Query psy16419
Match_columns 346
No_of_seqs 382 out of 2228
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 20:48:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16419.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16419hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3E-28 6.4E-33 230.8 25.6 113 1-114 47-170 (352)
2 KOG0117|consensus 99.9 3.8E-27 8.3E-32 215.6 15.0 106 2-114 128-247 (506)
3 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.1E-25 2.3E-30 221.1 25.2 114 1-114 40-173 (481)
4 KOG0145|consensus 99.9 1E-26 2.2E-31 199.3 14.5 112 2-114 86-208 (360)
5 TIGR01628 PABP-1234 polyadenyl 99.9 6.7E-26 1.5E-30 227.4 19.6 114 1-114 44-166 (562)
6 TIGR01628 PABP-1234 polyadenyl 99.9 8.3E-26 1.8E-30 226.7 19.4 114 1-114 131-260 (562)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 6.6E-25 1.4E-29 215.6 23.6 72 43-114 274-350 (481)
8 TIGR01648 hnRNP-R-Q heterogene 99.9 2.1E-25 4.5E-30 218.8 18.0 107 1-114 101-221 (578)
9 KOG0109|consensus 99.9 2.3E-25 4.9E-30 193.9 12.8 145 2-149 39-185 (346)
10 KOG0127|consensus 99.9 3.7E-24 8E-29 200.2 19.0 118 1-118 49-199 (678)
11 TIGR01659 sex-lethal sex-letha 99.9 2.6E-24 5.6E-29 201.2 14.6 73 42-114 105-186 (346)
12 KOG0109|consensus 99.9 8.5E-25 1.8E-29 190.3 8.6 70 45-114 3-73 (346)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.9 7.3E-23 1.6E-27 203.3 18.3 113 1-114 225-374 (509)
14 TIGR01622 SF-CC1 splicing fact 99.9 1.1E-21 2.4E-26 192.2 24.7 113 1-114 133-265 (457)
15 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.4E-22 5.3E-27 190.4 15.3 72 43-114 2-82 (352)
16 TIGR01645 half-pint poly-U bin 99.9 2.9E-22 6.3E-27 197.1 15.1 71 42-112 105-184 (612)
17 KOG0148|consensus 99.9 2.9E-22 6.2E-27 173.0 11.8 87 28-114 42-141 (321)
18 TIGR01648 hnRNP-R-Q heterogene 99.9 2.1E-21 4.5E-26 190.7 17.7 114 1-114 184-306 (578)
19 TIGR01659 sex-lethal sex-letha 99.9 8.5E-21 1.8E-25 177.5 16.9 116 1-117 151-277 (346)
20 KOG0144|consensus 99.9 3.4E-21 7.3E-26 176.0 13.1 115 2-116 79-207 (510)
21 KOG0123|consensus 99.9 4.7E-21 1E-25 180.2 14.5 106 2-114 40-152 (369)
22 KOG0148|consensus 99.8 2E-20 4.4E-25 161.6 13.3 113 2-114 107-237 (321)
23 TIGR01622 SF-CC1 splicing fact 99.8 4.2E-20 9E-25 181.2 15.6 72 42-114 87-167 (457)
24 KOG0144|consensus 99.8 1.1E-20 2.4E-25 172.6 7.8 74 41-114 31-116 (510)
25 TIGR01642 U2AF_lg U2 snRNP aux 99.8 5.5E-19 1.2E-23 175.5 15.4 71 42-113 173-258 (509)
26 TIGR01645 half-pint poly-U bin 99.8 5.9E-19 1.3E-23 173.8 14.5 114 1-114 151-283 (612)
27 KOG0123|consensus 99.8 4E-19 8.7E-24 167.2 11.7 112 3-114 119-245 (369)
28 KOG0110|consensus 99.8 1.4E-18 3E-23 167.9 12.2 113 2-114 424-597 (725)
29 KOG0131|consensus 99.8 1.1E-18 2.3E-23 142.9 7.3 73 42-114 7-88 (203)
30 KOG0105|consensus 99.8 1.6E-17 3.4E-22 136.3 13.2 73 42-114 4-82 (241)
31 KOG0145|consensus 99.8 3.5E-18 7.6E-23 147.0 9.4 73 42-114 39-120 (360)
32 KOG0117|consensus 99.8 5E-18 1.1E-22 156.0 11.0 115 1-115 210-331 (506)
33 KOG0127|consensus 99.7 1E-17 2.2E-22 157.3 11.6 71 44-114 5-84 (678)
34 KOG0124|consensus 99.7 3.7E-18 8E-23 153.1 5.5 67 44-110 113-188 (544)
35 KOG0107|consensus 99.7 8.4E-17 1.8E-21 131.0 12.4 101 42-142 8-118 (195)
36 PLN03134 glycine-rich RNA-bind 99.7 1.8E-16 4E-21 130.4 13.9 75 42-116 32-115 (144)
37 KOG0131|consensus 99.7 2.6E-17 5.7E-22 134.8 7.8 114 1-114 53-176 (203)
38 KOG4205|consensus 99.7 2E-16 4.3E-21 144.2 9.2 71 43-114 5-84 (311)
39 KOG0110|consensus 99.6 5.6E-16 1.2E-20 150.1 9.7 114 1-114 562-692 (725)
40 KOG0146|consensus 99.6 9.7E-16 2.1E-20 132.5 8.2 88 26-114 2-100 (371)
41 KOG1457|consensus 99.6 2.4E-14 5.3E-19 120.9 13.8 73 42-114 32-117 (284)
42 KOG0124|consensus 99.6 5.9E-15 1.3E-19 132.7 8.8 114 1-114 157-289 (544)
43 KOG0106|consensus 99.5 2.5E-14 5.3E-19 123.0 6.6 70 45-114 2-72 (216)
44 PF00076 RRM_1: RNA recognitio 99.5 9.9E-14 2.2E-18 99.5 8.6 62 47-108 1-70 (70)
45 KOG0125|consensus 99.5 5.1E-14 1.1E-18 125.3 8.2 92 22-114 75-173 (376)
46 KOG4206|consensus 99.5 8.2E-13 1.8E-17 112.6 13.9 71 44-114 9-89 (221)
47 KOG0121|consensus 99.5 1.1E-13 2.4E-18 107.2 6.9 73 42-114 34-115 (153)
48 PLN03120 nucleic acid binding 99.4 6.6E-13 1.4E-17 117.2 9.6 70 44-114 4-79 (260)
49 KOG4212|consensus 99.4 1.2E-11 2.7E-16 113.9 14.8 72 43-114 43-123 (608)
50 KOG0147|consensus 99.4 1.4E-12 3.1E-17 123.5 8.7 113 1-114 223-357 (549)
51 KOG1190|consensus 99.4 2E-11 4.4E-16 111.7 15.7 113 2-114 191-372 (492)
52 KOG4207|consensus 99.4 3.3E-12 7.1E-17 107.0 9.2 73 42-114 11-92 (256)
53 PF14259 RRM_6: RNA recognitio 99.4 5.2E-12 1.1E-16 90.8 9.0 62 47-108 1-70 (70)
54 PLN03213 repressor of silencin 99.3 3.6E-12 7.7E-17 119.0 9.2 73 42-114 8-87 (759)
55 KOG0122|consensus 99.3 5.5E-12 1.2E-16 108.3 8.3 73 42-114 187-268 (270)
56 COG0724 RNA-binding proteins ( 99.3 2.5E-11 5.4E-16 109.7 13.1 70 44-113 115-193 (306)
57 KOG0147|consensus 99.3 7.6E-13 1.7E-17 125.3 2.4 72 42-114 177-257 (549)
58 KOG0111|consensus 99.3 2.1E-12 4.6E-17 109.0 4.7 73 42-114 8-89 (298)
59 PLN03121 nucleic acid binding 99.3 1.5E-11 3.3E-16 106.9 9.8 71 43-114 4-80 (243)
60 KOG0114|consensus 99.3 2.1E-11 4.5E-16 91.1 8.8 73 42-114 16-94 (124)
61 KOG0149|consensus 99.3 4.6E-12 1E-16 108.3 6.0 72 42-114 10-90 (247)
62 smart00362 RRM_2 RNA recogniti 99.3 3.6E-11 7.7E-16 85.7 8.8 65 46-110 1-72 (72)
63 KOG0113|consensus 99.3 9.2E-11 2E-15 103.5 12.7 73 42-114 99-180 (335)
64 KOG4212|consensus 99.3 1.1E-09 2.3E-14 101.3 20.2 113 2-114 89-293 (608)
65 KOG0130|consensus 99.2 2.4E-11 5.3E-16 95.0 7.5 73 42-114 70-151 (170)
66 KOG1456|consensus 99.2 6.6E-10 1.4E-14 100.8 17.2 113 2-114 162-362 (494)
67 KOG1456|consensus 99.2 1.6E-09 3.6E-14 98.3 19.2 114 1-114 69-198 (494)
68 PF13893 RRM_5: RNA recognitio 99.2 1.5E-10 3.1E-15 79.5 8.8 52 61-112 1-56 (56)
69 KOG4205|consensus 99.2 2.7E-11 5.8E-16 110.8 6.3 113 1-115 50-176 (311)
70 KOG0146|consensus 99.1 1.6E-10 3.6E-15 100.4 8.3 74 42-115 283-365 (371)
71 smart00360 RRM RNA recognition 99.1 2E-10 4.4E-15 81.3 7.5 62 49-110 1-71 (71)
72 cd00590 RRM RRM (RNA recogniti 99.1 3.9E-10 8.4E-15 80.7 9.0 66 46-111 1-74 (74)
73 KOG0105|consensus 99.1 1.5E-09 3.2E-14 89.7 11.9 111 1-111 47-186 (241)
74 KOG0126|consensus 99.1 2.6E-11 5.6E-16 99.7 1.5 96 15-114 9-114 (219)
75 KOG0106|consensus 99.1 1.1E-10 2.3E-15 100.7 4.9 111 1-111 37-167 (216)
76 KOG0108|consensus 99.0 3.7E-10 8.1E-15 107.7 7.2 70 45-114 19-97 (435)
77 KOG1457|consensus 99.0 8.1E-10 1.7E-14 93.8 8.0 102 1-102 79-273 (284)
78 KOG4206|consensus 99.0 2.2E-09 4.8E-14 91.8 10.6 112 2-113 55-220 (221)
79 KOG0132|consensus 98.9 1.7E-09 3.7E-14 106.3 7.2 72 43-114 420-494 (894)
80 KOG4211|consensus 98.9 1E-07 2.2E-12 89.9 18.1 111 2-114 52-181 (510)
81 KOG0153|consensus 98.9 4.2E-09 9.1E-14 95.0 8.5 73 42-114 226-302 (377)
82 PLN03134 glycine-rich RNA-bind 98.9 2.1E-09 4.5E-14 88.5 6.0 42 305-346 32-81 (144)
83 smart00361 RRM_1 RNA recogniti 98.9 4.7E-09 1E-13 75.4 7.0 52 58-109 2-69 (70)
84 KOG1190|consensus 98.9 1.7E-08 3.7E-13 92.8 10.9 113 2-114 338-490 (492)
85 KOG0116|consensus 98.8 2.9E-08 6.2E-13 94.4 11.0 74 43-117 287-369 (419)
86 KOG4661|consensus 98.8 1.2E-08 2.6E-13 97.2 6.8 73 42-114 403-484 (940)
87 KOG0125|consensus 98.7 1.2E-08 2.6E-13 91.4 5.6 41 306-346 95-141 (376)
88 KOG0415|consensus 98.7 1.6E-08 3.5E-13 91.3 6.0 75 42-116 237-320 (479)
89 PF00076 RRM_1: RNA recognitio 98.7 1.5E-08 3.2E-13 72.3 4.5 37 310-346 1-44 (70)
90 KOG4454|consensus 98.6 8.3E-09 1.8E-13 87.5 0.1 70 43-112 8-84 (267)
91 KOG1548|consensus 98.6 8.6E-07 1.9E-11 80.3 11.7 113 2-114 186-351 (382)
92 KOG0151|consensus 98.6 1.1E-07 2.5E-12 92.9 6.6 73 42-114 172-256 (877)
93 KOG0129|consensus 98.5 6.6E-07 1.4E-11 85.0 10.5 70 42-114 257-340 (520)
94 KOG4211|consensus 98.5 9.9E-07 2.1E-11 83.4 10.9 69 44-114 10-85 (510)
95 PF14259 RRM_6: RNA recognitio 98.5 2.4E-07 5.3E-12 66.2 4.6 37 310-346 1-44 (70)
96 KOG0113|consensus 98.4 2.2E-07 4.8E-12 82.4 5.0 50 297-346 91-148 (335)
97 KOG4209|consensus 98.4 1.4E-06 2.9E-11 77.1 8.8 73 42-115 99-180 (231)
98 KOG0533|consensus 98.4 8.7E-07 1.9E-11 78.3 7.5 73 42-114 81-161 (243)
99 KOG4208|consensus 98.4 8.1E-07 1.8E-11 75.1 6.8 73 42-114 47-129 (214)
100 KOG0114|consensus 98.4 5.4E-07 1.2E-11 67.7 5.0 44 303-346 14-62 (124)
101 KOG0120|consensus 98.4 3.4E-07 7.4E-12 88.3 5.0 113 1-114 225-368 (500)
102 KOG0226|consensus 98.4 3.3E-07 7.2E-12 79.6 4.3 113 2-114 143-269 (290)
103 KOG0128|consensus 98.3 5.1E-08 1.1E-12 97.2 -2.4 96 2-98 617-730 (881)
104 KOG4660|consensus 98.3 4E-07 8.6E-12 87.2 3.4 67 42-108 73-143 (549)
105 KOG0126|consensus 98.3 1.9E-07 4.1E-12 77.2 0.2 40 307-346 35-82 (219)
106 KOG0121|consensus 98.2 1.2E-06 2.5E-11 68.5 3.0 33 307-339 36-68 (153)
107 smart00362 RRM_2 RNA recogniti 98.1 3.4E-06 7.4E-11 59.4 4.4 38 309-346 1-44 (72)
108 KOG0120|consensus 98.1 9.9E-06 2.1E-10 78.3 8.6 114 1-114 333-491 (500)
109 KOG1548|consensus 98.1 8.2E-06 1.8E-10 74.0 7.2 72 43-114 133-220 (382)
110 COG0724 RNA-binding proteins ( 98.1 3.1E-06 6.8E-11 76.1 4.7 40 307-346 115-162 (306)
111 KOG0112|consensus 98.1 1.8E-06 3.8E-11 86.9 2.5 62 42-103 370-439 (975)
112 KOG0122|consensus 98.1 3.9E-06 8.6E-11 72.7 4.1 41 306-346 188-236 (270)
113 PF13893 RRM_5: RNA recognitio 98.0 1.4E-05 3E-10 54.5 5.5 34 1-34 23-56 (56)
114 KOG0132|consensus 98.0 3E-05 6.4E-10 77.2 8.7 40 307-346 421-462 (894)
115 KOG4210|consensus 98.0 1.6E-05 3.4E-10 72.7 6.2 111 2-114 133-263 (285)
116 KOG4676|consensus 97.9 1.2E-05 2.7E-10 73.9 4.7 69 45-114 8-88 (479)
117 PF11608 Limkain-b1: Limkain b 97.9 3.1E-05 6.8E-10 56.2 5.4 68 45-114 3-76 (90)
118 cd00590 RRM RRM (RNA recogniti 97.9 2.2E-05 4.8E-10 55.5 4.4 33 309-341 1-33 (74)
119 KOG4210|consensus 97.8 1.2E-05 2.5E-10 73.6 3.6 67 43-109 87-162 (285)
120 PF04059 RRM_2: RNA recognitio 97.8 9E-05 1.9E-09 56.3 7.5 70 45-114 2-86 (97)
121 KOG0112|consensus 97.8 4.1E-05 8.9E-10 77.4 7.2 110 2-114 416-530 (975)
122 KOG0415|consensus 97.8 1.5E-05 3.3E-10 72.5 3.4 42 305-346 237-286 (479)
