40365.1| TIA-1 homologue [Bombyx mori]
Length = 402
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 14 TAIKELNGQIVNEKPLKIEAATS-RKGPNTPTTK---VFVGNLSDNTRAPEVRELFVPYG 69
TA+ +N ++V +K +K+ ATS P T T+ +FVG+LS +RE F P+G
Sbjct: 61 TALAAMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFG 120
Query: 70 TVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
+ C IVR+ Y FV + D I+ +NG + + ++
Sbjct: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRT 169
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 15/117 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFV 66
E+G A++ELN ++ KP +I S++ P T VF+ NL + + F
Sbjct: 100 EDGEKALEELNYTVIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFA 157
Query: 67 PYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V I
Sbjct: 158 AFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEK--KVFVGHHI 212
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSDNTR 57
H E E AIK +NG ++NEK + K E + + T ++V N+ +
Sbjct: 182 HYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVS 241
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
+ R+LF +G + I R+ +GFV +I + + LN G+ + V
Sbjct: 242 DEDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYV 301
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGK 259
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ + +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFV 49
E E+ + A+ E+NG+ +N K + K E T +G ++V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +++ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTR 57
H E +E AI+++NG ++N++ + + SRK G T T V++ N D
Sbjct: 144 HFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
+ LF +G V+ ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 64/125 (51%), Gaps = 14/125 (11%)
Query: 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRA 58
+S + E + A+ +N ++ KP++I S++ P+ + VF+ NL+
Sbjct: 55 ASVNFEQPADAERALDTMNFDVIKGKPVRI--MWSQRDPSLRRSGVGNVFIKNLNKTIDN 112
Query: 59 PEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVV 111
+ + F +G ++ C +V + +GFVH ++ + + I+++NGM+++ + KV V
Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGSKGHGFVHFETEEAAERAIEKMNGMLLNDR--KVFV 170
Query: 112 AGFIS 116
F S
Sbjct: 171 GQFKS 175
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 24/127 (18%)
Query: 10 EEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNL 52
E+ + A+ E+NG+ +N +K L+ + RK ++ +V NL
Sbjct: 242 EDAQKAVDEMNGKELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNL 301
Query: 53 SDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGK 105
D+ +R+ F PYGT+ ++ R +GFV SP + K + E+NG +V K
Sbjct: 302 DDSIDDERLRKEFAPYGTITSAKVMTDGPQSRGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 106 PMKVVVA 112
P+ V +A
Sbjct: 362 PLYVALA 368
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E AI+ +NG ++N++ + + SRK T +++ N ++
Sbjct: 144 HFETEEAANRAIETMNGMLLNDRKVFVGHFKSRKEREEELGSKALKFTNIYIKNFGEDYN 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKV 109
+++E+F +G + ++ R +GFV+ D K + E+NG ++GK + V
Sbjct: 204 DEKLKEVFAAFGRTLSVRVMKDERGRSRGFGFVNFAHHEDAQKAVDEMNGKELNGKVIYV 263
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ +N ++ +P++I S++ P + +F+ N+ ++ + + F +G +
Sbjct: 68 ALDTMNYDVIKGRPIRI--MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNI 125
Query: 72 VECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+ C +V + YGFVH ++ + N+ I+ +NGM+++ + KV V F S
Sbjct: 126 LSCKVVCDERGSKGYGFVHFETEEAANRAIETMNGMLLNDR--KVFVGHFKS 175
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 28/133 (21%)
Query: 8 NDEEGRTAI--------KELNGQIV------------NEKPLKIEAATSRKGPNTPTTKV 47
N EE ++A+ KE+NGQ + E + EA K +
Sbjct: 288 NYEEHKSAVEAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNL 347
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNG 99
FV NL D + ++ E F P+GT+ ++ R +GFV +P + K I E+N
Sbjct: 348 FVKNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKSRGFGFVCFSTPEEATKAITEMNQ 407
Query: 100 MMVDGKPMKVVVA 112
MV+GKP+ V +A
Sbjct: 408 RMVNGKPLYVALA 420
>gi|319411853|emb|CBQ73896.1| probable PAB1-mRNA polyadenylate-binding protein [Sporisorium
reilianum SRZ2]
Length = 650
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELN-----GQIV----------NEKPLK--IEAATSRKGPNTPTTKV 47
+ E+ E +TA+ EL+ GQ + E+ L+ EAA + K +
Sbjct: 273 NFEDHNEAQTAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNL 332
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNG 99
++ N+ ++ +RE F P+G + C I+ R +GFV P + NK + E+NG
Sbjct: 333 YLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMNG 392
Query: 100 MMVDGKPMKVVVA 112
M+D +P+ V +A
Sbjct: 393 KMLDNRPLYVALA 405
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ +P +I S++ P T +F+ NL + +
Sbjct: 97 NAADGERAMEQLNYSLIRNRPCRI--MWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDT 154
Query: 65 FVPYGTVVECDIVRN------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFI 115
F +G ++ C + N YGFVH ++ IK +NGM+++ K KV V I
Sbjct: 155 FAAFGNILSCKVATNDTGSLGYGFVHYETAEAAEAAIKHVNGMLLNDK--KVYVGHHI 210
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGK 259
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ + +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 23/131 (17%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR-------------KGPNTPTTKVFVGN 51
+ E+ E A +ELNG+ + +K + + A + + +++ N
Sbjct: 235 NFEDHEAAHRATEELNGRKLGDKEVYVGRAQKKSERESFLRKLREERAQKYQGINLYIKN 294
Query: 52 LSDNTRAPEVRELF--VPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMM 101
L D E+ +LF +P+G + C ++ R +GFV +P D +K + E+NG M
Sbjct: 295 LDDTVNDEELHKLFSALPFGQITSCKVMSDDKGNSRGFGFVCYTNPEDASKAVSEMNGKM 354
Query: 102 VDGKPMKVVVA 112
V KP+ V +A
Sbjct: 355 VANKPIYVALA 365
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT------TKVFVGNLSDNTRA 58
H E E +AI ++NG+++N K + + +RK TP T +++ NL +
Sbjct: 144 HYETSEAADSAIAKVNGKMLNGKIVYVGRFIARK-ERTPGSDPEKFTNIYIKNLGEAYTE 202
Query: 59 PEVRELFVPYGTVVEC-------DIVRNYGFVHI-DSPDINKCIKELNGMMVDGKPMKV 109
+++ F +GTV DI R + FV+ D ++ +ELNG + K + V
Sbjct: 203 EDLKRDFGAFGTVQSAVLMKDPRDIGRQFAFVNFEDHEAAHRATEELNGRKLGDKEVYV 261
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ LN ++ +P +I S + P+ + +F+ NL + + + F
Sbjct: 63 DAERALDTLNYTLIKGRPCRI--MWSHRDPSIRKSGQGNIFIKNLDKSIDNKALYDTFSA 120
Query: 68 YGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I ++NG M++GK V V FI+
Sbjct: 121 FGNILSCKVVTDGKGNSKGYGFVHYETSEAADSAIAKVNGKMLNGKI--VYVGRFIA 175
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E + AI+++NG ++N++ + + SRK T V++ N D+
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
++E+F YG + ++ R +GFV + D NK ++E+NG ++GK
Sbjct: 204 DERLKEIFDKYGKTLSVKVMTDPSGKSRGFGFVSYEKHEDANKAVEEMNGTELNGK 259
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG +N +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +V KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVVKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ D ++ I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|195445204|ref|XP_002070221.1| GK11939 [Drosophila willistoni]
gi|194166306|gb|EDW81207.1| GK11939 [Drosophila willistoni]
Length = 469
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEV 61
N + TA+ +N ++ EK +K+ ATS N P T +FVG+LS +
Sbjct: 54 NYQAATTALTAMNKRVFLEKEIKVNWATSPG--NQPKTDISSHHHIFVGDLSPEIETETL 111
Query: 62 RELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
RE F P+G + C IVR+ Y FV + + I+ +NG + + ++
Sbjct: 112 REAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRT 168
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 35/152 (23%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI----------------------EAATSRKGPNT 42
+ EN ++ +++ LNG+ V+ K + EAA +G N
Sbjct: 254 NFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGAN- 312
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCI 94
++V NL D+ +++ELF +GT+ C ++R+ GFV SP + + +
Sbjct: 313 ----LYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARAL 368
Query: 95 KELNGMMVDGKPMKVVVAGFISSILSCLNVIF 126
E+NG M+ KP+ V +A ++ L F
Sbjct: 369 AEMNGRMIVSKPLYVALAQRKEDRIARLQAQF 400
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 59
+ +E AI++LNG ++N+K P + T VFV NL++ T
Sbjct: 163 QFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEE 222
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 105
+++ +F +G + ++R+ +GFV+ + + D + ++ LNG VDGK
Sbjct: 223 DLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGK 276
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 15/119 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVREL 64
N + A+ LN +N P+++ S + P+ + + +F+ NL + +
Sbjct: 79 NPVDASRALDVLNFTPLNGNPIRV--MYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDT 136
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPDIN-KCIKELNGMMVDGKPMKVVVAGFI 115
F +G+++ C + + +GFV D+ + K I++LNGM+++ K +V V F+
Sbjct: 137 FSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDK--QVFVGPFL 193
>gi|339243331|ref|XP_003377591.1| paraspeckle component 1 [Trichinella spiralis]
gi|316973596|gb|EFV57164.1| paraspeckle component 1 [Trichinella spiralis]
Length = 461
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-YGFVHI-DSPDINKCIKELNGMMV 102
++F+GNL +T E+RELF +G + EC I R + FV + + P + ++L+G +
Sbjct: 57 ARLFIGNLPQDTTEEELRELFSKFGELSECFISRKGFAFVRMANRPSAERAKEKLDGFVF 116
Query: 103 DGKPMKVVVAGFISSI 118
G+P+++ A +++
Sbjct: 117 KGRPLRIRFAANAAAL 132
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 15/117 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFV 66
E+G A++ELN ++ KP +I S++ P T VF+ NL + + F
Sbjct: 100 EDGEKALEELNYTVIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFA 157
Query: 67 PYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V I
Sbjct: 158 AFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEK--KVFVGHHI 212
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSDNTR 57
H E E AIK +NG ++NEK + K E + + T ++V N+ +
Sbjct: 182 HYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVT 241
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
+ RELF +G + I R+ +GFV +I + LN + G+ + V
Sbjct: 242 DEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYV 301
>gi|71018821|ref|XP_759641.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
gi|74701642|sp|Q4P8R9.1|PABP_USTMA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46099399|gb|EAK84632.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
Length = 651
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 32 EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVH 84
EAA + K +++ N+ ++ +RE F P+G + C I+ R +GFV
Sbjct: 317 EAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVC 376
Query: 85 IDSP-DINKCIKELNGMMVDGKPMKVVVA 112
+P + NK + E+NG M+D +P+ V +A
Sbjct: 377 YSAPEEANKAVSEMNGKMLDNRPLYVALA 405
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ +P +I S++ P T +F+ NL + +
Sbjct: 97 NAADGERAMEQLNYSLIRNRPCRI--MWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDT 154
Query: 65 FVPYGTVVECDIVRN------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFI 115
F +G ++ C + N YGFVH ++ IK +NGM+++ K KV V I
Sbjct: 155 FAAFGNILSCKVATNETGSLGYGFVHYETAEAAEAAIKHVNGMLLNDK--KVYVGHHI 210
>gi|321474203|gb|EFX85168.1| hypothetical protein DAPPUDRAFT_98603 [Daphnia pulex]
Length = 250
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK 92
P TK+FVG L + + ++R LF YG + ECD++ +GFVH+ S ++ K
Sbjct: 3 APPTKIFVGRLPLDAKQEDLRALFEKYGVITECDVLNRFGFVHMKSEEMAK 53
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+G + E +R LFEKYG + ECDV+ +GFV
Sbjct: 7 KIFVGRLPLDAKQEDLRALFEKYGVITECDVLNRFGFV 44
>gi|114778914|ref|ZP_01453708.1| RNA-binding protein [Mariprofundus ferrooxydans PV-1]
gi|114550830|gb|EAU53397.1| RNA-binding protein [Mariprofundus ferrooxydans PV-1]
Length = 153
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 33 AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVH 84
A+ S + T+ ++VGNL N +++ LF PYG V++ +V++ Y FV
Sbjct: 60 ASNSASKAESATSNLYVGNLPFNAGQDDIKNLFAPYGEVIDIRMVKDRRSKRFKGYAFVE 119
Query: 85 IDSPDINKCIKELNGMMVDGKPMKV 109
+++ N IK+L+G G+ ++V
Sbjct: 120 MNTGGANAAIKQLDGNDYAGRTLRV 144
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H EN+ + R AI+ ++G ++N++ + + S+K + T V+V N+ T
Sbjct: 172 HFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETS 231
Query: 58 APEVRELFVPYG----TVVECDI---VRNYGFVHI-DSPDINKCIKELNGMMVDGKPMKV 109
E ELF YG V+E D +R +GFV+ D K + ELN + G+ + V
Sbjct: 232 QEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYV 291
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 24 VNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN---- 79
+ E + EAA K +FV NL D+ +++E F P+GT+ ++R+
Sbjct: 301 LQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGN 360
Query: 80 ---YGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
+GFV +P + K I E N +V GKP+ V +A
Sbjct: 361 SRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAP 59
+ + E G AI++LN ++ KP +I + + +KG + +++ NL
Sbjct: 85 NFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKG----SGNIYIKNLHPAIDNK 140
Query: 60 EVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVV 111
+ E F +G ++ C + R +GFVH ++ D I+ ++GM+++ + + V +
Sbjct: 141 SLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVAL 200
>gi|357162700|ref|XP_003579494.1| PREDICTED: uncharacterized protein LOC100845138 [Brachypodium
distachyon]
Length = 929
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 12/106 (11%)
Query: 17 KELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVV---- 72
K L + + PL E ++ NT ++VGNL + + ++ ELF+P+G +V
Sbjct: 179 KHLGKRQEHTLPLSQEGGKLKEVDNT---NLYVGNLPASVGSHKLIELFLPFGRIVRSKV 235
Query: 73 --EC--DIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVAG 113
EC + + YGFV D P I +NG +VDGK ++V VAG
Sbjct: 236 ADECFTGLSKGYGFVKYDDPHSATAAINRMNGRLVDGKILEVRVAG 281
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 27/133 (20%)
Query: 14 TAIKELNGQIVNEKPLKIEAA-----------------TSRKGPNTPTTKVFVGNLSDNT 56
AI +NG++V+ K L++ A S+ + ++V NLS +
Sbjct: 260 AAINRMNGRLVDGKILEVRVAGVPPSGSNPSIQSVSETYSQPSEEIDMSSLYVRNLSLSM 319
Query: 57 RAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKCIKELNGMMVDGKPM 107
E+ + F+P+G +++ + R+ YGFV + +S + I LNG +V+GK M
Sbjct: 320 TKEELLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAIIHLNGHLVEGKKM 379
Query: 108 KVVVAGFISSILS 120
+V V+G +S LS
Sbjct: 380 EVRVSG-VSPALS 391
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 25/138 (18%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEA-----ATSRKGPNTPT----------TKVFVGNL 52
N E AI LNG +V K +++ A S + T ++V N+
Sbjct: 358 NSHEAANAIIHLNGHLVEGKKMEVRVSGVSPALSNSAVESHTDARLIKEIDMANLYVCNI 417
Query: 53 SDNTRAPEVRELFVPYGTVVECDIVRN---------YGFVHI-DSPDINKCIKELNGMMV 102
+ ++ E+F+P+G + + + YGFV DS + I ++G +V
Sbjct: 418 PTSIDTKKLIEIFLPFGKITHARVAAHQGTYSGKGRYGFVKFADSQCAAEAITLMDGALV 477
Query: 103 DGKPMKVVVAGFISSILS 120
+G+ + V VAG SS S
Sbjct: 478 EGETLVVRVAGLSSSASS 495
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPT-------------TKVFVGNLSDNTRAPEV 61
AI ++G +V + L + A ++P +++++ NL +T A +
Sbjct: 468 AITLMDGALVEGETLVVRVAGLSSSASSPAVHGLPIPSPEINKSRIYITNLPRSTNADMM 527
Query: 62 RELFVPYGTVVECDIVRNYGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
+LFVP+G + + + Y V + D K IK ++G M+ GK + V
Sbjct: 528 VKLFVPFGQISKVVMNLEYSLVYYADVASAVKAIKHMDGYMIGGKRLVV 576
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 18/118 (15%)
Query: 15 AIKELNGQIVNEKPLKIEAATS---------------RKGPNTPTTKVFVGNLSDNTRAP 59
AIK ++G ++ K L + + S ++ VFVG +
Sbjct: 560 AIKHMDGYMIGGKRLVVRRSDSCPTDAAGHTSTQSLGKEVKEIDMANVFVGRIPSTVNGD 619
Query: 60 EVRELFVPYGTVVECDIVRN--YGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVAGF 114
++ ELF P+G +V+ + ++ YG + P I +NG + G + V VAG
Sbjct: 620 QLVELFRPFGQIVQVRVFQHQGYGMFRFNDPFSAAAAIDHMNGYQIGGSALVVRVAGL 677
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-----------------TTKV 47
+ EN ++ A++ LNG ++K + A + T ++ +
Sbjct: 261 NFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNL 320
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
+V NL + +++E+F P+GTV C ++R+ GFV +P + + + +L+G
Sbjct: 321 YVKNLDPSISDEKLKEIFSPFGTVTSCKVMRDPNGTSKGSGFVAFSTPEEATEAMSQLSG 380
Query: 100 MMVDGKPMKVVVA 112
M++ KP+ V +A
Sbjct: 381 KMIESKPLYVAIA 393
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 22/161 (13%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAPEVR 62
N+E + AI++LNG ++N+K + + R+ T T V+V NL+++T +++
Sbjct: 173 NEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLK 232
Query: 63 ELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGF 114
F YG + ++++ +GFV+ + + D + ++ LNG D K V A
Sbjct: 233 NAFGEYGKITSAVVMKDGDGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQK 292
Query: 115 ISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKS 155
S + L V R KE A F+SS Y K+
Sbjct: 293 KSERETELRV-------RYEQNLKEA--ADKFQSSNLYVKN 324
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVREL 64
N ++ AI+ELN + KP+++ S + P+ + +F+ NL ++ + +
Sbjct: 86 NPQDAARAIQELNYIPLYGKPIRV--MYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDT 143
Query: 65 FVPYGTVVECDIV-------RNYGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
F +G +V C + + YGFV + + K I++LNGM+++ K + V
Sbjct: 144 FSVFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 18 ELNGQIVNEKPLKIEAATSRKGPNTP----TTKVFVGNLSDNTRAPEVRELFVPYGTVVE 73
+L GQ N + + +A G T TT ++VG+L N ++ + F G VV
Sbjct: 5 QLQGQTPNGSTVAVTSAPVTSGGATAAGFGTTSLYVGDLDVNVTDSQLFDAFSQMGPVVS 64
Query: 74 CDIVRN--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVV 110
+ R+ YG+V+ +P D + I+ELN + + GKP++V+
Sbjct: 65 VRVCRDLATRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVM 110
>gi|223590120|sp|A5DM21.2|PABP_PICGU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|190347872|gb|EDK40224.2| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----------------EAATSRKGPNTPTTKV 47
+ EN E A+KE+N + ++ + L + E+ K +
Sbjct: 285 NFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNL 344
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNG 99
FV NL D+ + ++ E F P+GT+ ++ + +GFV SP + K I E+N
Sbjct: 345 FVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQ 404
Query: 100 MMVDGKPMKVVVA 112
M+ GKP+ V +A
Sbjct: 405 RMIQGKPLYVALA 417
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL---KIEAATSR--KGPNTPTTKVFVGNLSDNTRAP 59
E +E AI+ LNG +V +K + K + R GP+T T +++ NL +
Sbjct: 144 QFETEESANAAIERLNGYLVGDKQIYVGKFVKKSDRISSGPDTRYTNLYMKNLDLDISET 203
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVVV 111
+RE F +G ++ + ++ +GFV+ D+P D + ++ +NG+ + K + V
Sbjct: 204 LLREKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVAR 263
Query: 112 A 112
A
Sbjct: 264 A 264
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 35/138 (25%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR----------------------KGPNT 42
+ +N E+ + A++ +NG + K L + A + KG N
Sbjct: 235 NFDNPEDAKRAMETMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSN- 293
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCI 94
++V N+ DN +R+ F GT+ I+R+ +GFV +P + NK +
Sbjct: 294 ----IYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAV 349
Query: 95 KELNGMMVDGKPMKVVVA 112
+G M GKP+ V +A
Sbjct: 350 NSFHGFMFHGKPLYVSLA 367
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 15/112 (13%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
AI+ N +N K +++ SR+ P+ + VFV NL+++ + ++F +G +
Sbjct: 67 AIEVKNHSTLNGKAIRV--MWSRRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNI 124
Query: 72 VECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+ +V + YGFV ++ + N I+ LNG +V K ++ V F+
Sbjct: 125 LSSKVVMSEDGKSKGYGFVQFETEESANAAIERLNGYLVGDK--QIYVGKFV 174
>gi|195331490|ref|XP_002032434.1| GM23518 [Drosophila sechellia]
gi|194121377|gb|EDW43420.1| GM23518 [Drosophila sechellia]
Length = 464
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEV 61
N + TA+ +N ++ EK +K+ ATS N P T +FVG+LS +
Sbjct: 54 NYQAASTALTAMNKRLFLEKEIKVNWATSPG--NQPKTDISSHHHIFVGDLSPEIETETL 111
Query: 62 RELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
RE F P+G + C IVR+ Y FV + + I+ +NG + + ++
Sbjct: 112 REAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRT 168
>gi|226492336|ref|NP_001150253.1| ribonucleoprotein [Zea mays]
gi|195637832|gb|ACG38384.1| ribonucleoprotein [Zea mays]
Length = 275
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-PNTP------TTK--VFVGNLSDNT 56
M ++EE A+ LN I+N++ +K++ A RK P P T K VFVGNL+
Sbjct: 118 MGSEEEALAALTHLNSTILNDRKIKVDFARPRKKQPKQPAVVSDATEKYVVFVGNLTWRV 177
Query: 57 RAPEVRELFVPYGTVVECDIV---------RNYGFVHIDSPD-INKCIKELNGMMVDGKP 106
R +RELF VV +++ Y FV S + I NG ++ G+P
Sbjct: 178 RNRHLRELFASAPGVVSAEVIFHTTTPRRSAGYAFVSFSSKESAGAAISAFNGKILMGRP 237
Query: 107 MKVV 110
+ V+
Sbjct: 238 INVM 241
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 25/131 (19%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFV 49
EN E R A+ ELN + VN K L A ++ K ++V
Sbjct: 275 ENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYV 334
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMM 101
NL D +R F +GT+ ++R+ +GFV SPD K + E+NG M
Sbjct: 335 KNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKM 394
Query: 102 VDGKPMKVVVA 112
+ KP+ V +A
Sbjct: 395 IGTKPLYVALA 405
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSDNTR 57
H E AIK +NG ++N+K + K E + + T V++ N+
Sbjct: 180 HYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVT 239
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPM 107
E +L P+G + + R+ +GFV+ ++ + K + ELN V+GK +
Sbjct: 240 DAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKL 297
>gi|444722852|gb|ELW63526.1| RNA-binding protein 4 [Tupaia chinensis]
Length = 131
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI 85
K+F+GNL T E+R LF YG V+ C I++NYGFVHI
Sbjct: 2 AKLFIGNLPRETTEQEMRSLFEQYGKVLGCGIIKNYGFVHI 42
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ T+ + +R LFE+YGKV+ C ++KNYGFV
Sbjct: 3 KLFIGNLPRETTEQEMRSLFEQYGKVLGCGIIKNYGFV 40
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 284 RYQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
Y+ G + +EA +S K+ +G ++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 57 HYKLQGVNINVEASKNKSKTST---KLHVGIISPTCTNKELRAKFEEYGPVIECDIVKDY 113
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+++ A+ L+ + + +EA+ K + +TK+ VG +S E+R
Sbjct: 41 HIKDKTAPEDAMHNLHHYKLQGVNINVEAS---KNKSKTSTKLHVGIISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNY 80
F YG V+ECDIV++Y
Sbjct: 98 FEEYGPVIECDIVKDY 113
>gi|327289704|ref|XP_003229564.1| PREDICTED: hypothetical protein LOC100563639 [Anolis carolinensis]
Length = 397
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDI----VRNYGFVHIDS-PDINKCIKELNGM 100
K++VGNL ++R LF +G VV CD+ V++Y FVH+D+ D IK LNGM
Sbjct: 67 KIYVGNLPKGCGTEDIRPLFEDFGPVVACDVVKSGVKDYAFVHMDNEEDGRAAIKHLNGM 126
Query: 101 MVDGKPMKV 109
+ G + V
Sbjct: 127 ELKGSYIAV 135
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDV----VKNYGFV 346
KI++GN+ G E IRPLFE +G VV CDV VK+Y FV
Sbjct: 67 KIYVGNLPKGCGTEDIRPLFEDFGPVVACDVVKSGVKDYAFV 108
>gi|14029147|gb|AAK51123.1| polyadenylated mRNA-binding protein 2 [Anemia phyllitidis]
Length = 472
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKP-----------------LKIEAATSRKGPNTPTTKV 47
+ +N ++ A++ +NG++ N+K +K E + +
Sbjct: 76 NFKNADDAAKAVENINGKVFNDKEWYVGRAQKKSEREAELKVKFEQLRKERTEKFQGVNL 135
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNG 99
++ N+ D+ +++ELF +GTV C I+R+ GFV + S D + + E+NG
Sbjct: 136 YLKNVDDSIDDEKLKELFSGFGTVNSCKIMRSPQGQIVGSGFVALSSKDEAMRAVNEMNG 195
Query: 100 MMVDGKPMKVVVA 112
MV KP+ V VA
Sbjct: 196 KMVGSKPLYVAVA 208
>gi|440802526|gb|ELR23455.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 348
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 15/104 (14%)
Query: 15 AIKELNGQIVNEKPLKIEAA------------TSRKGPNTPTTKVFVGNLSD-NTRAPEV 61
A++EL+G + K L++E A R P+ +FV N +TRA ++
Sbjct: 108 AVRELDGSLHGRKRLRVELARGDGLIKKREDERRRDAARRPSETLFVVNFDAISTRARDL 167
Query: 62 RELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGM-MVD 103
+LF PYG +V ++ RN+GFV + + + ++ LNG MVD
Sbjct: 168 EDLFSPYGRIVRIELKRNFGFVQFSAVEEATRALEALNGTKMVD 211
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMV 102
P +FVGNL T EVRELF G + D+ + Y FV +++ ++ ++EL+G +
Sbjct: 59 PERAIFVGNLDPYTTTEEVRELFEGKGDIRRVDMKQGYAFVFLENGH-HRAVRELDGSLH 117
Query: 103 DGKPMKVVVA 112
K ++V +A
Sbjct: 118 GRKRLRVELA 127
>gi|125559266|gb|EAZ04802.1| hypothetical protein OsI_26976 [Oryza sativa Indica Group]
Length = 259
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 22/129 (17%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTP---------TTKVFVGNL 52
M EE A+++ NG +PL++ + P +P + K++VGNL
Sbjct: 123 MSTAEEAGAAVEQFNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNL 182
Query: 53 SDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCIKELNGMMVD 103
+ + LF GTV++ ++ R +GFV S + +N I L+G+ +D
Sbjct: 183 AWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLD 242
Query: 104 GKPMKVVVA 112
G+ ++V VA
Sbjct: 243 GRQIRVTVA 251
>gi|115473531|ref|NP_001060364.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|22296371|dbj|BAC10140.1| putative 29 kDa ribonucleoprotein A, chloroplast precursor [Oryza
sativa Japonica Group]
gi|113611900|dbj|BAF22278.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|125601192|gb|EAZ40768.1| hypothetical protein OsJ_25244 [Oryza sativa Japonica Group]
Length = 264
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 22/129 (17%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTP---------TTKVFVGNL 52
M EE A+++ NG +PL++ + P +P + K++VGNL
Sbjct: 128 MSTAEEAGAAVEQFNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNL 187
Query: 53 SDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCIKELNGMMVD 103
+ + LF GTV++ ++ R +GFV S + +N I L+G+ +D
Sbjct: 188 AWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLD 247
Query: 104 GKPMKVVVA 112
G+ ++V VA
Sbjct: 248 GRQIRVTVA 256
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 15/117 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFV 66
E+G A++ELN ++ KP +I S++ P T VF+ NL + + F
Sbjct: 99 EDGEKALEELNYTVIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFA 156
Query: 67 PYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V I
Sbjct: 157 AFGNILSCKVAQDEHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEK--KVFVGHHI 211
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSDNTR 57
H E E AIK +NG ++NEK + K E + + T ++V N+ +
Sbjct: 181 HYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVT 240
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
E R+LF +G + I R+ +GFV +I + ++ LN G+ + V
Sbjct: 241 DDEFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASVAVETLNDTEFHGQKLYV 300
>gi|24649519|ref|NP_732945.1| Rox8, isoform D [Drosophila melanogaster]
gi|442620772|ref|NP_732944.2| Rox8, isoform E [Drosophila melanogaster]
gi|442620774|ref|NP_001262897.1| Rox8, isoform G [Drosophila melanogaster]
gi|442620776|ref|NP_001262898.1| Rox8, isoform H [Drosophila melanogaster]
gi|23172126|gb|AAN13978.1| Rox8, isoform D [Drosophila melanogaster]
gi|211938549|gb|ACJ13171.1| FI04408p [Drosophila melanogaster]
gi|440217818|gb|AAN13977.2| Rox8, isoform E [Drosophila melanogaster]
gi|440217819|gb|AGB96277.1| Rox8, isoform G [Drosophila melanogaster]
gi|440217820|gb|AGB96278.1| Rox8, isoform H [Drosophila melanogaster]
Length = 470
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEV 61
N + TA+ +N ++ EK +K+ ATS N P T +FVG+LS +
Sbjct: 54 NYQAATTALTAMNKRLFLEKEIKVNWATSPG--NQPKTDISSHHHIFVGDLSPEIETETL 111
Query: 62 RELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
RE F P+G + C IVR+ Y FV + + I+ +NG + + ++
Sbjct: 112 REAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRT 168
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ KP +I S++ P T VF+ NL + + +
Sbjct: 95 NTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDT 152
Query: 65 FVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 153 FAAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 210
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 17/89 (19%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVG 50
N E A+ E+N + V + L + EAA K ++V
Sbjct: 275 NHESAEAAVAEMNEKEVKTQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVK 334
Query: 51 NLSDNTRAPEVRELFVPYGTVVECDIVRN 79
NL+D+ ++R+LF PYGT+ ++R+
Sbjct: 335 NLTDDIDDEKLRDLFTPYGTITSAKVMRD 363
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 37/172 (21%)
Query: 7 ENDEEGRTAIKELNG--------------QIVNEKP---------LKIEAATSRKGPNTP 43
E E+ A+++LNG Q NE+ LK+E T G N
Sbjct: 230 EKPEDAEEAVQKLNGKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVN-- 287
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKE 96
++V NL D +R+ F PYGT+ ++ + +GFV +PD K + E
Sbjct: 288 ---LYVKNLDDTIDDERLRKEFAPYGTITSAKVMLDEGRSKGFGFVCFSAPDEATKAVTE 344
Query: 97 LNGMMVDGKPMKVVVAGFISSILSCLNVIFFIRCG--RGGHWSKECPRAGNF 146
+NG +V KP+ V +A S L + R R H + ++G++
Sbjct: 345 MNGRIVGSKPLYVALAQRKEERKSHLASQYIQRVNSLRMQHIGQVYQQSGSY 396
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E T+I+++NG ++NEK + + SRK T V+V N ++
Sbjct: 136 HFETEESANTSIEKVNGMLLNEKKVYVGRFISRKEREKELGEKAKLFTNVYVKNFGEDLT 195
Query: 58 APEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGM-MVDGKPMKV 109
+R++F +G + ++ R +GFV + P D + +++LNG + DGK + V
Sbjct: 196 EEALRDMFEKFGPITSHRVMTKDGKSRGFGFVAFEKPEDAEEAVQKLNGKELSDGKVLYV 255
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 10/78 (12%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELN 98
VF+ NL + + F +G ++ C + ++ YGFVH ++ + N I+++N
Sbjct: 92 VFIKNLDKKIDNKAMYDTFSAFGNILSCKVAQDEKGQSKGYGFVHFETEESANTSIEKVN 151
Query: 99 GMMVDGKPMKVVVAGFIS 116
GM+++ K KV V FIS
Sbjct: 152 GMLLNEK--KVYVGRFIS 167
>gi|17944383|gb|AAL48083.1| RE71384p [Drosophila melanogaster]
Length = 470
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEV 61
N + TA+ +N ++ EK +K+ ATS N P T +FVG+LS +
Sbjct: 54 NYQAATTALTAMNKRLFLEKEIKVNWATSPG--NQPKTDISSHHHIFVGDLSPEIETETL 111
Query: 62 RELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
RE F P+G + C IVR+ Y FV + + I+ +NG + + ++
Sbjct: 112 REAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRT 168
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 15/117 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFV 66
E+G A++ELN ++ KP +I S++ P T VF+ NL + + F
Sbjct: 100 EDGEKALEELNYTVIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFA 157
Query: 67 PYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V I
Sbjct: 158 AFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEK--KVFVGHHI 212
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSDNTR 57
H E E AIK +NG ++NEK + K E + + T ++V N+ +
Sbjct: 182 HYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVS 241
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
E RELF +G + I R+ +GFV +I + + LN G+ + V
Sbjct: 242 DEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYV 301
>gi|681906|dbj|BAA06520.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 314
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRA 58
M + +E TA+++ N +N + L + A R + P P +V+VGNL +
Sbjct: 183 MSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDN 242
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKV 109
+ +LF +G VVE +V R +GFV + D ++N+ I L+G ++G+ ++V
Sbjct: 243 GRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 302
Query: 110 VVA 112
VA
Sbjct: 303 NVA 305
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 161 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 220
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK + V
Sbjct: 221 DGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 280
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 256 EKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 315
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 316 KNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 375
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 376 GSKPLYVALA 385
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 81 DAERALDTMNFDVMKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 138
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 139 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 192
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 166 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 225
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK + V
Sbjct: 226 DDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 285
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 261 EKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 320
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 321 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 380
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 381 GSKPLYVALA 390
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 86 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 143
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 144 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 197
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 15/117 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFV 66
E+G A++ELN ++ KP +I S++ P T VF+ NL + + F
Sbjct: 100 EDGEKALEELNYTVIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFA 157
Query: 67 PYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V I
Sbjct: 158 AFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEK--KVFVGHHI 212
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSDNTR 57
H E E AIK +NG ++NEK + K E + + T ++V N+ +
Sbjct: 182 HYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVS 241
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
+ R+LF +G + I R+ +GFV +I + + LN G+ + V
Sbjct: 242 DDDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYV 301
>gi|296424904|ref|XP_002841985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638239|emb|CAZ86176.1| unnamed protein product [Tuber melanosporum]
Length = 374
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 15/119 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVREL 64
N +G A++ELN ++ +P +I S++ P T VF+ NL + +
Sbjct: 103 NTADGERALEELNYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 160
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
F +G ++ C + R YGFVH ++ + N IK +NGM+++ K KV V I
Sbjct: 161 FAAFGNILSCKVAQDEFSNSRGYGFVHYETAEAANNAIKHVNGMLLNEK--KVFVGHHI 217
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 15/118 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E AIK +NG ++NEK + + +K + T V+V N+
Sbjct: 187 HYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFDEMKANFTNVYVKNIDPEVT 246
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELNGMMVDGKPM 107
E R +F YG + + R+ +GFV+ + K ++EL+ + G+ +
Sbjct: 247 DEEFRTMFENYGPITSASLSRDQDGVSRGFGFVNFQEHQHAAKAVEELHESELKGQTL 304
>gi|225712990|gb|ACO12341.1| Serine-arginine protein 55 [Lepeophtheirus salmonis]
gi|290462763|gb|ADD24429.1| Serine-arginine protein 55 [Lepeophtheirus salmonis]
gi|290562097|gb|ADD38445.1| Serine-arginine protein 55 [Lepeophtheirus salmonis]
Length = 250
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVD 103
++V+VGNL +N R +V +LF YG + E I YGFV D P D + + +++G
Sbjct: 5 SRVYVGNLPENVRERDVEKLFKEYGRIREVVIKSGYGFVEFDDPRDADDVVNDMDGKEFQ 64
Query: 104 GKPMKVVVA 112
G ++V +A
Sbjct: 65 GGRVRVEMA 73
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 15/117 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFV 66
E+G A++ELN ++ KP +I S++ P T VF+ NL + + F
Sbjct: 100 EDGEKALEELNYTVIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFA 157
Query: 67 PYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V I
Sbjct: 158 AFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEK--KVFVGHHI 212
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSDNTR 57
H E E AIK +NG ++NEK + K E + + T ++V N+ +
Sbjct: 182 HYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVS 241
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
E RELF +G + I R+ +GFV +I + + LN G+ + V
Sbjct: 242 DEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYV 301
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D+ +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK V++ N ++
Sbjct: 144 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ KP +I S++ P T VF+ NL + + +
Sbjct: 95 NTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDT 152
Query: 65 FVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 153 FAAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 210
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 17/89 (19%)
Query: 8 NDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVG 50
N E A+ E+N + V + L + EAA K ++V
Sbjct: 275 NHESAEAAVAEMNEKEVKSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVK 334
Query: 51 NLSDNTRAPEVRELFVPYGTVVECDIVRN 79
NL+D+ ++R+LF PYGT+ ++R+
Sbjct: 335 NLTDDIDDEKLRDLFTPYGTITSAKVMRD 363
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 26/134 (19%)
Query: 5 HMENDEEGRTAIKELNGQIV----------------NEKPLKIEAATSRKG--PNTPTTK 46
+ +N + A+++L+G ++ E LK + RK
Sbjct: 259 NFQNTDSAAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAELKAKFEQERKSRFEKLQGAN 318
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELN 98
+++ NL D+ +++ELF YGT+ C ++ + GFV SPD K + E+N
Sbjct: 319 LYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMN 378
Query: 99 GMMVDGKPMKVVVA 112
G M KP+ V VA
Sbjct: 379 GKMKGRKPLYVAVA 392
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 15/117 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 66
++ A++ LN VN KP++I S + P+ + VF+ NL + +R+ F
Sbjct: 87 QDAVNAMEHLNFTPVNGKPIRI--MISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTFA 144
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFI 115
+GTV+ C + + YGFV +S + + I++LNGM+++ K +V V FI
Sbjct: 145 AFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDK--QVYVGHFI 199
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 13/118 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLK----IEAATSRKGPNTPTTKVFVGNLSDNTRAPE 60
E++E +I++LNG ++N+K + I + + T V+V NL + T +
Sbjct: 169 QFESEESAEISIEKLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDDD 228
Query: 61 VRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMV-DGKPMKV 109
++ LF P+GT+ ++ + +GFV+ + D +++L+G ++ D K + V
Sbjct: 229 LKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLYV 286
>gi|403335220|gb|EJY66784.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 307
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 9 DEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPY 68
+E+ AIK ++ + KP+K+ A+ K VFVGNL ++ +R++F +
Sbjct: 71 EEDADYAIKIMHMVKLFGKPIKVNKASQDKRTQEVGANVFVGNLHEDVDEKMLRDVFSSF 130
Query: 69 GTVVECDIVRN--------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112
G V+ I+R+ YGFV D+ + I+ +NG + GKP+ V A
Sbjct: 131 GIVLSTKIMRDPETQVSKRYGFVSYDNFESSDASIQAMNGQYLCGKPIDVSYA 183
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E DE AIK +NG ++NEK + + +K + T ++V N+S
Sbjct: 194 HYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNISTEAS 253
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E RELF YG + + R+ +GFV+ + + K ++EL+G G+ + V
Sbjct: 254 DDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAVEELHGKDFRGQDLYV 313
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 13/110 (11%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 67
+G A++ELN ++ +P +I S++ P T VF+ NL + + F
Sbjct: 113 DGEKALEELNYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAA 170
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+G ++ C + ++ YGFVH ++ + ++ IK +NGM+++ K + V
Sbjct: 171 FGNILSCKVAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYV 220
>gi|195113787|ref|XP_002001449.1| GI21968 [Drosophila mojavensis]
gi|193918043|gb|EDW16910.1| GI21968 [Drosophila mojavensis]
Length = 335
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS 87
T KVFVG+L + E+R LF YG VVECDI+ GFVH+++
Sbjct: 3 TAKVFVGSLPSGCKPEELRRLFTNYGVVVECDIMNRCGFVHLET 46
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+ T K+F+G++ G E +R LF YG VVECD++ GFV
Sbjct: 1 MSTAKVFVGSLPSGCKPEELRRLFTNYGVVVECDIMNRCGFV 42
>gi|125775095|ref|XP_001358799.1| GA18869 [Drosophila pseudoobscura pseudoobscura]
gi|195144954|ref|XP_002013461.1| GL24152 [Drosophila persimilis]
gi|54638540|gb|EAL27942.1| GA18869 [Drosophila pseudoobscura pseudoobscura]
gi|194102404|gb|EDW24447.1| GL24152 [Drosophila persimilis]
Length = 464
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEV 61
N + TA+ +N ++ EK +K+ ATS N P T +FVG+LS +
Sbjct: 54 NYQAASTALTAMNKRLFLEKEIKVNWATSPG--NQPKTDISSHHHIFVGDLSPEIETETL 111
Query: 62 RELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
RE F P+G + C IVR+ Y FV + + I+ +NG + + ++
Sbjct: 112 REAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRT 168
>gi|209734900|gb|ACI68319.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|303657347|gb|ADM15872.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 114
Score = 51.2 bits (121), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKE 96
K+FVG LS +T + E F YG + +CD++ R +GFV D+P D +
Sbjct: 6 KLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDA 65
Query: 97 LNGMMVDGKPMKVVVAG 113
+NG +DG+ ++V AG
Sbjct: 66 MNGQSLDGRTIRVNEAG 82
>gi|146415246|ref|XP_001483593.1| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG---------PNTPTTKV-------- 47
+ EN E A+KE+N + ++ + L + A ++ +T K+
Sbjct: 285 NFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLLKYQGVNL 344
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNG 99
