BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16419
(346 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94901|LARK_DROME RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1
SV=1
Length = 352
Score = 174 bits (441), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 86/140 (61%), Positives = 104/140 (74%), Gaps = 2/140 (1%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HME +++GR AI+ LNG +NE +K+EAA SR+ PNTPTTK+FVGNL+D TRAPEVREL
Sbjct: 46 HMETEQQGRDAIQNLNGYTLNEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVREL 105
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YGTVVECDIVRNYGFVH+D D+ IKELNG +VDG+P+KV V+ +
Sbjct: 106 FQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMG 165
Query: 123 NVIFFIRCGRGGHWSKECPR 142
+ RCGR GHWSKECPR
Sbjct: 166 DPEQCYRCGRSGHWSKECPR 185
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELN 98
P T K+F+GNL + T+A E+R LF YGTVVECD+V+NYGFVH+++ + I+ LN
Sbjct: 2 PGAGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLN 61
Query: 99 GMMVDGKPMKVVVA 112
G ++ +KV A
Sbjct: 62 GYTLNEFAIKVEAA 75
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 36/48 (75%), Gaps = 3/48 (6%)
Query: 299 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MPG GTFK+FIGN++ T +R LFEKYG VVECDVVKNYGFV
Sbjct: 1 MPG---AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFV 45
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 291 VVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+ +EA + T KIF+GN+ T +R LF+KYG VVECD+V+NYGFV
Sbjct: 69 AIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFV 124
>sp|Q6IQ97|RBM41_DANRE RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 PE=1 SV=1
Length = 419
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 7/147 (4%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ E AI+ L+ ++N + +E + KG +TK+ VGN+S + E+R
Sbjct: 41 HMDSKSEADEAIQNLHHYMLNGMAMNVEMS---KGKPKTSTKLHVGNISSSCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG VVECDIV++Y FVH++ D + I L+ GK M V ++ + +
Sbjct: 98 FEEYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAFQGKLMSVKLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP--RAGNFR 147
RCG+ GHWSKECP + G++R
Sbjct: 158 ERTGCYRCGQEGHWSKECPLDQNGSYR 184
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+FVGNLS NT A E+R LF YG + ECDIV+N+GFVH+DS + ++ I+ L+ M++G
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62
Query: 105 KPMKVVVA 112
M V ++
Sbjct: 63 MAMNVEMS 70
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 32/38 (84%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GN++P T+ E IR LF +YGK+ ECD+VKN+GFV
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFV 40
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+ +GN++ + + +R FE+YG VVECD+VK+Y FV
Sbjct: 79 KLHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFV 116
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=1 SV=1
Length = 361
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>sp|Q4R979|RBM4_MACFA RNA-binding protein 4 OS=Macaca fascicularis GN=RBM4 PE=2 SV=1
Length = 364
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1 SV=1
Length = 364
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>sp|Q3MHX3|RBM4_BOVIN RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 SV=1
Length = 362
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKTSTKLHV 82
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>sp|Q06AT9|RBM4B_PIG RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2 SV=1
Length = 359
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1
Length = 359
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>sp|Q9BQ04|RBM4B_HUMAN RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1
Length = 359
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>sp|Q64LC9|RBM4B_RAT RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2
Length = 357
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>sp|Q8VE92|RBM4B_MOUSE RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE=1 SV=1
Length = 357
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKVVVAGFISSILSCLNV 124
+ V + S + L+V
Sbjct: 63 VNINVEASKNKSKASTKLHV 82
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>sp|Q10667|RNP1_CAEEL RNA-binding protein rnp-1 OS=Caenorhabditis elegans GN=rnp-1 PE=2
SV=1
Length = 305
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDG 104
+K+FVGNL DN + +++++F P+ V ECDIV+NY FVHI+ D++ I L G +DG
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIEEDDVDPIITRLTGYTIDG 62
Query: 105 KPMKVVVA-GFISSILSCLNVIFFIRCGRGGHWSKECPR 142
K + + + + N F RC H + +CP+
Sbjct: 63 KVVNIKKSTSKLRPTPGMPNRCF--RCQSDEHRTPQCPQ 99
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+F+GN+ ++ +F+ + KV ECD+VKNY FV
Sbjct: 4 KLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFV 41
>sp|Q8C2Q3|RBM14_MOUSE RNA-binding protein 14 OS=Mus musculus GN=Rbm14 PE=1 SV=1
Length = 669
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
Score = 38.9 bits (89), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 308 FKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GNV+ T+ E + LF YG V+ C V+K + FV
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFV 40
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAAT--SRKGP 40
HME + + + AI +LNG+ V K + +E +T +KGP