123 smart00360 RRM RNA recognition 97.8 2.3E-05 4.9E-10 54.8 3.2 35 312-346 1-43 (71)
124 KOG4661|consensus 97.7 6.7E-05 1.5E-09 72.2 6.4 40 307-346 405-452 (940)
125 KOG0153|consensus 97.7 4.6E-05 1E-09 69.3 4.8 40 307-346 228-269 (377)
126 PF08777 RRM_3: RNA binding mo 97.7 8E-05 1.7E-09 57.7 5.4 68 45-112 2-77 (105)
127 smart00361 RRM_1 RNA recogniti 97.5 0.00018 3.8E-09 51.5 4.8 30 2-31 40-69 (70)
128 KOG1365|consensus 97.5 4.4E-05 9.6E-10 70.2 2.0 112 2-114 209-361 (508)
129 KOG0116|consensus 97.5 7.9E-05 1.7E-09 71.2 3.3 39 308-346 289-335 (419)
130 COG5175 MOT2 Transcriptional r 97.5 0.00026 5.7E-09 64.2 6.1 71 44-114 114-202 (480)
131 KOG0115|consensus 97.4 0.0015 3.3E-08 57.3 10.5 83 10-100 5-95 (275)
132 KOG1365|consensus 97.4 0.00027 5.8E-09 65.2 5.7 102 2-105 105-233 (508)
133 KOG0107|consensus 97.4 0.00016 3.5E-09 59.8 3.5 39 1-39 49-87 (195)
134 KOG0130|consensus 97.4 0.00018 3.9E-09 56.9 3.5 44 303-346 68-119 (170)
135 KOG2193|consensus 97.3 8.1E-05 1.8E-09 69.3 1.3 70 45-114 2-75 (584)
136 KOG0151|consensus 97.3 0.00019 4E-09 71.0 3.6 43 304-346 171-224 (877)
137 KOG2193|consensus 97.1 1.5E-05 3.2E-10 74.0 -5.5 109 2-113 40-155 (584)
138 KOG0129|consensus 97.1 0.0049 1.1E-07 59.2 10.6 95 2-96 309-432 (520)
139 KOG0111|consensus 97.1 0.00047 1E-08 59.1 3.2 44 1-44 54-97 (298)
140 KOG0128|consensus 97.0 0.00025 5.5E-09 71.5 1.2 96 1-114 711-814 (881)
141 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0017 3.8E-08 43.5 4.4 49 45-94 2-53 (53)
142 KOG4207|consensus 96.9 0.00072 1.6E-08 57.4 2.7 36 1-36 57-92 (256)
143 PF08952 DUF1866: Domain of un 96.9 0.0058 1.2E-07 49.6 7.7 54 60-114 52-106 (146)
144 KOG4307|consensus 96.8 0.0018 4E-08 64.0 5.3 110 2-112 355-511 (944)
145 KOG1855|consensus 96.6 0.0043 9.2E-08 58.3 6.2 58 42-99 229-308 (484)
146 KOG3152|consensus 96.6 0.0011 2.3E-08 58.2 1.7 64 43-106 73-157 (278)
147 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.014 3E-07 44.6 7.3 69 44-114 6-91 (100)
148 KOG0226|consensus 96.5 0.0013 2.7E-08 57.8 1.7 43 304-346 187-237 (290)
149 KOG1995|consensus 96.4 0.0019 4.2E-08 59.3 2.7 75 42-116 64-155 (351)
150 KOG4454|consensus 96.4 0.00072 1.6E-08 58.0 -0.4 89 1-103 51-151 (267)
151 KOG1996|consensus 96.4 0.0087 1.9E-07 53.6 6.1 56 59-114 301-366 (378)
152 KOG2314|consensus 96.3 0.0071 1.5E-07 58.7 5.9 72 42-113 56-142 (698)
153 KOG0533|consensus 96.2 0.0058 1.2E-07 54.3 4.0 34 307-340 83-116 (243)
154 KOG2202|consensus 96.1 0.0019 4.2E-08 56.8 0.9 56 59-114 83-147 (260)
155 PLN03120 nucleic acid binding 95.9 0.013 2.8E-07 52.4 5.2 37 1-38 45-81 (260)
156 PF03880 DbpA: DbpA RNA bindin 95.9 0.054 1.2E-06 39.0 7.3 66 46-112 2-74 (74)
157 KOG4307|consensus 95.7 0.025 5.5E-07 56.3 6.7 69 43-111 865-943 (944)
158 KOG4660|consensus 95.7 0.0078 1.7E-07 58.4 2.9 40 300-339 68-107 (549)
159 KOG4209|consensus 95.5 0.0081 1.7E-07 53.3 2.3 43 304-346 98-148 (231)
160 KOG4849|consensus 95.5 0.29 6.3E-06 45.1 12.2 66 44-109 80-156 (498)
161 PF08777 RRM_3: RNA binding mo 95.3 0.024 5.1E-07 43.9 3.8 35 308-342 2-36 (105)
162 KOG2416|consensus 95.2 0.016 3.5E-07 56.6 3.4 75 40-114 440-521 (718)
163 PF15023 DUF4523: Protein of u 95.1 0.09 2E-06 42.4 6.8 72 42-114 84-161 (166)
164 PF11608 Limkain-b1: Limkain b 95.0 0.036 7.9E-07 40.5 3.9 36 2-37 42-77 (90)
165 PLN03121 nucleic acid binding 94.9 0.039 8.4E-07 48.7 4.5 35 1-36 46-80 (243)
166 PF08675 RNA_bind: RNA binding 94.8 0.16 3.5E-06 37.1 6.7 53 45-98 10-63 (87)
167 PLN03213 repressor of silencin 94.8 0.032 6.9E-07 53.5 3.9 36 1-36 50-87 (759)
168 KOG0115|consensus 94.8 0.05 1.1E-06 48.0 4.8 33 308-340 32-64 (275)
169 KOG2591|consensus 94.3 0.12 2.6E-06 50.5 6.6 91 12-109 150-246 (684)
170 KOG0108|consensus 94.2 0.048 1E-06 52.8 3.9 38 1-38 62-99 (435)
171 PF07292 NID: Nmi/IFP 35 domai 94.0 0.19 4E-06 37.4 5.8 64 2-66 1-74 (88)
172 KOG4208|consensus 93.8 0.062 1.3E-06 46.0 3.4 35 2-36 95-129 (214)
173 KOG1855|consensus 93.3 0.14 3E-06 48.5 5.0 37 305-341 229-265 (484)
174 KOG2253|consensus 93.0 0.055 1.2E-06 53.8 2.0 82 30-112 26-108 (668)
175 PF04059 RRM_2: RNA recognitio 92.6 0.21 4.6E-06 37.9 4.3 39 308-346 2-50 (97)
176 PF03467 Smg4_UPF3: Smg-4/UPF3 92.4 0.31 6.7E-06 41.4 5.6 73 42-114 5-97 (176)
177 PF04847 Calcipressin: Calcipr 90.7 1 2.2E-05 38.5 6.9 58 57-114 8-70 (184)
178 KOG2135|consensus 90.5 0.16 3.4E-06 48.7 2.0 70 44-114 372-445 (526)
179 KOG2202|consensus 90.4 0.2 4.3E-06 44.4 2.4 34 2-35 113-146 (260)
180 PF10309 DUF2414: Protein of u 90.3 1.4 2.9E-05 30.5 5.9 52 44-97 5-62 (62)
181 KOG2068|consensus 90.2 0.082 1.8E-06 48.6 -0.1 70 45-114 78-162 (327)
182 PF14605 Nup35_RRM_2: Nup53/35 89.5 0.44 9.6E-06 31.8 3.1 31 309-340 3-33 (53)
183 KOG3152|consensus 89.1 0.48 1E-05 42.0 3.7 34 307-340 74-107 (278)
184 KOG4285|consensus 88.7 0.73 1.6E-05 41.8 4.7 65 45-111 198-266 (350)
185 PF11767 SET_assoc: Histone ly 87.7 3.3 7.3E-05 29.0 6.6 54 55-109 11-65 (66)
186 KOG4676|consensus 85.0 0.28 6E-06 45.9 0.1 101 1-103 54-214 (479)
187 PF07576 BRAP2: BRCA1-associat 84.8 7.5 0.00016 30.2 7.9 61 44-104 12-81 (110)
188 PRK11634 ATP-dependent RNA hel 83.7 4.6 9.9E-05 41.5 8.2 69 45-114 487-562 (629)
189 KOG4574|consensus 83.3 0.61 1.3E-05 47.9 1.6 68 47-114 301-373 (1007)
190 PF00098 zf-CCHC: Zinc knuckle 83.0 1 2.2E-05 22.9 1.6 17 126-142 2-18 (18)
191 COG5175 MOT2 Transcriptional r 81.6 0.9 1.9E-05 41.8 1.9 34 3-36 169-202 (480)
192 PF08952 DUF1866: Domain of un 80.6 3.2 6.8E-05 33.9 4.5 32 3-35 74-105 (146)
193 KOG2253|consensus 79.4 1.7 3.8E-05 43.5 3.2 40 305-345 38-77 (668)
194 PF11767 SET_assoc: Histone ly 78.4 3.8 8.1E-05 28.7 3.8 29 3-31 37-65 (66)
195 KOG0149|consensus 75.0 2.3 5E-05 37.3 2.4 33 2-35 57-89 (247)
196 KOG1995|consensus 74.5 2 4.4E-05 40.0 2.0 30 307-336 66-95 (351)
197 PF14787 zf-CCHC_5: GAG-polypr 71.8 2.5 5.4E-05 25.6 1.2 18 125-142 3-20 (36)
198 KOG0804|consensus 68.0 17 0.00038 35.1 6.6 62 43-104 73-142 (493)
199 PF15513 DUF4651: Domain of un 67.6 6.4 0.00014 27.1 2.7 18 322-339 9-26 (62)
200 PF05172 Nup35_RRM: Nup53/35/4 66.2 6.6 0.00014 30.0 2.9 31 3-34 58-89 (100)
201 KOG2891|consensus 65.7 4.1 9E-05 36.6 2.0 35 43-77 148-194 (445)
202 PF14111 DUF4283: Domain of un 61.2 2.5 5.3E-05 34.6 -0.3 75 2-77 58-138 (153)
203 PF14111 DUF4283: Domain of un 61.1 7.9 0.00017 31.5 2.8 31 310-340 107-138 (153)
204 PF08675 RNA_bind: RNA binding 59.3 19 0.00042 26.5 4.1 28 309-337 11-38 (87)
205 KOG4849|consensus 59.1 2.7 5.9E-05 39.0 -0.4 26 308-333 81-106 (498)
206 PF03880 DbpA: DbpA RNA bindin 58.6 12 0.00026 26.6 3.1 32 2-34 43-74 (74)
207 PF13696 zf-CCHC_2: Zinc knuck 57.6 4.7 0.0001 23.8 0.6 19 124-142 8-26 (32)
208 KOG2891|consensus 57.1 9.6 0.00021 34.3 2.7 33 308-340 150-194 (445)
209 KOG4008|consensus 56.3 8.5 0.00018 33.9 2.2 39 307-345 40-78 (261)
210 KOG2318|consensus 55.2 51 0.0011 33.1 7.4 71 42-112 172-305 (650)
211 PF11411 DNA_ligase_IV: DNA li 54.9 8.7 0.00019 23.3 1.4 17 317-333 19-35 (36)
212 KOG2314|consensus 51.2 18 0.00039 36.0 3.7 32 2-33 108-140 (698)
213 PF07576 BRAP2: BRCA1-associat 50.0 18 0.0004 28.1 3.0 26 1-26 56-81 (110)
214 PF15513 DUF4651: Domain of un 49.8 27 0.00058 24.1 3.4 19 59-77 9-27 (62)
215 PF02714 DUF221: Domain of unk 47.1 38 0.00082 31.4 5.3 57 2-67 1-57 (325)
216 KOG4410|consensus 46.4 32 0.0007 31.2 4.3 44 44-87 330-376 (396)
217 PF04847 Calcipressin: Calcipr 39.5 34 0.00073 29.3 3.3 33 3-35 35-69 (184)
218 KOG2318|consensus 39.2 37 0.00081 34.0 3.9 37 304-340 171-212 (650)
219 PF13917 zf-CCHC_3: Zinc knuck 35.9 33 0.00072 21.6 2.0 19 124-142 4-22 (42)
220 COG5222 Uncharacterized conser 35.8 20 0.00044 32.7 1.4 24 123-146 175-198 (427)
221 PF03468 XS: XS domain; Inter 33.8 65 0.0014 25.2 3.8 40 56-95 29-75 (116)
222 COG0030 KsgA Dimethyladenosine 31.2 64 0.0014 29.2 3.8 32 309-340 97-128 (259)
223 KOG2295|consensus 30.0 12 0.00027 37.0 -1.0 61 44-104 231-300 (648)
224 KOG4365|consensus 28.0 8.5 0.00018 37.0 -2.4 71 44-114 3-81 (572)
225 PF10567 Nab6_mRNP_bdg: RNA-re 27.0 1.4E+02 0.003 27.5 5.1 73 42-114 13-107 (309)
226 KOG4019|consensus 25.2 51 0.0011 28.0 2.0 70 45-114 11-89 (193)
227 KOG4574|consensus 25.0 41 0.00089 35.3 1.6 37 1-37 336-374 (1007)
228 PF09585 Lin0512_fam: Conserve 24.2 75 0.0016 24.8 2.6 26 315-342 59-84 (113)
229 COG5638 Uncharacterized conser 23.9 3.8E+02 0.0082 25.9 7.5 36 42-77 144-184 (622)
230 TIGR02058 lin0512_fam conserve 23.6 77 0.0017 24.9 2.5 24 317-342 63-86 (116)
231 COG5638 Uncharacterized conser 23.3 1.1E+02 0.0024 29.4 4.0 37 304-340 143-184 (622)
232 KOG2591|consensus 23.3 1.5E+02 0.0031 29.9 4.9 38 303-340 171-210 (684)
233 smart00343 ZnF_C2HC zinc finge 23.2 49 0.0011 18.0 1.1 16 127-142 2-17 (26)
234 PF13046 DUF3906: Protein of u 23.1 91 0.002 21.6 2.5 28 319-346 30-63 (64)
235 KOG2068|consensus 21.5 27 0.00058 32.5 -0.4 35 2-36 128-162 (327)
236 PF00398 RrnaAD: Ribosomal RNA 20.4 1.1E+02 0.0023 27.6 3.3 34 307-340 97-132 (262)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=3e-28 Score=230.84 Aligned_cols=113 Identities=24% Similarity=0.483 Sum_probs=102.5
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 77 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--- 77 (346)
.|||+|.+.++|++||+.|||..|.|+.|.|.++.+.... ...++|||+|||..+++++|+++|++||.|..+.++
T Consensus 47 ~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~-~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 125 (352)
T TIGR01661 47 YGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDS-IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDN 125 (352)
T ss_pred EEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccc-cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecC
Confidence 3899999999999999999999999999999998765432 456789999999999999999999999999999886
Q ss_pred -----CCEEEEEecC-HHHHHHHHHhCCcEECC--EEEEEEEeec
Q psy16419 78 -----RNYGFVHIDS-PDINKCIKELNGMMVDG--KPMKVVVAGF 114 (346)
Q Consensus 78 -----~g~afV~f~~-~~a~~Ai~~l~g~~~~g--~~l~v~~a~~ 114 (346)
+|||||+|.+ ++|++|++.|||..+.| .+|.|.++..