FV NL D+ + ++ E F P+GT+ ++ + +GFV SP + K I E+N
Sbjct: 345 FVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQ 404
Query: 100 MMVDGKPMKVVVA 112
M+ GKP+ V +A
Sbjct: 405 RMIQGKPLYVALA 417
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F+P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI ++NG ++N++ + + SRK T V++ N D+
Sbjct: 144 HFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMN 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++E+F YG + ++ + +GFV + D K + E+NG ++GK M V
Sbjct: 204 DERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV 263
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGRPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I ++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDR--KVFVGRFKS 175
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 35/138 (25%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI----------------------EAATSRKGPNT 42
+ EN ++ +++ LNG+ V+ K + EAA +G N
Sbjct: 254 NFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGAN- 312
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCI 94
++V NL D+ +++ELF +GT+ C ++R+ GFV SP + + +
Sbjct: 313 ----LYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARAL 368
Query: 95 KELNGMMVDGKPMKVVVA 112
E+NG M+ KP+ V +A
Sbjct: 369 AEMNGRMIVSKPLYVALA 386
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 59
+ +E AI++LNG ++N+K P + T VFV NL++ T
Sbjct: 163 QFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEE 222
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 105
+++ +F +G + ++R+ +GFV+ + + D + ++ LNG VDGK
Sbjct: 223 DLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGK 276
Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 15/119 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVREL 64
N + A+ LN +N P+++ S + P+ + + +F+ NL + +
Sbjct: 79 NPVDASRALDVLNFTPLNGNPIRV--MYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDT 136
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPDIN-KCIKELNGMMVDGKPMKVVVAGFI 115
F +G+++ C + + +GFV D+ + K I++LNGM+++ K +V V F+
Sbjct: 137 FSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDK--QVFVGPFL 193
>gi|226491636|ref|NP_001143694.1| uncharacterized protein LOC100276428 [Zea mays]
gi|195620112|gb|ACG31886.1| splicing factor, arginine/serine-rich 6 [Zea mays]
gi|448878170|gb|AGE46048.1| arginine/serine-rich splicing factor RS2Z39 transcript VI [Zea
mays]
Length = 353
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 25/125 (20%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
T+++V L+ TR+ ++ LF YG + E ++ R+Y F+ D D ++ +L+G VD
Sbjct: 11 TRLYVSRLATRTRSRDLEHLFGRYGRIREVELKRDYAFIEFSDHRDADEARYQLDGRDVD 70
Query: 104 GKPMKVVVA----------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFR 147
G + V A G C N CG GHW+++C +AG+++
Sbjct: 71 GSRIVVEFAKGVPRGSGGSREYMGRGPPPGTGRCFN------CGVDGHWARDC-KAGDWK 123
Query: 148 SSGCY 152
+ CY
Sbjct: 124 NK-CY 127
>gi|24649513|ref|NP_732942.1| Rox8, isoform B [Drosophila melanogaster]
gi|24649515|ref|NP_732943.1| Rox8, isoform C [Drosophila melanogaster]
gi|7301090|gb|AAF56224.1| Rox8, isoform C [Drosophila melanogaster]
gi|7301091|gb|AAF56225.1| Rox8, isoform B [Drosophila melanogaster]
Length = 464
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEV 61
N + TA+ +N ++ EK +K+ ATS N P T +FVG+LS +
Sbjct: 54 NYQAATTALTAMNKRLFLEKEIKVNWATSPG--NQPKTDISSHHHIFVGDLSPEIETETL 111
Query: 62 RELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
RE F P+G + C IVR+ Y FV + + I+ +NG + + ++
Sbjct: 112 REAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRT 168
>gi|156837090|ref|XP_001642579.1| hypothetical protein Kpol_1075p1a [Vanderwaltozyma polyspora DSM
70294]
gi|156113126|gb|EDO14721.1| hypothetical protein Kpol_1075p1a [Vanderwaltozyma polyspora DSM
70294]
Length = 264
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 30 KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR-------NYGF 82
+ EAA K +FV NL D+ +++E F P+GT++ ++R N+GF
Sbjct: 6 QYEAARLEKMTKYQGVNLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKSKNFGF 65
Query: 83 VHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
V +P + + I E N +V GKP+ V +A
Sbjct: 66 VCFSTPEEATRAITEKNQQIVAGKPLYVAIA 96
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F+P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI ++NG ++N++ + + SRK T V++ N D+
Sbjct: 144 HFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMN 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++E+F YG + ++ + +GFV + D K + E+NG ++GK M V
Sbjct: 204 DERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV 263
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGRPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I ++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDR--KVFVGRFKS 175
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVF-----------------V 49
E E+ + A+ E+NG+ +N K + + A + T + F V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ ++ ++ A+ +N ++ KP++I S++ P+ + +FV NL + +
Sbjct: 58 NFQHTKDAEHALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDKSINNKAL 115
Query: 62 RELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGF 114
+ +G ++ C++V + YGFVH ++ + + IK++NGM+++G+ KV V F
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR--KVFVGQF 173
Query: 115 IS 116
S
Sbjct: 174 KS 175
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AIK++NG ++N + + + SRK V++ N ++
Sbjct: 144 HFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E + AI+++NG ++N++ + + SRK T V++ N D+
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF YG + ++ R +GFV + D NK ++++NG ++GK
Sbjct: 204 DERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGK 259
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +V KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVVKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ D ++ I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR--KVFVGRFKS 175
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFV 49
E E+ A++++NG +N K + K E + +++
Sbjct: 239 EKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 24/132 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV-------- 47
+ E ++ + A++++NG+ +N +K ++ ++ RK +V
Sbjct: 237 NFEKHQDAQKAVEDMNGKEINGRMLYVGRAQKRMERQSELKRKFEQIKQERVSRYQGVNL 296
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGM 100
+V NL D +R+ F PYGT+ ++ + +GFV SP + K + E+NG
Sbjct: 297 YVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 101 MVDGKPMKVVVA 112
+V KP+ V +A
Sbjct: 357 IVSTKPLYVALA 368
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +++ +P++I S++ P + +F+ NL D+ + + F
Sbjct: 64 DAERALDTMNFEVIKGRPIRI--MWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V R YGFVH ++ + N+ I +NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSRGYGFVHFETHEAANRAIATMNGMLLNDR--KVFVGNFKS 175
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI +NG ++N++ + + SR+ T V++ N +
Sbjct: 144 HFETHEAANRAIATMNGMLLNDRKVFVGNFKSRREREAEYGAKAMEFTNVYIKNFGEEMS 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++E F +G + ++ + +GFV+ + D K ++++NG ++G+ + V
Sbjct: 204 NERLQETFSIFGKTLSVKVMTDNIGRSKGFGFVNFEKHQDAQKAVEDMNGKEINGRMLYV 263
>gi|443712169|gb|ELU05591.1| hypothetical protein CAPTEDRAFT_222188 [Capitella teleta]
Length = 225
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN----YGFVHI-DSPDINKCIKELNGMM 101
+F+G L +TR ++ + F YG ++ CD+ Y F+ D D +KE NG
Sbjct: 9 LFIGRLDKHTRTRDLEDRFEKYGRILRCDVKYGAEMAYAFLDFEDHRDAEDALKEENGRE 68
Query: 102 VDGKPMKVVVAGFISSILSCLNVIFF--IRCGRGGHWSKEC 140
G M V A + +C R GHW+++C
Sbjct: 69 YQGVSMVVEWAKGAPRRQQSSQQAYDECYKCHRSGHWARDC 109
>gi|195500212|ref|XP_002097277.1| GE24585 [Drosophila yakuba]
gi|194183378|gb|EDW96989.1| GE24585 [Drosophila yakuba]
Length = 665
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 8/104 (7%)
Query: 28 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE--CDIVRNYGFVHI 85
P+++ T G N +++VGNL+++ E+RE+F PYG + E + +N+ F+ +
Sbjct: 268 PIELPTETKFSGRN----RLYVGNLTNDITDDELREMFKPYGEIGEIFSNPEKNFTFLKV 323
Query: 86 D-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFI 128
D P+ K + L+G M G+ ++V A ++IL N+ F+
Sbjct: 324 DYHPNAEKAKRALDGSMRKGRQLRVRFAP-NATILRVSNLNQFV 366
>gi|475720|gb|AAA18380.1| RNA-binding protein 3 [Arabidopsis thaliana]
Length = 162
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRA 58
M + +E TA+++ N +N + L + A R + P P +V+VGNL +
Sbjct: 31 MSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDN 90
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKV 109
+ +LF +G VVE +V R +GFV + D ++N+ I L+G ++G+ ++V
Sbjct: 91 GRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 150
Query: 110 VVA 112
VA
Sbjct: 151 NVA 153
>gi|14572590|emb|CAC42828.1| hrp65-2 isoform [Chironomus tentans]
Length = 517
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVEC--DIVRNYGFVHID-SPDINKCIKELNGMM 101
++++GNL+ + E++ELF PYG + E + +N+ F+ ID + + K+L+G M
Sbjct: 113 NRLYIGNLTSDVTEEELKELFSPYGEISEAFINAEKNFAFLKIDYRANAERAKKDLDGRM 172
Query: 102 VDGKPMKVVVAGFISSI 118
KP+++ A ++I
Sbjct: 173 RKNKPIRIRFAPNATTI 189
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D+ +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK V++ N ++
Sbjct: 144 HFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAKVKEFPNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 15/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + VF+ NL N + + F
Sbjct: 64 DAERALDTMNFDMIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSA 121
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + NK I ++NGM+++GK KV V FI
Sbjct: 122 FGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGK--KVYVGKFI 175
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 35/136 (25%)
Query: 7 ENDEEGRTAIKELNGQIVNE-----------------------KPLKIEAATSRKGPNTP 43
E+ + A+ ELNG+ ++E + LKIE +G N
Sbjct: 240 EDPDAAEQAVLELNGKDISEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVN-- 297
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKE 96
++V NL D +R+ F P+GT+ ++ + +GFV P + K + E
Sbjct: 298 ---LYVKNLDDTIDDERLRKEFTPFGTITSAKVMMEEGRSKGFGFVCFSQPEEATKAVTE 354
Query: 97 LNGMMVDGKPMKVVVA 112
+NG +V KP+ V +A
Sbjct: 355 MNGRIVGSKPLYVALA 370
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E +I ++NG ++N K + + RK T V+V N ++
Sbjct: 145 HFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMT 204
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMV-DGKPMK 108
+++E+F YGT+ ++ R +GFV + PD + + ELNG + +GK M
Sbjct: 205 DDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKDISEGKCMY 264
Query: 109 V 109
V
Sbjct: 265 V 265
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E EE A++E+NG+ +N +K ++ +A R+ ++ ++
Sbjct: 226 EKHEEANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYI 285
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 286 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIV 345
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 346 GSKPLYVALA 355
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E + AI+++NG ++N++ + + SRK T V++ N D+
Sbjct: 131 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 190
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF YG + ++ + +GFV + + NK ++E+NG ++GK
Sbjct: 191 DERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGK 246
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 51 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 108
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ D ++ I+++NGM+++ + KV V F S
Sbjct: 109 FGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR--KVFVGRFKS 162
>gi|681908|dbj|BAA06521.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 304
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRA 58
M + +E TA+++ N +N + L + A R + P P +V+VGNL +
Sbjct: 173 MSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDN 232
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKV 109
+ +LF +G VVE +V R +GFV + D ++N+ I L+G ++G+ ++V
Sbjct: 233 GRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 292
Query: 110 VVA 112
VA
Sbjct: 293 NVA 295
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 26 EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY----- 80
E K EA + +++ NL D +RELF +GT+ C ++R+
Sbjct: 305 ELKAKFEAERRERMEKMAGANLYIKNLEDGADDETLRELFKEFGTITSCRVMRDASGVSR 364
Query: 81 --GFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
FV SP + + + ELNG MV KP+ V +A
Sbjct: 365 GSAFVAFSSPEEATRAVTELNGKMVGAKPLYVALA 399
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 13/107 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 66
++ AI LN Q+VN KP++I S++ P + +F+ NL + +R+ F
Sbjct: 95 QDAARAIDVLNFQVVNGKPIRI--LYSQRDPTIRKSGVGNIFIKNLDKDIDTVALRDTFA 152
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGK 105
+G +V + + YGF+ D+ K I+++NGM ++ K
Sbjct: 153 QFGNIVSAKVATDGQGNSKGYGFIQFDTEAAAKEAIEKVNGMELNDK 199
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 11/106 (10%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK---VFVGNLSDNTRAPEV 61
+ + + AI+++NG +N+K + + R T TK VFV NL D E+
Sbjct: 177 QFDTEAAAKEAIEKVNGMELNDKVVYVGPFQRRAERGTTETKFNNVFVKNLGDEVTDEEL 236
Query: 62 RELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
R++F +G V I ++ +GFV ++P D +K ++EL+G
Sbjct: 237 RKVFEGFGPVTSVMISKDEDGKSKGFGFVCYETPEDASKAVEELDG 282
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHI-DSPDIN 91
N T ++VG+L + ++ ELF G VV + R+ Y +V+ + D
Sbjct: 39 NASNTSLYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDAA 98
Query: 92 KCIKELNGMMVDGKPMKVV 110
+ I LN +V+GKP++++
Sbjct: 99 RAIDVLNFQVVNGKPIRIL 117
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 15/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + VF+ NL N + + F
Sbjct: 64 DAERALDTMNFDMIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSA 121
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + NK I ++NGM+++GK KV V FI
Sbjct: 122 FGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGK--KVYVGKFI 175
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E +I ++NG ++N K + + RK T V+V N ++
Sbjct: 145 HFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMT 204
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMV-DGKPMK 108
+++E+F YGT+ ++ R +GFV + PD + + ELNG V +GK M
Sbjct: 205 DDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMY 264
Query: 109 V 109
V
Sbjct: 265 V 265
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 12 GRTAIKELNGQIVNEK--PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 69
GR K Q + K LK+E + +G N ++V NL D+ +R F P+G
Sbjct: 266 GRAQKKAERQQELKRKFEQLKLERLSRYQGVN-----LYVKNLDDSINDERLRREFAPFG 320
Query: 70 TVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
T+ ++ + +GFV +P + K + E+NG ++ KP+ V +A
Sbjct: 321 TITSAKVMMEDGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALA 370
>gi|405954502|gb|EKC21922.1| Splicing factor, arginine/serine-rich 6 [Crassostrea gigas]
Length = 231
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 36 SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN----YGFV-HIDSPDI 90
SR+G + +F+G LS NT+ + ++F PYG ++ CD+ YGFV + D D
Sbjct: 2 SRRGDGS----LFIGRLSKNTQPRHLEDVFEPYGRLIRCDVKYGAEMAYGFVDYEDRRDA 57
Query: 91 NKCIKELNGMMVDGKPMKVVVAG-------FISSILSCLNVIFFIRCGRGGHWSKECPRA 143
+K NG + G ++V A SS RC R GH++++CP
Sbjct: 58 EDALKYENGREICGSSIRVEWAKGNPRRPYAASSNRGGGMYDECYRCHRTGHFARDCPND 117
Query: 144 GNF 146
++
Sbjct: 118 SSY 120
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 15/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + VF+ NL N + + F
Sbjct: 64 DAERALDTMNFDMIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSA 121
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + NK I ++NGM+++GK KV V FI
Sbjct: 122 FGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGK--KVYVGKFI 175
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E +I ++NG ++N K + + RK T V+V N ++
Sbjct: 145 HFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMT 204
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMV-DGKPMK 108
+++E+F YGT+ ++ R +GFV + PD + + ELNG V +GK M
Sbjct: 205 DDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMY 264
Query: 109 V 109
V
Sbjct: 265 V 265
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 12 GRTAIKELNGQIVNEK--PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 69
GR K Q + K LK+E + +G N ++V NL D+ +R F P+G
Sbjct: 266 GRAQKKAERQQELKRKFEQLKLERLSRYQGVN-----LYVKNLDDSINDERLRREFAPFG 320
Query: 70 TVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
T+ ++ + +GFV +P + K + E+NG ++ KP+ V +A
Sbjct: 321 TITSAKVMMEDGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALA 370
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 15/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + VF+ NL N + + F
Sbjct: 64 DAERALDTMNFDMIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSA 121
Query: 68 YGTVVECDIVRN-------YGFVHIDSPDI-NKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + NK I ++NGM+++GK KV V FI
Sbjct: 122 FGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGK--KVYVGKFI 175
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 29 LKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGF 82
LKIE +G N ++V NL D +R+ F P+GT+ ++ + +GF
Sbjct: 208 LKIERLNRYQGVN-----LYVKNLDDTIDDERLRKEFTPFGTITSAKVMMEEGRSKGFGF 262
Query: 83 VHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
V P + K + E+NG +V KP+ V +A
Sbjct: 263 VCFSQPEEATKAVTEMNGRIVGSKPLYVALA 293
>gi|195573327|ref|XP_002104645.1| GD18328 [Drosophila simulans]
gi|194200572|gb|EDX14148.1| GD18328 [Drosophila simulans]
Length = 824
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEV 61
N + TA+ +N ++ EK +K+ ATS N P T +FVG+LS +
Sbjct: 54 NYQAASTALTAMNKRLFLEKEIKVNWATS--PGNQPKTDISSHHHIFVGDLSPEIETETL 111
Query: 62 RELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
RE F P+G + C IVR+ Y FV + + I+ +NG + + ++
Sbjct: 112 REAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRT 168
>gi|346974495|gb|EGY17947.1| polyadenylate-binding protein [Verticillium dahliae VdLs.17]
Length = 759
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E DE AIK +NG ++NEK + + +K + T V+V N++
Sbjct: 195 HYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINSEAS 254
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E R+LF YG V + R+ +GFV+ + + ++ ++ELNG G+ + V
Sbjct: 255 DDEFRDLFTKYGEVTSSSLARDQEGKSRGFGFVNFTTHEAASQAVEELNGKDFRGQDLYV 314
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 19/118 (16%)
Query: 11 EGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 65
+G A++ELN ++N +P +I + A + G VF+ NL + + F
Sbjct: 114 DGEKALEELNYTVINGRPCRIMWSQRDPALRKNG----QGNVFIKNLDVAIDNKALHDTF 169
Query: 66 VPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + + IK +NGM+++ K KV V I
Sbjct: 170 AAFGNILSCKVAQDEHGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEK--KVYVGHHI 225
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E DE AIK +NG ++NEK + + +K + T V+V N+++
Sbjct: 194 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVT 253
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E RELF +G V + R+ +GFV+ + + + + ELNG G+ + V
Sbjct: 254 DEEFRELFAKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYV 313
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 57/110 (51%), Gaps = 13/110 (11%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 67
+G A++ELN ++ +P +I S++ P T +F+ NL + + F
Sbjct: 113 DGEKALEELNYTLIKGRPCRI--MWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAA 170
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+G ++ C + ++ YGFVH ++ + ++ IK +NGM+++ K + V
Sbjct: 171 FGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV 220
>gi|116747535|ref|YP_844222.1| RNP-1 like RNA-binding protein [Syntrophobacter fumaroxidans MPOB]
gi|116696599|gb|ABK15787.1| RNP-1 like RNA-binding protein [Syntrophobacter fumaroxidans MPOB]
Length = 122
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPDI-NKCI 94
+ K++VGNLS T + ++RELF GTV +V R +GFV + + + K I
Sbjct: 2 SMKLYVGNLSFQTSSEQLRELFSQVGTVESATVVEDRESGRSRGFGFVEMSTKEEGQKAI 61
Query: 95 KELNGMMVDGKPMKVVVA 112
ELNG +G+P+ V A
Sbjct: 62 AELNGKDFNGRPLTVNEA 79
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVF-----------------V 49
E E+ + A+ E+NG+ +N K + + A + T + F V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ ++ ++ A+ +N ++ KP++I S++ P+ + +FV NL + +
Sbjct: 58 NFQHTKDAEHALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDKSINNKAL 115
Query: 62 RELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGF 114
+ +G ++ C++V + YGFVH ++ + + IK++NGM+++G+ KV V F
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR--KVFVGQF 173
Query: 115 IS 116
S
Sbjct: 174 KS 175
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AIK++NG ++N + + + SRK V++ N ++
Sbjct: 144 HFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|34922660|sp|Q9U1N0.1|HRP65_CHITE RecName: Full=Hrp65 protein; AltName: Full=Ct-Hrp65
gi|6687398|emb|CAB64926.1| Hrp65 protein [Chironomus tentans]
gi|14572591|emb|CAC42829.1| hrp65-1 isoform [Chironomus tentans]
Length = 535
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVEC--DIVRNYGFVHID-SPDINKCIKELNGMM 101
++++GNL+ + E++ELF PYG + E + +N+ F+ ID + + K+L+G M
Sbjct: 113 NRLYIGNLTSDVTEEELKELFSPYGEISEAFINAEKNFAFLKIDYRANAERAKKDLDGRM 172
Query: 102 VDGKPMKVVVAGFISSI 118
KP+++ A ++I
Sbjct: 173 RKNKPIRIRFAPNATTI 189
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E DE AIK +NG ++NEK + + +K + T V+V N+++
Sbjct: 194 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVT 253
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E RELF +G V + R+ +GFV+ + + + + ELNG G+ + V
Sbjct: 254 DEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYV 313
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 57/110 (51%), Gaps = 13/110 (11%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 67
+G A++ELN ++ +P +I S++ P T +F+ NL + + F
Sbjct: 113 DGEKALEELNYTLIKGRPCRI--MWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAA 170
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+G ++ C + ++ YGFVH ++ + ++ IK +NGM+++ K + V
Sbjct: 171 FGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV 220
>gi|332376136|gb|AEE63208.1| unknown [Dendroctonus ponderosae]
Length = 371
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATS-RKGPNTPTTK---VFVGNLSDNTRAPEVRE 63
N + TA+ +N ++ +K +K+ ATS P T T+ +FVG+LS +RE
Sbjct: 55 NHQSASTALIAMNKRVFLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETDTLRE 114
Query: 64 LFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
F P+G + C IVR+ Y FV + + I+ +NG + + ++
Sbjct: 115 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIQAMNGQWLGSRSIRT 169
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 73 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 132
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPM 107
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK +
Sbjct: 133 DGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAI 190
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 168 EKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 227
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 228 KNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 287
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 288 GSKPLYVALA 297
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 58/108 (53%), Gaps = 14/108 (12%)
Query: 19 LNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECD 75
+N ++ KP++I S++ P+ + VF+ NL ++ + + F +G ++ C
Sbjct: 1 MNFDVMKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCK 58
Query: 76 IV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 59 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 104
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVF-----------------V 49
E E+ + A+ E+NG+ +N K + + A + T + F V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ ++ ++ A+ +N ++ KP++I S++ P+ + +FV NL + +
Sbjct: 58 NFQHTKDAEHALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDKSINNKAL 115
Query: 62 RELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGF 114
+ +G ++ C++V + YGFVH ++ + + IK++NGM+++G+ KV V F
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR--KVFVGQF 173
Query: 115 IS 116
S
Sbjct: 174 KS 175
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AIK++NG ++N + + + SRK V++ N ++
Sbjct: 144 HFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + +++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVELMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|15294254|gb|AAK95304.1|AF410318_1 AT4g24770/F22K18_30 [Arabidopsis thaliana]
gi|23505889|gb|AAN28804.1| At4g24770/F22K18_30 [Arabidopsis thaliana]
Length = 329
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRA 58
M + +E TA+++ N +N + L + A R + P P +V+VGNL +
Sbjct: 198 MSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDN 257
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKV 109
+ +LF +G VVE +V R +GFV + D ++N+ I L+G ++G+ ++V
Sbjct: 258 GRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
Query: 110 VVA 112
VA
Sbjct: 318 NVA 320
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVF-----------------V 49
E E+ + A+ E+NG+ +N K + + A + T + F V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ ++ ++ A+ +N ++ KP++I S++ P+ + +FV NL + +
Sbjct: 58 NFQHTKDAEHALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDKSINNKAL 115
Query: 62 RELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGF 114
+ +G ++ C++V + YGFVH ++ + + IK++NGM+++G+ KV V F
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR--KVFVGQF 173
Query: 115 IS 116
S
Sbjct: 174 KS 175
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AIK++NG ++N + + + SRK V++ N ++
Sbjct: 144 HFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFV 49
E E+ + A+ E+NG+ +N K + + A R T + ++V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKRVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVF-----------------V 49
E E+ + A+ E+NG+ +N K + + A + T + F V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ ++ ++ A+ +N ++ KP++I S++ P+ + +FV NL + +
Sbjct: 58 NFQHTKDAEHALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDKSINNKAL 115
Query: 62 RELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGF 114
+ +G ++ C++V + YGFVH ++ + + IK++NGM+++G+ KV V F
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR--KVFVGQF 173
Query: 115 IS 116
S
Sbjct: 174 KS 175
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AIK++NG ++N + + + SRK V++ N ++
Sbjct: 144 HFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|194696360|gb|ACF82264.1| unknown [Zea mays]
gi|414869196|tpg|DAA47753.1| TPA: ribonucleoprotein [Zea mays]
Length = 275
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-PNTP------TTK--VFVGNLSDNT 56
M ++EE A+ LN I+N++ +K++ A RK P P T K VFVGNL+
Sbjct: 118 MGSEEEALAALTHLNSTILNDRKIKVDFARPRKKQPKQPAVVSDDTEKYVVFVGNLTWRV 177
Query: 57 RAPEVRELFVPYGTVVECDIV---------RNYGFVHIDSPD-INKCIKELNGMMVDGKP 106
R +RELF VV +++ Y FV S + I NG ++ G+P
Sbjct: 178 RNRHLRELFASAPGVVSAEVIFHTTTPRRSAGYAFVSFSSKESAGAAISAFNGKILMGRP 237
Query: 107 MKVV 110
+ V+
Sbjct: 238 INVM 241
>gi|14572592|emb|CAC42830.1| hrp65-3 isoform [Chironomus tentans]
Length = 512
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVEC--DIVRNYGFVHID-SPDINKCIKELNGMM 101
++++GNL+ + E++ELF PYG + E + +N+ F+ ID + + K+L+G M
Sbjct: 113 NRLYIGNLTSDVTEEELKELFSPYGEISEAFINAEKNFAFLKIDYRANAERAKKDLDGRM 172
Query: 102 VDGKPMKVVVAGFISSI 118
KP+++ A ++I
Sbjct: 173 RKNKPIRIRFAPNATTI 189
>gi|328871249|gb|EGG19620.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 299
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDG 104
+++VG S T ++ E F +G ++ D+ + FV D+ N+ I E++G VDG
Sbjct: 61 RIYVGKFSSRTGEKDLEETFKKFGKILSLDMKAGFAFVEFDNEKSANQAIDEMDGKEVDG 120
Query: 105 KPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECP 141
+ K++V + + R GRG HW++ CP
Sbjct: 121 E--KLIVQKSHGGRKRSSDECYLCR-GRG-HWARNCP 153
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK + V
Sbjct: 204 DGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 263
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVMKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E + AI+++NG ++N++ + + SRK T V++ N D+
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMN 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF YG + ++ R +GF+ + D NK ++++NG ++GK
Sbjct: 204 DERLKELFDKYGKTLSVKVMTDPTGKSRGFGFISYEKHEDANKAVEDMNGTELNGK 259
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++++NG +N +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +V KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVVKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ D ++ I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|238010804|gb|ACR36437.1| unknown [Zea mays]
Length = 262
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 18/125 (14%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAA------TSRKGPNTP---TTKVFVGNLSDNT 56
M + EE A+ + NG +++ + L++ + S + P P +V+VGNLS
Sbjct: 129 MSSVEEVEVAVDQFNGYVLDGRSLRVNSGPPPPRDRSSRSPQRPRGDANRVYVGNLSWGV 188
Query: 57 RAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPM 107
+ LF G V+E I+ R +GFV S ++ I L+G +DG+ +
Sbjct: 189 DNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDGADLDGRQI 248
Query: 108 KVVVA 112
+V VA
Sbjct: 249 RVTVA 253
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK + V
Sbjct: 204 DGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 263
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVMKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|1843458|gb|AAB81555.1| Rbm [Mus musculus]
Length = 380
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVV--------ECDIVRNYGFVHIDSP-DINKCIKE 96
K+F+G L+ TR ++E+F +G V E R + F+ P D +KE
Sbjct: 9 KIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKNAVKE 68
Query: 97 LNGMMVDGKPMKVVVAGFISSILS-----------CLNVIFFIRCGRGGH 135
+NG+++DGK +KV A SS+ S ++CGRGG
Sbjct: 69 MNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGR 118
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 24/132 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVF---------------- 48
+ E E+ + A++E+NG+ +N K + + A + T + F
Sbjct: 306 NFERHEDAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNL 365
Query: 49 -VGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGM 100
V NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG
Sbjct: 366 YVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR 425
Query: 101 MVDGKPMKVVVA 112
+V KP+ + +A
Sbjct: 426 IVATKPLYIALA 437
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A++ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 133 DAERALETMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSA 190
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ D + I ++NGM+++ + KV V F S
Sbjct: 191 FGNILSCKVVCDEHGSKGYGFVHFETRDAAERAIDKMNGMLLNDR--KVFVGRFKS 244
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E + AI ++NG ++N++ + + SRK T V++ N ++
Sbjct: 213 HFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 272
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ LF +G + ++ + +GFV+ + D K ++E+NG ++GK + V
Sbjct: 273 DLRLKRLFGKFGPALSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYV 332
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK + V
Sbjct: 204 DGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 263
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVMKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|15233980|ref|NP_194208.1| ribonucleoprotein [Arabidopsis thaliana]
gi|464662|sp|Q04836.1|ROC3_ARATH RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=RNA-binding protein 1/2/3; Short=AtRBP33; AltName:
Full=RNA-binding protein RNP-T; AltName:
Full=RNA-binding protein cp31; Flags: Precursor
gi|16490|emb|CAA46347.1| RNA-binding protein [Arabidopsis thaliana]
gi|387569|gb|AAA32860.1| 31 kDa RNA binding protein [Arabidopsis thaliana]
gi|475718|gb|AAA18378.1| RNA-binding protein 1 [Arabidopsis thaliana]
gi|4220513|emb|CAA22986.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|7269328|emb|CAB79387.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|332659554|gb|AEE84954.1| ribonucleoprotein [Arabidopsis thaliana]
gi|737169|prf||1921382A RNA-binding protein
Length = 329
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRA 58
M + +E TA+++ N +N + L + A R + P P +V+VGNL +
Sbjct: 198 MSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDN 257
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKV 109
+ +LF +G VVE +V R +GFV + D ++N+ I L+G ++G+ ++V
Sbjct: 258 GRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
Query: 110 VVA 112
VA
Sbjct: 318 NVA 320
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 161 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 220
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK + V
Sbjct: 221 DGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 280
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 256 EKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 315
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 316 KNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 375
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 376 GSKPLYVALA 385
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 81 DAERALDTMNFDVMKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 138
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 139 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 192
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E DE AIK +NG ++NEK + + +K + T +++ N+S
Sbjct: 195 HYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYIKNISTEAS 254
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E RELF YG + + R+ +GFV+ + + K ++EL+G G+ + V
Sbjct: 255 DDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAVEELHGKDFRGQDLYV 314
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 13/110 (11%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 67
+G A++ELN ++ +P +I S++ P T VF+ NL + + F
Sbjct: 114 DGEKALEELNYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAA 171
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+G ++ C + ++ YGFVH ++ + ++ IK +NGM+++ K + V
Sbjct: 172 FGNILSCKVAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYV 221
>gi|395394008|ref|NP_001257441.1| RNA-binding motif protein, Y chromosome, family 1 member B [Mus
musculus]
gi|341942161|sp|Q60990.3|RBY1B_MOUSE RecName: Full=RNA-binding motif protein, Y chromosome, family 1
member B; AltName: Full=RNA-binding motif protein 1
Length = 380
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVV--------ECDIVRNYGFVHIDSP-DINKCIKE 96
K+F+G L+ TR ++E+F +G V E R + F+ P D +KE
Sbjct: 9 KIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKNAVKE 68
Query: 97 LNGMMVDGKPMKVVVAGFISSILS-----------CLNVIFFIRCGRGGH 135
+NG+++DGK +KV A SS+ S ++CGRGG
Sbjct: 69 MNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGR 118
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D+ +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 19/118 (16%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI---------EAATSRKGPNTPTTKVFVGNLSDN 55
H E E AI+++NG ++N++ + + EA K P V++ N ++
Sbjct: 144 HFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAKAKEFPN--VYIKNFGED 201
Query: 56 TRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
+++LF +G + ++ + +GFV + D K + E+NG ++GK
Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 15/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + VF+ NL N + + F
Sbjct: 64 DAERALDTMNFDMIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSA 121
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + NK I +NGM+++GK KV V FI
Sbjct: 122 FGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK--KVYVGKFI 175
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E +I +NG ++N K + + RK T V+V N ++
Sbjct: 145 HFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMT 204
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMV-DGKPMK 108
+++E+F YGT+ ++ R +GFV + PD + + ELNG V +GK M
Sbjct: 205 DDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMY 264
Query: 109 V 109
V
Sbjct: 265 V 265
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 12 GRTAIKELNGQIVNEK--PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 69
GR K Q + K LK+E +G N ++V NL D+ +R+ F P+G
Sbjct: 266 GRAQKKAERQQELKRKFEQLKLERLNRYQGVN-----LYVKNLDDSIDDERLRKEFAPFG 320
Query: 70 TVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
T+ ++ + +GFV +P + K + E+NG ++ KP+ V +A
Sbjct: 321 TITSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALA 370
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E + AI+++NG ++N++ + + SRK T V++ N D+
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF YG + ++ R +GFV + D NK ++++NG ++GK
Sbjct: 204 DERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGK 259
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +V KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVVKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ D ++ I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR--KVFVGRFKS 175
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFV 49
E E+ A++++NG +N K + K E + +++
Sbjct: 239 EKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-------EAATSRKGPNTPTTKVFVGNLSDNTR 57
H E E AIKE+NG +V E+ + + + R+ T V+V N +D T
Sbjct: 152 HFETREAADKAIKEMNGSLVKERKVFVGQFKRPNQREEERRAKMEQFTNVYVKNFADGTT 211
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
+ E+F YG + I+ + +GF+ + D + I+E+NG G+ + V
Sbjct: 212 DEYLLEIFSQYGPLSSVKIMTDDSGKSKGFGFIRFECHADAKRAIEEVNGKQFGGRKIYV 271
Query: 110 VVA 112
A
Sbjct: 272 SRA 274
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 18/117 (15%)
Query: 10 EEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
E+ A+ +N +++ KP++I + + R G VFV +L + E+ +L
Sbjct: 71 EDAGHALNTMNFDVLHGKPVRIMWCHRDPSLRRSG----VGNVFVNHLDASIDNKELYDL 126
Query: 65 FVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGF 114
F +GT++ C +V + +GFVH ++ + +K IKE+NG +V K KV V F
Sbjct: 127 FAGFGTILSCKVVSDENGPKGHGFVHFETREAADKAIKEMNGSLV--KERKVFVGQF 181
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNG 99
+FV NL+++T +R++F P+GTV ++ + +GFV S + K ++E++G
Sbjct: 304 LFVKNLAESTDDEHLRKIFAPFGTVTSAKVIVKGGRRKGFGFVSFSSREEAKKAVEEMHG 363
Query: 100 MMVDGKPMKVVVAGF 114
M+ +P+ V A +
Sbjct: 364 KMLSARPLYVSYARY 378
>gi|344229776|gb|EGV61661.1| hypothetical protein CANTEDRAFT_135600 [Candida tenuis ATCC 10573]
Length = 228
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 65
M ++E+ + +I E + +++P+ EAA P + KVFV L T E+ E F
Sbjct: 1 MSDNEQEQHSIDEQSPVNTHDEPMGEEAA-----PALESRKVFVRPLDYQTPTEEIEEFF 55
Query: 66 VPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
P G + E ++R Y FV + K + E N G+P+ V +A
Sbjct: 56 APAGAIAEVQMMRGYAFVSFEEDGAAQKAVDEFNNTDFHGQPLIVELA 103
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 207 ERHEDAQKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYV 266
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D+ +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 267 KNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 326
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 327 ATKPLYVALA 336
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 19/118 (16%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI---------EAATSRKGPNTPTTKVFVGNLSDN 55
H E E AI+++NG ++N++ + + EA K P V++ N ++
Sbjct: 112 HFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAKAKEFPN--VYIKNFGED 169
Query: 56 TRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
+++LF +G + ++ + +GFV + D K + E+NG ++GK
Sbjct: 170 MDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 227
>gi|475719|gb|AAA18379.1| RNA-binding protein 2 [Arabidopsis thaliana]
Length = 315
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRA 58
M + +E TA+++ N +N + L + A R + P P +V+VGNL +
Sbjct: 184 MSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDN 243
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKV 109
+ +LF +G VVE +V R +GFV + D ++N+ I L+G ++G+ ++V
Sbjct: 244 GRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 303
Query: 110 VVA 112
VA
Sbjct: 304 NVA 306
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ KP +I S++ P T VF+ NL + +
Sbjct: 104 NTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 161
Query: 65 FVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 219
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 17/106 (16%)
Query: 10 EEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNL 52
E + A++E+N + + + L + EAA K ++V NL
Sbjct: 286 ESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNL 345
Query: 53 SDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELN 98
+D+ ++RELF PYGT+ ++R+ SPD KE +
Sbjct: 346 TDDIDDEKLRELFGPYGTITSAKVMRDTNVERDQSPDSAGKEKEAD 391
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + S+K + T V++ NL
Sbjct: 188 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEID 247
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELN 98
E R++F +G + + R+ +GFV+ + + ++E+N
Sbjct: 248 DDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMN 296
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----------------EAATSRKGPNTPTTKV 47
+ EN E+ A+ L+ N K L + E+A K +
Sbjct: 281 NFENHEQAAKAVDTLHDTDFNGKKLFVSRAQKKAEREEELRKSYESAKMEKLSKYQGVNL 340
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNG 99
++ NL D+ ++R F P+GT+ C ++R+ +GFV SPD K + E+N
Sbjct: 341 YIKNLEDDVDDEKLRAEFEPFGTITSCKVMRDDKGTSKGFGFVCFSSPDEATKAVAEMNN 400
Query: 100 MMVDGKPMKVVVA 112
M+ KP+ V +A
Sbjct: 401 KMIGSKPLYVSLA 413