Sbjct: 118 HMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGP 155
>sp|Q96PK6|RBM14_HUMAN RNA-binding protein 14 OS=Homo sapiens GN=RBM14 PE=1 SV=2
Length = 669
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
Score = 38.9 bits (89), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 308 FKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GNV+ T+ E + LF YG V+ C V+K + FV
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFV 40
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAAT--SRKGP 40
HME + + + AI +LNG+ V K + +E +T +KGP
Sbjct: 118 HMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGP 155
>sp|Q5RC41|RBM14_PONAB RNA-binding protein 14 OS=Pongo abelii GN=RBM14 PE=2 SV=1
Length = 669
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
Score = 38.9 bits (89), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 308 FKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GNV+ T+ E + LF YG V+ C V+K + FV
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFV 40
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAAT--SRKGP 40
HME + + + AI +LNG+ V K + +E +T +KGP
Sbjct: 118 HMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGP 155
>sp|Q5EA36|RBM14_BOVIN RNA-binding protein 14 OS=Bos taurus GN=RBM14 PE=2 SV=1
Length = 669
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G ++ + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVE--MSRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVD 103
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL- 60
Query: 104 GKPMKVVV 111
+P + +V
Sbjct: 61 -RPGRALV 67
Score = 38.9 bits (89), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 308 FKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GNV+ T+ E + LF YG V+ C V+K + FV
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFV 40
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAAT--SRKGP 40
HME + + + AI +LNG+ V K + +E +T +KGP
Sbjct: 118 HMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGP 155
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN-------TPTTKVFVGNLSDNTRA 58
M EE A++ LNG ++ + L + A R P P+ +V+VGNL +
Sbjct: 103 MSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDT 162
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 109
+ +LF +G VV +V R +GFV + S ++N I L+G +DG+ ++V
Sbjct: 163 SRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRV 222
Query: 110 VVA 112
VA
Sbjct: 223 NVA 225
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVV--------ECDIVRNYGFVHIDS-PDINKCIK 95
K+FVGNL + + ++ +F G V E D R +GFV + + + K ++
Sbjct: 55 AKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 114
Query: 96 ELNGMMVDGKPMKV 109
LNG +DG+ + V
Sbjct: 115 LLNGYDMDGRQLTV 128
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 24/129 (18%)
Query: 8 NDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVG 50
N EE + A+ E+NG+ VN +K ++ ++ RK ++ +V
Sbjct: 240 NHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVK 299
Query: 51 NLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVD 103
NL D +R+ F+PYGT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 300 NLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVS 359
Query: 104 GKPMKVVVA 112
KP+ V +A
Sbjct: 360 TKPLYVALA 368
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +++ +P++I S++ P + VF+ NL ++ + + F
Sbjct: 64 DAERALDTMNFEVIKGRPIRI--MWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V R YGFVH ++ + N+ I+ +NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDR--KVFVGHFKS 175
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+ +NG ++N++ + + SR+ T V++ N ++
Sbjct: 144 HFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGK 105
+RE+F +G + ++ R +GFV+ + + K + E+NG V+G+
Sbjct: 204 DKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGR 259
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/81 (18%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 39 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 89
G P +++G+L + + E F P G ++ + R+ Y +++ P D
Sbjct: 5 GAGYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPAD 64
Query: 90 INKCIKELNGMMVDGKPMKVV 110
+ + +N ++ G+P++++
Sbjct: 65 AERALDTMNFEVIKGRPIRIM 85
>sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana
GN=RS2Z33 PE=1 SV=1
Length = 290
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 22/130 (16%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG LS TR ++ LF YG V + D+ R+Y FV P D + L+G
Sbjct: 10 NTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDF 69
Query: 103 DGKPMKVVVA-------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSS 149
DG + V + G C N CG GHW+++C AG++++
Sbjct: 70 DGSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFN------CGVDGHWARDCT-AGDWKNK 122
Query: 150 GCYCKSKSSH 159
CY + H
Sbjct: 123 -CYRCGERGH 131
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 299 MPGFSS-VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MP + G ++++G ++ T + LF +YG+V + D+ ++Y FV
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFV 49
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 24/129 (18%)
Query: 8 NDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVG 50
N EE + A+ E+NG+ VN +K ++ + RK ++ +V
Sbjct: 240 NHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVK 299