T Consensus 126 ~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~ 170 (352)
T TIGR01661 126 VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANN 170 (352)
T ss_pred CCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCC
Confidence 6899999999 99999999999999987 5788888766
No 2
>KOG0117|consensus
Probab=99.95 E-value=3.8e-27 Score=215.56 Aligned_cols=106 Identities=25% Similarity=0.336 Sum_probs=93.8
Q ss_pred eEEEecCHHHHHHHHHHhCCCee-CCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCC-eEEEEEE--
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIV-NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT-VVECDIV-- 77 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l-~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~-v~~~~i~-- 77 (346)
|||.|.+.++|++|++.||+.+| .|+.|.|..+.. +++|||||||...++++|.+.+++.++ |++|.+.
T Consensus 128 AFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva-------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~ 200 (506)
T KOG0117|consen 128 AFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA-------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPS 200 (506)
T ss_pred EEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee-------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecC
Confidence 89999999999999999999988 599999988754 689999999999999999999999987 6666665
Q ss_pred -------CCEEEEEecC-HHHHHHHHHh-CC-cEECCEEEEEEEeec
Q psy16419 78 -------RNYGFVHIDS-PDINKCIKEL-NG-MMVDGKPMKVVVAGF 114 (346)
Q Consensus 78 -------~g~afV~f~~-~~a~~Ai~~l-~g-~~~~g~~l~v~~a~~ 114 (346)
||||||+|.+ ..|..|-.+| ++ ..+.|..+.|.||.+
T Consensus 201 p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep 247 (506)
T KOG0117|consen 201 PDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEP 247 (506)
T ss_pred ccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCc
Confidence 8999999999 8888888766 33 367899999999998
No 3
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=1.1e-25 Score=221.15 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=99.2
Q ss_pred CeEEEecCHHHHHHHHHHh--CCCeeCCeeeEEeecCCCCCC-----------CCCCcEEEEcCCCCCCCHHHHHHhhcC
Q psy16419 1 MSSGHMENDEEGRTAIKEL--NGQIVNEKPLKIEAATSRKGP-----------NTPTTKVFVGNLSDNTRAPEVRELFVP 67 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~l--ng~~l~g~~i~v~~~~~~~~~-----------~~~~~~lfV~nLp~~~~e~~L~~~F~~ 67 (346)
+|||+|++.++|++|++.+ ++..|.|++|.|.++..+... .....+|||+||++.+++++|+++|+.
T Consensus 40 ~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~ 119 (481)
T TIGR01649 40 QALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNP 119 (481)
T ss_pred EEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhc
Confidence 4899999999999999864 789999999999998644211 012347999999999999999999999
Q ss_pred CCCeEEEEEE----CCEEEEEecC-HHHHHHHHHhCCcEECC--EEEEEEEeec
Q psy16419 68 YGTVVECDIV----RNYGFVHIDS-PDINKCIKELNGMMVDG--KPMKVVVAGF 114 (346)
Q Consensus 68 ~G~v~~~~i~----~g~afV~f~~-~~a~~Ai~~l~g~~~~g--~~l~v~~a~~ 114 (346)
||.|.+|.|+ +++|||+|.+ ++|.+|++.|||..|.+ +.|+|.+++.
T Consensus 120 ~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~ 173 (481)
T TIGR01649 120 YGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKP 173 (481)
T ss_pred cCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecC
Confidence 9999999888 3699999999 99999999999999964 5899999887
No 4
>KOG0145|consensus
Probab=99.94 E-value=1e-26 Score=199.27 Aligned_cols=112 Identities=25% Similarity=0.477 Sum_probs=103.3
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE----
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---- 77 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~---- 77 (346)
|||.|-++++|++|+..|||..|..+.|+|.++.+.... ....+|||++||..++..||+.+|++||.|...+|.
T Consensus 86 GFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~-Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqv 164 (360)
T KOG0145|consen 86 GFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDS-IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQV 164 (360)
T ss_pred ceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhh-hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 799999999999999999999999999999999987643 567899999999999999999999999999877766
Q ss_pred ----CCEEEEEecC-HHHHHHHHHhCCcEECC--EEEEEEEeec
Q psy16419 78 ----RNYGFVHIDS-PDINKCIKELNGMMVDG--KPMKVVVAGF 114 (346)
Q Consensus 78 ----~g~afV~f~~-~~a~~Ai~~l~g~~~~g--~~l~v~~a~~ 114 (346)
||.|||.|+. ++|+.||..|||..-.| .+|.|+++..
T Consensus 165 tg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFann 208 (360)
T KOG0145|consen 165 TGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANN 208 (360)
T ss_pred cceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCC
Confidence 8999999999 99999999999998766 4899999877
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=6.7e-26 Score=227.40 Aligned_cols=114 Identities=22% Similarity=0.431 Sum_probs=101.7
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC-CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-- 77 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~-~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-- 77 (346)
.|||+|.+.++|++|++.+|+..+.|++|+|.++..... ......+|||+|||.++++++|+++|+.||.|.+|.+.
T Consensus 44 ~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~ 123 (562)
T TIGR01628 44 YGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD 123 (562)
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec
Confidence 389999999999999999999999999999998753322 22345689999999999999999999999999999887
Q ss_pred -----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 78 -----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 78 -----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+|||||+|.+ ++|.+|++.+||..++|+.|.|.....
T Consensus 124 ~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 124 ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 6899999999 999999999999999999999876544
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=8.3e-26 Score=226.74 Aligned_cols=114 Identities=26% Similarity=0.491 Sum_probs=103.2
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCC----CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEE
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP----NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 76 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~----~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i 76 (346)
.|||+|++.++|++|++++||..+.|+.|.|.....+... ....++|||+|||.++++++|+++|+.||.|.++.+
T Consensus 131 ~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i 210 (562)
T TIGR01628 131 YGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAV 210 (562)
T ss_pred EEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEE
Confidence 4899999999999999999999999999999876654332 245688999999999999999999999999999988
Q ss_pred E-------CCEEEEEecC-HHHHHHHHHhCCcEEC----CEEEEEEEeec
Q psy16419 77 V-------RNYGFVHIDS-PDINKCIKELNGMMVD----GKPMKVVVAGF 114 (346)
Q Consensus 77 ~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~----g~~l~v~~a~~ 114 (346)
+ +|||||+|.+ ++|.+|++.|+|..+. |+.|.|.++..
T Consensus 211 ~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~ 260 (562)
T TIGR01628 211 MKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQK 260 (562)
T ss_pred EECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccC
Confidence 7 6899999999 9999999999999999 99999988766
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=6.6e-25 Score=215.62 Aligned_cols=72 Identities=21% Similarity=0.427 Sum_probs=68.0
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEE---CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 43 PTTKVFVGNLSD-NTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 43 ~~~~lfV~nLp~-~~~e~~L~~~F~~~G~v~~~~i~---~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
++++|||+||++ .+++++|+++|+.||.|.+|+|+ +|||||+|.+ ++|..|+..|||..|.|++|+|.+++.
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 456999999998 69999999999999999999998 6999999999 999999999999999999999999876
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.93 E-value=2.1e-25 Score=218.82 Aligned_cols=107 Identities=22% Similarity=0.289 Sum_probs=91.7
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeC-CeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCC-eEEEEEE-
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVN-EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGT-VVECDIV- 77 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~-g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~-v~~~~i~- 77 (346)
+|||+|.+.++|++||+.||+..+. |+.|.|..+. ..++|||+|||.++++++|.++|++++. ++++.+.
T Consensus 101 faFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~-------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~ 173 (578)
T TIGR01648 101 YAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV-------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYH 173 (578)
T ss_pred eEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc-------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEec
Confidence 4899999999999999999998885 7887776553 3688999999999999999999999964 4454442
Q ss_pred --------CCEEEEEecC-HHHHHHHHHhCC--cEECCEEEEEEEeec
Q psy16419 78 --------RNYGFVHIDS-PDINKCIKELNG--MMVDGKPMKVVVAGF 114 (346)
Q Consensus 78 --------~g~afV~f~~-~~a~~Ai~~l~g--~~~~g~~l~v~~a~~ 114 (346)
+|||||+|.+ ++|..|++.|+. ..+.|+.|.|+|+.+
T Consensus 174 ~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p 221 (578)
T TIGR01648 174 SAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEP 221 (578)
T ss_pred cccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecc
Confidence 7999999999 999999998864 467899999999887
No 9
>KOG0109|consensus
Probab=99.93 E-value=2.3e-25 Score=193.90 Aligned_cols=145 Identities=34% Similarity=0.589 Sum_probs=136.0
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEECCEE
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYG 81 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~~g~a 81 (346)
|||..+++..|+.|++.|+|.+|+|..|.|+.++++. ...++|+|+||.+.++.+||+..|++||+|.+|+|.|+|+
T Consensus 39 gFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs---k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkdy~ 115 (346)
T KOG0109|consen 39 GFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS---KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKDYA 115 (346)
T ss_pred ceEEeecccccHHHHhhcccceecceEEEEEeccccC---CCccccccCCCCccccCHHHhhhhcccCCceeeeeeccee
Confidence 8999999999999999999999999999999999874 5689999999999999999999999999999999999999
Q ss_pred EEEecC-HHHHHHHHHhCCcEECCEEEEEEEeeccCCCC-CccCccccccCCCCCCCCCCCCCCCCCCCC
Q psy16419 82 FVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFISSIL-SCLNVIFFIRCGRGGHWSKECPRAGNFRSS 149 (346)
Q Consensus 82 fV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 149 (346)
||+|+. ++|..|++.||+.++.|++++|..+.++-|.. |++++..||+||+.|||+++||....++-.
T Consensus 116 fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrtapgmgDq~~cyrcGkeghwskEcP~~~~~rva 185 (346)
T KOG0109|consen 116 FVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRTGRVA 185 (346)
T ss_pred EEEEeeccchHHHHhcccccccccceeeeeeeccccccCCCCCCHHHheeccccccccccCCccCCCccc
Confidence 999999 99999999999999999999999999865554 889999999999999999999987776643
No 10
>KOG0127|consensus
Probab=99.92 E-value=3.7e-24 Score=200.19 Aligned_cols=118 Identities=23% Similarity=0.388 Sum_probs=106.8
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCC-------------------------CCCcEEEEcCCCCC
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN-------------------------TPTTKVFVGNLSDN 55 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~-------------------------~~~~~lfV~nLp~~ 55 (346)
+|||.|+=.|+++.|++.+++..+.|+.|.|..+..+.... .+..+|.|.|||+.
T Consensus 49 fgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~ 128 (678)
T KOG0127|consen 49 FGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFK 128 (678)
T ss_pred ccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcc
Confidence 58999999999999999999999999999999887543211 23578999999999
Q ss_pred CCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeeccCCC
Q psy16419 56 TRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFISSI 118 (346)
Q Consensus 56 ~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 118 (346)
+.+.+|+.+|+.||.|.+|.|+ .|||||.|.+ .+|..|++.+|+.+|+||+|-|.||-++...
T Consensus 129 ~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 129 CKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTY 199 (678)
T ss_pred cCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccc
Confidence 9999999999999999999998 6999999999 9999999999999999999999999886543
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.92 E-value=2.6e-24 Score=201.15 Aligned_cols=73 Identities=33% Similarity=0.512 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
...++|||+|||+++++++|+++|+.||+|++|+|+ +|||||+|.+ ++|++|++.||+..+.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 568899999999999999999999999999999997 5899999999 9999999999999999999999887
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
++
T Consensus 185 ~p 186 (346)
T TIGR01659 185 RP 186 (346)
T ss_pred cc
Confidence 66
No 12
>KOG0109|consensus
Probab=99.91 E-value=8.5e-25 Score=190.34 Aligned_cols=70 Identities=41% Similarity=0.805 Sum_probs=67.9
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEECCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 45 ~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.+|||||||..+++.+|+.+|++||+|.+|+|+|.||||+.++ ..|+.||..|+|..|+|..|.|+.++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 5799999999999999999999999999999999999999999 999999999999999999999998877
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.90 E-value=7.3e-23 Score=203.28 Aligned_cols=113 Identities=19% Similarity=0.299 Sum_probs=99.5
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC----------------------------CCCCCcEEEEcCC
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG----------------------------PNTPTTKVFVGNL 52 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~----------------------------~~~~~~~lfV~nL 52 (346)
+|||+|.+.++|++||+ |+|..|.|+.|.|........ ......+|||+||
T Consensus 225 ~afVeF~~~e~A~~Al~-l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 303 (509)
T TIGR01642 225 FAFLEFRTVEEATFAMA-LDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNL 303 (509)
T ss_pred EEEEEeCCHHHHhhhhc-CCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCC
Confidence 48999999999999995 999999999999975432110 0123578999999
Q ss_pred CCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 53 SDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 53 p~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
|..+++++|+++|+.||.|..+.|+ +|||||+|.+ ++|..|+..|||..|+|+.|.|.++..