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 15/123 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E +AIK +NG ++N+K + + SRK + T ++V NL
Sbjct: 188 HYETAEAAESAIKAVNGMLLNDKKVYVGYHISRKERQSKLEEMRAHFTNLYVKNLDLEVT 247
Query: 58 APEVRELFVPYGTVVECDI-------VRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+ ELF +G V I + +GFV+ ++ + K + L+ +GK + V
Sbjct: 248 QDQFVELFSQFGAVTSAVIQTDEEGKSKGFGFVNFENHEQAAKAVDTLHDTDFNGKKLFV 307
Query: 110 VVA 112
A
Sbjct: 308 SRA 310
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ KP +I S++ P T VF+ NL + +
Sbjct: 99 NTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 156
Query: 65 FVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 157 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 214
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 30 KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD 89
+ EAA K ++V NL+D+ ++RELF PYGT+ ++R+ +P+
Sbjct: 318 QYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDTNIERTQTPE 377
Query: 90 INK 92
+K
Sbjct: 378 SDK 380
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + S+K + T V++ N+ +
Sbjct: 183 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVT 242
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELN 98
E RELF +G + + R+ +GFV+ + + + E+N
Sbjct: 243 EEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMN 291
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 24/132 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------V 47
+ E E+ + A++E+NG+ +N K + + A + T + +
Sbjct: 237 NFERHEDAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNL 296
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGM 100
+V NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRNKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 101 MVDGKPMKVVVA 112
+V KP+ + +A
Sbjct: 357 IVATKPLYIALA 368
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A++ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALETMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ D + I ++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDEHGSKGYGFVHFETRDAAERAIDKMNGMLLNDR--KVFVGRFKS 175
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E + AI ++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ LF +G + ++ + +GFV+ + D K ++E+NG ++GK + V
Sbjct: 204 DLRLKRLFGKFGPSLSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYV 263
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 15/123 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEV 61
+ N E+G A+ ELN ++ +P +I S++ P+ T VF+ NL +
Sbjct: 113 NFHNMEDGEKALDELNYTLIKGRPCRI--MWSQRDPSLRKMGTGNVFIKNLDPAIDNKAL 170
Query: 62 RELFVPYGTVVECDI-------VRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAG 113
+ F +G ++ C + + YGFVH DS + N I+ +NGM+++ K KV V
Sbjct: 171 HDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDK--KVYVGH 228
Query: 114 FIS 116
+S
Sbjct: 229 HVS 231
Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 23/114 (20%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFV 66
E +EE R A +++ K+E +G N +F+ NL D ++ F
Sbjct: 327 EREEELRKAYEQM----------KLEKMNKYQGVN-----LFIKNLQDEVDDERLKAEFS 371
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
+GT+ I+ + +GFV +P+ NK + E+N M+ GKP+ V +A
Sbjct: 372 AFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 425
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H ++ E AI+ +NG ++N+K + + SR+ + T V++ NL
Sbjct: 200 HFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEIT 259
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E +LF +G + +V R +GFV+ + + K + ELN GK + V
Sbjct: 260 EQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYV 319
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E DE + AIK +NG ++NEK + + +K + T V+V N+S
Sbjct: 189 HYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNISPEVT 248
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E RELF +G V I R +GFV+ + + K ++ELN + G+ + V
Sbjct: 249 DDEFRELFERHGDVTSSSIAREQDGKSRGFGFVNFTTHEAAAKAVEELNNKDLHGQELYV 308
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 13/110 (11%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 67
+G A++ELN ++ +P +I S++ P T VF+ NL + + F
Sbjct: 108 DGEKALEELNYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAA 165
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+G ++ C + ++ YGFVH ++ + + IK +NGM+++ K + V
Sbjct: 166 FGNILSCKVAQDENGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYV 215
>gi|356505156|ref|XP_003521358.1| PREDICTED: uncharacterized protein LOC100812698 [Glycine max]
Length = 287
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 22/123 (17%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG+LS TR+ ++ F YG V D+ ++ FV P D + L+G V
Sbjct: 10 NTRLYVGHLSSRTRSRDLERAFSRYGRVRGVDMKNDFAFVDFSDPRDADDARYNLDGRDV 69
Query: 103 DGKPMKVVVA-------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSS 149
DG + V A G C N CG GHW+++C +AG++++
Sbjct: 70 DGSRIIVEFAKGAPRGSREYLGRGPPPGSGRCFN------CGLDGHWARDC-KAGDWKNK 122
Query: 150 GCY 152
CY
Sbjct: 123 -CY 124
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 26/134 (19%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR-------KGPNTPTTK----------- 46
+ EN E+ A++ LNG+ V++K + A + KG T K
Sbjct: 257 NFENAEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLN 316
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELN 98
+++ NL D+ +++E+F +GT+ I+R+ GFV +P + ++ + E+N
Sbjct: 317 LYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMN 376
Query: 99 GMMVDGKPMKVVVA 112
G M+ KP+ V VA
Sbjct: 377 GKMIVSKPLYVAVA 390
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGNLSDNTRAP 59
E ++ + AI +LNG ++N+K + + ++ + +K V+V NLS++
Sbjct: 166 QFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTED 225
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 105
+++ F YGT+ ++R+ +GFV+ + + D K ++ LNG VD K
Sbjct: 226 DLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDK 279
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 17/120 (14%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
N ++ A+ LN +N K +++ + +SRK + T +F+ NL + +
Sbjct: 82 NPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRK---SGTANIFIKNLDKTIDHKALHD 138
Query: 64 LFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
F +G ++ C I + YGFV ++ D I +LNGM+++ K +V V F+
Sbjct: 139 TFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDK--QVFVGHFL 196
>gi|403294352|ref|XP_003938154.1| PREDICTED: RNA-binding protein 4-like [Saimiri boliviensis
boliviensis]
Length = 143
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ IEA+ + + +TK+ VG++S E+R
Sbjct: 41 HIEDKTAAEEAIRNLHHCKLHGVHTNIEAS---ENNSKTSTKLHVGSISPTCTKKELRTQ 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
F G VVECDI+++Y FVH++ + D + I+ L+ G
Sbjct: 98 FEECGLVVECDIMKDYAFVHMERAEDAAEAIRGLDNTEFSG 138
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+S + K+ +G+++P + + +R FE+ G VVECD++K+Y FV
Sbjct: 73 NSKTSTKLHVGSISPTCTKKELRTQFEECGLVVECDIMKDYAFV 116
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR----NYGFVHI-DSPDINKCIKELNGM 100
K+F+ NL +++ F YG V+ECDI++ NYGFVHI D + I+ L+
Sbjct: 3 KLFIRNLPRESQSS----FFKQYGKVLECDIIKDYGFNYGFVHIEDKTAAEEAIRNLHHC 58
Query: 101 MVDG 104
+ G
Sbjct: 59 KLHG 62
>gi|324515561|gb|ADY46243.1| Paraspeckle component 1 [Ascaris suum]
Length = 285
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 19 LNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 77
L+GQ +E L + K T ++FVGNL ++ + E++ELF P+G + EC +
Sbjct: 4 LSGQAFSENELMTDLP---KKKFTGRCRLFVGNLPNDLKEEELKELFSPHGDIAECYLSG 60
Query: 78 RNYGFVHIDSPDINKCIKE-LNGMMVDGKPMKVVVA 112
+ + F+ +D+ + KE ++G M+ +P++V A
Sbjct: 61 KGFAFLRMDTRAHAESAKEAIDGKMIHNRPVRVRFA 96
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 15/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A++ +N I+ +P++I S++ P+ + VF+ NL + + F
Sbjct: 64 DAERALEGMNFDIIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFTA 121
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + NK I+++NGM+++GK KV V FI
Sbjct: 122 FGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGK--KVYVGRFI 175
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E +I+++NG ++N K + + RK T V+V N ++
Sbjct: 145 HFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFS 204
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGM-MVDGKPMK 108
+RE+F YG + ++ R +GFV + PD + ELNG +V+GKP+
Sbjct: 205 DEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLY 264
Query: 109 V 109
V
Sbjct: 265 V 265
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 25/131 (19%)
Query: 7 ENDEEGRTAIKELNG-QIVNEKPL-----------------KIEAATSRKGPNTPTTKVF 48
E+ + A ELNG ++V KPL K E S + ++
Sbjct: 240 EDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLY 299
Query: 49 VGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMM 101
V NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +
Sbjct: 300 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRI 359
Query: 102 VDGKPMKVVVA 112
V KP+ V +A
Sbjct: 360 VGTKPLYVALA 370
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 23/168 (13%)
Query: 2 SSGH----MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-TKVFVGNLSDNT 56
S GH +ND+ + AI++L+G+++N+K + + + ++P T V+V NLS++
Sbjct: 152 SKGHGFVQFDNDQSAKNAIEKLDGRLMNDKKVYVGYFVRCQERSSPKFTNVYVKNLSESY 211
Query: 57 RAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMV-DGKPM 107
++++LF +G + I+++ +GFV+ S D +++LNG DGK +
Sbjct: 212 TNEDLKQLFNTFGVITSVKIMKDENGNSKRFGFVNFQSSDSAATAVEKLNGSTTNDGKVL 271
Query: 108 KVVVAGFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKS 155
V A S + L F ++ R F+ + Y K+
Sbjct: 272 FVGRAQKKSEREAELKAFF---------EQEKLKRYEKFQGANLYLKN 310
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 26/134 (19%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVF---------------- 48
+ ++ + TA+++LNG N+ + +K K F
Sbjct: 246 NFQSSDSAATAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGAN 305
Query: 49 --VGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELN 98
+ N+ + +++ELF +GT+ C ++ + GFV +P + +K I E+N
Sbjct: 306 LYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMN 365
Query: 99 GMMVDGKPMKVVVA 112
G ++ KP+ V VA
Sbjct: 366 GKIIGQKPVYVSVA 379
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 15/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + VF+ NL N + + F
Sbjct: 64 DAERALDTMNFDMIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSA 121
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + NK I +NGM+++GK KV V FI
Sbjct: 122 FGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK--KVYVGKFI 175
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E +I +NG ++N K + + RK T V+V N ++
Sbjct: 145 HFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMT 204
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMV-DGKPMK 108
+++++F YGT+ ++ R +GFV + PD + + ELNG V +GK M
Sbjct: 205 DDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMY 264
Query: 109 V 109
V
Sbjct: 265 V 265
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 12 GRTAIKELNGQIVNEK--PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 69
GR K Q + K LK+E +G N ++V NL D+ +R+ F P+G
Sbjct: 266 GRAQKKAERQQELKRKFEQLKLERLNRYQGVN-----LYVKNLDDSIDDERLRKEFAPFG 320
Query: 70 TVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
T+ ++ + +GFV +P + K + E+NG ++ KP+ V +A
Sbjct: 321 TITSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALA 370
>gi|393907787|gb|EJD74782.1| paraspeckle component 1 [Loa loa]
Length = 591
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-RNYGFVHIDSPDINKCIKE-LNGMMVD 103
++FVGNL ++ + E++ELF P+G + EC + + + F+ +D+ + KE ++G ++
Sbjct: 130 RLFVGNLPNDLKEQELKELFAPHGDIAECYLSGKGFAFLRLDTRAHAESAKEAIDGKIIH 189
Query: 104 GKPMKVVVA 112
G+P++V A
Sbjct: 190 GRPVRVRFA 198
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 17/121 (14%)
Query: 2 SSGH----MENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNL 52
S GH E++E + AI +LNG ++N+K P + + T V+V NL
Sbjct: 151 SKGHGFVQFESEESAQNAIDKLNGMLINDKQVYVGPFQRKQDRESALSGTKFNNVYVKNL 210
Query: 53 SDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELNGMMVDG 104
+ T +++ +F YG + ++R+ +GFV+ + D K ++ LNG DG
Sbjct: 211 FEATTEADLKSIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVEDAAKAVEALNGKNFDG 270
Query: 105 K 105
K
Sbjct: 271 K 271
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 25/130 (19%)
Query: 8 NDEEGRTAIKELNG-------------QIVNEKPLKI----EAATSRKGPNTPTTKVFVG 50
N E+ A++ LNG Q +E+ L++ E +T T +++
Sbjct: 252 NVEDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKERNEQSTKETVDKYHGTNLYIK 311
Query: 51 NLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMV 102
NL D+ E+RELF +GT+ C ++R+ GFV + + + E+NG MV
Sbjct: 312 NLDDSVGDEELRELFSEFGTITSCKVMRDPSGISRGSGFVAFSIAEGASWALGEMNGKMV 371
Query: 103 DGKPMKVVVA 112
GKP+ V +A
Sbjct: 372 AGKPLYVALA 381
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 32 EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV 83
+AA S P+ T ++VG+L + P++ +LF VV I R+ YG+V
Sbjct: 11 DAAASGANPSMTTISLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYV 70
Query: 84 HI-DSPDINKCIKELNGMMVDGKPMKVV 110
+ ++ D K I LN ++GK ++++
Sbjct: 71 NFSNARDAAKAIDVLNFTPLNGKTIRIM 98
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 15/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + VF+ NL N + + F
Sbjct: 64 DAERALDTMNFDMIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSA 121
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + NK I +NGM+++GK KV V FI
Sbjct: 122 FGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK--KVYVGKFI 175
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E +I +NG ++N K + + RK T V+V N ++
Sbjct: 145 HFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMT 204
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMV-DGKPMK 108
+++E+F YGT+ ++ R +GFV + PD + + ELNG V +GK M
Sbjct: 205 DDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMY 264
Query: 109 V 109
V
Sbjct: 265 V 265
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 12 GRTAIKELNGQIVNEK--PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 69
GR K Q + K LK+E +G N ++V NL D+ +R+ F P+G
Sbjct: 266 GRAQKKAERQQELKRKFEQLKLERLNRYQGVN-----LYVKNLDDSIDDERLRKEFAPFG 320
Query: 70 TVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
T+ ++ + +GFV +P + K + E+NG ++ KP+ V +A
Sbjct: 321 TITSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALA 370
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ ++ K + K+E T RK ++ +V
Sbjct: 239 EKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D+ +R+ F P+GT+ ++ R +GFV SP + K + E+NG++V
Sbjct: 299 KNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSRGFGFVCFSSPEEATKAVTEMNGIIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVSLA 368
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 19/122 (15%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI---------EAATSRKGPNTPTTKVFVGNLSDN 55
H E E AI+++NG ++N++ + + EA K P V++ N ++
Sbjct: 144 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFPN--VYIKNFGED 201
Query: 56 TRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPM 107
+++LF +G + ++ + +GFV + D K + E+NG + GK +
Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQI 261
Query: 108 KV 109
V
Sbjct: 262 YV 263
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 15/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + VF+ NL N + + F
Sbjct: 64 DAERALDTMNFDMIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSA 121
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + NK I +NGM+++GK KV V FI
Sbjct: 122 FGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK--KVYVGKFI 175
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E +I +NG ++N K + + RK T V+V N ++
Sbjct: 145 HFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMT 204
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMV-DGKPMK 108
+++E+F YGT+ ++ R +GFV + PD + + ELNG V +GK M
Sbjct: 205 DDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMY 264
Query: 109 V 109
V
Sbjct: 265 V 265
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 12 GRTAIKELNGQIVNEK--PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 69
GR K Q + K LK+E +G N ++V NL D+ +R+ F P+G
Sbjct: 266 GRAQKKAERQQELKRKFEQLKLERLNRYQGVN-----LYVKNLDDSIDDERLRKEFAPFG 320
Query: 70 TVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
T+ ++ + +GFV +P + K + E+NG ++ KP+ V +A
Sbjct: 321 TITSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALA 370
>gi|312377085|gb|EFR24002.1| hypothetical protein AND_11731 [Anopheles darlingi]
Length = 262
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDI-NKCIKELNGMMVD 103
TKVFVG+L T+ EVR LF YG V ECD++ FVH+ + D+ I+ L+
Sbjct: 4 TKVFVGSLPPATKPEEVRRLFENYGVVTECDVMNRCAFVHMQNQDMAESAIQALHNTTFK 63
Query: 104 G 104
G
Sbjct: 64 G 64
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+G K+F+G++ P T E +R LFE YG V ECDV+ FV
Sbjct: 1 MGRTKVFVGSLPPATKPEEVRRLFENYGVVTECDVMNRCAFV 42
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 7 ENDEEGRTAIKELNG-QIVNEKPL-----------------KIEAATSRKGPNTPTTKVF 48
E+ E TA++ LNG +I++ KPL + EA + ++
Sbjct: 240 ESPEAAETAVEALNGKEIIDGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLY 299
Query: 49 VGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMM 101
V NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +
Sbjct: 300 VKNLDDTIDDERLRKEFSPFGTITSAKVMMEDNRSKGFGFVCFSSPEEATKAVTEMNGRI 359
Query: 102 VDGKPMKVVVA 112
V KP+ V +A
Sbjct: 360 VGSKPLYVALA 370
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 15/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDLIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSA 121
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + NK I+++NGM+++GK KV V FI
Sbjct: 122 FGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGK--KVYVGRFI 175
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 16/121 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E +I+++NG ++N K + + RK T V+V N ++
Sbjct: 145 HFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDLT 204
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGM-MVDGKPMK 108
++R +F YG + I+ + +GFV +SP+ + ++ LNG ++DGKP+
Sbjct: 205 EEQLRTMFEKYGKITSYKIMSKDDGKSKGFGFVAFESPEAAETAVEALNGKEIIDGKPLY 264
Query: 109 V 109
V
Sbjct: 265 V 265
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDSMNFDVIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH + + NK I+++NGM+++GK KV V F+S
Sbjct: 122 FGDILSCKVVCDENGSKGYGFVHFATEEAANKSIEKVNGMLLNGK--KVYVGKFMS 175
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 12/91 (13%)
Query: 29 LKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGF 82
+K E A +G N ++V NL D+ +R+ F+P+GT+ ++ + +GF
Sbjct: 284 MKAERANRYQGVN-----LYVKNLDDSLDDERLRKEFMPFGTITSAKVMSEGGRSKGFGF 338
Query: 83 VHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
V SP + K + E+NG +V KP+ V +A
Sbjct: 339 VCFSSPEEATKAVTEMNGRIVSTKPLYVALA 369
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 16/121 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H +E +I+++NG ++N K + + SRK G T VFV N D
Sbjct: 144 HFATEEAANKSIEKVNGMLLNGKKVYVGKFMSRKERYDAMGGQQKKFTNVFVKNFGDELD 203
Query: 58 APEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCIKELNGMMVDGKPMK 108
+RE+F YG +V ++++ +GFV + P D +LN ++G+ +
Sbjct: 204 DEGLREMFERYGKIVSHKVMQDDHSGRNKGFGFVCFEDPIDAENACDDLNMKDINGRILY 263
Query: 109 V 109
V
Sbjct: 264 V 264
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|297851860|ref|XP_002893811.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
gi|297339653|gb|EFH70070.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
Length = 403
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 26/134 (19%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG------------------PNTPTTK 46
+ E E TAI ++NG IV+EK L + A +K T
Sbjct: 165 NFEKAEAAVTAIDKMNGTIVDEKELHVGRAQRKKNRIQDLKVIFKLEKIKRDMKTRKGTN 224
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELN 98
++V NL + +++ELF +GT++ C ++ + GFV S + +K + ++N
Sbjct: 225 LYVKNLDYSVDNTKLQELFSEFGTIISCKVMVHPNRISKGVGFVEFSTSEEASKAMLKMN 284
Query: 99 GMMVDGKPMKVVVA 112
G +V KP+ V +A
Sbjct: 285 GKVVGNKPIYVSLA 298
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 20 NGQIVNEKPLKIEAATSRKGPNTPT--TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV 77
NG ++ + + + SR+ + T V+V NL++ T +++ +F +G + ++
Sbjct: 92 NGTLIRNQHIHVSPFVSRRQWDESRVFTNVYVKNLAETTTDDDLKMIFEEFGEITSAVVM 151
Query: 78 RN-------YGFVHIDSPDIN-KCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIF 126
++ +GFV+ + + I ++NG +VD K + V A + + L VIF
Sbjct: 152 KDKEGKSRMFGFVNFEKAEAAVTAIDKMNGTIVDEKELHVGRAQRKKNRIQDLKVIF 208
>gi|195134987|ref|XP_002011917.1| GI14459 [Drosophila mojavensis]
gi|193909171|gb|EDW08038.1| GI14459 [Drosophila mojavensis]
Length = 636
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 8/104 (7%)
Query: 28 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE--CDIVRNYGFVHI 85
P+++ T G N +++VGNL+++ E+RE+F PYG + E ++ +N+ F+ +
Sbjct: 220 PIEVAQETKFSGRN----RLYVGNLTNDITDEELREMFKPYGEIGEIFSNLEKNFTFLKV 275
Query: 86 D-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFI 128
D + K + L+G M G+ ++V A ++IL N+ F+
Sbjct: 276 DYHVNAEKAKRALDGSMRKGRQLRVRFAP-NATILRVSNLTPFV 318
>gi|194900595|ref|XP_001979841.1| GG21764 [Drosophila erecta]
gi|190651544|gb|EDV48799.1| GG21764 [Drosophila erecta]
Length = 675
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVE--CDIVRNYGFVHID-SPDINKCIKELNGMM 101
+++VGNL+++ E+RE+F PYG + E + +N+ F+ +D P+ K + L+G M
Sbjct: 292 NRLYVGNLTNDITDDELREMFKPYGEIGEIFSNPDKNFTFLKVDYHPNAEKAKRALDGSM 351
Query: 102 VDGKPMKVVVAGFISSILSCLNVIFFI 128
G+ ++V A ++IL N+ F+
Sbjct: 352 RKGRQLRVRFAP-NATILRVSNLNQFV 377
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 15/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + VF+ NL N + + F
Sbjct: 64 DAERALDTMNFDMIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSA 121
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + NK I +NGM+++GK KV V FI
Sbjct: 122 FGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK--KVYVGKFI 175
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E +I +NG ++N K + + RK T V+V N ++
Sbjct: 145 HFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMT 204
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMV-DGKPMK 108
+++E+F YGT+ ++ R +GFV + PD + + ELNG V +GK M
Sbjct: 205 DDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMY 264
Query: 109 V 109
V
Sbjct: 265 V 265
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 12 GRTAIKELNGQIVNEK--PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 69
GR K Q + K LK+E +G N ++V NL D+ +R+ F P+G
Sbjct: 266 GRAQKKAERQQELKRKFEQLKLERLNRYQGVN-----LYVKNLDDSIDDERLRKEFAPFG 320
Query: 70 TVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
T+ ++ + +GFV +P + K + E+NG ++ KP+ V +A
Sbjct: 321 TITSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALA 370
>gi|42407939|dbj|BAD09078.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|125604308|gb|EAZ43633.1| hypothetical protein OsJ_28256 [Oryza sativa Japonica Group]
gi|215697914|dbj|BAG92121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 305
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 16/124 (12%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR-----KGPN--TPTTKVFVGNLSDNTRA 58
M EE AI+ LN +N + L + A R + P P + +VGNL
Sbjct: 175 MSTIEEADKAIEMLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDD 234
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+ +LF +G VV +V R +GFV + S +++ I L+G +DG+P++V
Sbjct: 235 SRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRV 294
Query: 110 VVAG 113
VA
Sbjct: 295 NVAA 298
>gi|125562527|gb|EAZ07975.1| hypothetical protein OsI_30233 [Oryza sativa Indica Group]
Length = 306
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 16/124 (12%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR-----KGPN--TPTTKVFVGNLSDNTRA 58
M EE AI+ LN +N + L + A R + P P + +VGNL
Sbjct: 176 MSTIEEADKAIEMLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDD 235
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+ +LF +G VV +V R +GFV + S +++ I L+G +DG+P++V
Sbjct: 236 SRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRV 295
Query: 110 VVAG 113
VA
Sbjct: 296 NVAA 299
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 15/112 (13%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ +N ++ +P++I S++ P+ + VF+ NL N + + F +G +
Sbjct: 111 ALDTMNFDMIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNI 168
Query: 72 VECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+ C + ++ YGFVH ++ + NK I ++NGM+++GK KV V FI
Sbjct: 169 LSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGK--KVYVGKFI 218
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 12 GRTAIKELNGQIVNEK--PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 69
GR K Q + K LKIE +G N ++V NL D +R+ F P+G
Sbjct: 309 GRAQKKAERQQELKRKFEQLKIERLNRYQGVN-----LYVKNLDDTIDDERLRKEFTPFG 363
Query: 70 TVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
T+ ++ + +GFV P + K + E+NG +V KP+ V +A
Sbjct: 364 TITSAKVMMEEGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALA 413
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E +I ++NG ++N K + + RK T V+V N ++
Sbjct: 188 HFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMT 247
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGM-MVDGKPMK 108
+++++F YGT+ ++ R +GFV + PD + + ELNG + +GK M
Sbjct: 248 EDKLKDMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEIAEGKCMY 307
Query: 109 V 109
V
Sbjct: 308 V 308
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ KP +I S++ P T VF+ NL + +
Sbjct: 104 NTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 161
Query: 65 FVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 219
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 17/106 (16%)
Query: 10 EEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNL 52
E + A++E+N + + + L + EAA K ++V NL
Sbjct: 286 ESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNL 345
Query: 53 SDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELN 98
+D+ ++RELF PYGT+ ++R+ SPD KE +
Sbjct: 346 TDDIDDEKLRELFGPYGTITSAKVMRDTNVERDQSPDSAGKEKEAD 391
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + S+K + T V++ NL
Sbjct: 188 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEID 247
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELN 98
E R++F +G + + R+ +GFV+ + + ++E+N
Sbjct: 248 DDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMN 296
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 25/125 (20%)
Query: 2 SSGH----MENDEEGRTAIKELNGQIVNEKPLKI---------EAATSRKGPNTPTTKVF 48
S GH E++E + AI +LNG ++N+K + + E+A S T VF
Sbjct: 151 SKGHGFVQFESEESAQNAIDKLNGMLINDKQVFVGPFLRKQDRESALS----GTKFNNVF 206
Query: 49 VGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELNGM 100
V NL D+ ++ +F YG + ++R+ +GFV+ + D K ++ LNG
Sbjct: 207 VKNLLDSMTEADLERIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVDDAAKAVEALNGK 266
Query: 101 MVDGK 105
DGK
Sbjct: 267 NFDGK 271
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 25/130 (19%)
Query: 8 NDEEGRTAIKELNGQ-------IVNEKPLKIEAATSRKGPNTPTTK----------VFVG 50
N ++ A++ LNG+ V + K E KG + TK +++
Sbjct: 252 NVDDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKGQHEQITKETVDKYHGTNLYIK 311
Query: 51 NLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMV 102
NL D+ E+ ELF +GT+ C ++R+ GFV + + + E+NG MV
Sbjct: 312 NLDDSVGDEELMELFSEFGTITSCKVMRDPNGISRGSGFVSFSIAEGATRALGEMNGKMV 371
Query: 103 DGKPMKVVVA 112
GKP+ V +A
Sbjct: 372 AGKPLYVALA 381
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 31 IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGF 82
I+AA S P+ T ++VG+L + P++ +LF VV I R+ YG+
Sbjct: 10 IDAAASGANPSLTTISLYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGY 69
Query: 83 VHI-DSPDINKCIKELNGMMVDGKPMKVV 110
V+ ++ D K I LN ++GK ++++
Sbjct: 70 VNFSNAHDAAKAIDVLNFTPLNGKIIRIM 98
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 10/111 (9%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR--KGPNTPTTKVFVGNLSDNTRAPEVR 62
E +E + AI ++NG +V EK + + R + N VFV NL ++T E++
Sbjct: 138 QFEQEESAQVAIDKVNGMLVAEKQVFVGPFVRRQEREQNGKFNNVFVKNLGESTTDDELK 197
Query: 63 ELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGK 105
E+F +G + ++R+ +GFV+ ++PD K + LNG ++ K
Sbjct: 198 EVFGAFGKITSAVVMRDSDGKSKCFGFVNFENPDEAAKAVVGLNGKKIEDK 248
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKP-----------------LKIEAATSRKGPNTPTTKV 47
+ EN +E A+ LNG+ + +K K E + +
Sbjct: 226 NFENPDEAAKAVVGLNGKKIEDKEWYVGRAQKKSEREAELRAKYEQERKERIDRYQGANL 285
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY-------GFVHIDSP-DINKCIKELNG 99
++ NL D+ +RE+F +G++ C ++R+ GFV +P + N+ E+NG
Sbjct: 286 YLKNLDDDVDDERLREIFADFGSITSCKVMRDAQGQSKGSGFVAYSAPEEANRATIEMNG 345
Query: 100 MMVDGKPMKVVVA 112
M+ KP+ V +A
Sbjct: 346 KMIGSKPIYVAMA 358
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 15/119 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVREL 64
N ++ A++ LN VN K ++I S + P+ + T +F+ NL + +
Sbjct: 54 NVQDATRALELLNFTPVNGKAVRI--MFSHRDPSIRKSGTANIFIKNLDRAIDNKALHDT 111
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFI 115
FV +G ++ C + + YGFV + + + I ++NGM+V K +V V F+
Sbjct: 112 FVSFGNILSCKVATDSNGQSKGYGFVQFEQEESAQVAIDKVNGMLVAEK--QVFVGPFV 168
>gi|62087532|dbj|BAD92213.1| arginine/serine-rich splicing factor 6 variant [Homo sapiens]
Length = 279
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELN 98
P T +V++G LS N R +++ F YG ++E D+ YGFV DS D + + ELN
Sbjct: 31 PATDMPRVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELN 90
Query: 99 GMMVDGKPMKVVV 111
G + G+ +V+V
Sbjct: 91 GKELCGE--RVIV 101
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 67
+G A++ELN ++ KP +I S++ P T VF+ NL + + F
Sbjct: 108 DGERALEELNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAA 165
Query: 68 YGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + + YGFVH ++ D N+ IK +NGM+++ K KV V I
Sbjct: 166 FGNILSCKVAVDEHGNSKGYGFVHYETSDAANQAIKSVNGMLLNEK--KVFVGHHI 219
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSDNTR 57
H E + AIK +NG ++NEK + K + + + T ++V N+ T
Sbjct: 189 HYETSDAANQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDAETT 248
Query: 58 APEVRELFVPYGTVVECDI-------VRNYGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
E RELF YG + + VR +GFV+ I D K + ELN + G+ + V
Sbjct: 249 DDEFRELFEKYGQITSASLAHDDQGKVRGFGFVNFIRHEDAAKAVDELNDLDFKGQKLYV 308
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFV 49
E EE A++E+NG+ +N K L + E + +++
Sbjct: 239 EKHEEANKAVEEMNGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E + AI+++NG ++N++ + + SRK T V++ N D+
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF YG + ++ + +GFV + + NK ++E+NG ++GK
Sbjct: 204 DERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGK 259
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ D ++ I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|413944556|gb|AFW77205.1| hypothetical protein ZEAMMB73_752942 [Zea mays]
Length = 282
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 37 RKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIK 95
R G + TK++VG +S TR ++ ++F YG + D+ R +GFV P D +
Sbjct: 82 RHGRHGSNTKLYVGQISPYTRTQDLEDIFRKYGRLRNVDMKREFGFVEFTDPRDADDARH 141
Query: 96 ELNGMMVDGKPMKVVVA 112
+L+G + DG + V A
Sbjct: 142 DLDGRIFDGSHLIVEFA 158
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 15/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + VF+ NL N + + F
Sbjct: 64 DAERALDTMNFDMIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSA 121
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + NK I +NGM+++GK KV V FI
Sbjct: 122 FGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK--KVYVGKFI 175
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E +I +NG ++N K + + RK T V+V N ++
Sbjct: 145 HFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMT 204
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMV-DGKPMK 108
+++++F YGT+ ++ R +GFV + PD + + ELNG V +GK M
Sbjct: 205 DDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMY 264
Query: 109 V 109
V
Sbjct: 265 V 265
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 12 GRTAIKELNGQIVNEK--PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 69
GR K Q + K LK+E +G N ++V NL D+ +R+ F P+G
Sbjct: 266 GRAQKKAERQQELKRKFEQLKLERLNRYQGVN-----LYVKNLDDSIDDERLRKEFAPFG 320
Query: 70 TVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
T+ ++ + +GFV +P + K + E+NG ++ KP+ V +A
Sbjct: 321 TITSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALA 370
>gi|116284263|gb|AAI24193.1| Zgc:55809 protein [Danio rerio]
Length = 284
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVD 103
++V+VG LS R +V F YG ++E D+ YGFV D P D + + +LNG +
Sbjct: 2 SRVYVGKLSHRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKDLC 61
Query: 104 GK 105
GK
Sbjct: 62 GK 63
>gi|187097098|ref|NP_001119609.1| sex-lethal [Acyrthosiphon pisum]
gi|98986311|tpe|CAJ55783.1| TPA: sex-lethal [Acyrthosiphon pisum]
gi|239792967|dbj|BAH72757.1| ACYPI000005 [Acyrthosiphon pisum]
Length = 205
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 69
E+ AI+ +NG V K LK+ A G + T ++V NL + E+ +LF PYG
Sbjct: 61 EDASKAIEVMNGLQVENKRLKVSYARP-AGEDIKDTNLYVQNLPRSITERELEDLFAPYG 119
Query: 70 TVVECDIV--------RNYGFVHID-SPDINKCIKELNGMMVDG 104
+V+ +I+ R FV + D K I +LNG++++G
Sbjct: 120 QIVQKNILKDKYSGLPRGVAFVRYNKKEDAQKAIIQLNGVLLEG 163
>gi|401842356|gb|EJT44580.1| NSR1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 393
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG--------------PNTPTTKVFVGN 51
EN AI+E+ G+ ++ +P+ + +TS+ P+ P+ +F+GN
Sbjct: 189 FENKSYAEKAIQEMQGKEIDGRPINCDLSTSKPAGNNTNDRAKKFGDTPSEPSDTLFLGN 248
Query: 52 LSDNTRAPEVRELFVPYGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMV 102
LS N + ELF +G VV E + + +G+V S D K ++ L G +
Sbjct: 249 LSFNADRDTIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSSLEDSKKALESLQGEYI 308
Query: 103 DGKPMKV 109
D +P+++
Sbjct: 309 DNRPVRL 315
>gi|356572373|ref|XP_003554343.1| PREDICTED: uncharacterized protein LOC100789862 [Glycine max]
Length = 287
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 22/123 (17%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG+LS TR+ ++ F YG V D+ ++ FV P D + L+G V
Sbjct: 10 NTRLYVGHLSSRTRSRDLERAFSRYGRVRGVDMKNDFAFVDFSDPRDADDARYNLDGRDV 69
Query: 103 DGKPMKVVVA-------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSS 149
DG + V A G C N CG GHW+++C +AG++++
Sbjct: 70 DGSRIIVEFAKGAPRGSREYLGRGPPPGSGRCFN------CGLDGHWARDC-KAGDWKNK 122
Query: 150 GCY 152
CY
Sbjct: 123 -CY 124
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 24/127 (18%)
Query: 10 EEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVGNL 52
E+ + A+ E+NG+ +N +K L+ + RK ++ +V NL
Sbjct: 242 EDAQKAVDEMNGKEMNGKIIYVGRAQKRLERQGELKRKFDQLKQDRIQRYQGVNLYVKNL 301
Query: 53 SDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGK 105
D+ +R+ F PYGT+ ++ + +GFV SP + K + E+NG +V K
Sbjct: 302 DDSIDDERLRKEFSPYGTITSAKVMTEAGQSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 106 PMKVVVA 112
P+ V +A
Sbjct: 362 PLYVALA 368
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNT-------PTTKVFVGNLSDNTR 57
H E E AI+ +NG ++N++ + + SRK T +++ N DN
Sbjct: 144 HFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGTKVMKFTNIYIKNFGDNLT 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELNGMMVDGK 105
+++E F +G + ++R+ +GFV + D K + E+NG ++GK
Sbjct: 204 DEKLKEAFSAFGKTLSVRVMRDEKGRSRGFGFVNYAHHEDAQKAVDEMNGKEMNGK 259
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ +N ++ +P++I S++ P + +F+ N+ D+ + + F +G +
Sbjct: 68 ALDTMNYDVIKGRPIRI--MWSQRDPALRKSGVGNIFIKNIDDSIDNKALYDTFSAFGNI 125
Query: 72 VECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+ C +V + YGFVH ++ + N+ I+ +NGM+++ + KV V F S
Sbjct: 126 LSCKVVCDERGSKGYGFVHFETQEAANRAIETMNGMLLNDR--KVFVGHFKS 175
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGINDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGAALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|365760560|gb|EHN02272.1| Nsr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 371
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG--------------PNTPTTKVFVGN 51
EN AI+E+ G+ ++ +P+ + +TS+ P+ P+ +F+GN
Sbjct: 189 FENKSYAEKAIQEMQGKEIDGRPINCDLSTSKPAGNNTNDRAKKFGDTPSEPSDTLFLGN 248
Query: 52 LSDNTRAPEVRELFVPYGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMV 102
LS N + ELF +G VV E + + +G+V S D K ++ L G +
Sbjct: 249 LSFNADRDTIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSSLEDSKKALESLQGEYI 308
Query: 103 DGKPMKV 109
D +P+++
Sbjct: 309 DNRPVRL 315
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ KP +I S++ P T VF+ NL + +
Sbjct: 99 NTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 156
Query: 65 FVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 157 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 214
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 30 KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD 89
+ EAA K ++V NL+D+ ++RELF PYGT+ ++R+ +P+
Sbjct: 318 QYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDTNIERTQTPE 377
Query: 90 INK 92
+K
Sbjct: 378 SDK 380
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + S+K + T V++ N+ +
Sbjct: 183 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVT 242
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELN 98
E RELF +G + + R+ +GFV+ + + + E+N
Sbjct: 243 EEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMN 291
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ KP +I S++ P T VF+ NL + +
Sbjct: 102 NTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 159
Query: 65 FVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 217
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 17/106 (16%)
Query: 10 EEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNL 52
E + A++E+N + + + L + EAA K ++V NL
Sbjct: 284 ESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNL 343
Query: 53 SDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELN 98
+D+ ++RELF PYGT+ ++R+ SP+ KE N
Sbjct: 344 TDDIDDEKLRELFGPYGTITSAKVMRDTNVERESSPESAGKEKEAN 389
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + S+K + T V++ NL
Sbjct: 186 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEID 245
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELN 98
E R++F +G + + R+ +GFV+ + + ++E+N
Sbjct: 246 DDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMN 294
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 26/134 (19%)
Query: 5 HMENDEEGRTAIKELNGQIV----------------NEKPLKIEAATSRKG--PNTPTTK 46
+ +N + A+++L+G ++ E L+ + RK
Sbjct: 259 NFQNTDSAAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAELRAKFEQERKSRFEKLQGAN 318
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELN 98
+++ NL D+ +++ELF YGT+ C ++ + GFV SPD K + E+N
Sbjct: 319 LYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMN 378
Query: 99 GMMVDGKPMKVVVA 112
G M KP+ V VA
Sbjct: 379 GKMKGRKPLYVAVA 392
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 15/117 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 66
++ A++ LN VN KP++I S + P+ + VF+ NL + +R+ F
Sbjct: 87 QDAVNAMEHLNFTPVNGKPIRI--MISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTFA 144
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFI 115
+GTV+ C + + YGFV +S + + I++LNGM+++ K +V V FI
Sbjct: 145 AFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDK--QVYVGHFI 199
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 13/118 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLK----IEAATSRKGPNTPTTKVFVGNLSDNTRAPE 60
E++E +I++LNG ++N+K + I + + T V+V NL + T +
Sbjct: 169 QFESEESAEISIEKLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDDD 228
Query: 61 VRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMV-DGKPMKV 109
++ LF P+GT+ ++ + +GFV+ + D +++L+G ++ D K + V
Sbjct: 229 LKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLYV 286
>gi|72057573|ref|XP_792521.1| PREDICTED: RNA-binding protein lark-like isoform 2
[Strongylocentrotus purpuratus]
Length = 247
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+FVGNL +++ LF G VVECD+++NYGFVH+ + + + + +L G + G
Sbjct: 4 KLFVGNLPQGCTNDDLKTLFATIGQVVECDVLKNYGFVHMSTIEEALEAVSKLGGHRLYG 63
Query: 105 KPMKV 109
++V
Sbjct: 64 NAIRV 68
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+GN+ G + + ++ LF G+VVECDV+KNYGFV
Sbjct: 4 KLFVGNLPQGCTNDDLKTLFATIGQVVECDVLKNYGFV 41
>gi|366987527|ref|XP_003673530.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
gi|342299393|emb|CCC67147.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
Length = 415
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 22/126 (17%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-------------PNTPTTKVFVGNL 52
E+ AIKE+ G+ ++ + + ++ +TS+ P+ P+ +F+GNL
Sbjct: 210 FEDKSYAEKAIKEMQGKEIDGREINVDMSTSKPAAGNNDRAKKFGDVPSEPSETLFLGNL 269
Query: 53 SDNTRAPEVRELFVPYGTVV--------ECDIVRNYGFV-HIDSPDINKCIKELNGMMVD 103
S N + ELF YG ++ E + + +G+V + + D K ++ L G +D
Sbjct: 270 SFNADRDAISELFSKYGEIISVRIPTHPETEQPKGFGYVQYTNVEDAKKALEGLQGEYID 329
Query: 104 GKPMKV 109
+P+++
Sbjct: 330 NRPVRL 335
>gi|312068181|ref|XP_003137093.1| splicing factor [Loa loa]
Length = 308
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 14 TAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE 73
+++ L+GQ +E L + K T ++FVGNL ++ + E++ELF P+G + E
Sbjct: 101 SSMNVLSGQAFSETDLMSDLP---KKKFTGRCRLFVGNLPNDLKEQELKELFAPHGDIAE 157
Query: 74 CDIV-RNYGFVHIDSPDINKCIKE-LNGMMVDGKPMKVVVA 112
C + + + F+ +D+ + KE ++G ++ G+P++V A
Sbjct: 158 CYLSGKGFAFLRLDTRAHAESAKEAIDGKIIHGRPVRVRFA 198