Query: 51 NLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVD 103
NL D +R+ F PYGT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 300 NLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVS 359
Query: 104 GKPMKVVVA 112
KP+ V +A
Sbjct: 360 TKPLYVALA 368
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +++ +P++I S++ P + VF+ NL ++ + + F
Sbjct: 64 DAERALDTMNFEVIKGRPIRI--MWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V R YGFVH ++ + N+ I+ +NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDR--KVFVGHFKS 175
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+ +NG ++N++ + + SR+ T V++ N ++
Sbjct: 144 HFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGK 105
+RE+F +G + ++ R +GFV+ + + K + E+NG V+G+
Sbjct: 204 DKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGR 259
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 39 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 89
G P ++VG+L + + E F P G ++ + R+ Y +++ P D
Sbjct: 5 GAGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPAD 64
Query: 90 INKCIKELNGMMVDGKPMKVV 110
+ + +N ++ G+P++++
Sbjct: 65 AERALDTMNFEVIKGRPIRIM 85
>sp|Q04047|NONA_DROME Protein no-on-transient A OS=Drosophila melanogaster GN=nonA PE=1
SV=2
Length = 700
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
Query: 16 IKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE-- 73
++ ++G +P+++ T G N +++VGNL+++ E+RE+F PYG + E
Sbjct: 277 LRSISGPTFELEPVEVPTETKFSGRN----RLYVGNLTNDITDDELREMFKPYGEISEIF 332
Query: 74 CDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFI 128
++ +N+ F+ +D P+ K + L+G M G+ ++V A ++IL N+ F+
Sbjct: 333 SNLDKNFTFLKVDYHPNAEKAKRALDGSMRKGRQLRVRFAP-NATILRVSNLTPFV 387
>sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana
GN=RS2Z32 PE=1 SV=1
Length = 284
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 22/123 (17%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMV 102
T+++VG LS TR ++ LF YG V + D+ R+Y FV P D + L+G
Sbjct: 10 NTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDF 69
Query: 103 DGKPMKVVVA-------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSS 149
DG + V + G C N CG GHW+++C AG++++
Sbjct: 70 DGSRITVEASRGAPRGSRDNGSRGPPPGSGRCFN------CGVDGHWARDCT-AGDWKNK 122
Query: 150 GCY 152
CY
Sbjct: 123 -CY 124
Score = 35.8 bits (81), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 299 MPGFSS-VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MP + G ++++G ++ T + LF +YG+V + D+ ++Y FV
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFV 49
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 24/129 (18%)
Query: 8 NDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FVG 50
N EE + A+ E+NG+ VN +K ++ + RK ++ +V
Sbjct: 240 NHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVK 299
Query: 51 NLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMVD 103
NL D +R+ F PYGT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 300 NLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVS 359
Query: 104 GKPMKVVVA 112
KP+ V +A
Sbjct: 360 TKPLYVALA 368
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N +++ +P++I S++ P + VF+ NL D+ + + F
Sbjct: 64 DAERALDTMNFEVIKGRPIRI--MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V R YGFVH ++ + N+ I+ +NGM+++ + KV V F S
Sbjct: 122 FGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDR--KVFVGHFKS 175
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+ +NG ++N++ + + SR+ T V++ N ++
Sbjct: 144 HFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHI-DSPDINKCIKELNGMMVDGK 105
++E+F +G + ++ R +GFV+ + + K + E+NG V+G+
Sbjct: 204 DKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGR 259
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVN---------EKPLKIEAATSRKGPNTPTTKV--------FV 49
E E+ A++E+NG+ ++ +K ++ +A RK ++ ++
Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMV 102
NL D ++R+ F P+G++ ++ + +GFV SP+ K + E+NG +V
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 GSKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + VF+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + Y FVH ++ + +K I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKS 175
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 93
P ++VG+L + + E F P G V+ + R+ Y +V+ P D +
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 94 IKELNGMMVDGKPMKVV 110
+ +N ++ GKP++++
Sbjct: 69 LDTMNFDVIKGKPIRIM 85
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 32 EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVH 84
EAA + K +++ N+ ++ +RE F P+G + C I+ R +GFV
Sbjct: 317 EAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVC 376
Query: 85 IDSP-DINKCIKELNGMMVDGKPMKVVVA 112
+P + NK + E+NG M+D +P+ V +A
Sbjct: 377 YSAPEEANKAVSEMNGKMLDNRPLYVALA 405
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ +P +I S++ P T +F+ NL + +
Sbjct: 97 NAADGERAMEQLNYSLIRNRPCRI--MWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDT 154
Query: 65 FVPYGTVVECDIVRN------YGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFI 115
F +G ++ C + N YGFVH ++ IK +NGM+++ K KV V I
Sbjct: 155 FAAFGNILSCKVATNETGSLGYGFVHYETAEAAEAAIKHVNGMLLNDK--KVYVGHHI 210
Score = 35.8 bits (81), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 15/123 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + RK T V+ N+