T Consensus 304 p~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 304 PLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 9999999999999999999999886 6999999999 999999999999999999999999876
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=1.1e-21 Score=192.22 Aligned_cols=113 Identities=24% Similarity=0.491 Sum_probs=101.1
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC-----------CCCCCcEEEEcCCCCCCCHHHHHHhhcCCC
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-----------PNTPTTKVFVGNLSDNTRAPEVRELFVPYG 69 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~-----------~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G 69 (346)
+|||+|.+.++|++||. |+|..+.|++|.|........ .....++|||+|||..+++++|+++|++||
T Consensus 133 ~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G 211 (457)
T TIGR01622 133 VAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFG 211 (457)
T ss_pred EEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcC
Confidence 58999999999999997 999999999999987543211 112358999999999999999999999999
Q ss_pred CeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 70 TVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 70 ~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.|..|.++ +|||||+|.+ ++|.+|+..|||..|.|++|+|.++..
T Consensus 212 ~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 212 DIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 99999887 5899999999 999999999999999999999999875
No 15
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.89 E-value=2.4e-22 Score=190.37 Aligned_cols=72 Identities=32% Similarity=0.559 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
+.++|||+|||+.+++++|+++|+.||+|.+|+|+ +|||||+|.+ ++|.+||+.|||..+.|++|+|++++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36899999999999999999999999999999997 5899999999 99999999999999999999999987
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
+
T Consensus 82 ~ 82 (352)
T TIGR01661 82 P 82 (352)
T ss_pred c
Confidence 7
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.88 E-value=2.9e-22 Score=197.06 Aligned_cols=71 Identities=24% Similarity=0.528 Sum_probs=66.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
...++|||+|||+++++++|+++|++||.|.+|.|+ +|||||+|.+ ++|++|++.|||..++|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 457899999999999999999999999999999986 7999999999 9999999999999999999999753
No 17
>KOG0148|consensus
Probab=99.88 E-value=2.9e-22 Score=173.02 Aligned_cols=87 Identities=29% Similarity=0.544 Sum_probs=75.5
Q ss_pred eeEEeecCCCCCCC----CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHH
Q psy16419 28 PLKIEAATSRKGPN----TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCI 94 (346)
Q Consensus 28 ~i~v~~~~~~~~~~----~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai 94 (346)
.|.|.++.....++ .....+||+.|...++-++|++.|.+||+|.+++|+ ||||||.|.. ++|+.||
T Consensus 42 e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI 121 (321)
T KOG0148|consen 42 ELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAI 121 (321)
T ss_pred hhccccccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHH
Confidence 45666655443322 224569999999999999999999999999999998 7999999999 9999999
Q ss_pred HHhCCcEECCEEEEEEEeec
Q psy16419 95 KELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 95 ~~l~g~~~~g~~l~v~~a~~ 114 (346)
..|||..|++|.|+..|+..
T Consensus 122 ~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 122 QQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred HHhCCeeeccceeecccccc
Confidence 99999999999999999977
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.87 E-value=2.1e-21 Score=190.73 Aligned_cols=114 Identities=22% Similarity=0.348 Sum_probs=103.9
Q ss_pred CeEEEecCHHHHHHHHHHhCC--CeeCCeeeEEeecCCCCCCC----CCCcEEEEcCCCCCCCHHHHHHhhcCC--CCeE
Q psy16419 1 MSSGHMENDEEGRTAIKELNG--QIVNEKPLKIEAATSRKGPN----TPTTKVFVGNLSDNTRAPEVRELFVPY--GTVV 72 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng--~~l~g~~i~v~~~~~~~~~~----~~~~~lfV~nLp~~~~e~~L~~~F~~~--G~v~ 72 (346)
.|||+|+++++|++|+++|+. ..++|+.|.|.++.+..... ...++|||+||+.++++++|+++|++| |.|+
T Consensus 184 FAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~ 263 (578)
T TIGR01648 184 FAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVE 263 (578)
T ss_pred eEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceE
Confidence 489999999999999998864 46889999999988765332 345789999999999999999999999 9999
Q ss_pred EEEEECCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 73 ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 73 ~~~i~~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+|.++++||||+|.+ ++|++|++.||+.+|+|+.|+|.++++
T Consensus 264 rV~~~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 264 RVKKIRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred EEEeecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 999999999999999 999999999999999999999999988
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.86 E-value=8.5e-21 Score=177.53 Aligned_cols=116 Identities=26% Similarity=0.444 Sum_probs=104.3
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 77 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--- 77 (346)
.|||+|.++++|++|++.||+..|.+++|.|.++.+.... ...++|||+|||..+++++|+++|++||.|+++.|+
T Consensus 151 yaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~-~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~ 229 (346)
T TIGR01659 151 YAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGES-IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK 229 (346)
T ss_pred EEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccc-cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC
Confidence 4899999999999999999999999999999988754332 346789999999999999999999999999999887
Q ss_pred -----CCEEEEEecC-HHHHHHHHHhCCcEECC--EEEEEEEeeccCC
Q psy16419 78 -----RNYGFVHIDS-PDINKCIKELNGMMVDG--KPMKVVVAGFISS 117 (346)
Q Consensus 78 -----~g~afV~f~~-~~a~~Ai~~l~g~~~~g--~~l~v~~a~~~~~ 117 (346)
|+||||+|.+ ++|++||+.||+..+.+ ++|+|++++...+
T Consensus 230 ~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 230 LTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 5899999999 99999999999999876 7899999887433
No 20
>KOG0144|consensus
Probab=99.86 E-value=3.4e-21 Score=175.99 Aligned_cols=115 Identities=28% Similarity=0.459 Sum_probs=103.6
Q ss_pred eEEEecCHHHHHHHHHHhCC-CeeCC--eeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-
Q psy16419 2 SSGHMENDEEGRTAIKELNG-QIVNE--KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV- 77 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng-~~l~g--~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~- 77 (346)
.||.|.+.++|.+|+.+|++ +.|.| .+|.|+++...+++-....+||||-|++.++|.|++++|++||.|++|.|+
T Consensus 79 CFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilr 158 (510)
T KOG0144|consen 79 CFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILR 158 (510)
T ss_pred EEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhhee
Confidence 59999999999999999977 66776 678888998877766678999999999999999999999999999999998
Q ss_pred ------CCEEEEEecC-HHHHHHHHHhCCc-EECC--EEEEEEEeeccC
Q psy16419 78 ------RNYGFVHIDS-PDINKCIKELNGM-MVDG--KPMKVVVAGFIS 116 (346)
Q Consensus 78 ------~g~afV~f~~-~~a~~Ai~~l~g~-~~~g--~~l~v~~a~~~~ 116 (346)
||||||.|.+ +.|..||+.|||. .+.| .+|.|+|+.+++
T Consensus 159 d~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqk 207 (510)
T KOG0144|consen 159 DPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQK 207 (510)
T ss_pred cccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCC
Confidence 8999999999 9999999999996 4555 599999999844
No 21
>KOG0123|consensus
Probab=99.86 E-value=4.7e-21 Score=180.19 Aligned_cols=106 Identities=24% Similarity=0.510 Sum_probs=99.7
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE----
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---- 77 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~---- 77 (346)
|||.|.++++|++||++||...+.|++|++.|..... +.|||.||+++++..+|+++|+.||+|.+|++.
T Consensus 40 ~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~ 113 (369)
T KOG0123|consen 40 AYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN 113 (369)
T ss_pred EEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC
Confidence 8999999999999999999999999999999987543 339999999999999999999999999999998
Q ss_pred --CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 78 --RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 78 --~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+|| ||+|++ ++|.+|+..|||..+.|++|.|.....
T Consensus 114 g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 114 GSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred Cceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 789 999999 999999999999999999999988766
No 22
>KOG0148|consensus
Probab=99.84 E-value=2e-20 Score=161.64 Aligned_cols=113 Identities=22% Similarity=0.446 Sum_probs=106.5
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC---------------CCCCCcEEEEcCCCCCCCHHHHHHhhc
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG---------------PNTPTTKVFVGNLSDNTRAPEVRELFV 66 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~---------------~~~~~~~lfV~nLp~~~~e~~L~~~F~ 66 (346)
|||.|.+.++|++||..|||..|.++.|+-.|+..+.. .+..+|+|||||++..++|++|++.|+
T Consensus 107 gFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs 186 (321)
T KOG0148|consen 107 GFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFS 186 (321)
T ss_pred eEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcc
Confidence 89999999999999999999999999999999886542 125689999999999999999999999
Q ss_pred CCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 67 PYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 67 ~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.||.|.+|++. +||+||.|++ |.|..||..||+.+|.|..++|.|.+.
T Consensus 187 ~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 187 PFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred cCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 99999999998 8999999999 999999999999999999999999887
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.84 E-value=4.2e-20 Score=181.16 Aligned_cols=72 Identities=24% Similarity=0.401 Sum_probs=66.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
....+|||+|||..+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|+. |+|..+.|++|.|..+
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 457899999999999999999999999999999997 6899999999 99999997 8999999999999876
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
..
T Consensus 166 ~~ 167 (457)
T TIGR01622 166 QA 167 (457)
T ss_pred ch
Confidence 55
No 24
>KOG0144|consensus
Probab=99.82 E-value=1.1e-20 Score=172.59 Aligned_cols=74 Identities=27% Similarity=0.530 Sum_probs=64.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCc-EECC--EEEE
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGM-MVDG--KPMK 108 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~-~~~g--~~l~ 108 (346)
+....++|||.||..++|+||+++|++||.|.+|.|+ +|||||.|.+ ++|.+|+..|+.. .|.| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 3567899999999999999999999999999999988 7999999999 9999999999876 4444 4677
Q ss_pred EEEeec
Q psy16419 109 VVVAGF 114 (346)
Q Consensus 109 v~~a~~ 114 (346)
|+++..
T Consensus 111 vk~Ad~ 116 (510)
T KOG0144|consen 111 VKYADG 116 (510)
T ss_pred ecccch
Confidence 766655
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.80 E-value=5.5e-19 Score=175.53 Aligned_cols=71 Identities=14% Similarity=0.324 Sum_probs=61.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCC------------CCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEECCEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPY------------GTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKP 106 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~------------G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~ 106 (346)
....+|||+|||+.+++++|+++|..+ +.|..+.+. +|||||+|.+ ++|..||. |||..+.|+.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~~~g~~ 251 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMA-LDSIIYSNVF 251 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhc-CCCeEeeCce
Confidence 457899999999999999999999864 355666655 8999999999 99999995 9999999999
Q ss_pred EEEEEee
Q psy16419 107 MKVVVAG 113 (346)
Q Consensus 107 l~v~~a~ 113 (346)
|+|....
T Consensus 252 l~v~r~~ 258 (509)
T TIGR01642 252 LKIRRPH 258 (509)
T ss_pred eEecCcc
Confidence 9986543
No 26
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.80 E-value=5.9e-19 Score=173.81 Aligned_cols=114 Identities=17% Similarity=0.426 Sum_probs=102.8
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC----------CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCC
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG----------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGT 70 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~----------~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~ 70 (346)
+|||+|++.++|++|++.|||..|.|+.|.|.+...... .....++|||+||++++++++|+++|+.||.
T Consensus 151 fAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~ 230 (612)
T TIGR01645 151 FAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE 230 (612)
T ss_pred eEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC
Confidence 489999999999999999999999999999986543211 1134579999999999999999999999999
Q ss_pred eEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 71 VVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 71 v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
|.+++|. ||||||+|.+ ++|.+|+..||+..++|+.|+|.++..
T Consensus 231 I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 231 IVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred eeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 9999987 7899999999 999999999999999999999998876
No 27
>KOG0123|consensus
Probab=99.79 E-value=4e-19 Score=167.18 Aligned_cols=112 Identities=27% Similarity=0.517 Sum_probs=102.4
Q ss_pred EEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCC-------CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEE
Q psy16419 3 SGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN-------TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 75 (346)
Q Consensus 3 FV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~-------~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~ 75 (346)
||+|+++++|++|++++||..+.|++|.|.....+..+. ...+.+||.|++.+++++.|.++|..+|.|..+.
T Consensus 119 FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~ 198 (369)
T KOG0123|consen 119 FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVA 198 (369)
T ss_pred EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEE
Confidence 999999999999999999999999999998877655432 4467899999999999999999999999999999
Q ss_pred EE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 76 IV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 76 i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
++ ++|+||.|.+ ++|..|+..|++..+.+..+.|..+..
T Consensus 199 v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 199 VMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred EeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 88 7999999999 999999999999999999988877766
No 28
>KOG0110|consensus
Probab=99.78 E-value=1.4e-18 Score=167.88 Aligned_cols=113 Identities=27% Similarity=0.407 Sum_probs=97.4
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC----------------C-------C------------------
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK----------------G-------P------------------ 40 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~----------------~-------~------------------ 40 (346)
|+|+|.+..+|++|++.|....+...++++.++.... . .
T Consensus 424 aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~s 503 (725)
T KOG0110|consen 424 AIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEES 503 (725)
T ss_pred eeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccc
Confidence 7899999999999999999998888888887654100 0 0
Q ss_pred --------CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-----------CCEEEEEecC-HHHHHHHHHhCCc
Q psy16419 41 --------NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----------RNYGFVHIDS-PDINKCIKELNGM 100 (346)
Q Consensus 41 --------~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-----------~g~afV~f~~-~~a~~Ai~~l~g~ 100 (346)
....++|||.||+++++.++|..+|...|.|.++.|. .|||||+|.+ ++|+.|++.|+|+
T Consensus 504 s~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt 583 (725)
T KOG0110|consen 504 SLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT 583 (725)
T ss_pred cchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc
Confidence 0123459999999999999999999999999999887 2999999999 9999999999999
Q ss_pred EECCEEEEEEEeec
Q psy16419 101 MVDGKPMKVVVAGF 114 (346)
Q Consensus 101 ~~~g~~l~v~~a~~ 114 (346)
.|+|+.|.|+++..
T Consensus 584 vldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 584 VLDGHKLELKISEN 597 (725)
T ss_pred eecCceEEEEeccC
Confidence 99999999999873
No 29
>KOG0131|consensus
Probab=99.76 E-value=1.1e-18 Score=142.93 Aligned_cols=73 Identities=32% Similarity=0.535 Sum_probs=68.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
....+|||+||+..++++.|.++|-+.|+|+++.|. +|||||+|.+ ++|+-|++.||...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 446899999999999999999999999999999998 7999999999 9999999999999999999999887
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
..
T Consensus 87 s~ 88 (203)
T KOG0131|consen 87 SA 88 (203)
T ss_pred cc
Confidence 65
No 30
>KOG0105|consensus
Probab=99.75 E-value=1.6e-17 Score=136.26 Aligned_cols=73 Identities=26% Similarity=0.511 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
...++|||+|||.++.+.||+++|.+||.|.+|.+. ..||||+|++ .+|+.||..-+|..++|..|+|+++..