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 24/132 (18%)
Query: 5 HMENDEEGRTAIKELNGQIV-----------------NEKPLKIEAATSRKGPNTPTTKV 47
+ E EE + A+ ++NG+ V NE + E + +
Sbjct: 237 NFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNL 296
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGM 100
+V NL D+ ++R+ F PYG + ++ + +GFV SP + K + E+NG
Sbjct: 297 YVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 101 MVDGKPMKVVVA 112
+V KP+ V +A
Sbjct: 357 IVGTKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +++ +P++I S++ P + +F+ NL D+ + + F
Sbjct: 64 DAERALDTMNFEVIKGQPVRI--MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFST 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V R +GFVH ++ + ++ I +NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDDHGSRGFGFVHFETHEAAHQAIATMNGMLLNDR--KVFVGHFKS 175
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI +NG ++N++ + + SR+ T ++V NL +
Sbjct: 144 HFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G ++ ++R+ +GFV+ + + K + ++NG V G+ + V
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYV 263
>gi|301125993|ref|XP_002909814.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
gi|262103703|gb|EEY61755.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
Length = 587
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 29 LKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YG 81
LK+E +G N ++V NL D E+RE F GT+ ++R+ +G
Sbjct: 267 LKMERINKYQGVN-----LYVKNLDDQLSDDELREAFAECGTITSSRVMRDPNGNSRGFG 321
Query: 82 FVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
FV +P+ NK + E+NG ++ GKP+ V +A
Sbjct: 322 FVCFSTPEEANKAVAEMNGKLISGKPVYVALA 353
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ +P +I S++ P T +F+ NL + + +
Sbjct: 99 NAADGERALEQLNYSLIKNRPCRI--MWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDT 156
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +GTV+ C + + YGFVH ++ + IK +NGM+++ K KV V IS
Sbjct: 157 FAAFGTVLSCKVATDETGRSKGYGFVHYETAEAAENAIKAVNGMLLNDK--KVYVGHHIS 214
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 13/91 (14%)
Query: 30 KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGF 82
K+E + +G N +++ NL D+ ++R F P+GT+ C ++R+ +GF
Sbjct: 323 KLEKLSKYQGVN-----LYIKNLEDDVDDDKLRAEFEPFGTITSCKVMRDEKGQSKGFGF 377
Query: 83 VHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
V SPD K + E+N M+ KP+ V +A
Sbjct: 378 VCFSSPDEATKAVAEMNNKMIGTKPLYVSLA 408
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 15/123 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + SRK + T ++V NL
Sbjct: 183 HYETAEAAENAIKAVNGMLLNDKKVYVGHHISRKERQSKLEEMRAQFTNLYVKNLDPEVT 242
Query: 58 APEVRELFVPYGTVVECDI-------VRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E ELF YG V I + +GFV+ ++ D K + ELN + GK + V
Sbjct: 243 QDEFIELFKKYGNVTSAVISVDEEGKSKGFGFVNFETHDEAQKAVDELNDFELKGKKLFV 302
Query: 110 VVA 112
A
Sbjct: 303 SRA 305
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFV 49
E E+ + A+ E+NG+ +N K + K E T K ++V
Sbjct: 214 ERHEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYV 273
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +++ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 274 KNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMNGRIV 333
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 334 ATKPLYVALA 343
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 64/125 (51%), Gaps = 14/125 (11%)
Query: 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRA 58
+S + E + A+ +N ++ KP++I S++ P+ + VF+ NL+
Sbjct: 30 ASVNFEQPADAERALDTMNFDVIKGKPVRI--MWSQRDPSLRRSGVGNVFIKNLNKTIDN 87
Query: 59 PEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVV 111
+ + F +G ++ C +V + +GFVH ++ + + I+++NGM+++ + KV V
Sbjct: 88 KALYDTFSAFGNILSCKVVSDENGSKGHGFVHFETEEAAERAIEKMNGMLLNDR--KVFV 145
Query: 112 AGFIS 116
F S
Sbjct: 146 GRFKS 150
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTR 57
H E +E AI+++NG ++N++ + + S+K G T T V++ N D
Sbjct: 119 HFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMD 178
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
+ LF +G ++ ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 179 DETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 238
>gi|357121842|ref|XP_003562626.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 275
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 27/134 (20%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPT--------------TKV 47
M EE A+++ NG +PL++ + P TP K+
Sbjct: 132 MSTAEEVSAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRGMGGGGGGGSFDSGNKL 191
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCIKELN 98
+VGNLS + LF G V++ ++ R +GFV S D +N I L+
Sbjct: 192 YVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLD 251
Query: 99 GMMVDGKPMKVVVA 112
G+ +DG+ ++V VA
Sbjct: 252 GVDLDGRQIRVTVA 265
>gi|75022134|sp|Q9GRX4.1|NONA_DROLR RecName: Full=Protein no-on-transient A
gi|11065697|emb|CAC14308.1| NONA protein [Drosophila littoralis]
Length = 698
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 8/104 (7%)
Query: 28 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE--CDIVRNYGFVHI 85
P+++ T G N +++VGNL+++ E+RE+F PYG + E ++ +N+ F+ +
Sbjct: 268 PIEVAQETKFSGRN----RLYVGNLTNDITDEELREMFKPYGEIGEIFSNLEKNFTFLKV 323
Query: 86 D-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFI 128
D + K + L+G M G+ ++V A ++IL N+ F+
Sbjct: 324 DYHINAEKAKRALDGSMRKGRQLRVRFAP-NATILRVSNLTPFV 366
>gi|402590487|gb|EJW84417.1| hypothetical protein WUBG_04674 [Wuchereria bancrofti]
Length = 304
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 19 LNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 77
L+GQ +E L + K T ++FVGNL ++ + E++ELF P+G + EC +
Sbjct: 10 LSGQAFSETDLMSDLP---KKKFTGRCRLFVGNLPNDLKEQELKELFAPHGDIAECYLSG 66
Query: 78 RNYGFVHIDSPDINKCIKE-LNGMMVDGKPMKVVVA 112
+ + F+ +D+ + KE ++G ++ G+P++V A
Sbjct: 67 KGFAFLRLDTRAHAESAKEAIDGKIIHGRPVRVRFA 102
>gi|170055835|ref|XP_001863758.1| nucleolysin tia-1 [Culex quinquefasciatus]
gi|167875726|gb|EDS39109.1| nucleolysin tia-1 [Culex quinquefasciatus]
Length = 456
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 13/113 (11%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATS-RKGPNTPTTK---VFVGNLSDNTRAPEVRELF 65
+ +TA+ +N ++ +K +K+ ATS P T T++ +FVG+LS +RE F
Sbjct: 57 QSAQTALAAMNKRLFLKKEIKVNWATSPGNQPKTDTSQHHHIFVGDLSPEIETETLREAF 116
Query: 66 VPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
P+G + C IVR+ Y FV + + I+ +NG + + ++
Sbjct: 117 APFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIQMMNGQWLGSRSIRT 169
>gi|340506876|gb|EGR32928.1| splicing arginine serine-rich 4, putative [Ichthyophthirius
multifiliis]
Length = 243
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDI----VRNYGFVHI-DSPDINKCIKELNGM 100
K+F+GNLS + ++ +F YGTV E I +YGF+ D D + + N M
Sbjct: 24 KLFIGNLSKDADKRDLENIFKKYGTVKEIKIKATGSNHYGFIEFQDHRDAKDALDDCNNM 83
Query: 101 MVDGKPMKVVVA-GFISSILSCLNVIFFIRCGRGGHWSKECPRA 143
GK +++ G +C N CG H +K+C R+
Sbjct: 84 EFKGKQIRLEFGHGGKRRRENCFN------CGYSNHATKDCTRS 121
>gi|351697058|gb|EHA99976.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 187
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHID 86
K+F+GNL E+R LF YG +E D+++NYGFVH++
Sbjct: 3 KLFIGNLPREATGQEIRSLFEQYGKALEYDVIKNYGFVHME 43
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGK +E DV+KNYGFV
Sbjct: 3 KLFIGNLPREATGQEIRSLFEQYGKALEYDVIKNYGFV 40
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 24/132 (18%)
Query: 5 HMENDEEGRTAIKELNGQIV-----------------NEKPLKIEAATSRKGPNTPTTKV 47
+ E EE + A+ ++NG+ V NE + E + +
Sbjct: 237 NFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNL 296
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGM 100
+V NL D+ ++R+ F PYG + ++ + +GFV SP + K + E+NG
Sbjct: 297 YVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 101 MVDGKPMKVVVA 112
+V KP+ V +A
Sbjct: 357 IVGTKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +++ +P++I S++ P + +F+ NL D+ + + F
Sbjct: 64 DAERALDTMNFEVIKGQPVRI--MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFST 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V R +GFVH ++ + ++ I +NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDDHGSRGFGFVHFETHEAAHQAIATMNGMLLNDR--KVFVGHFKS 175
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI +NG ++N++ + + SR+ T ++V NL +
Sbjct: 144 HFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G ++ ++R+ +GFV+ + + K + ++NG V G+ + V
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYV 263
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ KP +I S++ P T VF+ NL + +
Sbjct: 98 NTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 155
Query: 65 FVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 156 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 213
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + S+K + T V++ NL
Sbjct: 182 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEIS 241
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E R++F +G + + R+ +GFV+ + D + E+N V G+ + V
Sbjct: 242 EEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYV 301
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 30 KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP 88
+ EAA K ++V NL+D+ ++RE+F PYGT+ ++R+ +P
Sbjct: 317 QYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKVMRDTNIERTQTP 375
>gi|449281934|gb|EMC88877.1| Embryonic polyadenylate-binding protein [Columba livia]
Length = 646
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 19/115 (16%)
Query: 17 KELNGQIV----NEKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVREL 64
KE+NG+IV +K L+ ++ RK +V +V NL D +R+
Sbjct: 270 KEINGRIVYVGRAQKRLERQSELKRKFEQIKQERVSRYQGVNLYVKNLDDGIDDDRLRKE 329
Query: 65 FVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
F PYGT+ ++ + +GFV SP + K + E+NG +V KP+ V +A
Sbjct: 330 FSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 384
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +++ +P++I S++ P + VF+ NL D+ + + F
Sbjct: 64 DAERALDTMNFEVIKGRPIRI--MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V R YGFVH ++ + + I+ +NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSRGYGFVHFETHEAATRAIETMNGMLLNDR--KVFVGHFKS 175
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 236 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 295
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 296 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 355
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 356 ATKPLYVALA 365
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVV----ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF P +V E + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 260
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|324503354|gb|ADY41460.1| Paraspeckle component 1 [Ascaris suum]
Length = 579
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 74
A+ L+GQ +E L + K T ++FVGNL ++ + E++ELF P+G + EC
Sbjct: 79 AMSMLSGQAFSENELMTDLP---KKKFTGRCRLFVGNLPNDLKEEELKELFSPHGDIAEC 135
Query: 75 DIV-RNYGFVHIDSPDINKCIKE-LNGMMVDGKPMKVVVA 112
+ + + F+ +D+ + KE ++G M+ +P++V A
Sbjct: 136 YLSGKGFAFLRMDTRAHAESAKEAIDGKMIHNRPVRVRFA 175
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E DE + AIK +NG ++NEK + + +K + T ++V N++
Sbjct: 193 HYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNVNPEAS 252
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E RELF YG + + R+ +GFV+ + + K + ELNG G+ + V
Sbjct: 253 DDEFRELFERYGEITSSSLARDQDGKSRGFGFVNYTTHESAYKAVDELNGKDFKGQDLYV 312
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 13/110 (11%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 67
+G A++ELN I+ +P +I S++ P T VF+ NL + + F
Sbjct: 112 DGEKALEELNYTIIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAA 169
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+G ++ C + ++ YGFVH ++ + + IK +NGM+++ K + V
Sbjct: 170 FGNILSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYV 219
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ KP +I S++ P T VF+ NL + +
Sbjct: 102 NTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 65 FVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 217
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + S+K + T V++ N+
Sbjct: 186 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVT 245
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E R++F +G + + R+ +GFV+ + D + E+N + G+ + V
Sbjct: 246 DEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYV 305
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 214 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 273
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 274 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 333
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 334 ATKPLYVALA 343
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 119 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 178
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 179 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 238
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 39 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 96
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 97 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 150
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 406 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 465
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 466 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 525
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 526 ATKPLYVALA 535
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 311 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 370
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 371 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 430
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ +N ++ KP++I S++ P+ + +F+ NL + + + F +G +
Sbjct: 235 ALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 292
Query: 72 VECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 293 LSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 342
>gi|195116106|ref|XP_002002597.1| GI11879 [Drosophila mojavensis]
gi|193913172|gb|EDW12039.1| GI11879 [Drosophila mojavensis]
Length = 724
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKC 93
P T + V L E+R LFV +G V C ++R+ YGFV ++ D K
Sbjct: 122 PKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKA 181
Query: 94 IKELNGMMVDGKPMKVVVA 112
I LNG+ + K +KV +A
Sbjct: 182 INALNGLRLQNKTIKVSIA 200
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 23/109 (21%)
Query: 9 DEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
E+ AI LNG + K +K+ A S KG N ++V L N ++ L
Sbjct: 175 QEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGAN-----LYVSGLPKNMTQSDLESL 229
Query: 65 FVPYGTVVE----CD---------IVRNYGFVHIDSP-DINKCIKELNG 99
F PYG ++ CD + + GF+ D + ++ IKELNG
Sbjct: 230 FSPYGKIITSRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNG 278
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ KP +I S++ P T VF+ NL + +
Sbjct: 101 NTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 158
Query: 65 FVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 159 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 216
>gi|301120388|ref|XP_002907921.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
gi|262102952|gb|EEY61004.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
Length = 640
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 29 LKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YG 81
LK+E +G N ++V NL D E+RE F GT+ ++R+ +G
Sbjct: 321 LKMERINKYQGVN-----LYVKNLDDQLSDDELREAFAECGTITSSRVMRDPNGNSRGFG 375
Query: 82 FVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
FV +P+ NK + E+NG ++ GKP+ V +A
Sbjct: 376 FVCFSTPEEANKAVAEMNGKLISGKPVYVALA 407
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIV-----------------NEKPLKIEAATSRKGPNTPTTKVFV 49
E EE + A+ +NG+ V NE + E + ++V
Sbjct: 239 EKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRGERQNELKRRFEQMKQDRQTRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D+ ++R +F PYG + ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDSISDEKLRTVFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGCIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GTKPLYVALA 368
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +++ +P++I S++ P + VF+ NL D+ + + + F
Sbjct: 64 DAERALDTMNFEVIKGQPIRI--MWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFST 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C + R +GFVH ++ + + I +NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVACDEHGSRGFGFVHFETNEAAQQAISTMNGMLLNDR--KVFVGHFKS 175
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-------EAATSRKGPNTPTTKVFVGNLSDNTR 57
H E +E + AI +NG ++N++ + + E T ++V NL +
Sbjct: 144 HFETNEAAQQAISTMNGMLLNDRKVFVGHFKSHREREAELGAQALAFTNIYVKNLHVDMD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G ++ ++R+ +GFV+ + + K + +NG V G+ + V
Sbjct: 204 EQGLQDLFFEFGKMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYV 263
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 22/161 (13%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAPEVR 62
N+E + AI++LNG ++N+K + + R+ T T V+V NL+++T +++
Sbjct: 157 NEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLK 216
Query: 63 ELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVAGF 114
F YG + ++++ +GFV+ ++ D + ++ LNG D K V A
Sbjct: 217 NAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQK 276
Query: 115 ISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKS 155
S + L V R KE A F+SS Y K+
Sbjct: 277 KSERETELRV-------RYEQNLKEA--ADKFQSSNLYVKN 308
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-----------------TTKV 47
+ EN ++ A++ LNG ++K + A + T ++ +
Sbjct: 245 NFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNL 304
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
+V NL + +++E+F P+GTV ++R+ GFV +P + + + +L+G
Sbjct: 305 YVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSG 364
Query: 100 MMVDGKPMKVVVA 112
M++ KP+ V +A
Sbjct: 365 KMIESKPLYVAIA 377
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVREL 64
N ++ AI+ELN + KP+++ S + P+ + +F+ NL ++ + +
Sbjct: 70 NPQDAARAIQELNYIPLYGKPIRV--MYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDT 127
Query: 65 FVPYGTVVECDIV-------RNYGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
F +G +V C + + YGFV + + K I++LNGM+++ K + V
Sbjct: 128 FSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 180
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCIK 95
T ++VG+L N ++ + F GTVV + R+ YG+V+ +P D + I+
Sbjct: 20 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 79
Query: 96 ELNGMMVDGKPMKVV 110
ELN + + GKP++V+
Sbjct: 80 ELNYIPLYGKPIRVM 94
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 259 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 318
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 319 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 378
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 379 ATKPLYVALA 388
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 164 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 223
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 224 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 283
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 60/114 (52%), Gaps = 14/114 (12%)
Query: 13 RTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYG 69
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F +G
Sbjct: 86 KRALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 143
Query: 70 TVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 144 NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 195
>gi|195393576|ref|XP_002055430.1| nonA [Drosophila virilis]
gi|194149940|gb|EDW65631.1| nonA [Drosophila virilis]
Length = 699
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 8/104 (7%)
Query: 28 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE--CDIVRNYGFVHI 85
P+++ T G N +++VGNL+++ E+RE+F PYG + E ++ +N+ F+ +
Sbjct: 274 PIEVAQETKFSGRN----RLYVGNLTNDITDEELREMFKPYGEIGEIFSNLEKNFTFLKV 329
Query: 86 D-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFI 128
D + K + L+G M G+ ++V A ++IL N+ F+
Sbjct: 330 DYHINAEKAKRALDGSMRKGRQLRVRFAP-NATILRVSNLTPFV 372
>gi|170592319|ref|XP_001900916.1| Splicing factor, proline-and glutamine-rich [Brugia malayi]
gi|158591611|gb|EDP30216.1| Splicing factor, proline-and glutamine-rich, putative [Brugia
malayi]
Length = 309
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-RNYGFVHIDSPDINKCIKE-LNGMMVD 103
++FVGNL ++ + E++ELF P+G + EC + + + F+ +D+ + KE ++G ++
Sbjct: 129 RLFVGNLPNDLKEQELKELFAPHGDIAECYLSGKGFAFLRLDTRAHAESAKEAIDGKIIH 188
Query: 104 GKPMKVVVA 112
G+P++V A
Sbjct: 189 GRPVRVRFA 197
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ +P +I S++ P T +F+ NL + + +
Sbjct: 96 NAADGERALEQLNYSLIKNRPCRI--MWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDT 153
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G V+ C + + YGFVH ++ + IK +NGM+++ K KV V IS
Sbjct: 154 FAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKNVNGMLLNDK--KVYVGHHIS 211
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 25/128 (19%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFV 49
E EE + A+ LN + + + L + A + K ++V
Sbjct: 275 ETHEEAQKAVDNLNDKDFHGRKLFVSRAQKKAEREEELRKAHEQARLEKLSKYQGLNLYV 334
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMM 101
NL D+ ++R F P+GT+ ++R+ +GFV SP + +K + E+N M
Sbjct: 335 KNLDDDVDDEKLRAEFEPFGTITSAKVMRDDKGVSKGFGFVCYSSPEEASKAVAEMNNKM 394
Query: 102 VDGKPMKV 109
+ KP+ V
Sbjct: 395 IGSKPLYV 402
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 15/123 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + SRK + T +++ N+
Sbjct: 180 HYETAEAAENAIKNVNGMLLNDKKVYVGHHISRKERQSKIDEMKAQFTNLYIKNIDPEVT 239
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
E LF G V I R+ +GFV+ ++ + K + LN G+ + V
Sbjct: 240 DEEFEALFREQGNVTSSVIQRDEEGRSRGFGFVNYETHEEAQKAVDNLNDKDFHGRKLFV 299
Query: 110 VVA 112
A
Sbjct: 300 SRA 302
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----------------EAATSRKGPNTPTTKV 47
+ E+ E+ A++ L+ +N + L + E A K +
Sbjct: 274 NFESHEQAAAAVETLHDTEINGRKLYVARAQKKSEREDELRKSYENAKQEKLSKYQGVNL 333
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNG 99
++ NL D+ ++R F P+GT+ C ++R+ +GFV SPD K + E+N
Sbjct: 334 YIKNLEDDIDDEKLRAEFEPFGTITSCKVMRDEKNTSKGFGFVCFSSPDEATKAVSEMNN 393
Query: 100 MMVDGKPMKVVVA 112
M+ KP+ V +A
Sbjct: 394 KMIGSKPLYVSLA 406
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+ +LN ++ + +I S++ P T +F+ NL + + +
Sbjct: 97 NAADGERALDQLNYSLIKNRACRI--MWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDT 154
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
F +G V+ C + + YGFVH ++ + IK +NGM+++ K KV V I
Sbjct: 155 FAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDK--KVFVGHHI 211
>gi|332029988|gb|EGI69813.1| Sex-lethal-like protein [Acromyrmex echinatior]
Length = 365
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 69
E+ TAI LNG V K LK+ A G T ++V NL N ++ ELF YG
Sbjct: 147 EDAATAISTLNGLQVQNKRLKVSFARP-SGEEIKETNLYVTNLPRNITESQIDELFSKYG 205
Query: 70 TVVECDIVRN--------YGFVHIDS-PDINKCIKELNGMMVDG--KPMKVVVA 112
+V+ +I+R+ FV D + + I L+G + +G +P+ V +A
Sbjct: 206 NIVQKNILRDKLTGLPRGVAFVRFDKREEAQEAIARLHGTIPEGGSEPLSVKIA 259
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 38 KGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY--------GFV-HIDSP 88
KG P T + + L N E+ LFV G V C ++++Y GFV + +
Sbjct: 88 KGNEEPRTNLIINYLPQNMNEKELYSLFVTIGPVESCRVMKDYKTGYSYGFGFVNYAKAE 147
Query: 89 DINKCIKELNGMMVDGKPMKVVVA 112
D I LNG+ V K +KV A
Sbjct: 148 DAATAISTLNGLQVQNKRLKVSFA 171
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 15/122 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ +N + A+ +N +I+N P++I S++ P+ + VF+ NL N +
Sbjct: 49 NFQNMADAECALDTMNFEILNGCPMRI--MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAM 106
Query: 62 RELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAG 113
+ F +G ++ C + ++ YGFVH D + I+++NGM+++GK KV V
Sbjct: 107 YDTFSAFGNILSCKVAQDETGQSKGYGFVHFDMEQSATQSIEKVNGMLLNGK--KVFVGR 164
Query: 114 FI 115
F+
Sbjct: 165 FV 166
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H + ++ +I+++NG ++N K + + RK T V++ N+ +N
Sbjct: 136 HFDMEQSATQSIEKVNGMLLNGKKVFVGRFVGRKDREKELGQKAKLFTNVYIKNIDENVN 195
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNG 99
E+ E+F YG++ C ++ R +GFV + P + K + EL+G
Sbjct: 196 DKELFEMFEKYGSITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVSELHG 245
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 30 KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFV 83
KIE +G N ++V NL D +R F +GT+ ++ + +GFV
Sbjct: 277 KIERMNRYQGIN-----LYVKNLDDTIDDEHLRREFSVFGTITSAKVMMDDGRSKGFGFV 331
Query: 84 HIDSPD-INKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFF 127
SP+ K + E+N +V KP+ V +A + LN +
Sbjct: 332 CFSSPEEATKAVTEMNNRIVGTKPLYVALAQRKEERKAHLNAQYL 376
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 41/153 (26%)
Query: 1 MSSGHMENDEEGRT----------------AIKELNGQIVNEKPLKI------------- 31
++S H+E D EG++ A++ELN + +N + L +
Sbjct: 257 ITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQNLYVGRAQKKRERIEEL 316
Query: 32 ----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNY 80
E A K +FV NL D+ + ++ E F P+GT+ ++ + +
Sbjct: 317 KRQYETARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSKGF 376
Query: 81 GFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
GFV SP + K I E+N M GKP+ V +A
Sbjct: 377 GFVCFSSPEEATKAITEMNQRMFHGKPLYVALA 409
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E R AI+ +NG ++N++ + + S+K + T V+V N+
Sbjct: 184 HYETAEAARAAIENVNGMLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFS 243
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGMMVDGKPMKV 109
E+R LF PYG + + ++ +GFV+ +S + K ++ELN ++G+ + V
Sbjct: 244 EEEMRNLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQNLYV 303
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 74
AI+E N NE +AA S + P+T + ++VG L+ + + E+F P G V
Sbjct: 24 AIQETNVSSGNEGE---DAADSTQLPDT-SASLYVGELNPSVNEASLFEIFSPVGQVSSI 79
Query: 75 DIVRN--------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVV 110
+ R+ Y +V+ D K I +LN ++DG+P +++
Sbjct: 80 RVCRDAVTKKSLGYAYVNFHKLEDGEKAIDDLNYSLIDGRPCRIM 124
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
+++LF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKDLFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGK 259
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ + +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E T+I+++NG ++N K + + RK T V+V N D
Sbjct: 136 HFETEESANTSIEKVNGMLLNAKKVFVGRFIPRKEREKELGEKAKLFTNVYVKNFGDELT 195
Query: 58 APEVRELFVPYGTVVECDIV------RNYGFVHIDSPDINK-CIKELNGMMV-DGKPMKV 109
++E+F YGT+ ++ R +GFV ++P+ + ++ELNG + DGK + V
Sbjct: 196 DESLKEMFEKYGTITSHRVMIKENKSRGFGFVAFENPESAEVAVQELNGKELGDGKVLYV 255
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 35/136 (25%)
Query: 7 ENDEEGRTAIKELNG--------------QIVNEKP---------LKIEAATSRKGPNTP 43
EN E A++ELNG Q NE+ LK+E T +G N
Sbjct: 230 ENPESAEVAVQELNGKELGDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVN-- 287
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKE 96
++V NL D+ +R+ F P+GT+ ++ + +GFV + + K + E
Sbjct: 288 ---LYVKNLDDSIDDERLRKEFSPFGTITSAKVMLEEGRSKGFGFVCFSAAEEATKAVTE 344
Query: 97 LNGMMVDGKPMKVVVA 112
+NG +V KP+ V +A
Sbjct: 345 MNGRIVGSKPLYVALA 360
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 15/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + VF+ NL N + + F
Sbjct: 55 DAERALDTMNFDLIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSA 112
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + N I+++NGM+++ K KV V FI
Sbjct: 113 FGNILSCKVAQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNAK--KVFVGRFI 166
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ KP +I S++ P T VF+ NL + +
Sbjct: 102 NTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 65 FVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 217
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + S+K + T V++ N+
Sbjct: 186 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVT 245
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E R++F +G + + R+ +GFV+ + D + E+N + G+ + V
Sbjct: 246 DEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYV 305
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 15/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A++ +N I+ +P++I S++ P+ + VF+ NL + + F
Sbjct: 64 DAERALEGMNFDIIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSA 121
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + NK I+++NGM+++GK KV V FI
Sbjct: 122 FGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGK--KVYVGRFI 175
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E +I+++NG ++N K + + RK T V+V N ++
Sbjct: 145 HFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFS 204
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGM-MVDGKPMK 108
+RE+F YG + ++ R +GFV + PD + ELNG +V+GKP+
Sbjct: 205 DEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLY 264
Query: 109 V 109
V
Sbjct: 265 V 265
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 25/131 (19%)
Query: 7 ENDEEGRTAIKELNG-QIVNEKPL-----------------KIEAATSRKGPNTPTTKVF 48
E+ + A ELNG ++V KPL K E S + ++
Sbjct: 240 EDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLY 299
Query: 49 VGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMM 101
V NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +
Sbjct: 300 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRI 359
Query: 102 VDGKPMKVVVA 112
V KP+ V +A
Sbjct: 360 VGTKPLYVALA 370
>gi|222635819|gb|EEE65951.1| hypothetical protein OsJ_21832 [Oryza sativa Japonica Group]
Length = 710
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKV 47
+ E E R A+K LNG+ + + L K E ++K T +
Sbjct: 310 NFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNL 369
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNG 99
++ NL D+ +R+LF +G V C ++ + GFV + D N I ++NG
Sbjct: 370 YLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNG 429
Query: 100 MMVDGKPMKVVVA 112
MV KP+ V VA
Sbjct: 430 KMVGKKPLYVAVA 442
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFV 66
E+ A++ LN +VN KP+++ S + P + VF+ NL N + E+F
Sbjct: 137 EDATRAMENLNFTVVNGKPIRV--MFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFS 194
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFI 115
+GT++ + + YGF+ +S K I LNGM+ +G+ K+ V FI
Sbjct: 195 SFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQ--KIFVGLFI 249
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVF-----------------V 49
E E+ + A+ E+NG+ +N K + + A + T + F V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D+ +++ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDDIDDERLQKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ ++ ++ A+ +N ++ KPL+I S++ P+ + +FV NL + +
Sbjct: 58 NFQHPKDAEHALDTMNFDVIKGKPLRI--MWSQRDPSLRKSGMGNIFVKNLDKSINNKAL 115
Query: 62 RELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGF 114
+ +G ++ C++V + YGFVH ++ + + I+++NGM+++G+ KV V F
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNGR--KVFVGQF 173
Query: 115 IS 116
S
Sbjct: 174 KS 175
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N + + + SRK V++ N ++
Sbjct: 144 HFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR--------NYGFVHIDSP-DI 90
P+ PT ++VG+L + + E F P G ++ + R NY +V+ P D
Sbjct: 6 PSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDA 65
Query: 91 NKCIKELNGMMVDGKPMKVV 110
+ +N ++ GKP++++
Sbjct: 66 EHALDTMNFDVIKGKPLRIM 85
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFV 49
E E+ + A+ E+NG+ +N K + K E T K ++V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +++ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 64/125 (51%), Gaps = 14/125 (11%)
Query: 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRA 58
+S + E + A+ +N ++ KP++I S++ P+ + VF+ NL+
Sbjct: 55 ASVNFEQPADAERALDTMNFDVIKGKPVRI--MWSQRDPSLRRSGVGNVFIKNLNKTIDN 112
Query: 59 PEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVV 111
+ + F +G ++ C +V + +GFVH ++ + + I+++NGM+++ + KV V
Sbjct: 113 KALYDTFSAFGNILSCKVVSDENGSKGHGFVHFETEEAAERAIEKMNGMLLNDR--KVFV 170
Query: 112 AGFIS 116
F S
Sbjct: 171 GRFKS 175
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTR 57
H E +E AI+++NG ++N++ + + S+K G T T V++ N D
Sbjct: 144 HFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
+ LF +G ++ ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 15/123 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEV 61
+ N E+G A+ ELN ++ +P +I S++ P+ T VF+ NL +
Sbjct: 127 NFHNMEDGEKALDELNYTLIKGRPCRI--MWSQRDPSLRKMGTGNVFIKNLDPAIDNKAL 184
Query: 62 RELFVPYGTVVECDI-------VRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAG 113
+ F +G ++ C + + YGFVH DS + N I+ +NGM+++ K KV V
Sbjct: 185 HDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDK--KVYVGH 242
Query: 114 FIS 116
+S
Sbjct: 243 HVS 245
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 29 LKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYG 81
+K+E +G N +F+ NL D ++ F +GT+ I+ + +G
Sbjct: 353 MKLEKMNKYQGVN-----LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFG 407
Query: 82 FVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
FV +P+ NK + E+N M+ GKP+ V +A
Sbjct: 408 FVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H ++ E AI+ +NG ++N+K + + SR+ + T V++ NL
Sbjct: 214 HFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEIT 273
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E +LF +G + +V R +GFV+ + + K + ELN GK + V
Sbjct: 274 EQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYV 333
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 22/161 (13%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAPEVR 62
N+E + AI++LNG ++N+K + + R+ T T V+V NL+++T +++
Sbjct: 173 NEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLK 232
Query: 63 ELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVAGF 114
F YG + ++++ +GFV+ ++ D + ++ LNG D K V A
Sbjct: 233 NAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQK 292
Query: 115 ISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKS 155
S + L V R KE A F+SS Y K+
Sbjct: 293 KSERETELRV-------RYEQNLKEA--ADKFQSSNLYVKN 324
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-----------------TTKV 47
+ EN ++ A++ LNG ++K + A + T ++ +
Sbjct: 261 NFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNL 320
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
+V NL + +++E+F P+GTV ++R+ GFV +P + + + +L+G
Sbjct: 321 YVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSG 380
Query: 100 MMVDGKPMKVVVA 112
M++ KP+ V +A
Sbjct: 381 KMIESKPLYVAIA 393
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 13/106 (12%)
Query: 18 ELNGQIVNEKPLKIEAATSRKGPNTPT----TKVFVGNLSDNTRAPEVRELFVPYGTVVE 73
+L GQ N + +A + G T T T ++VG+L N ++ + F GTVV
Sbjct: 5 QLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVT 64
Query: 74 CDIVRN--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVV 110
+ R+ YG+V+ +P D + I+ELN + + GKP++V+
Sbjct: 65 VRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVM 110
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVREL 64
N ++ AI+ELN + KP+++ S + P+ + +F+ NL ++ + +
Sbjct: 86 NPQDAARAIQELNYIPLYGKPIRV--MYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDT 143
Query: 65 FVPYGTVVECDIV-------RNYGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
F +G +V C + + YGFV + + K I++LNGM+++ K + V
Sbjct: 144 FSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
>gi|392340356|ref|XP_003754049.1| PREDICTED: RNA-binding protein with serine-rich domain 1-like
[Rattus norvegicus]
gi|392347868|ref|XP_003749954.1| PREDICTED: RNA-binding protein with serine-rich domain 1-like
[Rattus norvegicus]
Length = 282
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 12 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTV 71
GR K + +E P + E R+ P+ TKV +G LS N + E+F YG +
Sbjct: 105 GRRHDKRRSSGSKSEPPKRDEKERKRRSPSPKPTKVHIGRLSRNVTKDHIMEIFSTYGKI 164
Query: 72 VECD---------IVRNYGFVHIDSPD-INKCIKELNGMMVDGK 105
D + + Y +V ++PD K +K ++G +DG+
Sbjct: 165 KMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQ 208
>gi|391330636|ref|XP_003739762.1| PREDICTED: nucleolysin TIAR-like [Metaseiulus occidentalis]
Length = 364
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 16/121 (13%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATS---RKGPNTPTTK----VFVGNLSDNTRAPE 60
N + +AI +N ++ + L++ A+S ++ P+ P T +FVG+LS +
Sbjct: 60 NHSDASSAITAMNARMCLGRELRVNWASSAIQQQTPHRPDTSKHHHIFVGDLSPQIETSD 119
Query: 61 VRELFVPYGTVVECDIVRN--------YGFVHI-DSPDINKCIKELNGMMVDGKPMKVVV 111
+RE F P+G + +C +V++ YGFV + D I ++G + + ++
Sbjct: 120 LREAFSPFGEISDCRVVKDATTQKSKGYGFVSFTNKQDAENAIHTMDGSWLGSRAIRTNW 179
Query: 112 A 112
A
Sbjct: 180 A 180
>gi|390342772|ref|XP_003725734.1| PREDICTED: RNA-binding protein lark-like [Strongylocentrotus
purpuratus]
Length = 235
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+FVGNL +++ LF G VVECD+++NYGFVH+ + + + + +L G + G
Sbjct: 4 KLFVGNLPQGCTNDDLKTLFATIGQVVECDVLKNYGFVHMSTIEEALEAVSKLGGHRLYG 63
Query: 105 KPMKV 109
++V
Sbjct: 64 NAIRV 68
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+GN+ G + + ++ LF G+VVECDV+KNYGFV
Sbjct: 4 KLFVGNLPQGCTNDDLKTLFATIGQVVECDVLKNYGFV 41
>gi|359478105|ref|XP_002269583.2| PREDICTED: flowering time control protein FPA-like [Vitis vinifera]
Length = 878
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 69
E+ R A + L G +V P+KIE A P P ++VG S +T E+ F+ +G
Sbjct: 63 EDARAAREALQGMVVLGTPMKIEFAR----PAKPCKSLWVGGFSPSTTKGELENEFLKFG 118
Query: 70 TVVECDIV--RNYGFV-HIDSPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIF 126
+ + RN V ++ D ++ +K LNG + G ++V +S L IF
Sbjct: 119 KIEDFKFFWDRNSALVEYVKLEDASQALKGLNGKQIGGAMIRVDFLRLQTSRRFNLYSIF 178
Query: 127 FIRC 130
F+ C
Sbjct: 179 FLLC 182
>gi|356511826|ref|XP_003524623.1| PREDICTED: uncharacterized protein LOC100782808 [Glycine max]
Length = 274
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 37 RKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS- 87
R + P+TK+F+G +S +T +RE F YG VV+ I+ R +GF+ S
Sbjct: 34 RSMSSAPSTKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSV 93
Query: 88 PDINKCIKELNGMMVDGKPMKVVVA 112
+ + I+ L+G + G+P++V A
Sbjct: 94 EEASSAIQALDGQDLHGRPIRVNYA 118
>gi|347967649|ref|XP_312633.5| AGAP002335-PA [Anopheles gambiae str. PEST]
gi|333468363|gb|EAA07505.5| AGAP002335-PA [Anopheles gambiae str. PEST]
Length = 458
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 13/115 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSR-KGPNTPTTK---VFVGNLSDNTRAPEVRE 63
N + +TA+ +N ++ +K +++ ATS P T T++ +FVG+LS +RE
Sbjct: 55 NHQSAQTALAAMNKRMFLKKEIRVNWATSAGNQPKTDTSQHHHIFVGDLSPEIDTETLRE 114
Query: 64 LFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
F P+G + C IVR+ Y FV + + I +NG + + ++
Sbjct: 115 AFAPFGEISNCRIVRDPQTLKSRGYAFVSFVKKAEAENAIAMMNGQWLGSRSIRT 169
>gi|349578366|dbj|GAA23532.1| K7_Nsr1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 416
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 21/125 (16%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLS 53
EN AI+E+ G+ ++ +P+ + +TS+ P+ P+ +F+GNLS
Sbjct: 218 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLS 277
Query: 54 DNTRAPEVRELFVPYGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
N + ELF +G VV E + + +G+V + D K + L G +D
Sbjct: 278 FNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDN 337
Query: 105 KPMKV 109
+P+++
Sbjct: 338 RPVRL 342
>gi|6321599|ref|NP_011675.1| Nsr1p [Saccharomyces cerevisiae S288c]
gi|128576|sp|P27476.1|NSR1_YEAST RecName: Full=Nuclear localization sequence-binding protein;
AltName: Full=p67
gi|4058|emb|CAA40472.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae]
gi|1045265|emb|CAA59817.1| NSR1 [Saccharomyces cerevisiae]
gi|1323271|emb|CAA97173.1| NSR1 [Saccharomyces cerevisiae]
gi|285812350|tpg|DAA08250.1| TPA: Nsr1p [Saccharomyces cerevisiae S288c]
gi|392299413|gb|EIW10507.1| Nsr1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 414
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 21/125 (16%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLS 53
EN AI+E+ G+ ++ +P+ + +TS+ P+ P+ +F+GNLS
Sbjct: 216 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLS 275
Query: 54 DNTRAPEVRELFVPYGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
N + ELF +G VV E + + +G+V + D K + L G +D
Sbjct: 276 FNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDN 335
Query: 105 KPMKV 109
+P+++
Sbjct: 336 RPVRL 340
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|66814388|ref|XP_641373.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|60469429|gb|EAL67423.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 412
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
+V+VG +S+ T + + F+ +G V+ CD+ Y FV D+ I+E++ +VDG
Sbjct: 176 RVYVGRISNKTTRESLEDSFLKFGKVLSCDVKNGYAFVEFDNEKSARDAIEEMHDSIVDG 235
Query: 105 KPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECPR 142
+ K++V S + F R GR GHW++ CP+
Sbjct: 236 E--KILVEKSHSGKKH-PDECFICR-GR-GHWARSCPK 268
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 302 FSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
FS + ++++G ++ T+ E + F K+GKV+ CDV Y FV
Sbjct: 169 FSLLAERRVYVGRISNKTTRESLEDSFLKFGKVLSCDVKNGYAFV 213