Sbjct: 180 HYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVT 239
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELNGMMVDGKPMKV 109
E +LF +G + C + R+ +GFV+ D + K + EL+ G+ + V
Sbjct: 240 DDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFV 299
Query: 110 VVA 112
A
Sbjct: 300 ARA 302
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 15/117 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFV 66
E+G A++ELN ++ KP +I S++ P T VF+ NL + + F
Sbjct: 100 EDGEKALEELNYTVIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFA 157
Query: 67 PYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFI 115
+G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V I
Sbjct: 158 AFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEK--KVFVGHHI 212
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSDNTR 57
H E E AIK +NG ++NEK + K E + + T ++V N+ +
Sbjct: 182 HYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVT 241
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
+ RELF +G + I R+ +GFV +I + LN + G+ + V
Sbjct: 242 DEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYV 301
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 30 KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV 77
+ EAA K +++ NL+D+ ++R++F P+GT+ ++
Sbjct: 317 QYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVI 364
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 35 TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHID 86
T+ + + + ++VG L + + ELF G V + R+ Y +V+ +
Sbjct: 38 TAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYN 97
Query: 87 S-PDINKCIKELNGMMVDGKPMKVV 110
S D K ++ELN ++ GKP +++
Sbjct: 98 SSEDGEKALEELNYTVIKGKPCRIM 122
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 78 RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
+ +GFV +PD K + E+N M++GKP+ V +A
Sbjct: 425 KGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALA 460
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H EN+ + R AI+ ++G ++N++ + + S+K + T V+V N+ T
Sbjct: 172 HFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETS 231
Query: 58 APEVRELFVPYG----TVVECDI---VRNYGFVHI-DSPDINKCIKELNGMMVDGKPMKV 109
E ELF YG V+E D +R +GFV+ D K + ELN + G+ + V
Sbjct: 232 QEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYV 291
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 24 VNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN---- 79
+ E + EAA K +FV NL D+ +++E F P+GT+ ++R+
Sbjct: 301 LQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGN 360
Query: 80 ---YGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
+GFV +P + K I E N +V GKP+ V +A
Sbjct: 361 SRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----EAATSRKGPNTPTTKVFVGNLSDNTRAP 59
+ + E G AI++LN ++ KP +I + + +KG + +++ NL
Sbjct: 85 NFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKG----SGNIYIKNLHPAIDNK 140
Query: 60 EVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVV 111
+ E F +G ++ C + R +GFVH ++ D I+ ++GM+++ + + V +
Sbjct: 141 SLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVAL 200
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----------------EAATSRKGPNTPTTKV 47
+ EN E A+KE+N + ++ + L + E+ K +
Sbjct: 285 NFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNL 344
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNG 99
FV NL D+ + ++ E F P+GT+ ++ + +GFV SP + K I E+N
Sbjct: 345 FVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQ 404
Query: 100 MMVDGKPMKVVVA 112
M+ GKP+ V +A
Sbjct: 405 RMIQGKPLYVALA 417
Score = 35.0 bits (79), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 19 LNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTRAPEVRELFVPYGTV 71
+NG ++N++ + + S++ + T V+V NL+ + E+F P+G V
Sbjct: 206 VNGMLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPV 265
Query: 72 VECDI-------VRNYGFVHIDSPDIN-KCIKELNGMMVDGKPMKVVVAGFISSILSCLN 123
+ R +GFV+ ++ + +KE+N +DG+ + V A L L
Sbjct: 266 TSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELK 325
Query: 124 VIF 126
++
Sbjct: 326 RLY 328
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDS-PDINKCIKEL 97
++VG L+ + + E+F P G V + R+ Y +V+ D ++ I+EL
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 98 NGMMVDGKPMKVV 110
N +VDG+P +++
Sbjct: 120 NYSLVDGRPCRIM 132
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 25/131 (19%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFV 49
EN E R A+ ELN + VN K L A ++ K ++V
Sbjct: 275 ENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYV 334
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMM 101
NL D +R F +GT+ ++R+ +GFV SPD K + E+NG M
Sbjct: 335 KNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKM 394
Query: 102 VDGKPMKVVVA 112
+ KP+ V +A
Sbjct: 395 IGTKPLYVALA 405
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSDNTR 57
H E AIK +NG ++N+K + K E + + T V++ N+
Sbjct: 180 HYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVT 239
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPM 107
E +L P+G + + R+ +GFV+ ++ + K + ELN V+GK +
Sbjct: 240 DAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKL 297
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A++ LN ++ + +I S++ P T +F+ NL + + +
Sbjct: 96 NAADGERALEHLNYSLIKGQSCRI--MWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDT 153