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 357899999999999999999999999999999998 4799999999 999999999999999999999999877
No 31
>KOG0145|consensus
Probab=99.75 E-value=3.5e-18 Score=146.98 Aligned_cols=73 Identities=34% Similarity=0.547 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
...++|.|.-||..+|++||+.+|...|+|++|+++ -|||||.|.+ ++|++|+..|||..+..+.|+|.++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 456789999999999999999999999999999998 4899999999 9999999999999999999999999
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
++
T Consensus 119 RP 120 (360)
T KOG0145|consen 119 RP 120 (360)
T ss_pred cC
Confidence 98
No 32
>KOG0117|consensus
Probab=99.75 E-value=5e-18 Score=156.04 Aligned_cols=115 Identities=26% Similarity=0.442 Sum_probs=106.2
Q ss_pred CeEEEecCHHHHHHHHHHhC-C-CeeCCeeeEEeecCCCCCCCCC----CcEEEEcCCCCCCCHHHHHHhhcCCCCeEEE
Q psy16419 1 MSSGHMENDEEGRTAIKELN-G-QIVNEKPLKIEAATSRKGPNTP----TTKVFVGNLSDNTRAPEVRELFVPYGTVVEC 74 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~ln-g-~~l~g~~i~v~~~~~~~~~~~~----~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~ 74 (346)
+|||+|++...|..|.++|- + ..|+|..+.|.|+.++.+...+ -..|||.||+.++||+.|+++|++||.|++|
T Consensus 210 FaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRV 289 (506)
T KOG0117|consen 210 FAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERV 289 (506)
T ss_pred eEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEe
Confidence 58999999999999998874 3 6789999999999998876533 4579999999999999999999999999999
Q ss_pred EEECCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeecc
Q psy16419 75 DIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFI 115 (346)
Q Consensus 75 ~i~~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 115 (346)
+.+|.||||+|.+ ++|.+|++.+||++|+|..|.|.+|++.
T Consensus 290 kk~rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 290 KKPRDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred ecccceeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 9999999999999 9999999999999999999999999983
No 33
>KOG0127|consensus
Probab=99.74 E-value=1e-17 Score=157.35 Aligned_cols=71 Identities=23% Similarity=0.412 Sum_probs=68.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+.||||++||++++.++|.++|+.+|+|..|.+. ||||||.|.- +++++|+...++..+.|+.|.|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 4899999999999999999999999999999888 8999999999 999999999999999999999999988
No 34
>KOG0124|consensus
Probab=99.72 E-value=3.7e-18 Score=153.13 Aligned_cols=67 Identities=25% Similarity=0.578 Sum_probs=64.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEE
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVV 110 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~ 110 (346)
.|+||||.|.+++.|+.|+..|..||+|+++.+. |||+||+|+- |.|+-|++.|||.+++||.|+|.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 6899999999999999999999999999999886 8999999999 99999999999999999999985
No 35
>KOG0107|consensus
Probab=99.72 E-value=8.4e-17 Score=131.04 Aligned_cols=101 Identities=25% Similarity=0.439 Sum_probs=87.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeeccCC
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFISS 117 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~---~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 117 (346)
...++||||||+..+++.||+.+|..||+|..|.|. .|||||+|++ .+|++|+..|||..|+|..|+|+++..+.+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 347899999999999999999999999999999887 7999999999 999999999999999999999999887544
Q ss_pred CCC------ccCccccccCCCCCCCCCCCCC
Q psy16419 118 ILS------CLNVIFFIRCGRGGHWSKECPR 142 (346)
Q Consensus 118 ~~~------~~~~~~~~~~~~~g~~~~~~~~ 142 (346)
..+ ..+...|+.||..|||.+.|..
T Consensus 88 ~~r~gg~~~~~g~~~~~r~G~rg~~~r~~~~ 118 (195)
T KOG0107|consen 88 GSRRGGSRPPRGRGFCYRCGERGHIGRNCKD 118 (195)
T ss_pred ccccCCCCCcccccccccCCCcccccccccc
Confidence 321 1223457899999999988876
No 36
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=1.8e-16 Score=130.38 Aligned_cols=75 Identities=29% Similarity=0.568 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
...++|||+|||+.++|++|+++|++||.|.++.|+ +|||||+|.+ ++|++|++.||+..|+|++|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 457899999999999999999999999999999987 6999999999 9999999999999999999999999
Q ss_pred eccC
Q psy16419 113 GFIS 116 (346)
Q Consensus 113 ~~~~ 116 (346)
..+.
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 8743
No 37
>KOG0131|consensus
Probab=99.71 E-value=2.6e-17 Score=134.77 Aligned_cols=114 Identities=22% Similarity=0.398 Sum_probs=104.6
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEE-EEE--
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC-DIV-- 77 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~-~i~-- 77 (346)
.|||||.++|+|+.|++-||...|.|++|+|..+.........+.+|||+||.+.++|..|.+.|+.||.+.+. .|+
T Consensus 53 ygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd 132 (203)
T KOG0131|consen 53 YGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRD 132 (203)
T ss_pred eeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCccccc
Confidence 48999999999999999999999999999999988555555667899999999999999999999999998763 444
Q ss_pred ------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 78 ------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 78 ------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
++||||.|++ +.+.+|+..|||..++.+++.|.++..
T Consensus 133 ~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 133 PDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFK 176 (203)
T ss_pred ccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEe
Confidence 7899999999 999999999999999999999999987
No 38
>KOG4205|consensus
Probab=99.67 E-value=2e-16 Score=144.19 Aligned_cols=71 Identities=27% Similarity=0.541 Sum_probs=63.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
..++|||++|+++++++.|++.|.+||+|.+|.++ |||+||+|++ +...+++. ..-+.|+|+.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 57899999999999999999999999999999999 5999999999 77777766 45678999999998888
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
+
T Consensus 84 ~ 84 (311)
T KOG4205|consen 84 S 84 (311)
T ss_pred C
Confidence 7
No 39
>KOG0110|consensus
Probab=99.64 E-value=5.6e-16 Score=150.05 Aligned_cols=114 Identities=21% Similarity=0.397 Sum_probs=105.9
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecC--------CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeE
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAAT--------SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVV 72 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~--------~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~ 72 (346)
+|||+|.+.++|+.|++.|+|..|.|+.|.|..+. .+.......++|+|.|||+..+..+++.+|..||.|.
T Consensus 562 fgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlk 641 (725)
T KOG0110|consen 562 FGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLK 641 (725)
T ss_pred eeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhccccee
Confidence 58999999999999999999999999999999988 3333345578999999999999999999999999999
Q ss_pred EEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 73 ECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 73 ~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+|+|+ +|||||+|-+ .+|.+|+.+|..+.+.||.|.++|+..
T Consensus 642 svRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 642 SVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred eeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 99998 7999999999 999999999999999999999999987
No 40
>KOG0146|consensus
Probab=99.62 E-value=9.7e-16 Score=132.51 Aligned_cols=88 Identities=28% Similarity=0.582 Sum_probs=76.0
Q ss_pred CeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHh
Q psy16419 26 EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKEL 97 (346)
Q Consensus 26 g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l 97 (346)
.++|.|+++...... .+.++||||-|.+.-+|+|++.+|..||.|.+|.+. |||+||.|.+ .+|..||..|
T Consensus 2 nrpiqvkpadsesrg-~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aL 80 (371)
T KOG0146|consen 2 NRPIQVKPADSESRG-GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINAL 80 (371)
T ss_pred CCCccccccccccCC-ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHh
Confidence 467788887755433 467899999999999999999999999999999988 8999999999 9999999999
Q ss_pred CCcE-ECC--EEEEEEEeec
Q psy16419 98 NGMM-VDG--KPMKVVVAGF 114 (346)
Q Consensus 98 ~g~~-~~g--~~l~v~~a~~ 114 (346)
+|.. +-| ..|.|+++..
T Consensus 81 HgSqTmpGASSSLVVK~ADT 100 (371)
T KOG0146|consen 81 HGSQTMPGASSSLVVKFADT 100 (371)
T ss_pred cccccCCCCccceEEEeccc
Confidence 9964 444 5799999877
No 41
>KOG1457|consensus
Probab=99.59 E-value=2.4e-14 Score=120.94 Aligned_cols=73 Identities=19% Similarity=0.320 Sum_probs=65.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---------CCEEEEEecC-HHHHHHHHHhCCcEEC---CEEEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---------RNYGFVHIDS-PDINKCIKELNGMMVD---GKPMK 108 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~---------~g~afV~f~~-~~a~~Ai~~l~g~~~~---g~~l~ 108 (346)
..-++|||.+||.++...||+.+|..|-.-+.+.+. +-+|||.|.+ .+|..|++.|||..++ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 346899999999999999999999999777776666 3699999999 9999999999999996 78999
Q ss_pred EEEeec
Q psy16419 109 VVVAGF 114 (346)
Q Consensus 109 v~~a~~ 114 (346)
|++++.
T Consensus 112 iElAKS 117 (284)
T KOG1457|consen 112 IELAKS 117 (284)
T ss_pred eeehhc
Confidence 999988
No 42
>KOG0124|consensus
Probab=99.57 E-value=5.9e-15 Score=132.68 Aligned_cols=114 Identities=17% Similarity=0.428 Sum_probs=102.8
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCC----------CCCCcEEEEcCCCCCCCHHHHHHhhcCCCC
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP----------NTPTTKVFVGNLSDNTRAPEVRELFVPYGT 70 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~----------~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~ 70 (346)
+|||||+-+|.|+.|++.|||..+.|+.|+|....+-... .....+|||..+.++++|+||+..|+.||+
T Consensus 157 FAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~ 236 (544)
T KOG0124|consen 157 FAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE 236 (544)
T ss_pred eEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc
Confidence 5899999999999999999999999999999876543321 145789999999999999999999999999
Q ss_pred eEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 71 VVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 71 v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
|++|.+. ||||||+|.+ .+...||..||-..++|.-|+|..+-.
T Consensus 237 I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 237 IVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred eeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 9999997 8999999999 999999999999999999999987654
No 43
>KOG0106|consensus
Probab=99.51 E-value=2.5e-14 Score=122.98 Aligned_cols=70 Identities=26% Similarity=0.555 Sum_probs=67.3
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEECCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 45 ~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.++||++||+.+.+.+|+++|..||.+.++.+..||+||+|.+ .+|..|+..+|+..|+|..+.|+++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeecccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 4799999999999999999999999999999999999999999 999999999999999999899999887
No 44
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.50 E-value=9.9e-14 Score=99.47 Aligned_cols=62 Identities=31% Similarity=0.744 Sum_probs=59.5
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEE
Q psy16419 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMK 108 (346)
Q Consensus 47 lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~ 108 (346)
|||+|||..+++++|+++|++||.|..+.+. +++|||+|.+ ++|++|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999887 6899999999 999999999999999999985
No 45
>KOG0125|consensus
Probab=99.50 E-value=5.1e-14 Score=125.28 Aligned_cols=92 Identities=24% Similarity=0.569 Sum_probs=77.2
Q ss_pred CeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE------CCEEEEEecC-HHHHHHH
Q psy16419 22 QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCI 94 (346)
Q Consensus 22 ~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~------~g~afV~f~~-~~a~~Ai 94 (346)
....|..+.+....... .+...++|+|+|||+...|.||+.+|.+||+|.+|.|+ ||||||+|++ ++|++|-
T Consensus 75 ~~t~g~~~~~~~st~s~-s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRAR 153 (376)
T KOG0125|consen 75 APTDGQPIQTQPSTNSS-SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRAR 153 (376)
T ss_pred CCCCCCccccCCCCcCC-CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHH
Confidence 33444444444333222 22456799999999999999999999999999999998 8999999999 9999999
Q ss_pred HHhCCcEECCEEEEEEEeec
Q psy16419 95 KELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 95 ~~l~g~~~~g~~l~v~~a~~ 114 (346)
++|||..+.||+|+|..+..
T Consensus 154 a~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 154 AELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred HHhhcceeeceEEEEeccch
Confidence 99999999999999999887
No 46
>KOG4206|consensus
Probab=99.48 E-value=8.2e-13 Score=112.60 Aligned_cols=71 Identities=23% Similarity=0.515 Sum_probs=67.2
Q ss_pred CcEEEEcCCCCCCCHHHHHH----hhcCCCCeEEEEEE-----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 44 TTKVFVGNLSDNTRAPEVRE----LFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~----~F~~~G~v~~~~i~-----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
+.||||.||...+..++|+. +|++||.|.+|... ||-|||.|.+ +.|..|+..|+|..+.|++++|.+|+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 44999999999999999887 99999999999877 8999999999 99999999999999999999999998
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
.
T Consensus 89 s 89 (221)
T KOG4206|consen 89 S 89 (221)
T ss_pred C
Confidence 8
No 47
>KOG0121|consensus
Probab=99.47 E-value=1.1e-13 Score=107.18 Aligned_cols=73 Identities=25% Similarity=0.385 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
..+++||||||+..++|++|.++|+++|.|..|.+- .|||||+|.+ ++|+.|+.-++|..++.++|++.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 458999999999999999999999999999998765 5999999999 9999999999999999999999997
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
..
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 55
No 48
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.42 E-value=6.6e-13 Score=117.19 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=66.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.++|||+|||+.+++++|+++|+.||.|.+|.|. +|||||+|.+ ++|+.|+. |||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 5799999999999999999999999999999997 6999999999 99999996 999999999999999875
No 49
>KOG4212|consensus
Probab=99.37 E-value=1.2e-11 Score=113.87 Aligned_cols=72 Identities=21% Similarity=0.366 Sum_probs=66.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhc-CCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFV-PYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~-~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
..+.+||.|||+++.+++|+++|. +.|+|+.|.+. ||||.|+|.+ |.+++|++.||...+.||+|.|+...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 345699999999999999999995 77999999988 8999999999 99999999999999999999999876
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 6
No 50
>KOG0147|consensus
Probab=99.37 E-value=1.4e-12 Score=123.46 Aligned_cols=113 Identities=25% Similarity=0.472 Sum_probs=99.6
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC-------------CCCCCcEEEEcCCCCCCCHHHHHHhhcC
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-------------PNTPTTKVFVGNLSDNTRAPEVRELFVP 67 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~-------------~~~~~~~lfV~nLp~~~~e~~L~~~F~~ 67 (346)
+|||+|.|.+....||. |.|..+.|.+|.|......+. -..+..+||||||-..+++++|+.+|+.
T Consensus 223 i~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifep 301 (549)
T KOG0147|consen 223 IAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEP 301 (549)
T ss_pred eeEEEEecccchhhHhh-hcCCcccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccC
Confidence 58999999999999996 999999999999986542211 1134455999999999999999999999
Q ss_pred CCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 68 YGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 68 ~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
||.|..|.++ +|||||+|.+ ++|.+|+..|||.+|.|+.|+|.....