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVF-----------------V 49
E E+ + A+ E+NG+ +N K + + A + T + F V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D+ +++ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDDIDDERLQKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ ++ ++ A+ +N ++ KPL+I S++ P+ + +FV NL + +
Sbjct: 58 NFQHPKDAEHALDTMNFDVIKGKPLRI--MWSQRDPSLRKSGMGNIFVKNLDKSINNKAL 115
Query: 62 RELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGF 114
+ +G ++ C++V + YGFVH ++ + + I+++NGM+++G+ KV V F
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNGR--KVFVGQF 173
Query: 115 IS 116
S
Sbjct: 174 KS 175
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N + + + SRK V++ N ++
Sbjct: 144 HFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 38.1 bits (87), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR--------NYGFVHIDSP-DI 90
P+ PT ++VG+L + + E F P G ++ + R NY +V+ P D
Sbjct: 6 PSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDA 65
Query: 91 NKCIKELNGMMVDGKPMKVV 110
+ +N ++ GKP++++
Sbjct: 66 EHALDTMNFDVIKGKPLRIM 85
>gi|403343546|gb|EJY71107.1| RNA binding protein, putative [Oxytricha trifallax]
Length = 388
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 22/129 (17%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRK--------GPNTPTTK-----VFVGNL 52
E +E +T +E + + V EK E +SRK G N T ++V NL
Sbjct: 56 KEQSQERQTMSRERSDRKVQEKDTFREENSSRKYDRGNKRSGSNDSATNNQGSSLYVANL 115
Query: 53 SDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVD 103
S + ++R+LF YGT+ +C +V R + FV D+P D + +LNG +
Sbjct: 116 SKRVKDSDLRDLFERYGTIQKCTVVVDPITSESRGFAFVVYDNPQDAEDSLSKLNGYDLL 175
Query: 104 GKPMKVVVA 112
GK ++V +
Sbjct: 176 GKEIRVEKS 184
>gi|259146662|emb|CAY79919.1| Nsr1p [Saccharomyces cerevisiae EC1118]
Length = 414
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 21/125 (16%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLS 53
EN AI+E+ G+ ++ +P+ + +TS+ P+ P+ +F+GNLS
Sbjct: 216 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLS 275
Query: 54 DNTRAPEVRELFVPYGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
N + ELF +G VV E + + +G+V + D K + L G +D
Sbjct: 276 FNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDN 335
Query: 105 KPMKV 109
+P+++
Sbjct: 336 RPVRL 340
>gi|190406825|gb|EDV10092.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae RM11-1a]
gi|207345058|gb|EDZ72003.1| YGR159Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272028|gb|EEU07041.1| Nsr1p [Saccharomyces cerevisiae JAY291]
gi|323354844|gb|EGA86677.1| Nsr1p [Saccharomyces cerevisiae VL3]
gi|365765431|gb|EHN06939.1| Nsr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 416
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 21/125 (16%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLS 53
EN AI+E+ G+ ++ +P+ + +TS+ P+ P+ +F+GNLS
Sbjct: 218 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLS 277
Query: 54 DNTRAPEVRELFVPYGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
N + ELF +G VV E + + +G+V + D K + L G +D
Sbjct: 278 FNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDN 337
Query: 105 KPMKV 109
+P+++
Sbjct: 338 RPVRL 342
>gi|151943436|gb|EDN61747.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae YJM789]
Length = 418
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 21/125 (16%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLS 53
EN AI+E+ G+ ++ +P+ + +TS+ P+ P+ +F+GNLS
Sbjct: 220 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLS 279
Query: 54 DNTRAPEVRELFVPYGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
N + ELF +G VV E + + +G+V + D K + L G +D
Sbjct: 280 FNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDN 339
Query: 105 KPMKV 109
+P+++
Sbjct: 340 RPVRL 344
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|440804043|gb|ELR24926.1| zinc knuckle domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 263
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 64 LFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCL 122
+F YG ++ CD+ +GFV D D +++L+G + GK + V A
Sbjct: 1 MFYKYGRIIRCDVKVGFGFVEYEDRRDAEDAVRDLDGAHLMGKRIAVEWAKGERRATGTR 60
Query: 123 NVIFFIRCGRGGHWSKEC 140
+ F RCG GHW+++C
Sbjct: 61 SDACF-RCGEEGHWARDC 77
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 41/153 (26%)
Query: 1 MSSGHMENDEEGR----------------TAIKELN-----GQIVN------------EK 27
++S H+E D EG+ A++ELN GQ ++ E
Sbjct: 249 ITSAHLEKDNEGKLRGFGFVNYENHNDAAKAVEELNETDFKGQTLHVGRAQKKHERLQEL 308
Query: 28 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------Y 80
+ EA K +FV NL D ++ E F PYGT+ ++R+ +
Sbjct: 309 KKQYEAFRLEKLEKYQGVNLFVKNLDDTIDDQKLEEEFAPYGTITSVKVMRSENGKSKGF 368
Query: 81 GFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
GFV +P + K I E N +V GKP+ V +A
Sbjct: 369 GFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 401
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E+DE + AI +NG ++N + + + S+K + T V+V N+ +T
Sbjct: 176 HFEDDEAAKEAIDAINGMLLNGQEVYVAQHVSKKDRQSKLDEAKANFTNVYVKNIHPDTG 235
Query: 58 APEVRELFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
E E F G + + +R +GFV+ ++ D K ++ELN G+ + V
Sbjct: 236 DEEFEEFFTKVGPITSAHLEKDNEGKLRGFGFVNYENHNDAAKAVEELNETDFKGQTLHV 295
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 20/123 (16%)
Query: 8 NDEE-GRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEV 61
ND E G+TAI++LN + P +I + + +KG + +F+ NL + +
Sbjct: 91 NDHEAGKTAIEKLNYAPIKGVPCRIMWSQRDPSMRKKG----SGNIFIKNLHPDIDNKAL 146
Query: 62 RELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAG 113
+ F +G ++ C I R +GFVH + + K I +NGM+++G+ +V VA
Sbjct: 147 HDTFSVFGNILSCKIATDEAGNSRGFGFVHFEDDEAAKEAIDAINGMLLNGQ--EVYVAQ 204
Query: 114 FIS 116
+S
Sbjct: 205 HVS 207
>gi|195053974|ref|XP_001993901.1| GH22178 [Drosophila grimshawi]
gi|193895771|gb|EDV94637.1| GH22178 [Drosophila grimshawi]
Length = 385
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS 87
T KVFVG+L + E+R LF YG VVECDI+ GFVH+++
Sbjct: 3 TAKVFVGSLPPGCKPEELRHLFTNYGVVVECDIMNRCGFVHLET 46
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+ T K+F+G++ PG E +R LF YG VVECD++ GFV
Sbjct: 1 MSTAKVFVGSLPPGCKPEELRHLFTNYGVVVECDIMNRCGFV 42
>gi|255644623|gb|ACU22814.1| unknown [Glycine max]
gi|255644635|gb|ACU22820.1| unknown [Glycine max]
gi|255644651|gb|ACU22828.1| unknown [Glycine max]
gi|255648053|gb|ACU24482.1| unknown [Glycine max]
Length = 167
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 22/123 (17%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG+LS TR+ ++ F YG V D+ ++ FV P D + L+G V
Sbjct: 10 NTRLYVGHLSSRTRSRDLERAFSRYGRVRGVDMKNDFAFVDFSDPRDADDARYNLDGRDV 69
Query: 103 DGKPMKVVVA-------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSS 149
DG + V A G C N CG GHW+++C +AG++++
Sbjct: 70 DGSRIIVEFAKGAPRGSREYLGRGPPPGSGRCFN------CGLDGHWARDC-KAGDWKNK 122
Query: 150 GCY 152
CY
Sbjct: 123 -CY 124
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|397517067|ref|XP_003828741.1| PREDICTED: RNA-binding protein 14 isoform 7 [Pan paniscus]
gi|426369339|ref|XP_004051650.1| PREDICTED: RNA-binding protein 14 isoform 6 [Gorilla gorilla
gorilla]
Length = 129
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
+ T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK Y
Sbjct: 76 LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKGY 114
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 5 HMENDEEGRTAIKELNGQIVNE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G + + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRP-LNTWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNY 80
LF G V+ECD+V+ Y
Sbjct: 98 LFERRGRVIECDVVKGY 114
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNG 99
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHG 57
>gi|344304396|gb|EGW34628.1| hypothetical protein SPAPADRAFT_57674 [Spathaspora passalidarum
NRRL Y-27907]
Length = 414
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 62/127 (48%), Gaps = 23/127 (18%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR--------------KGPNTPTTKVFVGN 51
+N + A+ E+ G+ ++ +P+ ++ +T + P+ P+ +F+GN
Sbjct: 223 FDNKDSAEKALVEMQGKEIDGRPINLDMSTGKPHASKSNDRAKQFGDTPSAPSDTLFIGN 282
Query: 52 LSDNTRAPEVRELFVPYGTVVECDI--------VRNYGFVHIDSPDINK-CIKELNGMMV 102
LS N + + E+F +GTV+ C I + +G+V S D K ++ LNG +
Sbjct: 283 LSFNAQRDNLFEIFGQHGTVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGEYI 342
Query: 103 DGKPMKV 109
+G+ ++
Sbjct: 343 EGRACRL 349
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E DE AIK +NG ++NEK + + +K + T V+V N+S
Sbjct: 194 HYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNISPEAT 253
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+ R+LF YG V + R+ +GFV+ + + K + ELNG G+ + V
Sbjct: 254 EDDFRQLFEQYGDVTSSSLARDQEGKSRGFGFVNFTTHESAAKAVDELNGKDFRGQDLYV 313
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 13/110 (11%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 67
+G A++ELN I+ +P +I S++ P T VF+ NL + + F
Sbjct: 113 DGEKALEELNYTIIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAA 170
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+G ++ C + ++ YGFVH ++ + + IK +NGM+++ K + V
Sbjct: 171 FGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYV 220
>gi|226509575|ref|NP_001149184.1| LOC100282806 [Zea mays]
gi|195625314|gb|ACG34487.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR----KGPN---TPTTKVFVGNLSDNTRA 58
M EE AI+ N ++ + L + A+SR + P P + +VGNL
Sbjct: 156 MSTVEEADKAIEMFNRYDISGRLLNVNRASSRGTRMERPQRQFAPAFRAYVGNLPWQVDD 215
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
+ +LF +G VV+ +V R +GFV + ++N I L+G +DG+P++V
Sbjct: 216 SRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQELDGRPLRV 275
Query: 110 VVAG 113
VA
Sbjct: 276 NVAA 279
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AIK++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIKKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + IK++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIKKMNGMLLNDR--KVFVGRFKS 175
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 14/112 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ +N ++ KP++I S++ P+ + +F+ NL + + + F +G +
Sbjct: 68 ALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 72 VECDIV------RNYGFVHIDSPDINKCIKE-LNGMMVDGKPMKVVVAGFIS 116
+ C +V + YGFVH ++ + + + E +NGM+++ + KV V F S
Sbjct: 126 LSCKVVCDENGSKGYGFVHFETQEAAERVSEKMNGMLLNDR--KVFVGRFKS 175
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E +++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERVSEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|325972712|ref|YP_004248903.1| RNP-1 like RNA-binding protein [Sphaerochaeta globus str. Buddy]
gi|324027950|gb|ADY14709.1| RNP-1 like RNA-binding protein [Sphaerochaeta globus str. Buddy]
Length = 92
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKE 96
K++VGNLS NT E+R+LF YGTVV +I+ + +GFV + + + I +
Sbjct: 4 KIYVGNLSYNTSEEELRDLFAQYGTVVSANIIIDRETRRPKGFGFVEMQEDAAADAAISQ 63
Query: 97 LNGMMVDGKPMKV 109
L+G + G+ ++V
Sbjct: 64 LDGKEIGGRNLRV 76
>gi|195384832|ref|XP_002051116.1| GJ13991 [Drosophila virilis]
gi|194147573|gb|EDW63271.1| GJ13991 [Drosophila virilis]
Length = 725
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKC 93
P T + V L E+R LFV +G V C ++R+ YGFV ++ D K
Sbjct: 100 PKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKA 159
Query: 94 IKELNGMMVDGKPMKVVVA 112
I LNG+ + K +KV +A
Sbjct: 160 INALNGLRLQNKTIKVSIA 178
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 23/109 (21%)
Query: 9 DEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
E+ AI LNG + K +K+ A S KG N ++V L N ++ L
Sbjct: 153 QEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGAN-----LYVSGLPKNMTQSDLESL 207
Query: 65 FVPYGTVVE----CD---------IVRNYGFVHIDSP-DINKCIKELNG 99
F PYG ++ CD + + GF+ D + ++ IKELNG
Sbjct: 208 FSPYGKIITSRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNG 256
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 13/91 (14%)
Query: 30 KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGF 82
K+E + +G N +++ NL D+ ++R F P+GT+ C ++R+ +GF
Sbjct: 318 KMEKLSKYQGVN-----LYIKNLEDDVDDEKLRAEFEPFGTITSCKVMRDDKSTSKGFGF 372
Query: 83 VHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
V SPD K + E+N M+ KP+ V +A
Sbjct: 373 VCFSSPDEATKAVAEMNNKMIGSKPLYVSLA 403
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ + +I S++ P T +F+ NL + + +
Sbjct: 94 NTSDGERALEQLNYSLIKNRACRI--MWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDT 151
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFIS 116
F +G V+ C + + YGFVH ++ + + IK +NGM+++ K KV V IS
Sbjct: 152 FAAFGNVLSCKVATDEHGRSKGYGFVHYETGEAAETAIKAVNGMLLNDK--KVYVGYHIS 209
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E TAIK +NG ++N+K + + SRK + T +++ NL +
Sbjct: 178 HYETGEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLDEMKAQFTNLYIKNLDTSVT 237
Query: 58 APEVRELFVPYGTV----VECDIVRN---YGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
E E+F YG V V+ D N +GFV+ + + + L+ + GK + V
Sbjct: 238 QDEFEEMFQKYGNVTSAIVQVDEEGNSKGFGFVNYEHHEEAQSAVDALHDTDIRGKKLFV 297
Query: 110 VVA 112
A
Sbjct: 298 SRA 300
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVREL 64
N ++G A++ELN ++ + +I S++ P+ T T +F+ NL + +
Sbjct: 129 NADDGEKALEELNYSLIKGRACRI--MWSQRDPSLRKTGTGNIFIKNLDPAIDNKALHDT 186
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +GT++ C + + YGFVH S D N I+ +NGM+++ K KV V +S
Sbjct: 187 FSAFGTILSCKVALDEYGNSKGYGFVHFASIDSANAAIEHVNGMLLNDK--KVYVGHHVS 244
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 29 LKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYG 81
+K+E + +G N +F+ NLSD ++ F +GT+ ++ + +G
Sbjct: 352 MKLEKMSKYQGVN-----LFIKNLSDEVDDNLLKTEFSAFGTITSAKVMTDENGKSKGFG 406
Query: 82 FVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
FV SP+ K I E+N M+ GKP+ V +A
Sbjct: 407 FVCYSSPEEATKAIAEMNQRMLAGKPLYVALA 438
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H + + AI+ +NG ++N+K + + SR+ + T V++ N+
Sbjct: 213 HFASIDSANAAIEHVNGMLLNDKKVYVGHHVSRRDRQSKFEAMKANFTNVYIKNIDPEVT 272
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E LF +G + +V R +GFV+ +S + K + E+N GK + V
Sbjct: 273 DEEFSGLFEKFGAITSFSLVKDESGKPRGFGFVNFESHEAAQKAVDEMNDYEFHGKKLYV 332
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 130 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 189
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 190 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 249
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 250 ATKPLYVALA 259
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 35 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 94
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 95 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 154
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + S+K T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFISS 117
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKSQ 176
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 60/113 (53%), Gaps = 15/113 (13%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPE 60
+N+E + AI +LNG ++N+K + + RK TT V+V NLS++T E
Sbjct: 174 DNEESAQGAIDKLNGMLMNDKQVYV-GHFLRKQERESTTGMTKFQNVYVKNLSESTTDDE 232
Query: 61 VRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGK 105
++++F +G + ++R+ +GF++ ++ D K ++ LNG D K
Sbjct: 233 LKKVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDK 285
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR-------KGPNTPTTK----------V 47
+ E E+ A++ LNG+ ++K + A + K T K +
Sbjct: 263 NFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGLNL 322
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNG 99
+V NL D +++ELF +GT+ C ++R+ GFV S + ++ + E+NG
Sbjct: 323 YVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMNG 382
Query: 100 MMVDGKPMKVVVA 112
M+ KP+ V +A
Sbjct: 383 KMIVSKPLYVALA 395
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 15/119 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVREL 64
N + A++ LN VN K +++ S + P + + +F+ NL + + +
Sbjct: 88 NPNDASRAMEMLNFTPVNGKSIRV--MYSHRDPTLRKSGSANIFIKNLDKSIDNKALHDT 145
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFI 115
F +G ++ C I + YGFV D+ + + I +LNGM+++ K +V V F+
Sbjct: 146 FSSFGNILSCKIATDSNGQSKGYGFVQYDNEESAQGAIDKLNGMLMNDK--QVYVGHFL 202
>gi|410080926|ref|XP_003958043.1| hypothetical protein KAFR_0F03120 [Kazachstania africana CBS 2517]
gi|372464630|emb|CCF58908.1| hypothetical protein KAFR_0F03120 [Kazachstania africana CBS 2517]
Length = 412
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 22/126 (17%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-------------PNTPTTKVFVGNL 52
EN E A+KE++G+ ++ + + + +TS+ P+ P+ +F+GNL
Sbjct: 213 FENKEYAEKAVKEMHGKEIDGREINCDMSTSKPAAGNNDRAKKFGDVPSEPSETLFLGNL 272
Query: 53 SDNTRAPEVRELFVPYGTVV--------ECDIVRNYGFV-HIDSPDINKCIKELNGMMVD 103
S N + E+F +G +V E + + +G+V + + D K + L G +D
Sbjct: 273 SFNADRDNISEMFSKFGEIVSVRIPTHPETEQPKGFGYVQYTNVEDAKKALDALQGEYID 332
Query: 104 GKPMKV 109
+P+++
Sbjct: 333 NRPVRL 338
>gi|195504962|ref|XP_002099304.1| GE10834 [Drosophila yakuba]
gi|194185405|gb|EDW99016.1| GE10834 [Drosophila yakuba]
Length = 464
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEV 61
N + TA+ +N ++ +K +K+ ATS N P T +FVG+LS +
Sbjct: 54 NYQAATTALTAMNKRLFLDKEIKVNWATSPG--NQPKTDISSHHHIFVGDLSPEIETETL 111
Query: 62 RELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
RE F P+G + C IVR+ Y FV + + I+ +NG + + ++
Sbjct: 112 REAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRT 168
>gi|410076202|ref|XP_003955683.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
gi|372462266|emb|CCF56548.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
Length = 582
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----------------EAATSRKGPNTPTTKV 47
+ EN E+ A++ELN + L + EA K +
Sbjct: 267 NYENHEDALKAVEELNNTEFKGQELYVGRAQKKYERMQALKQQYEATRLEKMAKYQGVNL 326
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
F+ NL D+ +++E F P+GT+ ++R +GFV SP + K I E N
Sbjct: 327 FIKNLDDSIDDEKLKEEFAPFGTITSTKVMRTENGKSKGFGFVCFSSPEEATKAITEKNQ 386
Query: 100 MMVDGKPMKVVVA 112
+V GKP+ V +A
Sbjct: 387 QIVAGKPLYVAIA 399
>gi|195051457|ref|XP_001993098.1| GH13638 [Drosophila grimshawi]
gi|193900157|gb|EDV99023.1| GH13638 [Drosophila grimshawi]
Length = 726
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKC 93
P T + V L E+R LFV +G V C ++R+ YGFV ++ D K
Sbjct: 111 PKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKA 170
Query: 94 IKELNGMMVDGKPMKVVVA 112
I LNG+ + K +KV +A
Sbjct: 171 INALNGLRLQNKTIKVSIA 189
>gi|145352790|ref|XP_001420719.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580954|gb|ABO99012.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 161
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 16/106 (15%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTRAPEVR 62
E+ ++A +NG + ++P+++ T+ + G P ++VG ++++ +R
Sbjct: 56 EQAKSAATSMNGALFGDRPMEVRLKTAPREEPRRDSGSFDPDANLYVGGMTESMTEESLR 115
Query: 63 ELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNG 99
E+F PYG V + ++R+ YGFV +D + I L+G
Sbjct: 116 EIFAPYGLVQKTKLIRDHATQVPKGYGFVQMMDVSHAHAAIAALDG 161
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 254 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 313
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 314 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 373
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 374 ATKPLYVALA 383
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 159 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 218
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 219 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 278
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ +N ++ KP++I S++ P+ + +F+ NL + + + F +G +
Sbjct: 83 ALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 140
Query: 72 VECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 141 LSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 190
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|194910009|ref|XP_001982056.1| GG12380 [Drosophila erecta]
gi|190656694|gb|EDV53926.1| GG12380 [Drosophila erecta]
Length = 464
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEV 61
N + TA+ +N ++ +K +K+ ATS N P T +FVG+LS +
Sbjct: 54 NYQAATTALTAMNKRLFLDKEIKVNWATSPG--NQPKTDISSHHHIFVGDLSPEIETETL 111
Query: 62 RELFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
RE F P+G + C IVR+ Y FV + + I+ +NG + + ++
Sbjct: 112 REAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRT 168
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 4 GHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
G + E +T +K GQ+ +K KIE + ++V NL D +R+
Sbjct: 264 GRAQKKVERQTELKHKFGQMKQDK-HKIERVPQDRSVRCKGVNLYVKNLDDGIDDERLRK 322
Query: 64 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
F P+GT+ + + +GFV SP + K + E+NG +V KP+ V +A
Sbjct: 323 EFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALA 378
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E EE AI+++NG +N+ + + SR+ T V++ NL ++
Sbjct: 144 HFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K ++E+NG ++GK + V
Sbjct: 204 DERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYV 263
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 66
E+ A+ +N ++ KP++I S++ P+ + +FV NL + + + + F
Sbjct: 63 EDAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFS 120
Query: 67 PYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM ++ KV V F S
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDH--KVFVGRFKS 175
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKELFGKFGPALSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 275 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 334
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 335 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 394
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 395 ATKPLYVALA 404
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 180 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 239
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 240 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 299
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 61/117 (52%), Gaps = 14/117 (11%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 66
++ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 99 QDAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 156
Query: 67 PYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 157 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 211
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 207 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 266
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 267 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 326
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 327 ATKPLYVALA 336
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 112 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 171
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 172 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 231
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----------------EAATSRKGPNTPTTKV 47
+ E+ E A++ELN + +N + + + EA K +
Sbjct: 279 NFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNL 338
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNG 99
FV NL D + ++ E F P+GT+ ++ + +GFV +P + K I E+N
Sbjct: 339 FVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNT 398
Query: 100 MMVDGKPMKVVVA 112
M++GKP+ V +A
Sbjct: 399 RMINGKPLYVALA 411
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 180 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 239
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 240 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 299
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 300 ATKPLYVALA 309
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 85 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 144
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 145 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 204
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ +N ++ KP++I S++ P+ + +F+ NL + + + F +G +
Sbjct: 9 ALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 66
Query: 72 VECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 67 LSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 116
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 12 GRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPY 68
G A+ ELN ++ KP +I S++ P T VF+ NL + + F +
Sbjct: 96 GERALDELNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAF 153
Query: 69 GTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 154 GNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 207
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 10 EEGRTAIKELNGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNL 52
E + A++E+N + V + L + EAA K ++V NL
Sbjct: 274 ESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNL 333
Query: 53 SDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD 89
+D+ ++RELF PYGT+ ++R+ V +P+
Sbjct: 334 TDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPE 370
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + S+K + T +++ N+
Sbjct: 176 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVE 235
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E R+LF +G + + R+ +GFV+ + + ++E+N V + + V
Sbjct: 236 DEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYV 295
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ +N ++ KP++I S++ P+ + +F+ NL + + + F +G +
Sbjct: 68 ALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 72 VECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 126 LSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 25/131 (19%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFV 49
EN E+ A++ LN +N + L + EA K +FV
Sbjct: 267 ENHEDAVKAVEALNESDLNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFV 326
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMM 101
NL D+ ++ E F PYGT+ ++R+ +GFV +P + K I E N +
Sbjct: 327 KNLDDSVDDEKLEEEFAPYGTITSAKVMRSENGKSKGFGFVCFSTPEEATKAITEKNQQI 386
Query: 102 VDGKPMKVVVA 112
V GKP+ V +A
Sbjct: 387 VAGKPLYVAIA 397
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E + + AI LNG ++N + + + SRK ++ T ++V N++ T
Sbjct: 172 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 231
Query: 58 APEVRELFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+ +E+F +G +V + ++ +GFV+ ++ D K ++ LN ++G+ + V
Sbjct: 232 DEKFQEMFAQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYV 291
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|363807264|ref|NP_001242616.1| uncharacterized protein LOC100813237 [Glycine max]
gi|255647309|gb|ACU24121.1| unknown [Glycine max]
Length = 299
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 16/121 (13%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG LS TR+ ++ +F YG V D+ ++ FV P D + L+G V
Sbjct: 10 NTRLYVGRLSSRTRSRDLERVFSRYGRVRGVDMKNDFAFVEFSDPRDADDARYNLDGRDV 69
Query: 103 DGKPMKVVVAGFISSILSCLNVIFFIR-----------CGRGGHWSKECPRAGNFRSSGC 151
+G +++V + + R CG GHW+++C +AG++++ C
Sbjct: 70 EG--SRIIVEFAKGGPRGSRDREYMGRGPPPGSGRCFNCGIDGHWARDC-KAGDWKNK-C 125
Query: 152 Y 152
Y
Sbjct: 126 Y 126
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 12 GRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPY 68
G A+ ELN ++ KP +I S++ P T VF+ NL + + F +
Sbjct: 96 GERALDELNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAF 153
Query: 69 GTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 154 GNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 207
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 10 EEGRTAIKELNGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNL 52
E + A++E+N + V + L + EAA K ++V NL
Sbjct: 274 ESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNL 333
Query: 53 SDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD 89
+D+ ++RELF PYGT+ ++R+ V +P+
Sbjct: 334 TDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPE 370
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + S+K + T +++ N+
Sbjct: 176 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVE 235
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E R+LF +G + + R+ +GFV+ + + ++E+N V + + V
Sbjct: 236 DEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYV 295
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 243 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 302
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 303 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 362
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 363 ATKPLYVALA 372
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 148 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 207
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 208 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 267
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 60/118 (50%), Gaps = 14/118 (11%)
Query: 11 EGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 65
+ + A++ LN ++ +P++I + + + G +F+ NL + + + F
Sbjct: 64 DAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGGGVGNIFIKNLDKSIDNKALYDTF 123
Query: 66 VPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 124 SAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 179
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ + +I S++ P T +F+ NL + + +
Sbjct: 106 NAADGERALEQLNYSLIKNRACRI--MWSQRDPALRKTGQGNIFIKNLDEQIDHKALHDT 163
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G V+ C + R +GFVH D+ + + IK +NGM+++ K KV V +IS
Sbjct: 164 FAAFGNVLSCKVATDENGRSRGFGFVHYDTAEAADTAIKAVNGMLLNDK--KVFVGHYIS 221
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 13/88 (14%)
Query: 30 KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGF 82
K+E + +G N +++ NL D+ ++R F P+GT+ C I+R+ +GF
Sbjct: 330 KMEKLSKYQGAN-----LYIKNLEDDMDDDKLRAEFEPFGTITSCKIMRDEKGTSKGFGF 384
Query: 83 VHIDSP-DINKCIKELNGMMVDGKPMKV 109
V SP + K + E+N M+ KP+ V
Sbjct: 385 VCYSSPEEATKAVAEMNNKMLGSKPLYV 412
>gi|195434178|ref|XP_002065080.1| GK14865 [Drosophila willistoni]
gi|194161165|gb|EDW76066.1| GK14865 [Drosophila willistoni]
Length = 725
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKC 93
P T + V L E+R LFV +G V C ++R+ YGFV ++ D K
Sbjct: 119 PKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKA 178
Query: 94 IKELNGMMVDGKPMKVVVA 112
I LNG+ + K +KV +A
Sbjct: 179 INALNGLRLQNKTIKVSIA 197
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 23/109 (21%)
Query: 9 DEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
E+ AI LNG + K +K+ A S KG N ++V L N ++ L
Sbjct: 172 QEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGAN-----LYVSGLPKNMTQSDLESL 226
Query: 65 FVPYGTVVE----CD---------IVRNYGFVHIDSP-DINKCIKELNG 99
F PYG ++ CD + + GF+ D + ++ IKELNG
Sbjct: 227 FSPYGKIITSRILCDNITDEHAPGLSKGVGFIRFDQRFEADRAIKELNG 275
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 175 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 234
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 235 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 294
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 295 ATKPLYVALA 304
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 80 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 139
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 140 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 199
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ +N ++ KP++I S++ P+ + +F+ NL + + + F +G +
Sbjct: 4 ALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 61
Query: 72 VECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 62 LSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 111
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 236 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 295
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 296 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 355
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 356 ATKPLYVALA 365
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVV----ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF P +V E + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 260
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|242082447|ref|XP_002445992.1| hypothetical protein SORBIDRAFT_07g029220 [Sorghum bicolor]
gi|241942342|gb|EES15487.1| hypothetical protein SORBIDRAFT_07g029220 [Sorghum bicolor]
Length = 266
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-PNTPTTK--------VFVGNLSDNT 56
M ++E+ A+ LN I+N++ +K++ A RK P P VFVGNL+
Sbjct: 119 MGSEEDALAALTHLNSTILNDRKIKVDFARPRKKQPKQPVVVSNPMEKYIVFVGNLTWRV 178
Query: 57 RAPEVRELFVPYGTVVECDIV---------RNYGFVHIDSPDINK-CIKELNGMMVDGKP 106
R +RELF V+ +++ Y FV S + + I NG ++ G+P
Sbjct: 179 RNRHLRELFASAPGVISAEVIFHTTTPRRSAGYAFVSFSSKETAEAAISAFNGKILMGRP 238
Query: 107 MKVVV 111
+ V++
Sbjct: 239 INVML 243
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 259 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 318
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 319 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 378
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 379 ATKPLYVALA 388
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 164 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 223
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 224 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 283
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 66
E A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 83 EPSERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 140
Query: 67 PYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 141 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 195
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 202 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 261
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 262 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 321
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 322 ATKPLYVALA 331
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 107 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 166
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 167 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 226
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ +N ++ KP++I S++ P+ + +F+ NL + + + F +G +
Sbjct: 31 ALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 88
Query: 72 VECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 89 LSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 138
>gi|145500822|ref|XP_001436394.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403533|emb|CAK68997.1| unnamed protein product [Paramecium tetraurelia]
Length = 204
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 45 TKVFVGNLSDNTRAPE--VRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMM 101
++FV S N E ++++F YG++ + +Y FV + + I LNG
Sbjct: 7 NQLFVAGYSRNKIPDEKGIKDIFKKYGSIKDVAYKGSYSFVTFSAESEAQNAISALNGQQ 66
Query: 102 VDGKPMKV-VVAGFISSILSCLNVIFFIRCGRGGHWSKECP 141
++G+ +KV +V +CG+GGHW++ECP
Sbjct: 67 INGQKLKVDIVDNHKGRRSGPQEKDECFKCGQGGHWARECP 107
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 4 GHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
G + E +T +K GQ+ +K KIE + ++V NL D +R+
Sbjct: 264 GRAQKKVERQTELKHKFGQMKQDK-HKIERVPQDRSVRCKGVNLYVKNLDDGIDDERLRK 322
Query: 64 LFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
F P+GT+ + + +GFV SP + K + E+NG +V KP+ V +A
Sbjct: 323 EFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALA 378
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E EE AI+++NG +N+ + + SR+ T V++ NL ++
Sbjct: 144 HFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K ++E+NG ++GK + V
Sbjct: 204 DERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYV 263
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 66
E+ A+ +N ++ KP++I S++ P+ + +FV NL + + + + F
Sbjct: 63 EDAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFS 120
Query: 67 PYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM ++ KV V F S
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDH--KVFVGRFKS 175
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 168 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 227
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 228 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 287
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 288 ATKPLYVALA 297
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 73 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 132
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 133 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 192
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 57/108 (52%), Gaps = 14/108 (12%)
Query: 19 LNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECD 75
+N ++ KP++I S++ P+ + +F+ NL + + + F +G ++ C
Sbjct: 1 MNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 58
Query: 76 IV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 59 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 104
>gi|356572371|ref|XP_003554342.1| PREDICTED: uncharacterized protein LOC100789337 [Glycine max]
Length = 297
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 22/123 (17%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG LS TR+ ++ +F YG + D+ ++ FV P D + L+G V
Sbjct: 10 NTRLYVGRLSSRTRSRDLERVFSRYGRIRGVDMKNDFAFVEFSDPRDADDARYSLDGRDV 69
Query: 103 DGKPMKVVVA-------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSS 149
+G + V A G C N CG GHW+++C +AG++++
Sbjct: 70 EGSRIIVEFAKGGPRGSRENLGRGLPPGSGRCFN------CGIDGHWARDC-KAGDWKNK 122
Query: 150 GCY 152
CY
Sbjct: 123 -CY 124
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 168 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 227
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 228 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 287
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 288 ATKPLYVALA 297
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 73 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 132
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 133 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 192
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 57/108 (52%), Gaps = 14/108 (12%)
Query: 19 LNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECD 75
+N ++ KP++I S++ P+ + +F+ NL + + + F +G ++ C
Sbjct: 1 MNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 58
Query: 76 IV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 59 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 104
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 175 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 234
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 235 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 294
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 295 ATKPLYVALA 304
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 80 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 139
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 140 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 199
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ +N ++ KP++I S++ P+ + +F+ NL + + + F +G +
Sbjct: 4 ALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 61
Query: 72 VECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 62 LSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 111
>gi|442625619|ref|NP_001259974.1| RNA-binding protein 9, isoform J [Drosophila melanogaster]
gi|440213243|gb|AGB92511.1| RNA-binding protein 9, isoform J [Drosophila melanogaster]
Length = 684
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKC 93
P T + V L E+R LFV +G V C ++R+ YGFV ++ D K
Sbjct: 108 PKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKA 167
Query: 94 IKELNGMMVDGKPMKVVVA 112
I LNG+ + K +KV +A
Sbjct: 168 INALNGLRLQNKTIKVSIA 186
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 18/104 (17%)
Query: 9 DEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
E+ AI LNG + K +K+ A S KG N ++V L N ++ L
Sbjct: 161 QEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGAN-----LYVSGLPKNMTQSDLESL 215
Query: 65 FVPYGTVVE----CD----IVRNYGFVHIDSP-DINKCIKELNG 99
F PYG ++ CD + + GF+ D + ++ IKELNG
Sbjct: 216 FSPYGKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNG 259
>gi|449440159|ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
gi|449521207|ref|XP_004167621.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
Length = 640
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 35/138 (25%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR----------------------KGPNT 42
+ EN ++ + A++ LNG + K + I A + KG N
Sbjct: 239 NFENSDDAKRALETLNGSQLGSKVIYIARAQKKTEREEVLRRHYEEKCKEQVLKYKGSN- 297
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCI 94
V+V N+ D+ E+RE F +GT+ ++R+ +GFV +PD + +
Sbjct: 298 ----VYVKNIDDDVTDEELRERFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAV 353
Query: 95 KELNGMMVDGKPMKVVVA 112
L G M GKP+ + +A
Sbjct: 354 NTLQGCMFHGKPLYLAIA 371
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 10 EEGRTAIKELNGQIVNEKPLKI----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF 65
++ AI+ +N ++N + +++ A +RK + VFV NLSD+ + ++ELF
Sbjct: 66 QDATNAIEVMNHSMLNGRAIRVMWSRRDADARK---SGIGNVFVKNLSDSINSLGLQELF 122