Query: 65 FVPYGTVVECDI-------VRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
F +G ++ C + R + FVH + + + IK +NGM+++ K + V
Sbjct: 154 FAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYV 206
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 25/131 (19%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK-----------------VFV 49
EN E R A+ ELN + VN K L A ++ K ++V
Sbjct: 275 ENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYV 334
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMM 101
NL D +R F +GT+ ++R+ +GFV SPD K + E+NG M
Sbjct: 335 KNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKM 394
Query: 102 VDGKPMKVVVA 112
+ KP+ V +A
Sbjct: 395 IGTKPLYVALA 405
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPL-------KIEAATSRKGPNTPTTKVFVGNLSDNTR 57
H E AIK +NG ++N+K + K E + + T V++ N+
Sbjct: 180 HYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVT 239
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPM 107
E +L P+G + + R+ +GFV+ ++ + K + ELN V+GK +
Sbjct: 240 DAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKL 297
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A++ LN ++ + +I S++ P T +F+ NL + + +
Sbjct: 96 NAADGERALEHLNYSLIKGQSCRI--MWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDT 153
Query: 65 FVPYGTVVECDI-------VRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
F +G ++ C + R + FVH + + + IK +NGM+++ K + V
Sbjct: 154 FAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYV 206
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F+P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI ++NG ++N++ + + SRK T V++ N D+
Sbjct: 144 HFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMN 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++E+F YG + ++ + +GFV + D K + E+NG ++GK M V
Sbjct: 204 DERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV 263
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ +P++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGRPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I ++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDR--KVFVGRFKS 175
Score = 35.0 bits (79), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 39 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 89
P+ P ++VG+L + + E F P G ++ + R+ Y +V+ P D
Sbjct: 5 APSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 90 INKCIKELNGMMVDGKPMKVV 110
+ + +N ++ G+P++++
Sbjct: 65 AERALDTMNFDVIKGRPVRIM 85
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E DE AIK +NG ++NEK + + +K + T V+V N+++
Sbjct: 194 HYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVT 253
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E RELF +G V + R+ +GFV+ + + + + ELNG G+ + V
Sbjct: 254 DEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYV 313
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 57/110 (51%), Gaps = 13/110 (11%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 67
+G A++ELN ++ +P +I S++ P T +F+ NL + + F
Sbjct: 113 DGEKALEELNYTLIKGRPCRI--MWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAA 170
Query: 68 YGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
+G ++ C + ++ YGFVH ++ + ++ IK +NGM+++ K + V
Sbjct: 171 FGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV 220
Score = 35.8 bits (81), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 56/169 (33%), Gaps = 66/169 (39%)
Query: 10 EEGRTAIKELNGQIVNEKPLKI-----------------EAATSRKGPNTPTTKVFVGNL 52
E A+ ELNG+ + L + EAA K +++ NL
Sbjct: 292 EAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNL 351
Query: 53 SDNTRAPEVRELFVPYGTVVECDIVRN--------------------------------- 79
D+ ++R +F YG + ++R+
Sbjct: 352 GDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEK 411
Query: 80 ---------------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
+GFV +PD K + E+N MVDGKP+ V +A
Sbjct: 412 KTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALA 460
>sp|Q9U1N0|HRP65_CHITE Hrp65 protein OS=Chironomus tentans GN=HRP65 PE=1 SV=1
Length = 535
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVEC--DIVRNYGFVHID-SPDINKCIKELNGMM 101
++++GNL+ + E++ELF PYG + E + +N+ F+ ID + + K+L+G M
Sbjct: 113 NRLYIGNLTSDVTEEELKELFSPYGEISEAFINAEKNFAFLKIDYRANAERAKKDLDGRM 172
Query: 102 VDGKPMKVVVAGFISSI 118
KP+++ A ++I
Sbjct: 173 RKNKPIRIRFAPNATTI 189
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVF-----------------V 49
E E+ + A+ E+NG+ +N K + + A + T + F V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ ++ ++ A+ +N ++ KP++I S++ P+ + +FV NL + +
Sbjct: 58 NFQHTKDAEHALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDKSINNKAL 115
Query: 62 RELFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGF 114
+ +G ++ C++V + YGFVH ++ + + IK++NGM+++G+ KV V F
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR--KVFVGQF 173
Query: 115 IS 116
S
Sbjct: 174 KS 175
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AIK++NG ++N + + + SRK V++ N ++
Sbjct: 144 HFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR--------NYGFVHID-SPDI 90
P+ PT ++VG+L + + E F P G ++ I R NY +V+ + D
Sbjct: 6 PSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDA 65
Query: 91 NKCIKELNGMMVDGKPMKVV 110
+ +N ++ GKP++++
Sbjct: 66 EHALDTMNFDVIKGKPVRIM 85