T Consensus 302 fg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 302 FGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred cccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 9999999887 7999999999 999999999999999999999988665
No 51
>KOG1190|consensus
Probab=99.37 E-value=2e-11 Score=111.72 Aligned_cols=113 Identities=19% Similarity=0.383 Sum_probs=94.1
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCC--eeeEEeecC----------CCCC------------------------------
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNE--KPLKIEAAT----------SRKG------------------------------ 39 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g--~~i~v~~~~----------~~~~------------------------------ 39 (346)
|.|+|.+.+.|+.|...|+|+.|.. +.+++.++. .+.+
T Consensus 191 ALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~ 270 (492)
T KOG1190|consen 191 ALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAV 270 (492)
T ss_pred hhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccc
Confidence 6799999999999999999988863 566665443 1100
Q ss_pred ---C-----------------CCC--CcEEEEcCCC-CCCCHHHHHHhhcCCCCeEEEEEE---CCEEEEEecC-HHHHH
Q psy16419 40 ---P-----------------NTP--TTKVFVGNLS-DNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINK 92 (346)
Q Consensus 40 ---~-----------------~~~--~~~lfV~nLp-~~~~e~~L~~~F~~~G~v~~~~i~---~g~afV~f~~-~~a~~ 92 (346)
+ ..+ ++.|.|.||. ..+|.+.|..+|+-||.|.+|+|. +.-|.|.|.+ ..|+-
T Consensus 271 ~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqL 350 (492)
T KOG1190|consen 271 HGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQL 350 (492)
T ss_pred cCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHH
Confidence 0 011 4778889885 579999999999999999999999 6789999999 99999
Q ss_pred HHHHhCCcEECCEEEEEEEeec
Q psy16419 93 CIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 93 Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
|++.|+|..+.|++|+|.+++.
T Consensus 351 A~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 351 AMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred HHHHhhcceecCceEEEeeccC
Confidence 9999999999999999999887
No 52
>KOG4207|consensus
Probab=99.36 E-value=3.3e-12 Score=106.98 Aligned_cols=73 Identities=27% Similarity=0.541 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
...+.|-|-||.+.++.++|+.+|++||.|.+|.|. +|||||.|.+ .+|++|++.|+|.+|+|+.|+|++|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 456889999999999999999999999999999998 7999999999 9999999999999999999999998
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
+-
T Consensus 91 ry 92 (256)
T KOG4207|consen 91 RY 92 (256)
T ss_pred hc
Confidence 76
No 53
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.35 E-value=5.2e-12 Score=90.81 Aligned_cols=62 Identities=29% Similarity=0.679 Sum_probs=57.0
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEE
Q psy16419 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMK 108 (346)
Q Consensus 47 lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~ 108 (346)
|||+|||+++++++|.++|+.||.|..+.+. +++|||+|.+ ++|.+|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999888 4899999999 999999999999999999875
No 54
>PLN03213 repressor of silencing 3; Provisional
Probab=99.34 E-value=3.6e-12 Score=119.03 Aligned_cols=73 Identities=21% Similarity=0.435 Sum_probs=68.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE----CCEEEEEecC---HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV----RNYGFVHIDS---PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~----~g~afV~f~~---~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
....+||||||++.+++++|+.+|+.||.|.+|.|+ ||||||+|.+ .++.+||..|||..+.|+.|+|..|++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 446899999999999999999999999999999999 8999999997 368999999999999999999999987
No 55
>KOG0122|consensus
Probab=99.32 E-value=5.5e-12 Score=108.31 Aligned_cols=73 Identities=29% Similarity=0.498 Sum_probs=69.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.+.++|-|.||+.+++|++|+++|.+||.|.++.+. ||||||.|.+ ++|.+||+.|||.-++.--|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 457889999999999999999999999999999887 8999999999 9999999999999999999999999
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
+|
T Consensus 267 kP 268 (270)
T KOG0122|consen 267 KP 268 (270)
T ss_pred CC
Confidence 98
No 56
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.31 E-value=2.5e-11 Score=109.70 Aligned_cols=70 Identities=37% Similarity=0.703 Sum_probs=66.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
..+|||+|||..+++++|+++|..||.|..+.+. +|||||+|.+ ++|..|+..+++..+.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5999999999999999999999999999988887 7999999999 99999999999999999999999965
No 57
>KOG0147|consensus
Probab=99.30 E-value=7.6e-13 Score=125.31 Aligned_cols=72 Identities=21% Similarity=0.353 Sum_probs=65.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
....++|+-.|...+++.+|+++|+.+|+|.+|.|+ +|.+||+|.+ +....||. |.|..+.|.+|.|...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 345789999999999999999999999999999998 7999999999 88888884 9999999999999887
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
..
T Consensus 256 Ea 257 (549)
T KOG0147|consen 256 EA 257 (549)
T ss_pred HH
Confidence 66
No 58
>KOG0111|consensus
Probab=99.30 E-value=2.1e-12 Score=108.99 Aligned_cols=73 Identities=25% Similarity=0.536 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
...++||||+|..+++|.-|...|-+||.|.+|.|+ ||||||+|.. |+|..||..||+.++.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 446899999999999999999999999999999998 8999999999 9999999999999999999999999
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
+|
T Consensus 88 kP 89 (298)
T KOG0111|consen 88 KP 89 (298)
T ss_pred CC
Confidence 99
No 59
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.29 E-value=1.5e-11 Score=106.92 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=65.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.+.+|||+||++.+++++|+++|+.||.|.+|.|. ++||||+|.+ ++++.|+. |+|..|.+++|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 46899999999999999999999999999999998 5899999999 99999995 999999999999987654
No 60
>KOG0114|consensus
Probab=99.28 E-value=2.1e-11 Score=91.13 Aligned_cols=73 Identities=26% Similarity=0.349 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
..+.-|||.|||+.+|.++..++|.+||.|..|+|- +|-|||.|++ .+|.+|++.|+|..++++.|.|-+..+
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 446789999999999999999999999999999997 8999999999 999999999999999999999988766
No 61
>KOG0149|consensus
Probab=99.28 E-value=4.6e-12 Score=108.35 Aligned_cols=72 Identities=29% Similarity=0.564 Sum_probs=65.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
...++||||+|++++..++|+++|++||+|++..|+ ||||||+|.+ ++|.+|++.. .-.|+||+..|.+|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchh
Confidence 456899999999999999999999999999999888 8999999999 9999999863 45789999999988
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 76
No 62
>smart00362 RRM_2 RNA recognition motif.
Probab=99.26 E-value=3.6e-11 Score=85.66 Aligned_cols=65 Identities=34% Similarity=0.707 Sum_probs=61.0
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--C----CEEEEEecC-HHHHHHHHHhCCcEECCEEEEEE
Q psy16419 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--R----NYGFVHIDS-PDINKCIKELNGMMVDGKPMKVV 110 (346)
Q Consensus 46 ~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~----g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~ 110 (346)
+|||+|||..+++++|+++|++||.|..+.+. + ++|||+|.+ ++|.+|+..+++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999888 3 899999999 99999999999999999998873
No 63
>KOG0113|consensus
Probab=99.25 E-value=9.2e-11 Score=103.50 Aligned_cols=73 Identities=26% Similarity=0.530 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.+.+||||+-|+++++|..|+..|+.||+|+.|.|+ +|||||+|++ .+...|.+..+|.+|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 678999999999999999999999999999999998 7999999999 9999999999999999999999886
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
..
T Consensus 179 Rg 180 (335)
T KOG0113|consen 179 RG 180 (335)
T ss_pred cc
Confidence 54
No 64
>KOG4212|consensus
Probab=99.25 E-value=1.1e-09 Score=101.27 Aligned_cols=113 Identities=20% Similarity=0.293 Sum_probs=94.5
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC-------------------------------------------
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------------------------------------------- 38 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~------------------------------------------- 38 (346)
|.|||+++|.++||++.||...+.|++|.|+.....+
T Consensus 89 avVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~ 168 (608)
T KOG4212|consen 89 AVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFS 168 (608)
T ss_pred eEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCC
Confidence 7899999999999999999999999999997644210
Q ss_pred --CC---------------------------------------CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE
Q psy16419 39 --GP---------------------------------------NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV 77 (346)
Q Consensus 39 --~~---------------------------------------~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~ 77 (346)
+. .+...++||+||.+.+..+.|++.|.-.|.|..+.+-
T Consensus 169 ~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~ 248 (608)
T KOG4212|consen 169 RRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFS 248 (608)
T ss_pred cccccccccccCccccccccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeecee
Confidence 00 0223579999999999999999999999999988765
Q ss_pred -------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 78 -------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 78 -------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+||+.++|.. -+|..||..+++.-+..++..++...-
T Consensus 249 idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~~~ 293 (608)
T KOG4212|consen 249 IDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRLDRI 293 (608)
T ss_pred eccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeecccc
Confidence 7999999999 999999999998777777777776443
No 65
>KOG0130|consensus
Probab=99.24 E-value=2.4e-11 Score=95.04 Aligned_cols=73 Identities=18% Similarity=0.365 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
-.+--|||.++....+|++|.+.|..||+|+.+.+. |||+.|+|++ ++|+.|+..|||..+.|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 446789999999999999999999999999999887 8999999999 9999999999999999999999998
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
-.
T Consensus 150 Fv 151 (170)
T KOG0130|consen 150 FV 151 (170)
T ss_pred Ee
Confidence 77
No 66
>KOG1456|consensus
Probab=99.23 E-value=6.6e-10 Score=100.82 Aligned_cols=113 Identities=21% Similarity=0.289 Sum_probs=97.0
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeC-C-eeeEEeecCCCCC----------------------------------------
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVN-E-KPLKIEAATSRKG---------------------------------------- 39 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~-g-~~i~v~~~~~~~~---------------------------------------- 39 (346)
|.|||++.+.|++|.+.|||..|. | ++++|+++++.+-
T Consensus 162 AmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~ 241 (494)
T KOG1456|consen 162 AMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYH 241 (494)
T ss_pred eEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCC
Confidence 789999999999999999998886 4 6888888773210
Q ss_pred -----------------------------------------CCCCCcEEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEE
Q psy16419 40 -----------------------------------------PNTPTTKVFVGNLSD-NTRAPEVRELFVPYGTVVECDIV 77 (346)
Q Consensus 40 -----------------------------------------~~~~~~~lfV~nLp~-~~~e~~L~~~F~~~G~v~~~~i~ 77 (346)
...+++.+.|-+|.. .++-+.|.++|..||.|.+|+.+
T Consensus 242 pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFm 321 (494)
T KOG1456|consen 242 PSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFM 321 (494)
T ss_pred hhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEe
Confidence 002457788999976 56778899999999999999999
Q ss_pred ---CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 78 ---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 78 ---~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.|-|.|++.+ .+.++|+..||+..+-|.+|.|..++.
T Consensus 322 kTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 322 KTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred ecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 5999999999 999999999999999999999998876
No 67
>KOG1456|consensus
Probab=99.22 E-value=1.6e-09 Score=98.28 Aligned_cols=114 Identities=18% Similarity=0.153 Sum_probs=90.4
Q ss_pred CeEEEecCHHHHHHHHHHh--CCCeeCCeeeEEeecCCCC------CCCCCCcEEEE--cCCCCCCCHHHHHHhhcCCCC
Q psy16419 1 MSSGHMENDEEGRTAIKEL--NGQIVNEKPLKIEAATSRK------GPNTPTTKVFV--GNLSDNTRAPEVRELFVPYGT 70 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~l--ng~~l~g~~i~v~~~~~~~------~~~~~~~~lfV--~nLp~~~~e~~L~~~F~~~G~ 70 (346)
||.|+|+|.+.|++++... +...+.|+.-.+.++.++. +...++..|.+ -|--+.+|-+-|..+....|+
T Consensus 69 ~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~Gk 148 (494)
T KOG1456|consen 69 QALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGK 148 (494)
T ss_pred eeeeeeccccchhhheehhccCcccccCchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCc
Confidence 6899999999999997733 4466778887777765332 22233444443 455678999999999999999
Q ss_pred eEEEEEEC--C-EEEEEecC-HHHHHHHHHhCCcEEC--CEEEEEEEeec
Q psy16419 71 VVECDIVR--N-YGFVHIDS-PDINKCIKELNGMMVD--GKPMKVVVAGF 114 (346)
Q Consensus 71 v~~~~i~~--g-~afV~f~~-~~a~~Ai~~l~g~~~~--g~~l~v~~a~~ 114 (346)
|.+|.|++ | .|.|+|++ +.|++|.+.|||..|. -.+|+|++|++
T Consensus 149 VlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 149 VLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred eEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCc
Confidence 99999983 3 69999999 9999999999999874 46999999998
No 68
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.19 E-value=1.5e-10 Score=79.45 Aligned_cols=52 Identities=37% Similarity=0.682 Sum_probs=48.5
Q ss_pred HHHhhcCCCCeEEEEEE--C-CEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 61 VRELFVPYGTVVECDIV--R-NYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 61 L~~~F~~~G~v~~~~i~--~-g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
|+++|++||+|.++.+. + ++|||+|.+ ++|..|+..|||..++|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999999 4 999999999 9999999999999999999999986
No 69
>KOG4205|consensus
Probab=99.19 E-value=2.7e-11 Score=110.75 Aligned_cols=113 Identities=23% Similarity=0.352 Sum_probs=99.3
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCC-----CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEE
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNT-----PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 75 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~-----~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~ 75 (346)
.+||+|++.+....+|. ..-+.|.|+.|.+..+.++..... ...+|||++||..++++++++.|.+||.|..+.
T Consensus 50 Fgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~ 128 (311)
T KOG4205|consen 50 FGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVV 128 (311)
T ss_pred ccceecCCCcchheeec-ccccccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeE
Confidence 47999999999999887 567889999999999998876543 345899999999999999999999999999888
Q ss_pred EE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeecc
Q psy16419 76 IV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFI 115 (346)
Q Consensus 76 i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 115 (346)
++ ++|+||.|.+ +.+.+++. ..-+.|+|+.+.|+.|.++
T Consensus 129 ~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk 176 (311)
T KOG4205|consen 129 IMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPK 176 (311)
T ss_pred EeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccch
Confidence 87 8999999999 77777665 5789999999999999884
No 70
>KOG0146|consensus
Probab=99.13 E-value=1.6e-10 Score=100.37 Aligned_cols=74 Identities=23% Similarity=0.501 Sum_probs=69.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.++|+|||-.||.+..+.||..+|-.||.|++.++. |.||||.|++ .+|+.||..|||..|+-++|+|...
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 468999999999999999999999999999998877 7999999999 9999999999999999999999988
Q ss_pred ecc
Q psy16419 113 GFI 115 (346)
Q Consensus 113 ~~~ 115 (346)
+++
T Consensus 363 RPk 365 (371)
T KOG0146|consen 363 RPK 365 (371)
T ss_pred Ccc
Confidence 873
No 71
>smart00360 RRM RNA recognition motif.