Query: 66 VPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G V+ + + YGFV +S + N I+ LNG V K ++ V F+
Sbjct: 123 KKFGNVLSSKVATSDDGKSKGYGFVQFESEESANAAIESLNGFTVGDK--QIYVGKFV 178
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 285 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 344
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 345 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 404
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 405 ATKPLYVALA 414
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 190 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 249
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 250 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 309
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ +N ++ KP++I S++ P+ + +F+ NL + + + F +G +
Sbjct: 114 ALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 171
Query: 72 VECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 172 LSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 221
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 51/95 (53%), Gaps = 12/95 (12%)
Query: 19 LNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECD 75
+N ++ KP++I S++ P+ + +F+ NL + + + F +G ++ C
Sbjct: 1 MNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 58
Query: 76 IV------RNYGFVHIDSPD-INKCIKELNGMMVD 103
+V + YGFVH ++ + + I+++NGM+++
Sbjct: 59 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 93
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 236 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 295
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 296 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 355
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 356 ATKPLYVALA 365
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVV----ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF P +V E + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 260
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|145518856|ref|XP_001445300.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412744|emb|CAK77903.1| unnamed protein product [Paramecium tetraurelia]
Length = 454
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 16/107 (14%)
Query: 45 TKVFVGNLSDNTRAPE--VRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMM 101
++FV S N E ++++F YG + + +Y FV S + +K LNG
Sbjct: 7 NQLFVAGYSRNKIPDEKGIKDIFKKYGNIKDVAYKGSYSFVTFQSESEAEDALKALNGQT 66
Query: 102 VDGKPMKVVVAGFISSILS-------CLNVIFFIRCGRGGHWSKECP 141
++G+ +KV V S C +CG+GGHW++ECP
Sbjct: 67 INGQKLKVDVVDNRKGRRSGPQENDECF------KCGKGGHWARECP 107
>gi|145512962|ref|XP_001442392.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124409745|emb|CAK74995.1| unnamed protein product [Paramecium tetraurelia]
Length = 196
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMV 102
+ +++VG L R ++++ F YG + + D+ + F+ ++ D + I +++G +
Sbjct: 2 SRQIYVGRLGSKIRREDLQQEFEKYGKIKDIDLRSTHAFIEFEASDEAKQAISQVDGRRI 61
Query: 103 DGKPMKVVVAGFISSIL---SCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKSKSSH 159
G + V S + + +V F CGR GHW+ EC + G+ R + CY K H
Sbjct: 62 GGDRVTVKQRDDRPSGVRGPTTRDVCF--NCGRKGHWANEC-KEGDLRET-CYRCYKKGH 117
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 236 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 295
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 296 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 355
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 356 ATKPLYVALA 365
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVV----ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF P +V E + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 260
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAP 59
E++E + AI++LNG V +K L + + GP+ T +++ NL +
Sbjct: 146 QFESEESSKVAIEKLNGYTVADKELYVGKFVKKSDRILPGPDARYTNLYMKNLDLDVSEA 205
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVVV 111
++E F +G +V I ++ +GFV+ D+P D K ++ +NG + K + V
Sbjct: 206 TLQEKFSSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEAMNGSQLGSKILYVAR 265
Query: 112 A 112
A
Sbjct: 266 A 266
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 35/136 (25%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSR----------------------KGPNTPT 44
+N ++ + A++ +NG + K L + A + KG N
Sbjct: 239 DNPDDAKKAMEAMNGSQLGSKILYVARAQKKAEREQILHHQFEEKQKEQILKYKGSN--- 295
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKE 96
++V N+ D+ E+R+ F GT+ I+R+ +GFV +P + NK +
Sbjct: 296 --IYVKNIDDHVSDEELRDHFSACGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNT 353
Query: 97 LNGMMVDGKPMKVVVA 112
+G M GKP+ V +A
Sbjct: 354 FHGFMYHGKPLYVALA 369
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 13/106 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTTKV---FVGNLSDNTRAPEVRELFVPYGTV 71
AI+ N +N K +++ SR+ P+ + + FV NL ++ ++++F YG +
Sbjct: 69 AIELKNNSTLNGKAMRV--MWSRRDPDARKSAIGNLFVKNLPESIDNAGLQDIFKKYGNI 126
Query: 72 VECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 109
+ +V + YGFV +S + +K I++LNG V K + V
Sbjct: 127 LSSKVVTSEDGKSKGYGFVQFESEESSKVAIEKLNGYTVADKELYV 172
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 12 GRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVPY 68
G A+ ELN ++ KP +I S++ P T VF+ NL + + F +
Sbjct: 96 GERALDELNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAF 153
Query: 69 GTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 154 GNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 207
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 10 EEGRTAIKELNGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNL 52
E + A++E+N + V + L + EAA K ++V NL
Sbjct: 274 ESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNL 333
Query: 53 SDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD 89
+D+ ++RELF PYGT+ ++R+ V +P+
Sbjct: 334 TDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPE 370
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + S+K + T +++ N+
Sbjct: 176 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVE 235
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E R+LF +G + + R+ +GFV+ + + ++E+N V + + V
Sbjct: 236 DEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYV 295
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRVV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDIKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|42407940|dbj|BAD09079.1| nucleic acid-binding protein-like [Oryza sativa Japonica Group]
Length = 131
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 16/124 (12%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR-----KGPN--TPTTKVFVGNLSDNTRA 58
M EE AI+ LN +N + L + A R + P P + +VGNL
Sbjct: 1 MSTIEEADKAIEMLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDD 60
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+ +LF +G VV +V R +GFV + S +++ I L+G +DG+P++V
Sbjct: 61 SRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRV 120
Query: 110 VVAG 113
VA
Sbjct: 121 NVAA 124
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++++NG+ +N +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANQAVEDMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E + AI+++NG ++N++ + + SRK T V++ N D+
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF YG + ++ + +GFV + D N+ ++++NG ++GK
Sbjct: 204 DERLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANQAVEDMNGKDINGK 259
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ D ++ I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|125555900|gb|EAZ01506.1| hypothetical protein OsI_23538 [Oryza sativa Indica Group]
Length = 669
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKV 47
+ E E R A+K LNG+ + + L K E ++K T +
Sbjct: 287 NFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNL 346
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNG 99
++ NL D+ +R+LF +G V C ++ + GFV + D N I ++NG
Sbjct: 347 YLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNG 406
Query: 100 MMVDGKPMKVVVA 112
MV KP+ V VA
Sbjct: 407 KMVGKKPLYVAVA 419
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFV 66
E+ A++ LN +VN KP+++ S + P + VF+ NL N + E+F
Sbjct: 114 EDATRAMENLNFTVVNGKPIRV--MFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFS 171
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFI 115
+GT++ + + YGF+ +S K I LNGM+ +G+ K+ V FI
Sbjct: 172 SFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQ--KIFVGLFI 226
>gi|510240|emb|CAA43420.1| RNA binding protein [Arabidopsis thaliana]
Length = 310
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 22/126 (17%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR-----KGPN--TPTTKVFVGNLS---DN 55
M + +E TA+++ N +N + L + A R + P P +V+VGNL DN
Sbjct: 179 MSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDN 238
Query: 56 TRAPEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKP 106
R + +LF +G VVE +V R +GFV + D ++N+ I L+G ++G+
Sbjct: 239 GR---LEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRA 295
Query: 107 MKVVVA 112
++V VA
Sbjct: 296 IRVNVA 301
>gi|297608990|ref|NP_001062481.2| Os08g0557100 [Oryza sativa Japonica Group]
gi|255678651|dbj|BAF24395.2| Os08g0557100, partial [Oryza sativa Japonica Group]
Length = 194
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 16/124 (12%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR-----KGPN--TPTTKVFVGNLSDNTRA 58
M EE AI+ LN +N + L + A R + P P + +VGNL
Sbjct: 64 MSTIEEADKAIEMLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDD 123
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+ +LF +G VV +V R +GFV + S +++ I L+G +DG+P++V
Sbjct: 124 SRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRV 183
Query: 110 VVAG 113
VA
Sbjct: 184 NVAA 187
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 26 EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY----- 80
E K E + + +++ NL DN +++ELF +G++ C ++ ++
Sbjct: 309 ELKAKFEQERNSRYERLKAANLYLKNLDDNINDVKLKELFSEFGSITSCKVMLDHQGVSK 368
Query: 81 --GFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
GFV +P + ++ +KE+NG M+ KP+ V +A
Sbjct: 369 GSGFVAFSTPEEASRALKEMNGKMIGRKPLYVAIA 403
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAP 59
EN+E AI L+G +N+K + + + +R + T V+V NLS+
Sbjct: 179 QFENEESAERAISFLDGMCLNDKQVYVGFFVRQQERTRTNGSPKFTNVYVKNLSETITNE 238
Query: 60 EVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNG 99
++ ++F YGT+ ++ R +GFV+ PD +++LNG
Sbjct: 239 DLEKVFGVYGTITSALVMKDQTGKSRGFGFVNFQDPDSAAAAVEKLNG 286
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 13/116 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ N ++ A+K LN +N KP++I S + P+ + VF+ NL +
Sbjct: 92 NFSNPQDAANAMKALNFTPLNGKPIRI--MFSHRDPSIRKSGYGNVFIKNLDSTLDNKLL 149
Query: 62 RELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E F +GTV+ C + + YGFV ++ + + I L+GM ++ K + V
Sbjct: 150 HETFAAFGTVLSCKVAVDSNGQSKGYGFVQFENEESAERAISFLDGMCLNDKQVYV 205
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 45 HFETQEAADKAIEKMNGLLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 104
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPM 107
++ELF +G + ++R+ +GFV + D NK + E+NG + GK +
Sbjct: 105 DGNLKELFSQFGKTLSVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAI 162
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A+ E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 140 EKHEDANKAVDEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 199
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV S + K + E+NG +V
Sbjct: 200 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFPSREEATKAVTEMNGRIV 259
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 260 GSKPLYVALA 269
>gi|390604021|gb|EIN13412.1| hypothetical protein PUNSTDRAFT_139962 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 521
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMVD 103
KV++G L ++TR +++ F G +V ++ YGFV ++ + + + + N
Sbjct: 83 NKVYIGGLPEHTRREDLQSCFGKIGNIVNIELKVGYGFVEFETREAAEESVAKYNEGYFM 142
Query: 104 GKPMKVVVA--GFISSILSCLNVIFFIRCGRGGHWSKECPRAG 144
G ++V ++ G + S F +CG+ GHW++ECP +G
Sbjct: 143 GNKIRVEISHGGRTAKYQSEPGACF--KCGQLGHWARECPNSG 183
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 25/128 (19%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNL 52
E A+ ELN + VN + L A R +T K ++V NL
Sbjct: 272 EAAEKAVDELNDKEVNGQKLWAGRAQKRVERDTELRKTIEEKRQEFDAKSAGVNLYVKNL 331
Query: 53 SDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDG 104
D +R F +GT+ C ++ RN+GFV SP+ K + E+NG M+
Sbjct: 332 DDEWDDDRLRAEFDSFGTITSCKVMKDERGVSRNFGFVCYSSPEEATKAVSEMNGKMIGS 391
Query: 105 KPMKVVVA 112
KP+ V +A
Sbjct: 392 KPLYVALA 399
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A++ LN + +P +I S++ P T +F+ NL ++ + +
Sbjct: 90 NAADGERALEHLNYSAIKGRPCRI--MWSQRDPALRKTGQGNIFIKNLDESIDNKALHDT 147
Query: 65 FVPYGTVVECDI-------VRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
F +G ++ C + R + FVH + + + IK ++GMM++ K KV V I
Sbjct: 148 FAAFGEILSCKVGVDEDGKSRGFAFVHYQTGEAADAAIKGVDGMMLNDK--KVFVGHHI 204
>gi|196005557|ref|XP_002112645.1| hypothetical protein TRIADDRAFT_56865 [Trichoplax adhaerens]
gi|190584686|gb|EDV24755.1| hypothetical protein TRIADDRAFT_56865 [Trichoplax adhaerens]
Length = 403
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDSPD-INKCIKELNGMMV 102
++FVGNL+D EVR+LF YG V+EC ++Y FV +D+ + N+ EL+G V
Sbjct: 14 RLFVGNLADCDEN-EVRQLFQQYGQVLECSASKEKSYAFVKMDTTENANRAKLELDGKKV 72
Query: 103 DGKPMKVVVAGFISSI-LSCLNVIFFIRCGRGG 134
+ ++V A S+I +S LN R G
Sbjct: 73 KNRLLRVRFASSNSTIVVSNLNQYVTNELLRQG 105
>gi|169404002|ref|NP_955868.1| serine/arginine-rich splicing factor 4 [Danio rerio]
gi|326676581|ref|XP_003200617.1| PREDICTED: hypothetical protein LOC321872 [Danio rerio]
gi|28461393|gb|AAH46895.1| Zgc:55809 [Danio rerio]
gi|182890456|gb|AAI64410.1| Zgc:55809 protein [Danio rerio]
Length = 366
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVD 103
++V+VG LS R +V F YG ++E D+ YGFV D P D + + +LNG +
Sbjct: 2 SRVYVGKLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKDLC 61
Query: 104 GKPMKVVVAGFI 115
GK +V+V I
Sbjct: 62 GK--RVIVEHTI 71
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 113 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 172
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 173 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 232
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 233 ATKPLYVALA 242
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 18 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 77
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 78 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 137
>gi|50725435|dbj|BAD32907.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
Length = 670
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKV 47
+ E E R A+K LNG+ + + L K E ++K T +
Sbjct: 286 NFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNL 345
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNG 99
++ NL D+ +R+LF +G V C ++ + GFV + D N I ++NG
Sbjct: 346 YLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNG 405
Query: 100 MMVDGKPMKVVVA 112
MV KP+ V VA
Sbjct: 406 KMVGKKPLYVAVA 418
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFV 66
E+ A++ LN +VN KP+++ S + P + VF+ NL N + E+F
Sbjct: 113 EDATRAMENLNFTVVNGKPIRV--MFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFS 170
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFI 115
+GT++ + + YGF+ +S K I LNGM+ +G+ K+ V FI
Sbjct: 171 SFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQ--KIFVGLFI 225
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 15/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + VF+ NL N + + F
Sbjct: 55 DAERALDTMNFDLIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSA 112
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + N I+++NGM+++GK KV V FI
Sbjct: 113 FGNILSCKVAQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNGK--KVYVGRFI 166
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E T+I+++NG ++N K + + RK T V+V N D
Sbjct: 136 HFETEESANTSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGDELN 195
Query: 58 APEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNG 99
++E+F YGT+ ++ R +GFV ++P+ ++ELNG
Sbjct: 196 DETLKEMFEKYGTITSHRVMIKDGKSRGFGFVAFENPESAEHAVQELNG 244
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 35/136 (25%)
Query: 7 ENDEEGRTAIKELNGQIVNE-----------------------KPLKIEAATSRKGPNTP 43
EN E A++ELNG+ + E + LK+E T +G N
Sbjct: 230 ENPESAEHAVQELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVN-- 287
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKE 96
++V NL D+ +R+ F P+GT+ ++ + +GFV + + K + E
Sbjct: 288 ---LYVKNLDDSIDDERLRKEFSPFGTITSAKVMLEEGRSKGFGFVCFSAAEEATKAVTE 344
Query: 97 LNGMMVDGKPMKVVVA 112
+NG +V KP+ V +A
Sbjct: 345 MNGRIVGSKPLYVALA 360
>gi|37681959|gb|AAQ97857.1| TIA1 cytotoxic granule-associated RNA binding protein [Danio rerio]
gi|160773363|gb|AAI55270.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
Length = 342
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Query: 19 LNGQIVNEKPLKIEAAT---SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 75
+NG+ + K +K+ A+ S+K + VFVG+LS +VR F P+G + +
Sbjct: 68 MNGRKILGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDAR 127
Query: 76 IVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKVVVA 112
+VR+ YGF+ I+ D I+++NG + G+ ++ A
Sbjct: 128 VVRDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWA 173
>gi|198473023|ref|XP_002133161.1| GA28809 [Drosophila pseudoobscura pseudoobscura]
gi|198139264|gb|EDY70563.1| GA28809 [Drosophila pseudoobscura pseudoobscura]
Length = 692
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKC 93
P T + V L E+R LFV +G V C ++R+ YGFV ++ D K
Sbjct: 117 PKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKA 176
Query: 94 IKELNGMMVDGKPMKVVVA 112
I LNG+ + K +KV +A
Sbjct: 177 INALNGLRLQNKTIKVSIA 195
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 23/109 (21%)
Query: 9 DEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
E+ AI LNG + K +K+ A S KG N ++V L N ++ L
Sbjct: 170 QEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGAN-----LYVSGLPKNMTQSDLESL 224
Query: 65 FVPYGTVVE----CD---------IVRNYGFVHIDSP-DINKCIKELNG 99
F PYG ++ CD + + GF+ D + ++ IKELNG
Sbjct: 225 FSPYGKIITSRILCDNITDEHAPGLSKGVGFIRFDQRFEADRAIKELNG 273
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 25/131 (19%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFV 49
EN E + A+ ELN + +N K L A ++ K +++
Sbjct: 277 ENHESAKQAVDELNEKEINGKKLYAGRAQTKSEREAELKKSHEEKRIENEAKSAGVNLYI 336
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMM 101
NL D +R F +GT+ ++R+ +GFV SPD K + E+NG M
Sbjct: 337 KNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKM 396
Query: 102 VDGKPMKVVVA 112
+ KP+ V +A
Sbjct: 397 IGTKPLYVALA 407
Score = 37.4 bits (85), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A++ LN ++ + +I S++ P T +F+ NL + + +
Sbjct: 98 NAADGERALEHLNYSLIKGQSCRI--MWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDT 155
Query: 65 FVPYGTVVECDI-------VRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
F +G ++ C + R + FVH + + + IK +NGM+++ K + V
Sbjct: 156 FAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYV 208
>gi|443926079|gb|ELU44821.1| polyadenylate-binding protein [Rhizoctonia solani AG-1 IA]
Length = 593
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 25/131 (19%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFV 49
EN EE A+ E++ + + K L + EAA + ++V
Sbjct: 382 ENHEEAERAVNEMHEKEIKGKVLFVGRAQKKSERQSELARSHEAAKQERQNKYAGVNLYV 441
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMM 101
NL D+ ++R F +GT+ C ++RN +GFV +PD K + E+N M
Sbjct: 442 KNLDDDVDDDKLRAEFEAFGTITSCKVMRNERDISKGFGFVCFSTPDEATKAVTEMNNKM 501
Query: 102 VDGKPMKVVVA 112
+ KP+ V +A
Sbjct: 502 IGTKPLYVSLA 512
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AIK +N ++N+K + + SRK + T ++V NL +
Sbjct: 287 HYETAESAEAAIKAVNRMLLNDKQVFVGHHISRKERQSQIDEARAQFTNIYVKNLDTDIT 346
Query: 58 APEVRELFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNGMMVDGK 105
E R +F +G + + R +GFV+ ++ + + + E++ + GK
Sbjct: 347 EAEFRVMFEEFGNITSAVLQTDNEGKSRGFGFVNYENHEEAERAVNEMHEKEIKGK 402
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 25/131 (19%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFV 49
EN E+ A++EL+ ++ L + E A K +FV
Sbjct: 295 ENHEDAARAVEELHDTEYKDRKLYVCRAQKKHEREEELRKQYEQAKLDKLNKYNGINLFV 354
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMM 101
NL D+ +R+ F YGT+ I+ + +GFV SPD K I E+N M
Sbjct: 355 KNLDDDIDDERLRQEFSIYGTITSAKIMVDDNGKSKGFGFVCFSSPDEATKAITEMNQRM 414
Query: 102 VDGKPMKVVVA 112
V GKP+ V +A
Sbjct: 415 VSGKPLYVALA 425
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 12 GRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPY 68
G A+ ELN ++ KP +I S++ P+ T T VF+ NL + + + F +
Sbjct: 130 GERALDELNYTLIKGKPCRI--MWSQRDPSLRKTGTGNVFIKNLDASIDNKALHDTFTAF 187
Query: 69 GTVVECDIV-------RNYGFVH 84
G+++ C + + YGFVH
Sbjct: 188 GSILSCKVAVDELGNSKGYGFVH 210
>gi|414866997|tpg|DAA45554.1| TPA: ribonucleoprotein A [Zea mays]
Length = 262
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 18/125 (14%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR---------KGPNTPTTKVFVGNLSDNT 56
M + EE A+ + NG +++ + L++ + + P +V+VGNLS
Sbjct: 129 MSSVEEVEVAVDQFNGYVLDGRSLRVNSGPPPPRDRSSPSPQRPRGDANRVYVGNLSWGV 188
Query: 57 RAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPM 107
+ LF G V+E I+ R +GFV S ++ I L+G +DG+ +
Sbjct: 189 DNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDGADLDGRQI 248
Query: 108 KVVVA 112
+V VA
Sbjct: 249 RVTVA 253
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 15/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
E + +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 65 EAERVLDTMNFDLLKGKPIRI--MWSQRDPSLRKSGIGNVFIKNLDKSIDNKAMYDTFSA 122
Query: 68 YGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + + YGFVH +S + NK I+++NGM+++GK KV V FI
Sbjct: 123 FGNILSCKVAIDDDGVSKGYGFVHFESIEAANKAIEKVNGMLLNGK--KVYVGKFI 176
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSDNTR 57
H E+ E AI+++NG ++N K + + E + T V+V N N
Sbjct: 146 HFESIEAANKAIEKVNGMLLNGKKVYVGKFIPRAEREKEIGEKSKKYTNVYVKNFGRNLT 205
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
++ +LF YGT+ C ++ N +GF+ + P+ K + E+N ++G + V
Sbjct: 206 QEQLYDLFKNYGTITSCVVMANPDGTSKGFGFIAFEEPESAEKAVTEMNNYELNGTNLYV 265
>gi|302343499|ref|YP_003808028.1| RNP-1 like RNA-binding protein [Desulfarculus baarsii DSM 2075]
gi|301640112|gb|ADK85434.1| RNP-1 like RNA-binding protein [Desulfarculus baarsii DSM 2075]
Length = 89
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPDINKCIKELN 98
++VGNLS ++ VR LF YG V ++ R +GFV +DS I+ LN
Sbjct: 5 IYVGNLSFHSTEDSVRNLFEQYGAVQSVKVITDQETGRSRGFGFVEMDSDAAENAIRALN 64
Query: 99 GMMVDGKPMKV 109
G +DG+ +KV
Sbjct: 65 GADLDGRALKV 75
>gi|195161932|ref|XP_002021810.1| GL26299 [Drosophila persimilis]
gi|194103610|gb|EDW25653.1| GL26299 [Drosophila persimilis]
Length = 678
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKC 93
P T + V L E+R LFV +G V C ++R+ YGFV ++ D K
Sbjct: 108 PKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKA 167
Query: 94 IKELNGMMVDGKPMKVVVA 112
I LNG+ + K +KV +A
Sbjct: 168 INALNGLRLQNKTIKVSIA 186
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 18/104 (17%)
Query: 9 DEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
E+ AI LNG + K +K+ A S KG N ++V L N ++ L
Sbjct: 161 QEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGAN-----LYVSGLPKNMTQSDLESL 215
Query: 65 FVPYGTVVE----CD----IVRNYGFVHIDSP-DINKCIKELNG 99
F PYG ++ CD + + GF+ D + ++ IKELNG
Sbjct: 216 FSPYGKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNG 259
>gi|149390510|gb|ABR25316.1| splicing factor [Oryza sativa Indica Group]
Length = 209
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 25/126 (19%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMV 102
T+++VG LS TR ++ +LF YG V D+ + FV D+ D ++ L+G
Sbjct: 17 NTRLYVGRLSSRTRTRDLEDLFGRYGRVRYVDMKHEFAFVEFSDARDADEARYNLDGRDF 76
Query: 103 DGKPMKVVVA-------GFISSILS---------CLNVIFFIRCGRGGHWSKECPRAGNF 146
DG M V A G + C N CG GHW+++C +AG++
Sbjct: 77 DGSRMIVEFAKGVPRGPGGSREYMGRGPPPGSGRCFN------CGIDGHWARDC-KAGDW 129
Query: 147 RSSGCY 152
++ CY
Sbjct: 130 KNR-CY 134
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + +++ + T V++ N+ ++
Sbjct: 195 HYETAEAANQAIKSVNGMLLNDKKVFVGHHIAKRDRQSKLEEMKANFTNVYIKNIDESVS 254
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E +LF PYG VV I R+ +GFV+ S + K ++ELN GK + V
Sbjct: 255 DEEFTKLFEPYGEVVSATITRDENGKSRGFGFVNFASHESAAKAVEELNDKEFHGKKLYV 314
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN + +P +I S++ P T VF+ NL + +
Sbjct: 111 NTADGERALEDLNYTSIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 168
Query: 65 FVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C + ++ YGFVH ++ + N+ IK +NGM+++ K KV V I+
Sbjct: 169 FSQFGNILSCKVAQDELGNSKGYGFVHYETAEAANQAIKSVNGMLLNDK--KVFVGHHIA 226
>gi|448123237|ref|XP_004204643.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|448125519|ref|XP_004205201.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|358249834|emb|CCE72900.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|358350182|emb|CCE73461.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
Length = 505
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 64/128 (50%), Gaps = 24/128 (18%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP---------------TTKVFVG 50
E + + A+KE G+ ++ +P+ ++ + S+ P+ P ++ +F+G
Sbjct: 339 FETKSQAQHALKEYQGREIDGRPINLDMSESKPRPSNPRFDRAKQFGDVPSAPSSTLFIG 398
Query: 51 NLSDNTRAPEVRELFVPYGTVVEC------DIVRNYGFVHIDSPDINK---CIKELNGMM 101
NLS N + + ++F YG VV C D + GF +I+ +++ ++ LNG
Sbjct: 399 NLSFNAQRDNLYDIFGEYGRVVSCRMPTHPDTQQPKGFGYIEFSTVDEAKAALEALNGEY 458
Query: 102 VDGKPMKV 109
V+G+P ++
Sbjct: 459 VEGRPCRL 466
>gi|413956150|gb|AFW88799.1| hypothetical protein ZEAMMB73_294352 [Zea mays]
Length = 735
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 15/112 (13%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ +LN +V +KP+++ S + P+ + +FV NLS + ++ELF +G V
Sbjct: 178 ALDKLNHSLVLDKPIRV--MWSNRDPDARRSGVGNIFVKNLSSSVDNASLQELFSKFGDV 235
Query: 72 VECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+ C + +N YGFV S + ++ I LNG + + + K+ VA FI
Sbjct: 236 LSCKVAKNEDGTSRGYGFVQFTSQESADEAIGNLNGSLFNDR--KLHVATFI 285
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E DE AIK +NG ++NEK + + +K + T V+V N++ +
Sbjct: 193 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAPDVT 252
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+ RELF +G V + R+ +GFV+ + + +K + +LNG G+ + V
Sbjct: 253 EDDFRELFEKFGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAVDDLNGKDFHGQDLYV 312
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 13/110 (11%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 67
+G A++ELN ++ +P +I S++ P VF+ NL + + F
Sbjct: 112 DGEKALEELNYTLIKGRPCRI--MWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAA 169
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+G ++ C + ++ YGFVH ++ + ++ IK +NGM+++ K + V
Sbjct: 170 FGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV 219
>gi|307176221|gb|EFN65860.1| Sex-lethal-like protein [Camponotus floridanus]
Length = 272
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 69
E+ TAI LNG V K LK+ A G T ++V NL N ++ E+F YG
Sbjct: 42 EDAATAISTLNGLQVQNKRLKVSFARP-SGEEIKETNLYVTNLPRNITESQIDEIFSKYG 100
Query: 70 TVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDG--KPMKVVVA 112
+V+ +I+ R FV D + + I +L+G + +G +P+ V +A
Sbjct: 101 NIVQKNILKDKLTGLPRGVAFVRFDKREEAQEAIAQLHGTIPEGGSEPLSVKIA 154
>gi|91086169|ref|XP_970456.1| PREDICTED: similar to TIA-1 homolog [Tribolium castaneum]
gi|270010230|gb|EFA06678.1| hypothetical protein TcasGA2_TC009608 [Tribolium castaneum]
Length = 364
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATS-RKGPNTPTTK---VFVGNLSDNTRAPEVRE 63
N + TA+ +N ++ +K +K+ ATS P T+ +FVG+LS +RE
Sbjct: 55 NHQSASTALAAMNKRLFLDKEMKVNWATSPGNQPKQDTSNHHHIFVGDLSPEIETETLRE 114
Query: 64 LFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
F P+G + C IVR+ Y FV + + I+ +NG + + ++
Sbjct: 115 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIQAMNGQWLGSRSIRT 169
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 16/121 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E DE AIK +NG ++NEK + + +K + T ++V N++
Sbjct: 195 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVT 254
Query: 58 APEVRELFVPYGTVVECDIVRN--------YGFVHIDS-PDINKCIKELNGMMVDGKPMK 108
E R LF YG V + R+ +GFV+ S D +K ++ELN G+ +
Sbjct: 255 DDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLY 314
Query: 109 V 109
V
Sbjct: 315 V 315
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 15/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 67
+G A++ELN ++ +P +I S++ P T VF+ NL + + F
Sbjct: 114 DGEKALEELNYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAA 171
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + ++ IK +NGM+++ K KV V I
Sbjct: 172 FGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEK--KVYVGHHI 225
>gi|226492142|ref|NP_001148607.1| ribonucleoprotein A precursor [Zea mays]
gi|195620768|gb|ACG32214.1| ribonucleoprotein A [Zea mays]
Length = 264
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 18/125 (14%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR---------KGPNTPTTKVFVGNLSDNT 56
M + EE A+ + NG +++ + L++ + + P +V+VGNLS
Sbjct: 131 MSSVEEVEVAVDQFNGYVLDGRSLRVNSGPPPPRDRSSPSPQRPRGDANRVYVGNLSWGV 190
Query: 57 RAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPM 107
+ LF G V+E I+ R +GFV S ++ I L+G +DG+ +
Sbjct: 191 DNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDGADLDGRQI 250
Query: 108 KVVVA 112
+V VA
Sbjct: 251 RVTVA 255
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFV 49
E E+ + A+ E+NG+ N K + + A + T + ++V
Sbjct: 544 EKHEDAQRAVDEMNGKEFNGKRIYVGRAQKKGERQTELKRHFEQVKQERSSRYQGVNLYV 603
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D+ +R+ F P+GT+ ++ R +GFV +P + K + E+NG +V
Sbjct: 604 KNLDDSIDDERLRKAFSPFGTITSAKVMMEGGHSRGFGFVCFSAPEEAAKAVSEMNGKLV 663
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 664 ATKPLYVALA 673
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 58/111 (52%), Gaps = 14/111 (12%)
Query: 16 IKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVV 72
++ +N ++ KP++I S++ P+ + +F+ NL + + + F +G ++
Sbjct: 374 LETMNLDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLEKSIDNKALYKTFSAFGNIL 431
Query: 73 ECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
C ++ + YGFVH ++ +K I+++NG+ ++ +KV V F S
Sbjct: 432 SCKVISDENGSKGYGFVHFENQQAADKAIEKMNGVRLNN--LKVYVGRFKS 480
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 19/116 (16%)
Query: 10 EEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
E G+ AI+ELN +N +P +I + A +KG + +F+ NL + E
Sbjct: 102 EAGKKAIQELNYAEINGRPCRIMWSERDPAIRKKG----SGNIFIKNLHPAIDNKALHET 157
Query: 65 FVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVVVA 112
F +G V+ C + R +GFVH + D I+ +NGM+++G ++V VA
Sbjct: 158 FSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNG--LEVYVA 211
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELN 98
+F+ NL D+ +++E F PYGT+ ++R+ +GFV SP + K + E N
Sbjct: 336 LFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKN 395
Query: 99 GMMVDGKPMKVVVA 112
+V GKP+ V +A
Sbjct: 396 QQIVAGKPLYVAIA 409
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-------PNTPTTKVFVGNLSDNTR 57
H + + + + AI+ +NG ++N + + +K T ++V N+ T
Sbjct: 184 HFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETT 243
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVH-IDSPDINKCIKELNG 99
E +LF YG +V + ++ +GFV+ +D K ++ELNG
Sbjct: 244 DEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNG 293
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 59
E +E + AI +LNG ++N+K P + N V+V NLS++T
Sbjct: 173 QFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNPKFNNVYVKNLSESTTED 232
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGK 105
++E+F +G + ++R +GFV+ ++P D + +++LNG D K
Sbjct: 233 NLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDK 286
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKV 47
+ EN ++ A+++LNG+ ++K K E T +
Sbjct: 264 NFENPDDAARAVEDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNL 323
Query: 48 FVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNY-------GFVHIDSP-DINKCIKELN 98
++ NL D+ E ++E+F +GT+ C ++R+ GFV S D ++ + +N
Sbjct: 324 YLKNLDDSIDDDEKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMN 383
Query: 99 GMMVDGKPMKVVVA 112
G M+ KP+ V +A
Sbjct: 384 GKMIGSKPLYVALA 397
>gi|50286801|ref|XP_445830.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525136|emb|CAG58749.1| unnamed protein product [Candida glabrata]
Length = 425
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 62/127 (48%), Gaps = 23/127 (18%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG--------------PNTPTTKVFVGN 51
E+ A+KE++G+ ++ +P+ ++ +TS+ P+ P+ +F+GN
Sbjct: 224 FEDKSYAEKAVKEMHGKEIDGRPINVDMSTSKPTVNPREDRQKRFGDIPSEPSDTLFLGN 283
Query: 52 LSDNTRAPEVRELFVPYGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMV 102
LS N + E+F +G ++ E + + +G+V S D K ++ L G +
Sbjct: 284 LSFNADRDNIYEIFGKFGEIISVRIPTHPETEQPKGFGYVQYTSIDDAKKALEALQGEYI 343
Query: 103 DGKPMKV 109
D +P+++
Sbjct: 344 DNRPVRL 350
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 25/131 (19%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFV 49
E+ E R A+ ELN + VN K L A ++ K +++
Sbjct: 277 EHHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYI 336
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMM 101
NL D +R F +GT+ ++R+ +GFV SPD K + E+NG M
Sbjct: 337 KNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKM 396
Query: 102 VDGKPMKVVVA 112
+ KP+ V +A
Sbjct: 397 IGTKPLYVALA 407
Score = 37.7 bits (86), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 15/118 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSDNTR 57
H E AIK +NG ++N+K + K E + + T V++ N+
Sbjct: 182 HYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVT 241
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPM 107
E +L P+G + + R+ +GFV+ + + K + ELN V+GK +
Sbjct: 242 DAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYEHHESARKAVDELNEKEVNGKKL 299
Score = 37.7 bits (86), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A++ LN ++ + +I S++ P T +F+ NL + + +
Sbjct: 98 NAADGERALEHLNYSLIKGQSCRI--MWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDT 155
Query: 65 FVPYGTVVECDI-------VRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
F +G ++ C + R + FVH + + + IK +NGM+++ K + V
Sbjct: 156 FAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYV 208
>gi|225717806|gb|ACO14749.1| Serine-arginine protein 55 [Caligus clemensi]
Length = 189
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVD 103
++V+VGNL +N R +V + F YG + E I YGFV D P D + + +++G
Sbjct: 5 SRVYVGNLPENVRERDVEKFFKEYGRIREVVIKSGYGFVEFDDPRDADDVVNDMDGKEFQ 64
Query: 104 GKPMKVVVA 112
G ++V +A
Sbjct: 65 GGRVRVEMA 73
>gi|444726222|gb|ELW66761.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 568
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 32/143 (22%)
Query: 2 SSGH--------MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK------- 46
SSGH E EE + A+ +NG+ V+ + L + A R +
Sbjct: 201 SSGHSRGFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYVGRAQKRLERQNELKRRFEQMKQ 260
Query: 47 ----------VFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-D 89
++V NL D+ ++R+ F PYG + ++ + +GFV SP +
Sbjct: 261 DRLNRYQGVNLYVKNLDDSINDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEE 320
Query: 90 INKCIKELNGMMVDGKPMKVVVA 112
K + E+NG +V KP+ V +A
Sbjct: 321 ATKAVTEMNGRIVGTKPLYVALA 343
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +++ +P++I S++ P + +F+ NL D+ + + F
Sbjct: 39 DAERALDTMNFEVIKGQPIRI--MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFST 96
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V R +GFVH ++ D + I +NGM+++ + KV V F S
Sbjct: 97 FGNILSCKVVCDEHGSRGFGFVHFETHDAAQRAISTMNGMLLNDR--KVFVGHFKS 150
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E + + AI +NG ++N++ + + SR+ T ++V NL +
Sbjct: 119 HFETHDAAQRAISTMNGMLLNDRKVFVGHFKSRREREAELGARVMEFTNIYVKNLQVDVD 178
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G ++ ++R+ +GFV+ + + K + +NG V G+ + V
Sbjct: 179 ERGLQDLFSQFGKMLSVKVMRDSSGHSRGFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYV 238
>gi|195576197|ref|XP_002077963.1| GD23195 [Drosophila simulans]
gi|194189972|gb|EDX03548.1| GD23195 [Drosophila simulans]
Length = 464
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKC 93
P T + V L E+R LFV +G V C ++R+ YGFV ++ D K
Sbjct: 313 PKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKA 372
Query: 94 IKELNGMMVDGKPMKVVVAGFISSILSCLNV 124
I LNG+ + K +KV +A S + N+
Sbjct: 373 INALNGLRLQNKTIKVSIARPSSESIKGANL 403
>gi|452820609|gb|EME27649.1| poly(A) binding / translation initiation factor [Galdieria
sulphuraria]
Length = 784
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 14/119 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-----TKVFVGNLSDNTRAP 59
H EN E+ TAI ++NG ++N+K + + SR+ T V+ NL +
Sbjct: 214 HFENPEDAETAINKVNGMLLNDKQVYVGYFKSRQEREASEETHIFTNVYTKNLIPSMCTE 273
Query: 60 E-VRELFVPYGTVV-------ECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E +RELF YG + E ++ + + FV+ P+ K ++ELNG +GK + V
Sbjct: 274 EKIRELFSLYGEITSVYVPVDENEVPKGFAFVNFAKPECAAKAVEELNGRDFEGKSLYV 332
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 25/123 (20%)
Query: 15 AIKELNGQIVNEKPLKI---------EAATSRKGPNTPT--------TKVFVGNLSDNTR 57
A++ELNG+ K L + EA RK N ++V NL D+
Sbjct: 316 AVEELNGRDFEGKSLYVGRAQKKAEREAELRRKAENKRAEILKKYQGVNLYVRNLPDDMD 375
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+R+ F +GT+ C ++R+ +GFV +P+ K + E+NG M+ KP+ V
Sbjct: 376 EEGLRKEFSNFGTLTSCRVMRDDKGVSRGFGFVCFSTPEEATKAVTEMNGKMMGKKPLYV 435
Query: 110 VVA 112
+A
Sbjct: 436 CLA 438
>gi|365921618|ref|ZP_09445884.1| hypothetical protein HMPREF9080_01930 [Cardiobacterium valvarum
F0432]
gi|364575809|gb|EHM53177.1| hypothetical protein HMPREF9080_01930 [Cardiobacterium valvarum
F0432]
Length = 100
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 9/72 (12%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKEL 97
++VGNLS E+R+LF PYG+V I+ + +GFV + D+ + + I+ L
Sbjct: 4 IYVGNLSYRATEQELRDLFAPYGSVSNASIITERGSGRSKGFGFVEMHDNSEGLRAIEAL 63
Query: 98 NGMMVDGKPMKV 109
NG V G+P+K+
Sbjct: 64 NGKEVGGRPLKI 75
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKE 96
+ +++ NL D+ +++E+F YG V C ++ R +GFV SP + ++ + E
Sbjct: 341 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSSPEEASRALSE 400
Query: 97 LNGMMVDGKPMKVVVAGFISSILSCLNVIF 126
+NG M+ KP+ V A + L +F
Sbjct: 401 MNGKMIGRKPLYVAFAQRKEERRAHLQTLF 430
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVREL 64
N E+ A+ LN + ++P++I S + P+T + VF+ NL + + E
Sbjct: 107 NPEDASRAMDSLNYAPIRDRPIRI--MLSNRDPSTRLSGKGNVFIKNLDPSIDNKALYET 164
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFI 115
F +GT++ C + + YGFV + + + I +LNGM+++ K +V V F+
Sbjct: 165 FSAFGTILSCKVAMDAVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDK--QVFVGHFV 221
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSDNTR 57
E +E + AI +LNG ++N+K + + + + S G T V+V NL
Sbjct: 191 QFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRSRSESGAVPRFTNVYVKNLPKEIT 250
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGM 100
E+++ F YG + ++ R++GFV+ +SP+ ++++NG+
Sbjct: 251 DDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFESPEAAAVAVEKMNGI 301
>gi|195342135|ref|XP_002037657.1| GM18380 [Drosophila sechellia]
gi|194132507|gb|EDW54075.1| GM18380 [Drosophila sechellia]
Length = 650
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKC 93
P T + V L E+R LFV +G V C ++R+ YGFV ++ D K
Sbjct: 314 PKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKA 373
Query: 94 IKELNGMMVDGKPMKVVVA 112
I LNG+ + K +KV +A
Sbjct: 374 INALNGLRLQNKTIKVSIA 392
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 23/109 (21%)
Query: 9 DEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
E+ AI LNG + K +K+ A S KG N ++V L N ++ L
Sbjct: 367 QEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGAN-----LYVSGLPKNMTQSDLESL 421
Query: 65 FVPYGTVVE----CD---------IVRNYGFVHIDSP-DINKCIKELNG 99
F PYG ++ CD + + GF+ D + ++ IKELNG
Sbjct: 422 FSPYGKIITSRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNG 470
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAP 59
E +E + AI +LNG ++N+K P + N V+V NLS++T
Sbjct: 173 QFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNPKFNNVYVKNLSESTTED 232
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGK 105
++E+F +G + ++R +GFV+ ++P D + +++LNG D K
Sbjct: 233 NLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDK 286
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKV 47
+ EN ++ A+++LNG+ ++K K E T +
Sbjct: 264 NFENPDDAARAVEDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNL 323
Query: 48 FVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNY-------GFVHIDSP-DINKCIKELN 98
++ NL D+ E ++E+F +GT+ C ++R+ GFV S D ++ + +N
Sbjct: 324 YLKNLDDSIDDDEKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMN 383
Query: 99 GMMVDGKPMKVVVA 112
G M+ KP+ V +A
Sbjct: 384 GKMIGSKPLYVALA 397
>gi|7322081|gb|AAB25519.2| RRM9 [Drosophila melanogaster]
Length = 444
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKC 93
P T + V L E+R LFV +G V C ++R+ YGFV ++ D K
Sbjct: 108 PKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKA 167