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRA 58
M + +E TA+++ N +N + L + A R + P P +V+VGNL +
Sbjct: 198 MSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDN 257
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKV 109
+ +LF +G VVE +V R +GFV + D ++N+ I L+G ++G+ ++V
Sbjct: 258 GRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
Query: 110 VVA 112
VA
Sbjct: 318 NVA 320
>sp|Q60990|RBY1B_MOUSE RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus
musculus GN=Rbmy1b PE=2 SV=3
Length = 380
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVV--------ECDIVRNYGFVHIDSP-DINKCIKE 96
K+F+G L+ TR ++E+F +G V E R + F+ P D +KE
Sbjct: 9 KIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKNAVKE 68
Query: 97 LNGMMVDGKPMKVVVAGFISSILS-----------CLNVIFFIRCGRGGH 135
+NG+++DGK +KV A SS+ S ++CGRGG
Sbjct: 69 MNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGR 118
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ KP +I S++ P T VF+ NL + +
Sbjct: 104 NTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 161
Query: 65 FVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 219
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 17/106 (16%)
Query: 10 EEGRTAIKELNGQIVNEKPL-----------------KIEAATSRKGPNTPTTKVFVGNL 52
E + A++E+N + + + L + EAA K ++V NL
Sbjct: 286 ESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNL 345
Query: 53 SDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELN 98
+D+ ++RELF PYGT+ ++R+ SPD KE +
Sbjct: 346 TDDIDDEKLRELFGPYGTITSAKVMRDTNVERDQSPDSAGKEKEAD 391
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + S+K + T V++ NL
Sbjct: 188 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEID 247
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELN 98
E R++F +G + + R+ +GFV+ + + ++E+N
Sbjct: 248 DDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMN 296
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 78 RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
+ +GFV SPD +K + E+N MV+GKP+ V +A
Sbjct: 435 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALA 470
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ KP +I S++ P T VF+ NL + +
Sbjct: 99 NTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 156
Query: 65 FVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 157 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 214
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 30 KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPD 89
+ EAA K ++V NL+D+ ++RELF PYGT+ ++R+ +P+
Sbjct: 318 QYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDTNIERTQTPE 377
Query: 90 INK 92
+K
Sbjct: 378 SDK 380
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + S+K + T V++ N+ +
Sbjct: 183 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVT 242
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELN 98
E RELF +G + + R+ +GFV+ + + + E+N
Sbjct: 243 EEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMN 291
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 78 RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
+ +GFV SPD +K + E+N MV+GKP+ V +A
Sbjct: 433 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALA 468
>sp|Q9GRX4|NONA_DROLR Protein no-on-transient A OS=Drosophila littoralis GN=nonA PE=2
SV=1
Length = 698
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 8/104 (7%)
Query: 28 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE--CDIVRNYGFVHI 85
P+++ T G N +++VGNL+++ E+RE+F PYG + E ++ +N+ F+ +
Sbjct: 268 PIEVAQETKFSGRN----RLYVGNLTNDITDEELREMFKPYGEIGEIFSNLEKNFTFLKV 323
Query: 86 D-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFI 128
D + K + L+G M G+ ++V A ++IL N+ F+
Sbjct: 324 DYHINAEKAKRALDGSMRKGRQLRVRFAP-NATILRVSNLTPFV 366
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ KP +I S++ P T VF+ NL + +
Sbjct: 98 NTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 155
Query: 65 FVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 156 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 213
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + S+K + T V++ NL
Sbjct: 182 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEIS 241
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E R++F +G + + R+ +GFV+ + D + E+N V G+ + V
Sbjct: 242 EEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYV 301
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 30 KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP 88
+ EAA K ++V NL+D+ ++RE+F PYGT+ ++R+ +P
Sbjct: 317 QYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKVMRDTNIERTQTP 375
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 78 RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
+ +GFV SPD +K + E+N M++GKP+ V +A
Sbjct: 423 KGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALA 458
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ KP +I S++ P T VF+ NL + +
Sbjct: 102 NTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 65 FVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 217
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + S+K + T V++ N+
Sbjct: 186 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVT 245
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E R++F +G + + R+ +GFV+ + D + E+N + G+ + V
Sbjct: 246 DEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYV 305