Probab=99.13 E-value=2e-10 Score=81.33 Aligned_cols=62 Identities=39% Similarity=0.756 Sum_probs=57.7
Q ss_pred EcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEE
Q psy16419 49 VGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVV 110 (346)
Q Consensus 49 V~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~ 110 (346)
|+|||..+++++|+++|++||.|..+.+. +++|||+|.+ ++|..|+..+++..+.|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999887 3799999999 99999999999999999998873
No 72
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.13 E-value=3.9e-10 Score=80.66 Aligned_cols=66 Identities=35% Similarity=0.724 Sum_probs=61.9
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 46 ~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
+|+|+|||..+++++|+++|+.+|.|..+.+. +++|||+|.+ ++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999888 4899999999 999999999999999999998864
No 73
>KOG0105|consensus
Probab=99.10 E-value=1.5e-09 Score=89.65 Aligned_cols=111 Identities=16% Similarity=0.242 Sum_probs=94.0
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC-------------------------CCCCCcEEEEcCCCCC
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-------------------------PNTPTTKVFVGNLSDN 55 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~-------------------------~~~~~~~lfV~nLp~~ 55 (346)
+|||+|++..+|+.||..-+|..+.|+.|.|+.+..-.. ......+|.|.+||++
T Consensus 47 fafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~S 126 (241)
T KOG0105|consen 47 FAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPS 126 (241)
T ss_pred eeEEEecCccchhhhhhcccccccCcceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCC
Confidence 589999999999999999999999999999998774321 1133568999999999
Q ss_pred CCHHHHHHhhcCCCCeEEEEEE-CCEEEEEecC-HHHHHHHHHhCCcEEC--CEEEEEEE
Q psy16419 56 TRAPEVRELFVPYGTVVECDIV-RNYGFVHIDS-PDINKCIKELNGMMVD--GKPMKVVV 111 (346)
Q Consensus 56 ~~e~~L~~~F~~~G~v~~~~i~-~g~afV~f~~-~~a~~Ai~~l~g~~~~--g~~l~v~~ 111 (346)
.+++||+++..+.|.|....+. -|++.|+|.. |+.+-|+..|+...+. |....+..
T Consensus 127 gSWQDLKDHmReaGdvCfadv~rDg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 127 GSWQDLKDHMREAGDVCFADVQRDGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred CchHHHHHHHHhhCCeeeeeeecccceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 9999999999999999888887 5899999999 9999999999887663 54444443
No 74
>KOG0126|consensus
Probab=99.09 E-value=2.6e-11 Score=99.69 Aligned_cols=96 Identities=17% Similarity=0.357 Sum_probs=77.6
Q ss_pred HHHHhCCCeeC-CeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEe
Q psy16419 15 AIKELNGQIVN-EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHI 85 (346)
Q Consensus 15 Al~~lng~~l~-g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f 85 (346)
-+..||..++. |-.-.+.|... -..+.-|||||||+.+||.||...|++||+|+.|.++ +||||+.|
T Consensus 9 ~i~~lne~Elq~g~~~~~SWH~~----YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcY 84 (219)
T KOG0126|consen 9 NIQKLNERELQLGIADKKSWHQE----YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCY 84 (219)
T ss_pred HHHHhhHHhhccccccccchhhh----cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEe
Confidence 34556665543 22213333322 2457889999999999999999999999999999998 79999999
Q ss_pred cC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 86 DS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 86 ~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
++ .+..-|+..|||..|.||.|+|.....
T Consensus 85 EDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 85 EDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred cCccceEEEEeccCCceecceeEEeeeccc
Confidence 99 999999999999999999999987654
No 75
>KOG0106|consensus
Probab=99.08 E-value=1.1e-10 Score=100.68 Aligned_cols=111 Identities=23% Similarity=0.437 Sum_probs=97.7
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCC------C-------------CCCCCCcEEEEcCCCCCCCHHHH
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR------K-------------GPNTPTTKVFVGNLSDNTRAPEV 61 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~------~-------------~~~~~~~~lfV~nLp~~~~e~~L 61 (346)
+|||+|++..+|+.|+..+|+..|.|..+.|+++... . .+....+.+.|.+++..+.+++|
T Consensus 37 f~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl 116 (216)
T KOG0106|consen 37 FGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDL 116 (216)
T ss_pred cceeccCchhhhhcccchhcCceecceeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHH
Confidence 4799999999999999999999999988888887731 0 11234678999999999999999
Q ss_pred HHhhcCCCCeEEEEEECCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 62 RELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 62 ~~~F~~~G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
.+.|.++|.+....++++++||+|.+ ++|.+|+..|++..+.++.|.+..
T Consensus 117 ~d~~~~~g~~~~~~~~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 117 KDHFRPAGEVTYVDARRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred hhhhcccCCCchhhhhccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 99999999997777779999999999 999999999999999999999933
No 76
>KOG0108|consensus
Probab=99.04 E-value=3.7e-10 Score=107.70 Aligned_cols=70 Identities=26% Similarity=0.535 Sum_probs=68.2
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 45 ~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+.|||||+|++++|++|.++|+..|.|.+++++ +||||++|.+ ++|..|++.|||.++.|++|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 889999999999999999999999999999998 8999999999 999999999999999999999999876
No 77
>KOG1457|consensus
Probab=99.03 E-value=8.1e-10 Score=93.81 Aligned_cols=102 Identities=21% Similarity=0.339 Sum_probs=84.6
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeC---CeeeEEeecCCCCCC-------------------------------------
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVN---EKPLKIEAATSRKGP------------------------------------- 40 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~---g~~i~v~~~~~~~~~------------------------------------- 40 (346)
+|||.|.+..+|..|+.+|||..++ +..+.++.++.....
T Consensus 79 vaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~ 158 (284)
T KOG1457|consen 79 VAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLS 158 (284)
T ss_pred eEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhcccccc
Confidence 5899999999999999999999986 677888766521100
Q ss_pred ------------------------------------------------CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeE
Q psy16419 41 ------------------------------------------------NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVV 72 (346)
Q Consensus 41 ------------------------------------------------~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~ 72 (346)
.....+|||.||..+++|++|+.+|+.|-...
T Consensus 159 ~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~ 238 (284)
T KOG1457|consen 159 DPDELQEPGNADALKENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFH 238 (284)
T ss_pred CccccCCccccccCCCccccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCce
Confidence 01235899999999999999999999998877
Q ss_pred EEEEE-C---CEEEEEecC-HHHHHHHHHhCCcEE
Q psy16419 73 ECDIV-R---NYGFVHIDS-PDINKCIKELNGMMV 102 (346)
Q Consensus 73 ~~~i~-~---g~afV~f~~-~~a~~Ai~~l~g~~~ 102 (346)
..+|. | ..||++|++ +.|..|+..|.|..|
T Consensus 239 ~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 239 ILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred EEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 77777 3 489999999 999999999999866
No 78
>KOG4206|consensus
Probab=99.03 E-value=2.2e-09 Score=91.78 Aligned_cols=112 Identities=20% Similarity=0.348 Sum_probs=97.7
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC------------------------------------------
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG------------------------------------------ 39 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~------------------------------------------ 39 (346)
|||.|.+.+.|..|++.|+|..+.|+++.+.++..+..
T Consensus 55 A~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~ 134 (221)
T KOG4206|consen 55 AFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNL 134 (221)
T ss_pred eEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccC
Confidence 89999999999999999999999999999999874321
Q ss_pred -------CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---CCEEEEEecC-HHHHHHHHHhCCcEEC-CEEE
Q psy16419 40 -------PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVD-GKPM 107 (346)
Q Consensus 40 -------~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~---~g~afV~f~~-~~a~~Ai~~l~g~~~~-g~~l 107 (346)
...+...||+.|||.+++.+.|..+|.+|....+++++ ++.|||+|.+ ..|..|...+.+..|- ...+
T Consensus 135 p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m 214 (221)
T KOG4206|consen 135 PPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTM 214 (221)
T ss_pred CCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceE
Confidence 02345679999999999999999999999999999888 7999999999 8889999999998886 6777
Q ss_pred EEEEee
Q psy16419 108 KVVVAG 113 (346)
Q Consensus 108 ~v~~a~ 113 (346)
.|.+++
T Consensus 215 ~i~~a~ 220 (221)
T KOG4206|consen 215 QITFAK 220 (221)
T ss_pred EecccC
Confidence 777654
No 79
>KOG0132|consensus
Probab=98.93 E-value=1.7e-09 Score=106.32 Aligned_cols=72 Identities=21% Similarity=0.419 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
-++|||||.|+..++|.||.++|+.||.|.+|.++ |+||||.+.. .+|.+|+.+|+...+.++.|+|.|+..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 36899999999999999999999999999999888 9999999999 999999999999999999999999987
No 80
>KOG4211|consensus
Probab=98.92 E-value=1e-07 Score=89.92 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=87.6
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC--------CC--CCCcEEEEcCCCCCCCHHHHHHhhcCCCCe
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG--------PN--TPTTKVFVGNLSDNTRAPEVRELFVPYGTV 71 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~--------~~--~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v 71 (346)
|||+|.++|++++|++ .+-..+..+-|.|..+..... +. .....|-+.+||+.++++||.++|+..--|
T Consensus 52 A~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv 130 (510)
T KOG4211|consen 52 AYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIV 130 (510)
T ss_pred eEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCccc
Confidence 8999999999999998 677888889999987753321 11 245678899999999999999999987444
Q ss_pred EE-EEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 72 VE-CDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 72 ~~-~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.. +.+. .|-|||.|++ +.|++|+.. |...|+.+-|.|-.+..
T Consensus 131 ~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 131 PDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSSR 181 (510)
T ss_pred ccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhHH
Confidence 44 2222 4789999999 999999985 66778888888876543
No 81
>KOG0153|consensus
Probab=98.92 E-value=4.2e-09 Score=94.97 Aligned_cols=73 Identities=21% Similarity=0.449 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHh-CCcEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKEL-NGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l-~g~~~~g~~l~v~~a~~ 114 (346)
...++|||++|-..++|.+|+++|.+||+|.++.+. +++|||+|.+ ++|+.|..++ |...|+|++|.|.|..+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 557899999999999999999999999999999998 8999999999 9999988755 55678999999999887
No 82
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.91 E-value=2.1e-09 Score=88.54 Aligned_cols=42 Identities=36% Similarity=0.726 Sum_probs=38.7
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
..+++|||+|||+++||++|+++|++||+|++|+|+ |+||||
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV 81 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFV 81 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEE
Confidence 346789999999999999999999999999999997 579997
No 83
>smart00361 RRM_1 RNA recognition motif.
Probab=98.91 E-value=4.7e-09 Score=75.42 Aligned_cols=52 Identities=25% Similarity=0.478 Sum_probs=47.1
Q ss_pred HHHHHHhhc----CCCCeEEEE-EE----------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEE
Q psy16419 58 APEVRELFV----PYGTVVECD-IV----------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109 (346)
Q Consensus 58 e~~L~~~F~----~~G~v~~~~-i~----------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v 109 (346)
+++|+++|+ +||.|.++. +. +|||||+|.+ ++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999985 32 7899999999 9999999999999999999986
No 84
>KOG1190|consensus
Probab=98.87 E-value=1.7e-08 Score=92.77 Aligned_cols=113 Identities=14% Similarity=0.293 Sum_probs=96.9
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC---------CC-------------------------CCCCcEE
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK---------GP-------------------------NTPTTKV 47 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~---------~~-------------------------~~~~~~l 47 (346)
|.|+|.|...|+.|++.|+|..|+|++|+|..++... ++ -.++.+|
T Consensus 338 ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~Ppsatl 417 (492)
T KOG1190|consen 338 ALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATL 417 (492)
T ss_pred eeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhhe
Confidence 7899999999999999999999999999998876321 00 0356689
Q ss_pred EEcCCCCCCCHHHHHHhhcCCCCeEEEEEE----CCEEEEEecC-HHHHHHHHHhCCcEECCE-EEEEEEeec
Q psy16419 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV----RNYGFVHIDS-PDINKCIKELNGMMVDGK-PMKVVVAGF 114 (346)
Q Consensus 48 fV~nLp~~~~e~~L~~~F~~~G~v~~~~i~----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~-~l~v~~a~~ 114 (346)
...|+|.+++|++|+++|..-|..++.... +.++.+.+++ |+|..|+..++.+.+++. .|+|.+++.
T Consensus 418 Hlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 418 HLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred eeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 999999999999999999999887665444 6899999999 999999999999998765 899998875
No 85
>KOG0116|consensus
Probab=98.82 E-value=2.9e-08 Score=94.40 Aligned_cols=74 Identities=22% Similarity=0.406 Sum_probs=65.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
...+|||.|||.++++.+|+++|..||.|+...|. ..||||+|.+ ++++.||.+ +-..+++++|.|+..+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 34569999999999999999999999999988877 2799999999 999999986 5788999999999987
Q ss_pred ccCC
Q psy16419 114 FISS 117 (346)
Q Consensus 114 ~~~~ 117 (346)
+..+
T Consensus 366 ~~~~ 369 (419)
T KOG0116|consen 366 PGFR 369 (419)
T ss_pred cccc
Confidence 7433
No 86
>KOG4661|consensus
Probab=98.77 E-value=1.2e-08 Score=97.21 Aligned_cols=73 Identities=36% Similarity=0.630 Sum_probs=68.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.-+.+|||.+|+..+...+|+++|++||+|+-.+++ +.||||++.+ ++|.+||..|+.++|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 446789999999999999999999999999988887 7899999999 9999999999999999999999998
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 75
No 87
>KOG0125|consensus
Probab=98.75 E-value=1.2e-08 Score=91.43 Aligned_cols=41 Identities=29% Similarity=0.633 Sum_probs=38.9
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe------cceeeC
Q psy16419 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFV 346 (346)
Q Consensus 306 ~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~------k~fgFV 346 (346)
..++|+|.|||+..-|.||+..|.+||+|.+|+|| ||||||
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFV 141 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFV 141 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceE
Confidence 45789999999999999999999999999999998 899998
No 88
>KOG0415|consensus
Probab=98.73 E-value=1.6e-08 Score=91.31 Aligned_cols=75 Identities=19% Similarity=0.519 Sum_probs=69.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
++...|||-.|.+-+++++|+-+|+.||+|.+|.++ -.||||+|++ +++++|.-.|++..|+.+.|.|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 567899999999999999999999999999999998 2699999999 9999999999999999999999998
Q ss_pred eccC
Q psy16419 113 GFIS 116 (346)
Q Consensus 113 ~~~~ 116 (346)
.+.+
T Consensus 317 QSVs 320 (479)
T KOG0415|consen 317 QSVS 320 (479)
T ss_pred hhhh
Confidence 7743
No 89
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.72 E-value=1.5e-08 Score=72.27 Aligned_cols=37 Identities=32% Similarity=0.814 Sum_probs=34.3
Q ss_pred EEEecCCCCCCHHHHHHHhhcccceEEEEEec-------ceeeC
Q psy16419 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVK-------NYGFV 346 (346)
Q Consensus 310 lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k-------~fgFV 346 (346)
|||+|||+++|+++|+++|++||.|..+.+.+ +||||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V 44 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFV 44 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEE
Confidence 79999999999999999999999999999974 58886
No 90
>KOG4454|consensus
Probab=98.60 E-value=8.3e-09 Score=87.50 Aligned_cols=70 Identities=16% Similarity=0.253 Sum_probs=63.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
...+|||+|+...++|+-|.++|-+.|+|..|.|. ..||||.|.+ -...-|++.|||..+.+.++.+.+-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 46789999999999999999999999999999998 3499999999 9999999999999999988887653
No 91
>KOG1548|consensus
Probab=98.56 E-value=8.6e-07 Score=80.25 Aligned_cols=113 Identities=18% Similarity=0.235 Sum_probs=93.0
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC-------------------------------------CCCCCC
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------------------------------------GPNTPT 44 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~-------------------------------------~~~~~~ 44 (346)
|.+.|-..|+++.|+..|++..|.|+.|.|+.+.-.. ......