Query: 94 IKELNGMMVDGKPMKVVVA 112
I LNG+ + K +KV +A
Sbjct: 168 INALNGLRLQNKTIKVSIA 186
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 23/109 (21%)
Query: 9 DEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
E+ AI LNG + K +K+ A S KG N ++V L N ++ L
Sbjct: 161 QEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGAN-----LYVSGLPKNMTQSDLESL 215
Query: 65 FVPYGTVVE----CD---------IVRNYGFVHIDSP-DINKCIKELNG 99
F PYG ++ CD + + GF+ D + ++ IKELNG
Sbjct: 216 FSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264
>gi|19549690|ref|NP_599125.1| RNA-binding protein 9, isoform E [Drosophila melanogaster]
gi|19549692|ref|NP_599126.1| RNA-binding protein 9, isoform F [Drosophila melanogaster]
gi|62471589|ref|NP_001014462.1| RNA-binding protein 9, isoform G [Drosophila melanogaster]
gi|221330652|ref|NP_476936.3| RNA-binding protein 9, isoform H [Drosophila melanogaster]
gi|158227|gb|AAC13646.1| RNA-binding protein [Drosophila melanogaster]
gi|22945352|gb|AAN10402.1| RNA-binding protein 9, isoform E [Drosophila melanogaster]
gi|22945353|gb|AAN10403.1| RNA-binding protein 9, isoform F [Drosophila melanogaster]
gi|40714603|gb|AAR88559.1| GH26440p [Drosophila melanogaster]
gi|61678275|gb|AAX52651.1| RNA-binding protein 9, isoform G [Drosophila melanogaster]
gi|220901921|gb|AAN10401.3| RNA-binding protein 9, isoform H [Drosophila melanogaster]
gi|220951536|gb|ACL88311.1| Rbp9-PE [synthetic construct]
Length = 439
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKC 93
P T + V L E+R LFV +G V C ++R+ YGFV ++ D K
Sbjct: 108 PKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKA 167
Query: 94 IKELNGMMVDGKPMKVVVA 112
I LNG+ + K +KV +A
Sbjct: 168 INALNGLRLQNKTIKVSIA 186
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 18/104 (17%)
Query: 9 DEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
E+ AI LNG + K +K+ A S KG N ++V L N ++ L
Sbjct: 161 QEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGAN-----LYVSGLPKNMTQSDLESL 215
Query: 65 FVPYGTVVE----CD----IVRNYGFVHIDSP-DINKCIKELNG 99
F PYG ++ CD + + GF+ D + ++ IKELNG
Sbjct: 216 FSPYGKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNG 259
>gi|302811197|ref|XP_002987288.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
gi|302815025|ref|XP_002989195.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300143095|gb|EFJ09789.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300144923|gb|EFJ11603.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
Length = 567
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 13/113 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVREL 64
N ++ AI+ELN VN KP++I S + P+ + + +FV NL + + +L
Sbjct: 65 NTQDASRAIEELNFMPVNGKPVRI--MFSYRDPSIRKSGSGNLFVKNLDKSIDNKALHDL 122
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
F PYG ++ C I + +GFV D+ D + I+++NG + K + V
Sbjct: 123 FSPYGKILSCKIALDVSNVSKGHGFVQFDTEDAAHTAIEKINGTTLHDKQLFV 175
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 67/127 (52%), Gaps = 15/127 (11%)
Query: 1 MSSGH----MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK---VFVGNLS 53
+S GH + ++ TAI+++NG +++K L + R+ + P +K VFV NLS
Sbjct: 141 VSKGHGFVQFDTEDAAHTAIEKINGTTLHDKQLFVGPFVRRQERDPPASKFNNVFVKNLS 200
Query: 54 DNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGK 105
+ T ++++LF +G + +++ +GFV+ ++P D K +++L+G K
Sbjct: 201 EITTDEDLQKLFGVFGPISSAVVMKEVDGKSKCFGFVNFENPEDAVKAVEDLHGTTFQDK 260
Query: 106 PMKVVVA 112
+ V A
Sbjct: 261 ELYVSRA 267
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 24/132 (18%)
Query: 5 HMENDEEGRTAIKELNG-------------QIVNEKPLKIEAATSRKGPNTPT---TKVF 48
+ EN E+ A+++L+G Q NE+ +++A + +T T ++
Sbjct: 238 NFENPEDAVKAVEDLHGTTFQDKELYVSRAQKKNEREAELKAKFEHERKDTEDKSPTNLY 297
Query: 49 VGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDIN-KCIKELNGM 100
+ NL D +++++F +G V C ++R+ GFV + D + + ++NG
Sbjct: 298 LKNLDDGIDDEKLKDMFSAFGNVTSCKVMRDPLGHSKGSGFVAFSTSDAALRAVAQMNGK 357
Query: 101 MVDGKPMKVVVA 112
M+ KP+ V +A
Sbjct: 358 MIGSKPLYVAMA 369
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 48/84 (57%), Gaps = 11/84 (13%)
Query: 40 PNTP--TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHID-SP 88
P +P +T ++VG+L + ++ ++F G V+ + R+ Y +V+ + +
Sbjct: 8 PRSPFASTALYVGDLDPSVNEAQIFDIFKQIGNVMSVRLCRDMVTKRSLGYAYVNYNNTQ 67
Query: 89 DINKCIKELNGMMVDGKPMKVVVA 112
D ++ I+ELN M V+GKP++++ +
Sbjct: 68 DASRAIEELNFMPVNGKPVRIMFS 91
>gi|19549688|ref|NP_599124.1| RNA-binding protein 9, isoform B [Drosophila melanogaster]
gi|19549694|ref|NP_599127.1| RNA-binding protein 9, isoform C [Drosophila melanogaster]
gi|221330653|ref|NP_476937.3| RNA-binding protein 9, isoform I [Drosophila melanogaster]
gi|158226|gb|AAC13645.1| RNA-binding protein [Drosophila melanogaster]
gi|22945349|gb|AAF51177.2| RNA-binding protein 9, isoform B [Drosophila melanogaster]
gi|22945350|gb|AAF51178.2| RNA-binding protein 9, isoform C [Drosophila melanogaster]
gi|220901922|gb|AAF51179.4| RNA-binding protein 9, isoform I [Drosophila melanogaster]
Length = 444
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKC 93
P T + V L E+R LFV +G V C ++R+ YGFV ++ D K
Sbjct: 108 PKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKA 167
Query: 94 IKELNGMMVDGKPMKVVVA 112
I LNG+ + K +KV +A
Sbjct: 168 INALNGLRLQNKTIKVSIA 186
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 23/109 (21%)
Query: 9 DEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
E+ AI LNG + K +K+ A S KG N ++V L N ++ L
Sbjct: 161 QEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGAN-----LYVSGLPKNMTQSDLESL 215
Query: 65 FVPYGTVVE----CD---------IVRNYGFVHIDSP-DINKCIKELNG 99
F PYG ++ CD + + GF+ D + ++ IKELNG
Sbjct: 216 FSPYGKIITSRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264
>gi|241671135|ref|XP_002399999.1| alternative splicing factor SRp20/9G8, putative [Ixodes scapularis]
gi|215506237|gb|EEC15731.1| alternative splicing factor SRp20/9G8, putative [Ixodes scapularis]
Length = 122
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN----YGFV-HIDSPDINKCIKELNGM 100
++F+G L R +V ++F YG ++ CD+ Y FV + D D +K NG
Sbjct: 6 QLFIGRLPLECRERDVEQVFERYGRLLRCDVKYGTGMAYAFVDYEDHRDAEDAVKYENGR 65
Query: 101 MVDGKPMKVVVAGFISSILSCLNVIFF---IRCGRGGHWSKECP 141
+ G+ + V A S V F RC R GHW+++CP
Sbjct: 66 EIRGQSVVVEWARGPSFRPPAAKVSSFDECYRCRRTGHWARDCP 109
>gi|410924257|ref|XP_003975598.1| PREDICTED: tRNA selenocysteine 1-associated protein 1-like
[Takifugu rubripes]
Length = 340
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 19/147 (12%)
Query: 16 IKELNGQIVNE----KPLKIEAATSRKGPNT-PTTKVFVGNLSDNTRAPEVRELFVPYGT 70
++ LNG++V + K+ AT K P P VFVG+L+ + + +++++F Y +
Sbjct: 65 VQRLNGKLVPGSNPPRKFKLNYATYGKRPEAGPEFSVFVGDLASDVQDFQLQQVFKNYPS 124
Query: 71 VVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCL 122
+V R YGFV + + K I+E G M+ GKP+++ VA S +S
Sbjct: 125 CKGAKVVTDQYGYSRGYGFVKFGEESEQKKAIEECQGTMLSGKPLRLSVAVAKSQKISSY 184
Query: 123 NVIFFIRCGRGGHWSKECPRAGNFRSS 149
+ G+G ++S N+ S
Sbjct: 185 ------QGGQGQNYSSYNQSQSNYYGS 205
>gi|326513006|dbj|BAK03410.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326525779|dbj|BAJ88936.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 436
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 24/123 (19%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKG---------PNTPT-----------TKVFV 49
E+ R A+ E+NG + +P++I A +RK PNT T T +FV
Sbjct: 235 EQAR-AMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFV 293
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFV-HIDSPDINKCIKELNGMMVDGKP 106
G L N ++++F PYG VV I + GFV + + P + ++ L G +V G+
Sbjct: 294 GGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEQALQLLQGTLVGGQN 353
Query: 107 MKV 109
+++
Sbjct: 354 VRL 356
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 16 IKELNGQIVNEKPLKIE---AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELF-VPYGTV 71
++ NGQ++ L A+ K +TP +FVG+L+ + ++E F V Y +V
Sbjct: 149 LQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSV 208
Query: 72 VECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 109
+V + YGFV P + + + E+NGM +PM++
Sbjct: 209 KGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 255
>gi|341893520|gb|EGT49455.1| CBN-TIAR-2 protein [Caenorhabditis brenneri]
Length = 420
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 17/115 (14%)
Query: 15 AIKELNGQIVNEKPLKIEAA--------TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFV 66
A++ +NG+ + ++ L++ A +SRK + VFVG+LS + +++E F+
Sbjct: 94 ALQSMNGRQLLDRELRVNWAVEPNQPGDSSRKMDYSRHFHVFVGDLSSEIDSTKLKEAFL 153
Query: 67 PYGTVVECDIVRN--------YGFV-HIDSPDINKCIKELNGMMVDGKPMKVVVA 112
P+G V E I+R+ YGFV + D + I+++NG + + ++ A
Sbjct: 154 PFGEVSEAKIIRDTTTNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRTNWA 208
>gi|326510421|dbj|BAJ87427.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510771|dbj|BAJ91733.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 278
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 27/130 (20%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTP--------------TTKVFVGN 51
EE A+++ NG +PL++ + P TP K++VGN
Sbjct: 139 EEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMGGGGGGGSFDSANKLYVGN 198
Query: 52 LSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCIKELNGMMV 102
LS + LF G V++ ++ R +GFV S D +N I L+G+ +
Sbjct: 199 LSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDL 258
Query: 103 DGKPMKVVVA 112
DG+ ++V VA
Sbjct: 259 DGRQIRVTVA 268
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 24/149 (16%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFV 49
E E+ + A+ E+NG+ +N K + + A + T + ++V
Sbjct: 239 ERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVAGFISSILSCLNVIFFIRCG 131
KP+ V +A + L + R
Sbjct: 359 ATKPLYVALAQRKEERQAHLTSQYMQRMA 387
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++E+F YG + ++ + +GFV + D + + E+NG ++GK + V
Sbjct: 204 DEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 263
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGRPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|195470919|ref|XP_002087754.1| GE18193 [Drosophila yakuba]
gi|194173855|gb|EDW87466.1| GE18193 [Drosophila yakuba]
Length = 446
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKC 93
P T + V L E+R LFV +G V C ++R+ YGFV ++ D K
Sbjct: 110 PKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKA 169
Query: 94 IKELNGMMVDGKPMKVVVA 112
I LNG+ + K +KV +A
Sbjct: 170 INALNGLRLQNKTIKVSIA 188
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 23/109 (21%)
Query: 9 DEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
E+ AI LNG + K +K+ A S KG N ++V L N ++ L
Sbjct: 163 QEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGAN-----LYVSGLPKNMTQSDLESL 217
Query: 65 FVPYGTVVE----CD---------IVRNYGFVHIDSP-DINKCIKELNG 99
F PYG ++ CD + + GF+ D + ++ IKELNG
Sbjct: 218 FSPYGKIITSRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNG 266
>gi|124248380|gb|ABM92810.1| IP15810p [Drosophila melanogaster]
Length = 647
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKC 93
P T + V L E+R LFV +G V C ++R+ YGFV ++ D K
Sbjct: 311 PKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKA 370
Query: 94 IKELNGMMVDGKPMKVVVA 112
I LNG+ + K +KV +A
Sbjct: 371 INALNGLRLQNKTIKVSIA 389
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 23/109 (21%)
Query: 9 DEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
E+ AI LNG + K +K+ A S KG N ++V L N ++ L
Sbjct: 364 QEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGAN-----LYVSGLPKNMTQSDLESL 418
Query: 65 FVPYGTVVE----CD---------IVRNYGFVHIDSP-DINKCIKELNG 99
F PYG ++ CD + + GF+ D + ++ IKELNG
Sbjct: 419 FSPYGKIITSRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNG 467
>gi|326507746|dbj|BAJ86616.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 192
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 16/121 (13%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG----PNTPTTK--VFVGNLSDNTRAP 59
M ++EE +A+K LN +N++ +K++ A +K P+ P K VFVGNL+ R+
Sbjct: 42 MGSEEEALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSR 101
Query: 60 EVRELFVPYGTVVECDIV---------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+RELF V +++ YGFV S + I NG + G+ + V
Sbjct: 102 HLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINV 161
Query: 110 V 110
+
Sbjct: 162 M 162
>gi|194855197|ref|XP_001968493.1| GG24901 [Drosophila erecta]
gi|190660360|gb|EDV57552.1| GG24901 [Drosophila erecta]
Length = 446
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKC 93
P T + V L E+R LFV +G V C ++R+ YGFV ++ D K
Sbjct: 110 PKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKA 169
Query: 94 IKELNGMMVDGKPMKVVVA 112
I LNG+ + K +KV +A
Sbjct: 170 INALNGLRLQNKTIKVSIA 188
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 23/109 (21%)
Query: 9 DEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
E+ AI LNG + K +K+ A S KG N ++V L N ++ L
Sbjct: 163 QEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGAN-----LYVSGLPKNMTQSDLESL 217
Query: 65 FVPYGTVVE----CD---------IVRNYGFVHIDSP-DINKCIKELNG 99
F PYG ++ CD + + GF+ D + ++ IKELNG
Sbjct: 218 FSPYGKIITSRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNG 266
>gi|168274276|dbj|BAG09558.1| chloroplast RNA binding protein [Mesembryanthemum crystallinum]
Length = 306
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRA 58
M EE A++ LNG +N + L + A R + P P+ +V+VGNL +
Sbjct: 176 MSTVEEAEKAVEMLNGFDMNGRLLTVNKAAPRGSRPERPPREFEPSCRVYVGNLPWDVDN 235
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+ ++F +G V+ +V R +GFV + S ++N I L+G +DG+ ++V
Sbjct: 236 ARLEQVFSEHGKVLSARVVSDRETGRSRGFGFVSMASESEMNDAIAALDGQTLDGRAIRV 295
Query: 110 VVA 112
VA
Sbjct: 296 NVA 298
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 24/127 (18%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFVGNL 52
E+ + A+ E+NG+ +N + + + A + T + ++V NL
Sbjct: 233 EDAQRAVDEMNGKELNGRRIYVGRAQKKGERQTELKRHFEQIKQDRVTRYQGVNLYVKNL 292
Query: 53 SDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGK 105
D +R F P+GT+ ++ R +GFV +PD K + E+NG +V K
Sbjct: 293 DDTIDDERLRTEFSPFGTITSAKVMMEGGHSRGFGFVCFSAPDEAAKAVTEMNGKLVTSK 352
Query: 106 PMKVVVA 112
P+ V +A
Sbjct: 353 PLYVALA 359
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 14/122 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ + + + ++ +N ++ KP++I S++ P+ + +FV NL + +
Sbjct: 49 NFQQSSDAQRVLETMNLDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLEKSIDNRAL 106
Query: 62 RELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGF 114
+ F +G ++ C +V + YGFVH ++ + K I+++NG+++ K +KV V F
Sbjct: 107 FDAFSGFGNILSCKVVSDENGSKGYGFVHFETQESAEKAIEKMNGIVL--KSLKVFVGHF 164
Query: 115 IS 116
S
Sbjct: 165 KS 166
>gi|194758473|ref|XP_001961486.1| GF14992 [Drosophila ananassae]
gi|190615183|gb|EDV30707.1| GF14992 [Drosophila ananassae]
Length = 660
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKC 93
P T + V L E+R LFV +G V C ++R+ YGFV ++ D K
Sbjct: 96 PKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKA 155
Query: 94 IKELNGMMVDGKPMKVVVA 112
I LNG+ + K +KV +A
Sbjct: 156 INALNGLRLQNKTIKVSIA 174
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 23/109 (21%)
Query: 9 DEEGRTAIKELNGQIVNEKPLKIEAA----TSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
E+ AI LNG + K +K+ A S KG N ++V L N ++ L
Sbjct: 149 QEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGAN-----LYVSGLPKNMTQSDLESL 203
Query: 65 FVPYGTVVE----CD---------IVRNYGFVHIDSP-DINKCIKELNG 99
F PYG ++ CD + + GF+ D + ++ IKELNG
Sbjct: 204 FSPYGKIITSRILCDNITDEHAQGLSKGVGFIRFDQRFEADRAIKELNG 252
>gi|115434616|ref|NP_001042066.1| Os01g0155600 [Oryza sativa Japonica Group]
gi|54290784|dbj|BAD61423.1| putative splicing factor [Oryza sativa Japonica Group]
gi|113531597|dbj|BAF03980.1| Os01g0155600 [Oryza sativa Japonica Group]
gi|125524487|gb|EAY72601.1| hypothetical protein OsI_00466 [Oryza sativa Indica Group]
gi|215765664|dbj|BAG87361.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 324
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 25/126 (19%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMV 102
T+++VG LS TR ++ +LF YG V D+ + FV D+ D ++ L+G
Sbjct: 17 NTRLYVGRLSSRTRTRDLEDLFGRYGRVRYVDMKHEFAFVEFSDARDADEARYNLDGRDF 76
Query: 103 DGKPMKVVVA----------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNF 146
DG M V A G C N CG GHW+++C +AG++
Sbjct: 77 DGSRMIVEFAKGVPRGPGGSREYMGRGPPPGSGRCFN------CGIDGHWARDC-KAGDW 129
Query: 147 RSSGCY 152
++ CY
Sbjct: 130 KNR-CY 134
>gi|297799522|ref|XP_002867645.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
gi|297313481|gb|EFH43904.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
Length = 305
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRA 58
M EE TA+++ N +N + L + A R + P P +V+VGNL +
Sbjct: 175 MSTVEEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDN 234
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKV 109
+ ++F +G VVE +V R +GFV + + ++N I L+G ++G+ ++V
Sbjct: 235 GRLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSNENELNDAIAALDGQNMEGRAIRV 294
Query: 110 VVA 112
VA
Sbjct: 295 NVA 297
>gi|222617767|gb|EEE53899.1| hypothetical protein OsJ_00434 [Oryza sativa Japonica Group]
Length = 377
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 25/126 (19%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMV 102
T+++VG LS TR ++ +LF YG V D+ + FV D+ D ++ L+G
Sbjct: 70 NTRLYVGRLSSRTRTRDLEDLFGRYGRVRYVDMKHEFAFVEFSDARDADEARYNLDGRDF 129
Query: 103 DGKPMKVVVA----------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNF 146
DG M V A G C N CG GHW+++C +AG++
Sbjct: 130 DGSRMIVEFAKGVPRGPGGSREYMGRGPPPGSGRCFN------CGIDGHWARDC-KAGDW 182
Query: 147 RSSGCY 152
++ CY
Sbjct: 183 KNR-CY 187
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ +P +I S++ P T VF+ NL + +
Sbjct: 100 NTADGERALEDLNYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 157
Query: 65 FVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 158 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 215
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + S+K + T V+V N+
Sbjct: 184 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYVKNIDPEVT 243
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELN 98
E RELF YG + I R+ +GFV ++D + + ELN
Sbjct: 244 DEEFRELFGKYGDITSATISRDDSGKSRGFGFVNYVDHQNAQSAVDELN 292
>gi|170035456|ref|XP_001845585.1| splicing factor [Culex quinquefasciatus]
gi|167877497|gb|EDS40880.1| splicing factor [Culex quinquefasciatus]
Length = 292
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDI-NKCIKELNGMMVD 103
K+FVG+L T+ E+R +F YG V ECD++ FVH+ S D+ I L+
Sbjct: 4 NKIFVGSLPPGTKPEEIRAMFENYGVVTECDVMNRCAFVHMQSSDMAENAIAALHNSAFK 63
Query: 104 GKPMKV 109
G + V
Sbjct: 64 GATINV 69
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+G++ PGT E IR +FE YG V ECDV+ FV
Sbjct: 5 KIFVGSLPPGTKPEEIRAMFENYGVVTECDVMNRCAFV 42
>gi|426198327|gb|EKV48253.1| hypothetical protein AGABI2DRAFT_191883 [Agaricus bisporus var.
bisporus H97]
Length = 426
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMVD 103
KV++G L ++TR ++ F G + ++ YGFV D+ + + + + N
Sbjct: 73 NKVYIGGLPEHTREADLHNCFGKIGGIANIELKVGYGFVEFDTREAAEESVAKYNEGHFM 132
Query: 104 GKPMKVVVA---GFISSILSCLNVIFFIRCGRGGHWSKECP 141
G +KV ++ G + F RCG+ GHW++ECP
Sbjct: 133 GNKIKVEISHGGGRTAKFAGDPGACF--RCGQMGHWARECP 171
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTP---TTK-----VFV 49
EN E+ + A+ E+NG+ +N +K ++ + R+ TT+ ++V
Sbjct: 239 ENHEDAQKAVDEMNGKELNGRIMFVGRAQKKMERQMELKRRFEQMKQDRTTRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+G++ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E + AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETHDAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++E+F +G ++ R +GFV ++ D K + E+NG ++G+ M V
Sbjct: 204 DEKLKEIFSKFGNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVDEMNGKELNGRIMFV 263
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGQPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V R YGFVH ++ D + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSRGYGFVHFETHDAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 28/133 (21%)
Query: 8 NDEEGRTAI--------KELNGQIV------------NEKPLKIEAATSRKGPNTPTTKV 47
N EE ++A+ KE+NGQ + E + EA K +
Sbjct: 290 NYEEHKSAVDAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNL 349
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNG 99
F+ NL D + ++ E F P+GT+ ++ + +GFV +P + K I E+N
Sbjct: 350 FIKNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQ 409
Query: 100 MMVDGKPMKVVVA 112
M++GKP+ V +A
Sbjct: 410 RMINGKPLYVALA 422
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 13/107 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 66
E+G AI ELN +V +P +I S++ P+ + +F+ NL + + F
Sbjct: 115 EDGEKAIDELNYSLVEGRPCRI--MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFS 172
Query: 67 PYGTVVECDIVRN-------YGFVHIDSPDINK-CIKELNGMMVDGK 105
+G ++ C + + +GFVH ++ + + I+ +NGM+++ +
Sbjct: 173 AFGRILSCKVATDDMGQSKCFGFVHYETGEAAEAAIENVNGMLLNDR 219
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E AI+ +NG ++N++ + + S+K + T ++V N+
Sbjct: 197 HYETGEAAEAAIENVNGMLLNDREVFVGKHVSKKDRESKFEEMKANYTNIYVKNIDLGFT 256
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFV----HIDSPDINKCI--KELNGMMV 102
E ELF PYG + + ++ +GFV H + D + + KE+NG +
Sbjct: 257 EKEFEELFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVDAVEALNDKEINGQKI 314
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAAT----------SRKGPNTPTT-------KV 47
+ EN ++ +++ LNGQ ++K + A SR N +
Sbjct: 394 NFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGANL 453
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
++ NL D+ +++ELF +GT+ C ++R+ GFV SP + ++ + E+N
Sbjct: 454 YIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMNS 513
Query: 100 MMVDGKPMKVVVA 112
MV KP+ V +A
Sbjct: 514 KMVVSKPLYVALA 526
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFV 66
E+ A+ LN +N KP++I S + P+ + T +F+ NL + + F
Sbjct: 221 EDAARALDVLNFTPLNGKPIRI--MYSHRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFS 278
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + + +GFV DS + K I +LNGM+++ K +V V F+
Sbjct: 279 AFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDK--QVFVGPFV 333
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 17/122 (13%)
Query: 1 MSSGH----MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGN 51
MS GH +++E + AI +LNG ++N+K + + ++ + K VFV N
Sbjct: 295 MSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERESTINKEKFNNVFVKN 354
Query: 52 LSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVD 103
+S+ ++ +F +G + ++R+ +GFV+ ++ D ++ LNG D
Sbjct: 355 ISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFD 414
Query: 104 GK 105
K
Sbjct: 415 DK 416
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E DE AIK +N ++NEK + + +K + T ++V N+S
Sbjct: 199 HYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEAT 258
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E R+LF YG V + R+ +GFV+ + + K ++ELNG G+ + V
Sbjct: 259 DEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYV 318
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 67
+G A++ELN ++ +P +I S++ P T VF+ NL + + F
Sbjct: 118 DGEKALEELNYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAA 175
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+G ++ C + ++ YGFVH ++ + + IK +N M+++ K + V
Sbjct: 176 FGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYV 225
>gi|387913830|gb|AFK10524.1| cold inducible RNA binding protein isoform 3 [Callorhinchus milii]
gi|392873312|gb|AFM85488.1| cold inducible RNA binding protein isoform 3 [Callorhinchus milii]
gi|392873324|gb|AFM85494.1| cold inducible RNA binding protein isoform 3 [Callorhinchus milii]
gi|392873420|gb|AFM85542.1| cold inducible RNA binding protein isoform 3 [Callorhinchus milii]
gi|392873526|gb|AFM85595.1| cold inducible RNA binding protein isoform 3 [Callorhinchus milii]
gi|392873598|gb|AFM85631.1| cold inducible RNA binding protein isoform 3 [Callorhinchus milii]
gi|392877296|gb|AFM87480.1| cold inducible RNA binding protein isoform 3 [Callorhinchus milii]
Length = 136
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINK 92
+ K+FVG L+ NT + E+F YG V E I+R+ +GFV +SP D
Sbjct: 2 SEERKLFVGGLNFNTEEQSLEEVFSEYGQVSEVRIIRDRDTGTSRGFGFVTFESPDDAQD 61
Query: 93 CIKELNGMMVDGKPMKVVVA 112
+ +NG ++G+ ++V A
Sbjct: 62 ALTSMNGRSLEGRQIRVDRA 81
>gi|326427574|gb|EGD73144.1| hypothetical protein PTSG_04857 [Salpingoeca sp. ATCC 50818]
Length = 2295
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAAT--SRKGPNTPTTKVFVGNLSDNTRA 58
+ + ME ++ + ++N E K EAA SR+ +++++GNLS
Sbjct: 1851 LDAQQMERRDDALQYLLQINLAFQEEVKKKQEAANAISRREAVEVLSRIYIGNLSREVTE 1910
Query: 59 PEVRELFVPYGTVVECDI--------VRNYGFVHIDSPDINK-CIKELNGMMVDGK 105
++R+ F YG + EC + + Y F+H D+P+ + E+NG+++ G+
Sbjct: 1911 FDLRKAFRKYGGIRECSVKHETTGTSFKGYAFLHFDAPEAAMLALSEMNGVIIGGR 1966
>gi|351705901|gb|EHB08820.1| Polyadenylate-binding protein 5 [Heterocephalus glaber]
Length = 382
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI--------EAATSRKGPNTPTTKVFVGNLSDNT 56
H ++ AI +NG +N + + + AA R T VFV NL D+
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNLGDDM 210
Query: 57 RAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMK 108
+++ELF YG + +VR+ +GFV ++ + K + EL+G +DGK +
Sbjct: 211 NDEKLKELFSEYGQIESVKVVRDASGKSKGFGFVKYETHEAAQKAVLELHGKSMDGKVLY 270
Query: 109 V 109
V
Sbjct: 271 V 271
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 26/172 (15%)
Query: 5 HMENDEEGRTAIKELNGQIV-----------------NEKPLKIEAATSRKGPNTPTTKV 47
+ E EE + A+ +NG+ V NE K E + +
Sbjct: 237 NFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRKFEQMKQDRLSRYQGVNL 296
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGM 100
+V NL D+ ++R+ F PYG + ++ + +GFV SP + K + E+NG
Sbjct: 297 YVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGSHSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 101 MVDGKPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCY 152
+V KP+ V +A + L + R S P G+F+ Y
Sbjct: 357 IVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSN--PLLGSFQQPSSY 406
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +++ +P++I S++ P + +F+ NL D+ + + F
Sbjct: 64 DAERALDTMNFEMLKGQPIRI--MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFST 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C + R +GFVH ++ + + I +NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVACDKHGSRGFGFVHFETHEAAQQAINTMNGMLLNDR--KVFVGHFKS 175
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E + AI +NG ++N++ + + SR+ T ++V NL +
Sbjct: 144 HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
+++LF +G ++ ++R+ +GFV+ + + K + +NG V G+
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGR 259
>gi|374997451|ref|YP_004972950.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
orientis DSM 765]
gi|357215817|gb|AET70435.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
orientis DSM 765]
Length = 83
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPDINKCIKE 96
T ++VGNL NT A E+ E F YG V I+ R +GF+ ++ D + +E
Sbjct: 3 TTLYVGNLPWNTTAEELGEFFSAYGQVESSRIITDRETGRSRGFGFIEVEDADAARMAEE 62
Query: 97 LNGMMVDGKPMKV 109
LNG G+P+ V
Sbjct: 63 LNGKDFGGRPLTV 75
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ ++ K + K+E T RK ++ +V
Sbjct: 239 EKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D+ +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 19/122 (15%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI---------EAATSRKGPNTPTTKVFVGNLSDN 55
H E E AI+++NG ++N++ + + EA K P V++ N ++
Sbjct: 144 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFPN--VYIKNFGED 201
Query: 56 TRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPM 107
+++LF +G + ++ + +GFV + D K + E+NG + GK +
Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQI 261
Query: 108 KV 109
V
Sbjct: 262 YV 263
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIV-----------------NEKPLKIEAATSRKGPNTPTTKVFV 49
E EE + A+ ++NG+ V NE K E + ++V
Sbjct: 239 EKHEEAQKAVMDMNGKEVSGRQLYVGRAQKRVERQNELKRKFEQMKQDRLNRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D+ ++R+ F PYG + ++ + +GFV SP + K + E+NG ++
Sbjct: 299 KNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRII 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GTKPLYVALA 368
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +++ +P++I S++ P + +F+ NL D+ + + F
Sbjct: 64 DAERALDTMNFEVIKGQPIRI--MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFST 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V R +GFVH ++ + + I +NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDEHGSRGFGFVHFETHEAAQQAISTMNGMLLNDR--KVFVGHFKS 175
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E + AI +NG ++N++ + + SR+ T ++V NL +
Sbjct: 144 HFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRREREAELRARAMEFTNIYVKNLQVDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G ++ ++ R +GFV+ + + K + ++NG V G+ + V
Sbjct: 204 EQGLQDLFSQFGKLLSVKVMKDNNGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRQLYV 263
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFV 49
++ E+ + A+ ++NG+ +N K + + A ++ T + +++
Sbjct: 273 QSHEDAQAAVDDMNGKQLNGKQIYVGRAQKKRERQTELKRHFEQIKQNQHIRYQGVNLYI 332
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFV-HIDSPDINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV S D K +E+NG +V
Sbjct: 333 KNLDDTINDEHLRKEFSPFGTITSAKVMMENGRSKGFGFVCFSSSKDAAKASREMNGKLV 392
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 393 ASKPLYVSLA 402
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N + + SR+ + T +++ N +N
Sbjct: 178 HFETQESAGKAIEKMNGMLLNNLKVFVGRFKSRRERESELGVKAKDYTNIYIKNFGENMD 237
Query: 58 APEVRELFVPYGTVV-------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+ E+F YG + +C + +GFV S D + ++NG ++GK + V
Sbjct: 238 DQRLTEIFAKYGPTLSVKVMTDDCGRSKGFGFVSFQSHEDAQAAVDDMNGKQLNGKQIYV 297
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNG 99
VFV NL + + + F +G ++ C ++ + YGFVH ++ + K I+++NG
Sbjct: 135 VFVKNLEKSIDNKALYDTFSTFGRILSCKVISDENGSKGYGFVHFETQESAGKAIEKMNG 194
Query: 100 MMVDGKPMKVVVAGFIS 116
M+++ +KV V F S
Sbjct: 195 MLLNN--LKVFVGRFKS 209
>gi|303247333|ref|ZP_07333606.1| RNP-1 like RNA-binding protein [Desulfovibrio fructosovorans JJ]
gi|302491247|gb|EFL51136.1| RNP-1 like RNA-binding protein [Desulfovibrio fructosovorans JJ]
Length = 103
Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPDINKCIK 95
+ K++VGNLS ++ +VR+ F PYG V+ +++ R +GFV +D + I
Sbjct: 2 SKKLYVGNLSFSSTEDDVRDHFAPYGEVISVNLITDRETGRLRGFGFVEMDDEGASAAIS 61
Query: 96 ELNGMMVDGKPMKV 109
L+G + G+ +KV
Sbjct: 62 ALDGKELAGRTLKV 75
>gi|90075970|dbj|BAE87665.1| unnamed protein product [Macaca fascicularis]
Length = 177
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
+V++G LS N R +++ F YG ++E D+ YGFV DS D + + ELNG + G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 105 KPMKV 109
+ + V
Sbjct: 63 ERVIV 67
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 236 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 295
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 296 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 355
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 356 GSKPLYVALA 365
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELF---SKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 256
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 25/131 (19%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFV 49
EN E+ A++ LN +N + L + EA K +FV
Sbjct: 156 ENHEDAVKAVEALNESDLNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFV 215
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMM 101
NL D+ ++ E F PYGT+ ++R +GFV +P + K I E N +
Sbjct: 216 KNLDDSVDDEKLEEEFTPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQI 275
Query: 102 VDGKPMKVVVA 112
V GKP+ V +A
Sbjct: 276 VAGKPLYVAIA 286
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E + + AI LNG ++N + + + SRK ++ T ++V N++ T
Sbjct: 61 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 120
Query: 58 APEVRELFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+ ++LF+ +G +V + ++ +GFV+ ++ D K ++ LN ++G+ + V
Sbjct: 121 DEQFQDLFIQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYV 180
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E DE AIK +NG ++NEK + + +K + T ++V N+++
Sbjct: 198 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNIANEVT 257
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E R+LF +G V + R+ +GFV+ + + K + +LNG G+ + V
Sbjct: 258 DDEFRDLFTAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYV 317
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 13/110 (11%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 67
+G A++ELN ++ +P +I S++ P T VF+ NL + + F
Sbjct: 117 DGEKALEELNYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAA 174
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+G ++ C + ++ YGFVH ++ + ++ IK +NGM+++ K + V
Sbjct: 175 FGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV 224
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNT-------PTTKVFVGNLSDNTR 57
H E+DE + AI+ +NG ++N + + + ++K + T VFV N +
Sbjct: 186 HYESDEAAQAAIENINGMLLNGREIYVGPHLAKKDRESRFQEMIKNYTNVFVKNFDTEST 245
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKV 109
E+RELF YG + + + +GFV+ + D K ++ LN GKP+ V
Sbjct: 246 EDELRELFESYGPITSIHLQVDSEGHNKGFGFVNFAEHDDAVKAVEALNDKEYKGKPLYV 305
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 24 VNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------ 77
V+E K EA K + +F+ NL ++ + E F P+GT+ ++
Sbjct: 315 VHELTKKYEADRLEKLQKYQSVNLFIKNLDESIDDARLEEEFKPFGTITSAKVMLDENGK 374
Query: 78 -RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
R +GFV + +P + K I E+N MV KP+ V +A
Sbjct: 375 SRGFGFVCLSTPEEATKAISEMNQRMVANKPLYVALA 411
Score = 38.1 bits (87), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 13/109 (11%)
Query: 12 GRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVRELFVPY 68
G A++ELN + K ++ S++ P+ + + +F+ NL + + F +
Sbjct: 106 GERALEELNYAEI--KGVRCRLMWSQRDPSLRRSGSGNIFIKNLDPAIENKTLHDTFSSF 163
Query: 69 GTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 109
G V+ C + + +GFVH +S + + I+ +NGM+++G+ + V
Sbjct: 164 GKVLSCKVATDENGNSKGFGFVHYESDEAAQAAIENINGMLLNGREIYV 212
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ +P +I S++ P T VF+ NL + +
Sbjct: 100 NTADGERALEDLNYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 157
Query: 65 FVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 158 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 215
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + S+K + T V+V N+
Sbjct: 184 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYVKNIDPEVT 243
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
E RELF +G + I R+ +GFV ++D + + +LN G+ + V
Sbjct: 244 DEEFRELFGKFGDITSATISRDDSGKSRGFGFVNYVDHENAQTAVDDLNDKDFHGQKLYV 303
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFV 49
E E+ + A+ E+NG+ +N K + K E + ++V
Sbjct: 239 EKHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKCKFEQMKQDRITRYQVVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDAIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 14/122 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ ++ ++ A+ +N ++ KPL+I S++ P+ + +FV NL + +
Sbjct: 58 NFQHPKDAEHALDTMNFDVIKGKPLRI--MWSQRDPSLRKSGVGNIFVKNLDKSINNKAL 115
Query: 62 RELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGF 114
+ +G V+ C +V + YGFVH ++ + + I+++NG+ ++ + KV V F
Sbjct: 116 YDTVSAFGNVLSCKVVCDENGSKGYGFVHFETREAAERAIEKMNGIPLNDR--KVFVGRF 173
Query: 115 IS 116
S
Sbjct: 174 KS 175
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG +N++ + + SRK V++ N ++
Sbjct: 144 HFETREAAERAIEKMNGIPLNDRKVFVGRFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYV 263
>gi|427784005|gb|JAA57454.1| Putative alternative splicing factor [Rhipicephalus pulchellus]
Length = 181
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN----YGFV-HIDSPDINKCIKELNGM 100
++F+G L +TR +V ++F YG ++ CD+ Y FV + D D +K NG
Sbjct: 6 QLFIGRLPLDTRERDVEQVFERYGRLLRCDVKYGTGMAYAFVDYEDHRDAEDAVKYENGR 65
Query: 101 MVDGKPMKVVVA---GFISSI----LSCLNVIFFIRCGRGGHWSKECPRAGNFRS 148
+ G+ + V A F S + + RC R GHW+++CP + R+
Sbjct: 66 EIRGQSVVVEWARGPSFRPSAGKDRMGYQSFDECYRCRRTGHWARDCPELDHERA 120
>gi|357120111|ref|XP_003561773.1| PREDICTED: polyadenylate-binding protein-like [Brachypodium
distachyon]
Length = 714
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 19/118 (16%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ TA++++N ++ +KP+++ S + P+ + VFV NL+D+ ++ELF
Sbjct: 155 DAMTALEKMNHSLILDKPIRV--MWSNRDPDARRSGVGNVFVKNLNDHIDNVILQELFSK 212
Query: 68 YGTVVECDIVRN-------YGFVHI---DSPDINKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + RN YGFV +S DI I+ LN +G+ + VA FI
Sbjct: 213 FGDILSCKVARNDDGTSRGYGFVQFAAQESADI--AIENLNNSHFEGRQLH--VAHFI 266
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 22 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-- 79
Q+++E+ + E T G N V++ N+SD +RE F +G + I+R+
Sbjct: 366 QLLHEEK-RNEILTKSNGSN-----VYIKNISDRVDDETLRERFDEFGNITSVKIMRDDK 419
Query: 80 -----YGFVHIDSPDINKC-IKELNGMMVDGKPMKVVVA 112
+GFV ++PD KC + + G+M KP+ V +A
Sbjct: 420 GISKGFGFVCYNTPDEAKCAVSSMRGVMFYDKPLYVAIA 458
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 24/140 (17%)
Query: 5 HMENDEEGRTAIKELNGQIV-----------------NEKPLKIEAATSRKGPNTPTTKV 47
+ E EE + A+ +NG+ V NE + E + +
Sbjct: 237 NFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNL 296
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGM 100
+V NL D+ ++R+ F PYG + ++ + +GFV SP + K + E+NG
Sbjct: 297 YVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 101 MVDGKPMKVVVAGFISSILS 120
+V KP+ V +A +IL+
Sbjct: 357 IVGTKPLYVALAEGRKAILT 376
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKG-PNTPTTKVFVGNLSDNTRAPEVRELFVPYG 69
+ A+ +N +++ +P++I + G + +F+ NL D+ + + F +G
Sbjct: 64 DAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG 123
Query: 70 TVVECDIV------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFIS 116
++ C +V R +GFVH ++ + + I +NGM+++ + KV V F S
Sbjct: 124 NILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDR--KVFVGHFKS 175
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E + AI +NG ++N++ + + SR+ T ++V NL +
Sbjct: 144 HFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G ++ ++R+ +GFV+ + + K + +NG V G+ + V
Sbjct: 204 EQRLQDLFSQFGKMLSVKVMRDVSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYV 263
>gi|409079907|gb|EKM80268.1| hypothetical protein AGABI1DRAFT_113469 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 423
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMVD 103
KV++G L ++TR ++ F G + ++ YGFV D+ + + + + N
Sbjct: 70 NKVYIGGLPEHTREADLHNCFGKIGGIANIELKVGYGFVEFDTREAAEESVAKYNEGHFM 129
Query: 104 GKPMKVVVA---GFISSILSCLNVIFFIRCGRGGHWSKECP 141
G +KV ++ G + F RCG+ GHW++ECP
Sbjct: 130 GNKIKVEISHGGGRTAKFAGDPGACF--RCGQMGHWARECP 168
>gi|414886904|tpg|DAA62918.1| TPA: hypothetical protein ZEAMMB73_604225 [Zea mays]
Length = 484
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 26/126 (20%)
Query: 9 DEEGRTAIKELNGQIVNEKPLKIEAATSRKG---------------------PNTPT-TK 46
+E+ R A+ E+NG +++ + ++I AA ++K N P T
Sbjct: 262 NEQAR-AMTEMNGMLLSTRQMRIGAAANKKNRDAQQTYATDGAYQSSKGNSSENDPNNTT 320
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTV--VECDIVRNYGFVHIDSPD-INKCIKELNGMMVD 103
VFVG L N +R++F PYG + V+ + ++ GFV S + I+ LNG V
Sbjct: 321 VFVGGLDSNVNEEYLRQIFTPYGEISYVKIPVGKHCGFVQFTSRSCAEEAIRMLNGSQVG 380
Query: 104 GKPMKV 109
G+ +++
Sbjct: 381 GQKVRL 386
>gi|341889735|gb|EGT45670.1| CBN-ASD-1 protein [Caenorhabditis brenneri]
Length = 467
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 56/91 (61%), Gaps = 9/91 (9%)
Query: 29 LKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN------YGF 82
++I+ + S +G ++ V N+ R P+++ +F YGTVV+ +I+ N +GF
Sbjct: 116 MQIDRSNSSEGDGN--RRLHVSNIPFKYREPDLQAMFEKYGTVVDVEIIFNERGSKGFGF 173
Query: 83 VHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
V +DSP D ++ +E++G +++G+ ++V +A
Sbjct: 174 VTMDSPADADRARQEIHGKLIEGRRVEVNMA 204
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 15/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + F
Sbjct: 55 DAERALDTMNFDLIRNKPIRI--MWSQRDPSLRRSGVGNVFIKNLDRQIDNKAIYDTFSA 112
Query: 68 YGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + + YGFVH ++ + N I+++NGM+++GK KV V FI
Sbjct: 113 FGNILSCKVALDEKGNSKGYGFVHFETEEAANTSIEKVNGMLLNGK--KVYVGKFI 166
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 26/132 (19%)
Query: 7 ENDEEGRTAIKELNGQIVNE-KPL-----------------KIEAATSRKGPNTPTTKVF 48
E E A++ LNG+ + E K L K E ++ + ++
Sbjct: 231 ETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLY 290
Query: 49 VGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINKC-IKELNGM 100
V NL D+ +R+ F YGT+ ++ + +GFV SP+ C + ELNG
Sbjct: 291 VKNLDDSIDDERLRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGR 350
Query: 101 MVDGKPMKVVVA 112
+V KP+ V +A
Sbjct: 351 VVGSKPLYVALA 362
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E T+I+++NG ++N K + + RK T V+V N ++
Sbjct: 136 HFETEEAANTSIEKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEEFD 195
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGM-MVDGKPMK 108
++++ F PYG + ++ + +GFV ++ + + ++ LNG M +GK +
Sbjct: 196 DEKLKDFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLY 255
Query: 109 VVVA 112
V A
Sbjct: 256 VARA 259
>gi|47223169|emb|CAG11304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 19/114 (16%)