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 30 KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN 79
+ EAA K ++V NL+D+ ++RELF P+GT+ ++R+
Sbjct: 321 QYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRD 370
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 78 RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
+ +GFV SPD +K + E+N MV+GKP+ V +A
Sbjct: 423 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALA 458
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ KP +I S++ P T VF+ NL + +
Sbjct: 101 NTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 158
Query: 65 FVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 159 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 216
Score = 38.5 bits (88), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 30 KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH-IDSP 88
+ EAA K ++V NL+D+ ++RELF PYGT+ ++R+ ++P
Sbjct: 320 QYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDSTPAERTETP 379
Query: 89 DINK 92
D K
Sbjct: 380 DSEK 383
Score = 35.4 bits (80), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + S+K + T +++ N+ +
Sbjct: 185 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVT 244
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVH 84
E R++F +G + + R+ +GFV+
Sbjct: 245 EEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVN 278
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 78 RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
+ +GFV SPD +K + E+N MV+GKP+ V +A
Sbjct: 428 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALA 463
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVREL 64
N +G A+++LN ++ KP +I S++ P T VF+ NL + +
Sbjct: 102 NTADGERALEDLNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 65 FVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V IS
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHIS 217
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTR 57
H E E AIK +NG ++N+K + + S+K + T V++ N+
Sbjct: 186 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVT 245
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E R++F +G + + R+ +GFV+ + D + E+N + G+ + V
Sbjct: 246 DEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYV 305
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 53/136 (38%)
Query: 30 KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN---------- 79
+ EAA K ++V NL+D+ ++RELF P+GT+ ++R+
Sbjct: 321 QYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSES 380
Query: 80 ------------------------------------------YGFVHIDSPD-INKCIKE 96
+GFV SPD +K + E
Sbjct: 381 EKEKESNKENEKEGEEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTE 440
Query: 97 LNGMMVDGKPMKVVVA 112
+N MV+GKP+ V +A
Sbjct: 441 MNQRMVNGKPLYVALA 456
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 15/123 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---TPTTKVFVGNLSDNTRAPEV 61
+ N E+G A+ ELN ++ +P +I S++ P+ T VF+ NL +
Sbjct: 127 NFHNMEDGEKALDELNYTLIKGRPCRI--MWSQRDPSLRKMGTGNVFIKNLDPAIDNKAL 184
Query: 62 RELFVPYGTVVECDI-------VRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAG 113
+ F +G ++ C + + YGFVH DS + N I+ +NGM+++ K KV V
Sbjct: 185 HDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDK--KVYVGH 242
Query: 114 FIS 116
+S
Sbjct: 243 HVS 245
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 29 LKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYG 81
+K+E +G N +F+ NL D ++ F +GT+ I+ + +G
Sbjct: 353 MKLEKMNKYQGVN-----LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFG 407
Query: 82 FVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
FV +P+ NK + E+N M+ GKP+ V +A
Sbjct: 408 FVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H ++ E AI+ +NG ++N+K + + SR+ + T V++ NL
Sbjct: 214 HFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEIT 273
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKV 109
E +LF +G + +V R +GFV+ + + K + ELN GK + V
Sbjct: 274 EQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYV 333
Score = 36.2 bits (82), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 300 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDV-------VKNYGFV 346
P +GT +FI N++P + + F +GK++ C V K YGFV
Sbjct: 160 PSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFV 213
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 22/161 (13%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRK-----GPNTPTTKVFVGNLSDNTRAPEVR 62
N+E + AI++LNG ++N+K + + R+ T T V+V NL+++T +++
Sbjct: 173 NEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLK 232
Query: 63 ELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVAGF 114
F YG + ++++ +GFV+ ++ D + ++ LNG D K V A
Sbjct: 233 NAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQK 292
Query: 115 ISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKS 155
S + L V R KE A F+SS Y K+
Sbjct: 293 KSERETELRV-------RYEQNLKEA--ADKFQSSNLYVKN 324
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP-----------------TTKV 47
+ EN ++ A++ LNG ++K + A + T ++ +
Sbjct: 261 NFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNL 320
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNG 99
+V NL + +++E+F P+GTV ++R+ GFV +P + + + +L+G