Query: 18 ELNGQIV----NEKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVRELF 65
ELNG+++ +K L+ + RK ++ +V NL D +R+ F
Sbjct: 253 ELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDGIDDERLRKEF 312
Query: 66 VPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
PYGT+ ++ R +GFV SP + K + E+NG +V KP+ V +A
Sbjct: 313 APYGTITSAKVMTDGPQSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 366
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E AI+ +NG ++N++ + + SRK T V++ N ++
Sbjct: 142 HFETEEAANRAIETMNGMLLNDRKVFVGNFKSRKEREEELGSKALKFTNVYIKNFGEDYT 201
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKV 109
+++E+F +G + ++ R +GFV+ D K + E+NG ++GK + V
Sbjct: 202 DEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYV 261
>gi|320583460|gb|EFW97673.1| nuclear localization sequence binding protein [Ogataea
parapolymorpha DL-1]
Length = 500
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 27/131 (20%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR------------------KGPNTPTTKV 47
E+ E+ + A+++ G+ + +P+ ++ +TS+ P+ P+ +
Sbjct: 308 FESKEQAQKALEQFQGREIEGRPINLDMSTSKPQTPSQNQKFQDRAKKYGDTPSQPSDTL 367
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVV--------ECDIVRNYGFVHIDSPDINK-CIKELN 98
FVGNLS ++E F +GTV+ E + + +G+V S D K ++ LN
Sbjct: 368 FVGNLSFQADRDTLKEFFEQHGTVLGIRIPTHPESEQPKGFGYVQFGSVDEAKAALEALN 427
Query: 99 GMMVDGKPMKV 109
G + G+P+++
Sbjct: 428 GEYIAGRPVRL 438
>gi|255633638|gb|ACU17178.1| unknown [Glycine max]
Length = 196
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 37 RKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS- 87
R + P+TK+F+G +S +T +RE F YG VV+ I+ R +GF+ S
Sbjct: 34 RSMSSAPSTKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSV 93
Query: 88 PDINKCIKELNGMMVDGKPMKVVVA 112
+ + I+ L+G + G+P++V A
Sbjct: 94 EEASSAIQALDGQDLHGRPIRVNYA 118
>gi|114053173|ref|NP_001040506.1| bmp-2 protein [Bombyx mori]
gi|98990265|gb|ABF60228.1| bmp-2 [Bombyx mori]
Length = 297
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMM 101
P TKVFVG+L ++ ++R+LF +G V ECDI+ GFVH+ + + I+ L+
Sbjct: 3 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNST 62
Query: 102 VDG 104
+G
Sbjct: 63 FNG 65
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
V K+F+G++ G+ E +R LFE++G V ECD++ GFV
Sbjct: 2 VPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFV 43
>gi|225714068|gb|ACO12880.1| Splicing factor, arginine/serine-rich 4 [Lepeophtheirus salmonis]
gi|290462833|gb|ADD24464.1| Splicing factor, arginine/serine-rich 4 [Lepeophtheirus salmonis]
Length = 233
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
++++GN+SD+TR +V + F YG + E + YGFV D D + +++L+G ++G
Sbjct: 7 RLYLGNISDDTRERDVEKFFKGYGKLREVALKNGYGFVEFEDHRDADDAVQDLDGKDMNG 66
Query: 105 KPMKVVVA 112
++V A
Sbjct: 67 SRVRVEFA 74
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E DE AIK +NG ++NEK + + +K + T V+V N++
Sbjct: 195 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINHEVT 254
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E RELF +G V + R+ +GFV+ + + K + +LNG G+ + V
Sbjct: 255 DDEFRELFEKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYV 314
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 57/110 (51%), Gaps = 13/110 (11%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 67
+G A++ELN ++ +P +I S++ P T +F+ NL + + F
Sbjct: 114 DGEKALEELNYTLIKGRPCRI--MWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAA 171
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+G ++ C + ++ YGFVH ++ + ++ IK +NGM+++ K + V
Sbjct: 172 FGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV 221
>gi|301091123|ref|XP_002895753.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262096665|gb|EEY54717.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 207
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 24/151 (15%)
Query: 38 KGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----RNYGFVHI---DSPD 89
K +P TK+ V NL + EVRELF G V + +IV R+ G + D
Sbjct: 45 KDAASPGTKILVKNLKFDILEEEVRELFGTVGEVSKTEIVYDRSGRSKGIARVWFARRSD 104
Query: 90 INKCIKELNGMMVDGKPMKV-------VVAGFISSIL--SCLNVIFFIRCGRG------- 133
+K IK+ +G +DG+PM++ V G + L +V F + G G
Sbjct: 105 ADKAIKQYDGRTLDGQPMQIALDSDKNVRNGLFGTALQRDDKDVKFKVSFGEGNDNEQSK 164
Query: 134 GHWSKECPRAGNFRSSGCYCKSKSSHKIYQD 164
G +K R + S G K + K +D
Sbjct: 165 GRRNKRRVRGNDRGSQGGRGKESAPSKTAED 195
>gi|148237346|ref|NP_001084981.1| RNA-binding motif protein, X chromosome [Xenopus laevis]
gi|82236857|sp|Q6IRQ4.1|RBMX_XENLA RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G
gi|47682580|gb|AAH70649.1| MGC82187 protein [Xenopus laevis]
Length = 370
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVE--------CDIVRNYGFVHIDSP-DINKCIKE 96
K+F+G L+ T + +F YG VVE + R + FV +SP D +E
Sbjct: 9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68
Query: 97 LNGMMVDGKPMKVVVA 112
LNG +DGKP+KV A
Sbjct: 69 LNGKALDGKPIKVEQA 84
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E AI ++NG ++N K + + RK T V++ N D
Sbjct: 145 HFETEEAANKAISKVNGMLLNNKKVYVGKFIPRKEREKMLGDKARCFTNVYIKNFGDELD 204
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
++ +F YG + ++ R +GFV + PD + ++ELNG + G+P+ V
Sbjct: 205 DDKLLVIFEKYGKITSAKVMTDDSGKNRGFGFVSFEEPDSAERAVEELNGKDMGGRPLYV 264
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 25/131 (19%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFV 49
E + A++ELNG+ + +PL + A + + + ++V
Sbjct: 240 EEPDSAERAVEELNGKDMGGRPLYVGRAQKKAERQSELKRHFEQLKQERLNRYQGVNLYV 299
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMM 101
NL D +R+ F P+G + ++ + +GFV SP+ K + E+NG +
Sbjct: 300 KNLDDALDDERLRKEFGPFGNITSAKVMTDANGRSKGFGFVCFSSPEEATKAVTEMNGRI 359
Query: 102 VDGKPMKVVVA 112
V KP+ V +A
Sbjct: 360 VVSKPLYVALA 370
>gi|115468728|ref|NP_001057963.1| Os06g0589700 [Oryza sativa Japonica Group]
gi|113596003|dbj|BAF19877.1| Os06g0589700 [Oryza sativa Japonica Group]
Length = 399
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 25/131 (19%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFV 49
E E R A+K LNG+ + + L K E ++K T +++
Sbjct: 17 EKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYL 76
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMM 101
NL D+ +R+LF +G V C ++ + GFV + D N I ++NG M
Sbjct: 77 KNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKM 136
Query: 102 VDGKPMKVVVA 112
V KP+ V VA
Sbjct: 137 VGKKPLYVAVA 147
>gi|384499302|gb|EIE89793.1| hypothetical protein RO3G_14504 [Rhizopus delemar RA 99-880]
Length = 292
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 16/119 (13%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT------KVFVGNLSDNTRAPEVREL 64
EG+ A L+G + ++++ A +G +T T KVFV NLS +T +++
Sbjct: 133 EGKQAAMALDGTEFMGRTIRVDDAQPAQGRSTDTNYGPKTDKVFVANLSYDTDEDSLKQA 192
Query: 65 FVPYGTVV---------ECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAG 113
F +GT+V + +R ++ ++ D +K +NG+ +DG+P++ +G
Sbjct: 193 FEKFGTIVGEIGLPISRDTGRIRGIAYIQFETEDEAEAAVKGMNGVYLDGRPIRTDFSG 251
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG---------PNTPTTKV-------- 47
+ EN E A+ ELN + +N + + + A ++ NT K+
Sbjct: 278 NFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNL 337
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNG 99
F+ NL D + ++ E F P+G++ ++ + +GFV SP+ K I E+N
Sbjct: 338 FIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQ 397
Query: 100 MMVDGKPMKVVVA 112
M+ GKP+ V +A
Sbjct: 398 RMIYGKPLYVALA 410
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------V 47
+ E E A++ELN + +N + + + A ++ K +
Sbjct: 294 NFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNL 353
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNG 99
FV NL + + ++ E F P+GT+ ++ + +GFV +P+ K I E+N
Sbjct: 354 FVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQ 413
Query: 100 MMVDGKPMKVVVA 112
MV+GKP+ V +A
Sbjct: 414 RMVNGKPLYVALA 426
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E + AI+ +NG ++N++ + + S+K + T ++V N+
Sbjct: 201 HYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYT 260
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E ELF P+G + + ++ +GFV+ + + K ++ELN ++G+ + V
Sbjct: 261 EKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYV 320
>gi|111226286|ref|XP_001134510.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|122096694|sp|Q1ZXC2.1|PAP1B_DICDI RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein, cytoplasmic 1-B
gi|90970453|gb|EAS66827.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 814
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 18/133 (13%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKI----EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
N+ + A+ LN +V+ KP +I T RK T +FV NL + +
Sbjct: 236 NNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRK---TNVGNIFVKNLEKGVDNAMLYD 292
Query: 64 LFVPYGTVVECD------IVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C I + YG+VH ++ D K I+++NG ++ GKP+ V F+S
Sbjct: 293 TFSSFGNILSCKVEFEKGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPIN--VERFVS 350
Query: 117 SI--LSCLNVIFF 127
+ N +FF
Sbjct: 351 KVERYKVENKVFF 363
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAP 59
E +E ++AI+++NG ++N+K + + R+ G + V+V NL +NT
Sbjct: 158 QFEKEESAQSAIEKVNGMLLNDKQVFVGPFVRRQERDLSGGVSKFNNVYVKNLGENTTDD 217
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 105
E++++F YG + ++R+ +GFV+ + + D K ++ LNG D K
Sbjct: 218 ELKKVFGAYGPISSAVVMRDNEGKSKCFGFVNFELADDAAKAVEALNGKKQDEK 271
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 16/103 (15%)
Query: 18 ELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV 77
EL + E+ +IE +G N +++ NL D ++RELF YGT+ C ++
Sbjct: 287 ELRAKFEQERKSRIE---KYQGVN-----LYLKNLDDAVDDEKLRELFAEYGTITSCKVM 338
Query: 78 -------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
R GFV +P + + + E+N MV KP+ V +A
Sbjct: 339 KDPQGQSRGSGFVAFSTPEEATRAVTEMNTKMVGSKPLYVALA 381
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCI 94
+T V+VG+L N ++ E+F G VV + R+ Y +V+ S D + +
Sbjct: 23 STSVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYHSAQDATRAL 82
Query: 95 KELNGMMVDGKPMKVVVAGFISSILSCLNVIFFIR 129
+ LN V+GKP++++ + S+ FI+
Sbjct: 83 ELLNFTPVNGKPIRIMFSHRDPSLRKSGAANIFIK 117
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIV-----------------NEKPLKIEAATSRKGPNTPTTKVFV 49
E EE + A+ +NG+ V NE + E + ++V
Sbjct: 239 EKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D+ ++E+F YG + ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDSINDDRLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GTKPLYVALA 368
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E + AI +NG ++N++ + + SR+ T ++V NL +
Sbjct: 144 HFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G ++R+ +GF++ + + K + +NG V G+ + V
Sbjct: 204 EQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYV 263
>gi|14906166|gb|AAK72507.1| putative polyadenylate-binding protein [Aedes aegypti]
Length = 289
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 36/137 (26%)
Query: 7 ENDEEGRTAIKELNGQIVNE-----------------------KPLKIEAATSRKGPNTP 43
EN E A++ELNG+ + E + LK+E T +G N
Sbjct: 54 ENPESAEHAVQELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVN-- 111
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHID--SPDINKCIK 95
++V NL D+ +R+ F P+GT+ ++ + +GFV + + K +
Sbjct: 112 ---LYVKNLDDSIDDERLRKEFSPFGTITSAKVMLEEGRSKGFGFVLFSQHAEEATKAVT 168
Query: 96 ELNGMMVDGKPMKVVVA 112
E+NG +V KP+ V +A
Sbjct: 169 EMNGRIVGSKPLYVALA 185
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 13/91 (14%)
Query: 30 KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGF 82
K+E + +G N ++V NL D+ ++R F P+GT+ C ++ + +GF
Sbjct: 319 KMEKLSKYQGVN-----LYVKNLEDDVDDDKLRAEFEPFGTITSCKVMSDEKGSSKGFGF 373
Query: 83 VHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
V SPD K I E+N M+ KP+ V +A
Sbjct: 374 VCFSSPDEATKAIAEMNNKMIGSKPLYVSLA 404
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 13/113 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ +P +I S++ P T +F+ NL + + +
Sbjct: 95 NTADGERALEQLNYSLIKGRPCRI--MWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDT 152
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKV 109
FV +G V+ C + + YGFVH ++ + + IK +NGM+++ K + V
Sbjct: 153 FVAFGNVLSCKVATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYV 205
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E TAIK +NG ++N+K + + RK + T +++ NL
Sbjct: 179 HYETAEAAETAIKAVNGMLLNDKKVYVGPHIPRKERQSKLDEMKAQFTNLYIKNLDTEVT 238
Query: 58 APEVRELFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
E ELF YG+V + + +GFV+ +S + + L+ + GK + V
Sbjct: 239 QEEFEELFNRYGSVTSAIVQVDDEGRSKGFGFVNYESHEEAQAAVDNLHDTDLKGKKLYV 298
Query: 110 VVA 112
A
Sbjct: 299 TRA 301
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAAT----------SRKGPNTPTT-------KV 47
+ EN ++ +++ LNGQ ++K + A SR N +
Sbjct: 255 NFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGANL 314
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
++ NL D+ +++ELF +GT+ C ++R+ GFV SP + ++ + E+N
Sbjct: 315 YIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMNS 374
Query: 100 MMVDGKPMKVVVA 112
MV KP+ V +A
Sbjct: 375 KMVVSKPLYVALA 387
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 15/119 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEVREL 64
N ++ A+ LN +N KP++I S + P+ + T +F+ NL + +
Sbjct: 80 NPQDAARALDVLNFTPLNGKPIRI--MYSHRDPSIRKSGTGNIFIKNLDKGIDHKALHDT 137
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
F +G ++ C + + +GFV DS + K I +LNGM+++ K +V V F+
Sbjct: 138 FSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDK--QVFVGPFV 194
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 17/122 (13%)
Query: 1 MSSGH----MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----VFVGN 51
MS GH +++E + AI +LNG ++N+K + + ++ + K VFV N
Sbjct: 156 MSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERESTINKEKFNNVFVKN 215
Query: 52 LSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVD 103
+S+ ++ +F +G + ++R+ +GFV+ ++ D ++ LNG D
Sbjct: 216 ISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFD 275
Query: 104 GK 105
K
Sbjct: 276 DK 277
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCI 94
TT ++VG+L N ++ +LF G VV + R+ YG+V+ +P D + +
Sbjct: 29 TTSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARAL 88
Query: 95 KELNGMMVDGKPMKVV 110
LN ++GKP++++
Sbjct: 89 DVLNFTPLNGKPIRIM 104
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 22/148 (14%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H +N AI+E+NG ++ + L + +RK T V+V N D+
Sbjct: 242 HFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKVNEFTNVYVKNFGDDMD 301
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
++E+F YG + ++ + +GFV DS + K ++E+NG V+G+ + V
Sbjct: 302 DERLKEVFSKYGKTLSVKVMTDSGGKSKGFGFVSFDSHEAAKKAVEEMNGKDVNGQLLFV 361
Query: 110 VVAGFISSILSCLNVIF-------FIRC 130
A S + L +F F RC
Sbjct: 362 GRAQKKSERQAELKQMFEQLKQERFRRC 389
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 15/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDLIRGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSA 121
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + NK I+++NGM+++GK KV V FI
Sbjct: 122 FGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGK--KVYVGRFI 175
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 33/139 (23%)
Query: 7 ENDEEGRTAIKELNG-QIVNEKPL-----------------KIEAATSRKGPNTPTTKVF 48
E+ E TA+ LNG ++V KPL + EA + ++
Sbjct: 240 ESPEAAETAVDALNGKELVEGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLY 299
Query: 49 VGNLSDNTRAPEVRELFVPYGTVVECDIV--------------RNYGFVHIDSP-DINKC 93
V NL D +R+ F P+GT+ ++ + +GFV SP + K
Sbjct: 300 VKNLDDTIDDERLRKEFAPFGTITSAKVMIEENKTESFITTRSKGFGFVCFSSPEEATKA 359
Query: 94 IKELNGMMVDGKPMKVVVA 112
+ E+NG +V KP+ V +A
Sbjct: 360 VTEMNGRIVGSKPLYVALA 378
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 16/121 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E +E +I+++NG ++N K + + RK T V+V N ++
Sbjct: 145 HFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDLS 204
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGM-MVDGKPMK 108
++R +F +G + ++ + +GFV +SP+ + + LNG +V+GKP+
Sbjct: 205 EEQLRNMFEKFGKITSYKVMSKDDGKSKGFGFVAFESPEAAETAVDALNGKELVEGKPLY 264
Query: 109 V 109
V
Sbjct: 265 V 265
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 168 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 227
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 228 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 287
Query: 103 DGKPMKVVVA 112
KP V +A
Sbjct: 288 ATKPFYVALA 297
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 73 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 132
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 133 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 192
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 57/108 (52%), Gaps = 14/108 (12%)
Query: 19 LNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTVVECD 75
+N ++ KP++I S++ P+ + +F+ NL + + + F +G ++ C
Sbjct: 1 MNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 58
Query: 76 IV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 59 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 104
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 174 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 233
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 234 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 293
Query: 103 DGKPMKVVVA 112
KP V +A
Sbjct: 294 ATKPFYVALA 303
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 79 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 138
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 139 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 198
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ +N ++ KP++I S++ P+ + +F+ NL + + + F +G +
Sbjct: 3 ALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 60
Query: 72 VECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 61 LSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 110
>gi|242041385|ref|XP_002468087.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
gi|241921941|gb|EER95085.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
Length = 654
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 15/112 (13%)
Query: 15 AIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVPYGTV 71
A+ +LN +V +KP+++ S + P+ + +FV NL+++ ++ELF +G V
Sbjct: 99 ALDKLNHSLVLDKPIRV--MWSNRDPDARRSGVGNIFVKNLNNSVDNASLQELFSKFGDV 156
Query: 72 VECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+ C + +N YGFV S + ++ I LNG + + + K+ VA FI
Sbjct: 157 LSCKVAKNEDGTSRGYGFVQFASQESADEAIGNLNGSLFNDR--KLHVATFI 206
>gi|242055377|ref|XP_002456834.1| hypothetical protein SORBIDRAFT_03g043760 [Sorghum bicolor]
gi|241928809|gb|EES01954.1| hypothetical protein SORBIDRAFT_03g043760 [Sorghum bicolor]
Length = 147
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCI 94
+TK+FVG LS ++RE F +G V E ++ R +GFV+ S D N I
Sbjct: 36 STKLFVGGLSWGVDDMKLREAFSGFGDVTEARVITDRDTGKSRGFGFVNYTSSDAANAAI 95
Query: 95 KELNGMMVDGKPMKVVVA 112
++G +DG+P++V +A
Sbjct: 96 SGMDGKEIDGRPVRVNIA 113
>gi|241701254|ref|XP_002411916.1| RNA binding motif-containing protein, putative [Ixodes
scapularis]
gi|215504865|gb|EEC14359.1| RNA binding motif-containing protein, putative [Ixodes
scapularis]
Length = 81
Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD 89
+TK++VG+L + + +F YG V ECDIV+NY FVH+ + D
Sbjct: 3 STKLYVGSLPEGCDNASLEAIFAKYGKVDECDIVKNYAFVHMANED 48
Score = 44.7 bits (104), Expect = 0.074, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+++G++ G + +F KYGKV ECD+VKNY FV
Sbjct: 5 KLYVGSLPEGCDNASLEAIFAKYGKVDECDIVKNYAFV 42
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELN 98
++V NL D +++ F P+GT+ C ++++ +GFV SPD K + E+N
Sbjct: 459 LYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAVAEMN 518
Query: 99 GMMVDGKPMKVVVA 112
G M+ KP+ V +A
Sbjct: 519 GKMLGSKPLYVSLA 532
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVREL 64
N + A+++LN ++ K +I S++ P+ T +F+ NL + + +
Sbjct: 223 NAADAERALEQLNYSLIKNKACRI--MWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDT 280
Query: 65 FVPYGTVVECDIV-------RNYGFVH-IDSPDINKCIKELNGMMVDGK 105
F +G ++ C + + YGFVH + IK +NGM ++ K
Sbjct: 281 FAAFGDILSCKVATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDK 329
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKE 96
+++ NL D+ ++ ELF +GTV C I+R+ GFV +P + + + E
Sbjct: 306 ANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAE 365
Query: 97 LNGMMVDGKPMKVVVA 112
+NG MV GKP+ V A
Sbjct: 366 MNGKMVAGKPLYVAPA 381
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 12/93 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-----PNTPTTKVFVGNLSDNTRAP 59
EN+E ++AI +LNG ++N+KP+ + ++ N V+V NLS++
Sbjct: 158 QFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDD 217
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHI 85
+++ F YGT+ ++R+ +GFV+
Sbjct: 218 DLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNF 250
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEV 61
+ N + A+ LN +N KP++I S + P+ + +F+ NL +
Sbjct: 71 NFSNPHDAAKAMDVLNFTPLNNKPIRI--MYSHRDPSVRKSGAANIFIKNLDRAIDHKAL 128
Query: 62 RELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+ F +G ++ C I + YGFV ++ + I +LNGM+++ KP+ V
Sbjct: 129 YDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYV 184
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 24/132 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------V 47
+ E EE + A+ +NG+ V+ + L + A R + + +
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNL 296
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGM 100
+V NL D+ ++E+F YG + ++ + +GFV SP + K + E+NG
Sbjct: 297 YVKNLDDSINDERLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 101 MVDGKPMKVVVA 112
+V KP+ V +A
Sbjct: 357 IVGTKPLYVALA 368
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E + AI +NG ++N++ + + SR+ T ++V NL N
Sbjct: 144 HFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++R+ +GFV+ + + K + +NG V G+ + V
Sbjct: 204 EQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYV 263
>gi|324503776|gb|ADY41634.1| Paraspeckle component 1 [Ascaris suum]
Length = 486
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-RNYGFVHIDSPDINKCIKE-LNGMMVD 103
++FVGNL ++ + E++ELF P+G + EC + + + F+ +D+ + KE ++G M+
Sbjct: 14 RLFVGNLPNDLKEEELKELFSPHGDIAECYLSGKGFAFLRMDTRAHAESAKEAIDGKMIH 73
Query: 104 GKPMKVVVA 112
+P++V A
Sbjct: 74 NRPVRVRFA 82
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A+ ++NG+ VN +K ++ +A R+ ++ ++
Sbjct: 245 ERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYI 304
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 305 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIV 364
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 365 GSKPLYVALA 374
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSDNTR 57
H E + AI+++NG ++N++ + + E T V++ N ++
Sbjct: 150 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMD 209
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
++E F YG + ++ + +GFV + D NK + ++NG V+GK M V
Sbjct: 210 DERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFV 269
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNG 99
VF+ NL + + + F +G ++ C +V + Y FVH ++ D ++ I+++NG
Sbjct: 107 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNG 166
Query: 100 MMVDGKPMKVVVAGF 114
M+++ + KV V F
Sbjct: 167 MLLNDR--KVFVGRF 179
>gi|225713170|gb|ACO12431.1| Splicing factor, arginine/serine-rich 4 [Lepeophtheirus salmonis]
Length = 129
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
++++GN+SD+TR +V + F YG + E + YGFV D D + +++L+G ++G
Sbjct: 7 RLYLGNISDDTRERDVEKFFKGYGKLREVALKNGYGFVEFEDHRDADDAVQDLDGKDMNG 66
Query: 105 KPMKVVVA 112
++V A
Sbjct: 67 SRVRVEFA 74
>gi|212276326|ref|NP_001130962.1| Ribonucleoprotein like protein isoform 1 [Zea mays]
gi|194690564|gb|ACF79366.1| unknown [Zea mays]
gi|195616124|gb|ACG29892.1| ribonucleoprotein like protein [Zea mays]
gi|224030751|gb|ACN34451.1| unknown [Zea mays]
gi|414592149|tpg|DAA42720.1| TPA: Ribonucleoprotein like protein isoform 1 [Zea mays]
gi|414592150|tpg|DAA42721.1| TPA: Ribonucleoprotein like protein isoform 2 [Zea mays]
Length = 370
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 20 NGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-- 77
G N+ P+ A S N + KVFVG L D+T E R F +GTV + ++
Sbjct: 112 QGNQDNQYPMGNGTADSGDNVNYGSKKVFVGGLQDDTTEEEFRAYFETFGTVTDVAVIYD 171
Query: 78 ------RNYGFVHIDSPD-----INKCIKELNGMMVDGK 105
R +GFV DS + + + +LNG V+ K
Sbjct: 172 SATNRSRGFGFVTFDSEEAVGKVMRQSFHDLNGTKVEAK 210
>gi|224140195|ref|XP_002323470.1| predicted protein [Populus trichocarpa]
gi|222868100|gb|EEF05231.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 23/129 (17%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKI--------EAATSRKGPNTPTT-----KVFVGNL 52
M EE A K+ NG ++ + L++ E++ SR GP T +V+VGNL
Sbjct: 138 MTTIEEVEAASKQFNGYELDGRTLRVNFGPPPQKESSFSR-GPRGGETFDSGNRVYVGNL 196
Query: 53 SDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVD 103
S N + LF G V++ +V R +GFV S +++ I LNG +D
Sbjct: 197 SWNVDNLALETLFREKGRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVDNAIDSLNGAELD 256
Query: 104 GKPMKVVVA 112
G+ ++V VA
Sbjct: 257 GRAIRVSVA 265
>gi|428183055|gb|EKX51914.1| hypothetical protein GUITHDRAFT_84932 [Guillardia theta CCMP2712]
Length = 616
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT------TKVFVGNLSDNTRA 58
E EE AI ++NG ++ +K L + R G T T V+V N DN
Sbjct: 158 QFETAEEANEAISKVNGMLLEDKRLFVGPFIPR-GERESTNGERRFTNVYVKNFPDNVSD 216
Query: 59 PEVRELFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELNGM 100
+ R+ F YG + C I+R +GFV+ ++ D KC +E+NG
Sbjct: 217 DDFRKSFERYGEITSCKIMRKEDGTSKCFGFVNFKEADDAKKCCEEMNGQ 266
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 34/140 (24%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKG---------------PNTPT 44
E E+ R A+ E+NG+ +N K + K+E T K P +
Sbjct: 239 ERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKVEQVPQDIS 298
Query: 45 TK-----VFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINK 92
+ ++V NL D +R+ F P+GT+ + + +GFV SP + K
Sbjct: 299 VRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATK 358
Query: 93 CIKELNGMMVDGKPMKVVVA 112
+ E+NG +V KP+ V +A
Sbjct: 359 AVTEMNGRIVATKPLYVALA 378
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 61/117 (52%), Gaps = 14/117 (11%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 66
E+ A+ +N ++ KP++I S++ P+ + +FV NL + + + + F
Sbjct: 63 EDAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDRSIDSKALYDTFS 120
Query: 67 PYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM ++ + KV V F S
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDR--KVFVGRFKS 175
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E EE AI+++NG +N++ + + SR+ T V++ NL ++
Sbjct: 144 HFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
++ LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLQGLFSKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYV 263
>gi|198451057|ref|XP_002137212.1| GA27079, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|198131315|gb|EDY67770.1| GA27079, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 714
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 28 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE--CDIVRNYGFVHI 85
P+++ T G N +++VGNL+ + E+RE+F PYG + E +I +N+ F+ +
Sbjct: 299 PVEVPEETKFSGRN----RLYVGNLTGDITDNELREMFKPYGEIGEIFSNIEKNFTFLKV 354
Query: 86 D-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFI 128
D + K + L+G M G+ ++V A ++IL N+ F+
Sbjct: 355 DYHVNAEKAKRALDGTMRKGRQLRVRFAP-NATILRVRNLTPFV 397
>gi|413921822|gb|AFW61754.1| hypothetical protein ZEAMMB73_478558 [Zea mays]
Length = 131
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 16/124 (12%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR-------KGPNTPTTKVFVGNLSDNTRA 58
M EE AI+ + ++ + L + A+SR + P + +VGNL
Sbjct: 1 MSTVEEADKAIEMFSRYDISGRLLNVNRASSRGTRMERPQRQFAPAFRAYVGNLPWQVDD 60
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVH-IDSPDINKCIKELNGMMVDGKPMKV 109
+ +LF +G VV+ +V R +GFV + ++N I L+G +DG+P++V
Sbjct: 61 SRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQELDGRPLRV 120
Query: 110 VVAG 113
VA
Sbjct: 121 NVAA 124
>gi|303668381|gb|ADM16300.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 121
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 20/131 (15%)
Query: 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHID-SPDINK 92
+ K+FVG LS +T + E F YG + + D++R+ +GFV D + D
Sbjct: 2 SDEGKLFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKD 61
Query: 93 CIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCY 152
+ +NG VDG+ ++V A + G+GG+ RS G Y
Sbjct: 62 ALDGMNGKSVDGRTIRVDEA--GKGGGRSGGGGYRDNRGQGGYGD---------RSGGSY 110
Query: 153 CKSKSSHKIYQ 163
S S+ ++
Sbjct: 111 RDSYDSYAAHE 121
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 17/120 (14%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVREL 64
ND E A+ LN VN KP +I S++ P+ + +F+ NL + + +
Sbjct: 71 NDAE--RALDTLNFDPVNGKPCRI--MWSQRDPSLRRSGVGNIFIKNLEKDIDNKAIYDT 126
Query: 65 FVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C I + Y FVH ++ + N+ I+++NGM++ GK KV V F+S
Sbjct: 127 FSAFGNILSCKIALDENGNSKGYAFVHFETQEAANRAIEKVNGMLLSGK--KVFVGHFMS 184
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG +++ K + + SRK T ++V N D+
Sbjct: 153 HFETQEAANRAIEKVNGMLLSGKKVFVGHFMSRKERMEKIGNLAAKYTNLYVKNFRDDIS 212
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E R+LF G +V C ++R+ +GFV ++ + K ++ LN D + M V
Sbjct: 213 DDEFRDLFEQCGKIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVETLNEKEFDLRRMYV 272
Query: 110 VVA 112
A
Sbjct: 273 ARA 275
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVV-------ECDIVRNYGFVHIDSPD-INKCIKELN 98
++V NL D ++R+ F +GT+ E I R +GFV SP+ K + E+N
Sbjct: 305 LYVKNLDDVIDDAKLRQEFANFGTITSAKVMSDEKGISRGFGFVCFSSPEEATKAVTEMN 364
Query: 99 GMMVDGKPMKVVVA 112
G ++ KP+ V +A
Sbjct: 365 GRIIISKPLYVALA 378
>gi|223647416|gb|ACN10466.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 193
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHID-SPDINK 92
+ K+FVG LS +T + E F YG + + D++R+ +GFV D + D
Sbjct: 2 SDEGKLFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKD 61
Query: 93 CIKELNGMMVDGKPMKVVVA 112
++ +NG VDG+ ++V A
Sbjct: 62 ALEGMNGKSVDGRTIRVDEA 81
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFV 49
E EE + A+ +NG+ V + L + A R + + ++V
Sbjct: 302 EKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQGVNLYV 361
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D+ ++E+F YG + ++ + +GFV SP + K + E+NG +V
Sbjct: 362 KNLDDSINDERLKEVFSAYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIV 421
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 422 GTKPLYVALA 431
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E + AI +NG ++N++ + + SR+ T V+V NL +
Sbjct: 207 HFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNVYVKNLHMDMD 266
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++R+ +GFV+ + + K + +NG V G+ + V
Sbjct: 267 EQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVRGQLLYV 326
>gi|226491568|ref|NP_001142233.1| uncharacterized protein LOC100274401 [Zea mays]
gi|194707728|gb|ACF87948.1| unknown [Zea mays]
gi|414886903|tpg|DAA62917.1| TPA: hypothetical protein ZEAMMB73_604225 [Zea mays]
Length = 465
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 26/126 (20%)
Query: 9 DEEGRTAIKELNGQIVNEKPLKIEAATSRKG---------------------PNTPT-TK 46
+E+ R A+ E+NG +++ + ++I AA ++K N P T
Sbjct: 262 NEQAR-AMTEMNGMLLSTRQMRIGAAANKKNRDAQQTYATDGAYQSSKGNSSENDPNNTT 320
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTV--VECDIVRNYGFVHIDSPD-INKCIKELNGMMVD 103
VFVG L N +R++F PYG + V+ + ++ GFV S + I+ LNG V
Sbjct: 321 VFVGGLDSNVNEEYLRQIFTPYGEISYVKIPVGKHCGFVQFTSRSCAEEAIRMLNGSQVG 380
Query: 104 GKPMKV 109
G+ +++
Sbjct: 381 GQKVRL 386
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKE 96
+++ NL D+ ++ ELF +GTV C I+R+ GFV +P + + + E
Sbjct: 306 ANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAE 365
Query: 97 LNGMMVDGKPMKVVVA 112
+NG MV GKP+ V A
Sbjct: 366 MNGKMVAGKPLYVAPA 381
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 12/93 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-----PNTPTTKVFVGNLSDNTRAP 59
EN+E ++AI +LNG ++N+KP+ + ++ N V+V NLS++
Sbjct: 158 QFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDD 217
Query: 60 EVRELFVPYGTVVECDIVRN-------YGFVHI 85
+++ F YGT+ ++R+ +GFV+
Sbjct: 218 DLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNF 250
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEV 61
+ N + A+ LN +N KP++I S + P+ + +F+ NL +
Sbjct: 71 NFSNPHDAAKAMDVLNFTPLNNKPIRI--MYSHRDPSVRKSGAANIFIKNLDRAIDHKAL 128
Query: 62 RELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+ F +G ++ C I + YGFV ++ + I +LNGM+++ KP+ V
Sbjct: 129 YDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYV 184
>gi|195143885|ref|XP_002012927.1| GL23854 [Drosophila persimilis]
gi|194101870|gb|EDW23913.1| GL23854 [Drosophila persimilis]
Length = 715
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 28 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE--CDIVRNYGFVHI 85
P+++ T G N +++VGNL+ + E+RE+F PYG + E +I +N+ F+ +
Sbjct: 300 PVEVPEETKFSGRN----RLYVGNLTGDITDNELREMFKPYGEIGEIFSNIEKNFTFLKV 355
Query: 86 D-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFI 128
D + K + L+G M G+ ++V A ++IL N+ F+
Sbjct: 356 DYHVNAEKAKRALDGTMRKGRQLRVRFAP-NATILRVRNLTPFV 398
>gi|2330647|emb|CAA74889.1| ribonucleoprotein [Pisum sativum]
gi|10179830|gb|AAG13900.1| 33 kDa ribonucleoprotein [Pisum sativum]
Length = 291
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNT----------PTTKVFVGNLSDN 55
M EE + N N +PL + A R P +V+VGNLS
Sbjct: 157 MSTVEEAEAGAAKFNRYDYNGRPLTVNKAAPRGSRPEREERPPRTFEPVLRVYVGNLSWE 216
Query: 56 TRAPEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKP 106
+ ++F +G VV +V R +GFV + D ++N I L+G +++G+
Sbjct: 217 LDDSRLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEKEMNDAIAALDGQILEGRT 276
Query: 107 MKVVVA 112
+KV VA
Sbjct: 277 IKVSVA 282
>gi|431894424|gb|ELK04224.1| Polyadenylate-binding protein 1-like protein [Pteropus alecto]
Length = 512
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 26/134 (19%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK------------------ 46
+ E EE + A+ ++NG+ V + L + A R +
Sbjct: 242 NFEKHEEAQKAVMDMNGKEVRGRLLYVGRAQKRMERQNELKRKFEQMKQDRLNRYHVRGV 301
Query: 47 -VFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELN 98
++V NL D+ ++R+ F PYG + ++ + +GFV SP + K + E+N
Sbjct: 302 NLYVKNLDDSINDEKLRKEFSPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 361
Query: 99 GMMVDGKPMKVVVA 112
G +V KP+ V +A
Sbjct: 362 GRIVGTKPLYVALA 375
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +++ +P++I S++ P + +F+ NL D+ + + F
Sbjct: 64 DAERALDTMNFEVIKGQPIRI--MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFST 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V R +GFVH ++ + + I +NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDDHGSRGFGFVHFETHEAAQLAISTMNGMLLNDR--KVFVGHFKS 175
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 15/117 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFV 66
++G A++ELN ++ KP +I S++ P T VF+ NL + + F
Sbjct: 109 DDGEKALEELNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFA 166
Query: 67 PYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V I
Sbjct: 167 AFGNILSCKVAQDENGNSKGYGFVHYETAEAANNAIKAVNGMLLNEK--KVFVGHHI 221
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 16/110 (14%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSDNTR 57
H E E AIK +NG ++NEK + K + + + T V+V N+
Sbjct: 191 HYETAEAANNAIKAVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNVYVKNIDLEVT 250
Query: 58 APEVRELFVPYGTVVECDIV--------RNYGFVH-IDSPDINKCIKELN 98
E RELF YG + + R +GFV+ + K + ELN
Sbjct: 251 DDEFRELFEKYGQITSASLAHDNETGKSRGFGFVNFVKHESAAKAVDELN 300
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H EN+E R AI +NG ++N + + + S+K + T V+V NL
Sbjct: 177 HFENEEAAREAIDAINGMLLNGQEVYVAPHVSKKDRQSKLDEARANFTNVYVKNLDLEAT 236
Query: 58 APEVRELFVPYGTVVECDI-------VRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+ LF PYGT+ + R +GFV ++ D K ++ LN G+ + V
Sbjct: 237 EEDFENLFKPYGTITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEALNDTEYKGQTLYV 296
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 16/105 (15%)
Query: 16 IKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 75
++EL Q + K+E +G N +F+ NL D+ +++E F P+GT+
Sbjct: 306 LQELKKQY---QASKLEKLAKYQGIN-----LFIKNLDDSIDDEKLKEEFAPFGTITSAR 357
Query: 76 IVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
++R +GFV +P + + I E N +V GKP+ V +A
Sbjct: 358 VMRTENGKSKGFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIA 402
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 20/123 (16%)
Query: 8 NDEE-GRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAPEV 61
ND E G+TAI++LN + +P +I + + +KG + +F+ NL + +
Sbjct: 92 NDHEAGKTAIEKLNYTAIKGRPCRIMWSQRDPSMRKKG----SGNIFIKNLHPDIDNKTL 147
Query: 62 RELFVPYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAG 113
E F +G ++ C I + +GFVH ++ + + I +NGM+++G+ +V VA
Sbjct: 148 YETFSVFGNILSCKIANDETGKSKGFGFVHFENEEAAREAIDAINGMLLNGQ--EVYVAP 205
Query: 114 FIS 116
+S
Sbjct: 206 HVS 208
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 30 KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGF 82
K+E + + ++V NL+D +R+LF GT+ C ++++ +GF
Sbjct: 289 KVEESKQERYLKYQGMNLYVKNLADEVDDDALRDLFTSCGTITSCKVMKDTSGKSKGFGF 348
Query: 83 VHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
V S D + + E+NG MV GKP+ V +A
Sbjct: 349 VCFTSHDEATRAVTEMNGKMVKGKPLYVALA 379
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 13/107 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 66
+ A++ LN ++N KP++I S + P+ + +F+ NL + A + + F
Sbjct: 76 QAAERAMETLNYHVLNGKPMRI--MWSHRDPSARKSGVGNIFIKNLDKSIDAKALHDTFS 133
Query: 67 PYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGK 105
+G ++ C + + YGFVH D ++ I+ +N ++GK
Sbjct: 134 AFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGK 180
>gi|302852020|ref|XP_002957532.1| hypothetical protein VOLCADRAFT_84128 [Volvox carteri f.
nagariensis]
gi|300257174|gb|EFJ41426.1| hypothetical protein VOLCADRAFT_84128 [Volvox carteri f.
nagariensis]
Length = 386
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKEL 97
K++V NL+ +V++LF P+G + +VR+ YG+V + + D K ++
Sbjct: 116 KLYVANLNAAIAEADVQQLFAPFGQIDNVQLVRDATGRSQGYGYVTYANVLDATKAVEHW 175
Query: 98 NGMMVDGKPMKVVVAGFISSI--LSCLNVIFFIRCGRGGHWSKECPRAG 144
NG +V G +KV V+ S I + +RC R G +E R G
Sbjct: 176 NGRVVAGSALKVSVSSKGSCIRFFGITRTVLLLRC-RVGELDEEEARGG 223
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFV 49
E E+ + A+ E+NG+ +N K + + A + T + ++V
Sbjct: 239 ERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
+++++F YG + ++ R +GFV + D + + E+NG ++GK
Sbjct: 204 DDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGK 259
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGRPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 24/132 (18%)
Query: 5 HMENDEEGRTAIKELNGQIV-----------------NEKPLKIEAATSRKGPNTPTTKV 47
+ E EE + A+ ++NG+ V NE + E + +
Sbjct: 237 NFEKHEEAQKAVTDMNGKEVRGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNL 296
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGM 100
+V NL D+ ++R F PYG + ++ + +GFV SP + K + E+NG
Sbjct: 297 YVKNLDDSIDDEKLRREFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 101 MVDGKPMKVVVA 112
+V KP+ V +A
Sbjct: 357 IVGTKPLYVALA 368
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +++ +P++I S++ P + +F+ NL D+ + + F
Sbjct: 64 DAERALDTMNFEVIRGQPIRI--MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFST 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V R +GFVH ++ + + I +NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDNHGSRGFGFVHFETHEAAQQAIVTMNGMLLNDR--KVFVGHFKS 175
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E + AI +NG ++N++ + + SR+ T ++V NL +
Sbjct: 144 HFETHEAAQQAIVTMNGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G ++ ++R+ +GFV+ + + K + ++NG V G+ + V
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVTDMNGKEVRGRLLYV 263
>gi|390177481|ref|XP_003736389.1| GA27079, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859061|gb|EIM52462.1| GA27079, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 698
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 28 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE--CDIVRNYGFVHI 85
P+++ T G N +++VGNL+ + E+RE+F PYG + E +I +N+ F+ +
Sbjct: 299 PVEVPEETKFSGRN----RLYVGNLTGDITDNELREMFKPYGEIGEIFSNIEKNFTFLKV 354
Query: 86 D-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFI 128
D + K + L+G M G+ ++V A ++IL N+ F+
Sbjct: 355 DYHVNAEKAKRALDGTMRKGRQLRVRFAP-NATILRVRNLTPFV 397
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.140 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,159,878,448
Number of Sequences: 23463169
Number of extensions: 284355723
Number of successful extensions: 1127083
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 5629
Number of HSP's that attempted gapping in prelim test: 1111450
Number of HSP's gapped (non-prelim): 20814
length of query: 346
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 203
effective length of database: 9,003,962,200
effective search space: 1827804326600
effective search space used: 1827804326600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)