Sbjct: 321 YVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSG 380
Query: 100 MMVDGKPMKVVVA 112
M++ KP+ V +A
Sbjct: 381 KMIESKPLYVAIA 393
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 13/106 (12%)
Query: 18 ELNGQIVNEKPLKIEAATSRKGPNTPT----TKVFVGNLSDNTRAPEVRELFVPYGTVVE 73
+L GQ N + +A + G T T T ++VG+L N ++ + F GTVV
Sbjct: 5 QLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVT 64
Query: 74 CDIVRN--------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVV 110
+ R+ YG+V+ +P D + I+ELN + + GKP++V+
Sbjct: 65 VRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVM 110
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVREL 64
N ++ AI+ELN + KP+++ S + P+ + +F+ NL ++ + +
Sbjct: 86 NPQDAARAIQELNYIPLYGKPIRV--MYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDT 143
Query: 65 FVPYGTVVECDIV-------RNYGFV-HIDSPDINKCIKELNGMMVDGKPMKV 109
F +G +V C + + YGFV + + K I++LNGM+++ K + V
Sbjct: 144 FSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 21/125 (16%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLS 53
EN AI+E+ G+ ++ +P+ + +TS+ P+ P+ +F+GNLS
Sbjct: 216 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLS 275
Query: 54 DNTRAPEVRELFVPYGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
N + ELF +G VV E + + +G+V + D K + L G +D
Sbjct: 276 FNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDN 335
Query: 105 KPMKV 109
+P+++
Sbjct: 336 RPVRL 340
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 39 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 89
P+ P ++VG+L + + E F P G ++ + R+ Y +V+ P D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 90 INKCIKELNGMMVDGKPMKVV 110
+ + +N ++ GKP++++
Sbjct: 65 AERALDTMNFDVIKGKPVRIM 85
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+++LF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 39 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 89
P+ P ++VG+L + + E F P G ++ + R+ Y +V+ P D
Sbjct: 5 APSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 90 INKCIKELNGMMVDGKPMKVV 110
+ + +N ++ GKP++++
Sbjct: 65 AERALDTMNFDVIKGKPVRIM 85
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPL-------KIEAATS--RKGPNTPTTKV--------FV 49
E E+ + A+ E+NG+ +N K + K+E T RK ++ +V
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 50 GNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDSP-DINKCIKELNGMMV 102
NL D +R+ F P+GT+ ++ + +GFV SP + K + E+NG +V
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 103 DGKPMKVVVA 112
KP+ V +A
Sbjct: 359 ATKPLYVALA 368
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-------TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK T V++ N ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF +G + ++ + +GFV + D K + E+NG ++GK + V
Sbjct: 204 DERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFVP 67
+ A+ +N ++ KP++I S++ P+ + +F+ NL + + + F
Sbjct: 64 DAERALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 68 YGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C +V + YGFVH ++ + + I+++NGM+++ + KV V F S
Sbjct: 122 FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKS 175
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 39 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-D 89
P+ P ++VG+L + + E F P G ++ + R+ Y +V+ P D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 90 INKCIKELNGMMVDGKPMKVV 110
+ + +N ++ GKP++++
Sbjct: 65 AERALDTMNFDVIKGKPVRIM 85
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI-----------------EAATSRKGPNTPTTKV 47
+ E+ E A++ELN + +N + + + EA K +
Sbjct: 279 NFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNL 338
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSP-DINKCIKELNG 99
FV NL D + ++ E F P+GT+ ++ + +GFV +P + K I E+N
Sbjct: 339 FVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNT 398
Query: 100 MMVDGKPMKVVVA 112
M++GKP+ V +A
Sbjct: 399 RMINGKPLYVALA 411
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
Query: 19 LNGQIVNEKPLKIEAATSRKGPNTP-------TTKVFVGNLSDNTRAPEVRELFVPYGTV 71
+NG ++N++ + + S+K + T ++V N+ N +LF P+G +
Sbjct: 200 VNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKI 259
Query: 72 VECDIVRN-------YGFVHI-DSPDINKCIKELNGMMVDGKPMKV 109
+ ++ +GFV+ D K ++ELN ++G+ + V
Sbjct: 260 TSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYV 305
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEVRELFV 66
E+G AI+ELN + +P +I S++ P+ + +F+ NL + + F
Sbjct: 104 EDGEKAIEELNYNPIEGRPCRI--MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFS 161
Query: 67 PYGTVVECDIVRN-------YGFVHI-DSPDINKCIKELNGMMVDGKPMKVVVAGFIS 116
+G ++ C + + +GFVH + I+ +NGM+++ + +V V IS
Sbjct: 162 AFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDR--EVFVGKHIS 217
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,878,450
Number of Sequences: 539616
Number of extensions: 6748958
Number of successful extensions: 29372
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 347
Number of HSP's that attempted gapping in prelim test: 27838
Number of HSP's gapped (non-prelim): 1786
length of query: 346
length of database: 191,569,459
effective HSP length: 118
effective length of query: 228
effective length of database: 127,894,771
effective search space: 29160007788
effective search space used: 29160007788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)