T Consensus 186 aLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~ 265 (382)
T KOG1548|consen 186 ALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARAD 265 (382)
T ss_pred eEEEeecccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCC
Confidence 6789999999999999999999999999998876110 011346
Q ss_pred cEEEEcCCC----CCCC-------HHHHHHhhcCCCCeEEEEEE----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEE
Q psy16419 45 TKVFVGNLS----DNTR-------APEVRELFVPYGTVVECDIV----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMK 108 (346)
Q Consensus 45 ~~lfV~nLp----~~~~-------e~~L~~~F~~~G~v~~~~i~----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~ 108 (346)
++|.+.|+= ...+ +++|.+-.++||.|.+|.+. .|.+-|.|.+ ++|..||..|+|..++||.|.
T Consensus 266 ~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~ 345 (382)
T KOG1548|consen 266 RTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLT 345 (382)
T ss_pred cEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEE
Confidence 788888882 1333 34667778999999999887 7999999999 999999999999999999999
Q ss_pred EEEeec
Q psy16419 109 VVVAGF 114 (346)
Q Consensus 109 v~~a~~ 114 (346)
......
T Consensus 346 A~i~DG 351 (382)
T KOG1548|consen 346 ASIWDG 351 (382)
T ss_pred EEEeCC
Confidence 887655
No 92
>KOG0151|consensus
Probab=98.56 E-value=1.1e-07 Score=92.88 Aligned_cols=73 Identities=30% Similarity=0.470 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-----------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-----------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v 109 (346)
...++|||+||++.++++.|...|..||+|..++|+ +.||||.|.+ .+|++|++.|+|..+.++.+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 557899999999999999999999999999999999 5799999999 9999999999999999999999
Q ss_pred EEeec
Q psy16419 110 VVAGF 114 (346)
Q Consensus 110 ~~a~~ 114 (346)
.|+++
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 99865
No 93
>KOG0129|consensus
Probab=98.52 E-value=6.6e-07 Score=85.02 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=49.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-----------CC---EEEEEecCHHHHHHHHHhCCcEECCEEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----------RN---YGFVHIDSPDINKCIKELNGMMVDGKPM 107 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-----------~g---~afV~f~~~~a~~Ai~~l~g~~~~g~~l 107 (346)
.-+++||||+||++++|++|...|..||.+.- ... +| |+|+.|++|....++ |+....+...+
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~L--l~aC~~~~~~~ 333 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSL--LSACSEGEGNY 333 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHH--HHHHhhcccce
Confidence 44789999999999999999999999998642 111 67 999999994444433 22333355555
Q ss_pred EEEEeec
Q psy16419 108 KVVVAGF 114 (346)
Q Consensus 108 ~v~~a~~ 114 (346)
.++...+
T Consensus 334 yf~vss~ 340 (520)
T KOG0129|consen 334 YFKVSSP 340 (520)
T ss_pred EEEEecC
Confidence 5555444
No 94
>KOG4211|consensus
Probab=98.49 E-value=9.9e-07 Score=83.36 Aligned_cols=69 Identities=20% Similarity=0.298 Sum_probs=57.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
..-|-+.+||+++|++||.++|+.++ |..+.+. .|-|||+|.+ +++++|++ .+...+..+-|.|-.+..
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 45567799999999999999999984 7776666 5899999999 99999998 477788888888866554
No 95
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.45 E-value=2.4e-07 Score=66.21 Aligned_cols=37 Identities=32% Similarity=0.752 Sum_probs=31.9
Q ss_pred EEEecCCCCCCHHHHHHHhhcccceEEEEEec-------ceeeC
Q psy16419 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVK-------NYGFV 346 (346)
Q Consensus 310 lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k-------~fgFV 346 (346)
|||+|||+++|+++|+++|+.||.|..+.+.+ ++|||
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v 44 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFV 44 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEE
Confidence 79999999999999999999999999999973 57775
No 96
>KOG0113|consensus
Probab=98.45 E-value=2.2e-07 Score=82.40 Aligned_cols=50 Identities=32% Similarity=0.481 Sum_probs=42.9
Q ss_pred cCCCCCCCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 297 RNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 297 ~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
...+.....|=++|||+-|+++++|.+|+..|+.||+|+.+.|| ||||||
T Consensus 91 ~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFI 148 (335)
T KOG0113|consen 91 NNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFI 148 (335)
T ss_pred CCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEE
Confidence 33344444667899999999999999999999999999999998 579997
No 97
>KOG4209|consensus
Probab=98.40 E-value=1.4e-06 Score=77.14 Aligned_cols=73 Identities=18% Similarity=0.335 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.+...+||+|+.+.++.++++.+|+.||.|..+.|. |||+||+|.+ +.+..|+. ||+..|.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 567899999999999999999999999999888777 7899999999 99999999 9999999999999988
Q ss_pred ecc
Q psy16419 113 GFI 115 (346)
Q Consensus 113 ~~~ 115 (346)
+..
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 773
No 98
>KOG0533|consensus
Probab=98.40 E-value=8.7e-07 Score=78.27 Aligned_cols=73 Identities=29% Similarity=0.490 Sum_probs=67.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
...++|+|.|||+.++++||+++|..||.+..+.+. .|.|-|.|.. ++|.+|++.++|..++|+++++....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 345889999999999999999999999998888887 5899999999 99999999999999999999999877
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 6
No 99
>KOG4208|consensus
Probab=98.39 E-value=8.1e-07 Score=75.08 Aligned_cols=73 Identities=18% Similarity=0.293 Sum_probs=66.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCC-CCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPY-GTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~-G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
....-+||..+|..+.+.++..+|.+| |.|..+++- ||||||+|++ +.|..|.+.||+..+.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 446678999999999999999999999 667777774 7999999999 999999999999999999999998
Q ss_pred eec
Q psy16419 112 AGF 114 (346)
Q Consensus 112 a~~ 114 (346)
-.+
T Consensus 127 mpp 129 (214)
T KOG4208|consen 127 MPP 129 (214)
T ss_pred eCc
Confidence 777
No 100
>KOG0114|consensus
Probab=98.39 E-value=5.4e-07 Score=67.74 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=38.6
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe-----cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~-----k~fgFV 346 (346)
++.-+.-|||+|||+++|.|+.-+||.+||.|..++|= ||=|||
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFV 62 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFV 62 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEE
Confidence 44456789999999999999999999999999999993 677776
No 101
>KOG0120|consensus
Probab=98.38 E-value=3.4e-07 Score=88.28 Aligned_cols=113 Identities=25% Similarity=0.376 Sum_probs=97.6
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC----------------------CCCCCcEEEEcCCCCCCCH
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG----------------------PNTPTTKVFVGNLSDNTRA 58 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~----------------------~~~~~~~lfV~nLp~~~~e 58 (346)
.||++|.+.++|..|+. +++..+.|.++.+........ ......++||++||..+++
T Consensus 225 fa~ie~~s~~~at~~~~-~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~ 303 (500)
T KOG0120|consen 225 FAFIEFRSISEATEAMA-LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTE 303 (500)
T ss_pred ceeEEecCCCchhhhhc-ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCH
Confidence 48999999999999987 899999998888765442211 0133568999999999999
Q ss_pred HHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 59 PEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 59 ~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.++.++...||.+....+. +||||.+|.+ .....|+..|||+.++++.|.|..+..
T Consensus 304 ~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 304 DQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred HHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 9999999999999887766 8999999999 999999999999999999999999887
No 102
>KOG0226|consensus
Probab=98.38 E-value=3.3e-07 Score=79.61 Aligned_cols=113 Identities=19% Similarity=0.440 Sum_probs=88.8
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCC-----CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEE
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN-----TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI 76 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~-----~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i 76 (346)
||+.|.....-.++-.+-+++.+.-.+++........++. ....+||.|.|..+++++.|-..|.+|-.....++
T Consensus 143 ~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akv 222 (290)
T KOG0226|consen 143 AFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKV 222 (290)
T ss_pred cccCcchhhhhhhhccccccccccCcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccc
Confidence 5666666666666655556666666666666655554432 56789999999999999999999999976655555
Q ss_pred E--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 77 V--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 77 ~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+ +||+||.|.+ .++..|+.+|||+.++.++|+++.+.-
T Consensus 223 iRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 223 IRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred cccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 4 7999999999 999999999999999999998876554
No 103
>KOG0128|consensus
Probab=98.32 E-value=5.1e-08 Score=97.24 Aligned_cols=96 Identities=19% Similarity=0.267 Sum_probs=75.7
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCC---------CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeE
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN---------TPTTKVFVGNLSDNTRAPEVRELFVPYGTVV 72 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~---------~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~ 72 (346)
+++++....+++.|.. ..+..+.++.+.|..+.++.... ....++||+||+..+.+++|...|..+|.+.
T Consensus 617 ~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e 695 (881)
T KOG0128|consen 617 QQKVQSKHGSAESATV-PAGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIE 695 (881)
T ss_pred hhhhhccccchhhccc-ccccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhh
Confidence 3566777777888766 67888888888887766554221 2246799999999999999999999999887
Q ss_pred EEEEE--------CCEEEEEecC-HHHHHHHHHhC
Q psy16419 73 ECDIV--------RNYGFVHIDS-PDINKCIKELN 98 (346)
Q Consensus 73 ~~~i~--------~g~afV~f~~-~~a~~Ai~~l~ 98 (346)
.+++. ||+||++|.. +++.+|+...+
T Consensus 696 ~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d 730 (881)
T KOG0128|consen 696 VVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD 730 (881)
T ss_pred hHHHHHHhhccccccceeeEeecCCchhhhhhhhh
Confidence 76654 8999999999 99999998533
No 104
>KOG4660|consensus
Probab=98.30 E-value=4e-07 Score=87.21 Aligned_cols=67 Identities=25% Similarity=0.355 Sum_probs=62.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---CCEEEEEecC-HHHHHHHHHhCCcEECCEEEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMK 108 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~---~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~ 108 (346)
.+..+|+|-|||..+++++|+.+|+.||+|..|+.- ++..||+|.+ .+|++|+++|++.++.|+.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 557899999999999999999999999999997665 8999999999 999999999999999999888
No 105
>KOG0126|consensus
Probab=98.26 E-value=1.9e-07 Score=77.18 Aligned_cols=40 Identities=25% Similarity=0.548 Sum_probs=36.4
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
..-|||||||++.||.||-.+||+||+|++|.++ |||+|.
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFL 82 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFL 82 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEE
Confidence 4569999999999999999999999999999998 468884
No 106
>KOG0121|consensus
Probab=98.18 E-value=1.2e-06 Score=68.48 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=31.3
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEE
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDV 339 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i 339 (346)
+++|||+||++.+|||+|-+||+++|+|..|.+
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiM 68 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIM 68 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEe
Confidence 679999999999999999999999999999866
No 107
>smart00362 RRM_2 RNA recognition motif.
Probab=98.13 E-value=3.4e-06 Score=59.44 Aligned_cols=38 Identities=32% Similarity=0.741 Sum_probs=34.6
Q ss_pred eEEEecCCCCCCHHHHHHHhhcccceEEEEEec------ceeeC
Q psy16419 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK------NYGFV 346 (346)
Q Consensus 309 ~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k------~fgFV 346 (346)
+|||+|||..+++++|+++|++||+|..+.+.+ ++|||
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v 44 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFV 44 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEE
Confidence 589999999999999999999999999999873 67775
No 108
>KOG0120|consensus
Probab=98.12 E-value=9.9e-06 Score=78.33 Aligned_cols=114 Identities=20% Similarity=0.269 Sum_probs=85.7
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCC-----------------------CCCcEEEEcCC--CCC
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN-----------------------TPTTKVFVGNL--SDN 55 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~-----------------------~~~~~lfV~nL--p~~ 55 (346)
.||.+|.+.-....|++.|||+.+.++.+.|+.+....... .+...|...|+ |.+
T Consensus 333 ~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~de 412 (500)
T KOG0120|consen 333 FAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDE 412 (500)
T ss_pred eeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHH
Confidence 37999999999999999999999999999998765332110 11122222232 111
Q ss_pred -CCH-------HHHHHhhcCCCCeEEEEEE-----------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 56 -TRA-------PEVRELFVPYGTVVECDIV-----------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 56 -~~e-------~~L~~~F~~~G~v~~~~i~-----------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.++ ++++..+++||.|..|.|. -|.-||+|.+ +++++|.++|+|.++.++.+...+...
T Consensus 413 Lkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 413 LKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred hcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 122 2345567799999999998 3677999999 999999999999999999999988765
No 109
>KOG1548|consensus
Probab=98.10 E-value=8.2e-06 Score=74.02 Aligned_cols=72 Identities=21% Similarity=0.302 Sum_probs=65.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEE--------EEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEE
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVE--------CDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKP 106 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~--------~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~ 106 (346)
.++.|||+|||.++|-+++.++|++||-|.+ |++- +|=|.+.|.. ++..-|+..|++..+.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 3678999999999999999999999998854 3333 7999999999 9999999999999999999
Q ss_pred EEEEEeec
Q psy16419 107 MKVVVAGF 114 (346)
Q Consensus 107 l~v~~a~~ 114 (346)
|+|+.|+-
T Consensus 213 ~rVerAkf 220 (382)
T KOG1548|consen 213 LRVERAKF 220 (382)
T ss_pred EEEehhhh
Confidence 99999987
No 110
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.10 E-value=3.1e-06 Score=76.12 Aligned_cols=40 Identities=33% Similarity=0.646 Sum_probs=37.3
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
..+|||+|||+++|+++|+++|++||.|..+.|. ||||||
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v 162 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFV 162 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEE
Confidence 5899999999999999999999999999999986 579987
No 111
>KOG0112|consensus
Probab=98.07 E-value=1.8e-06 Score=86.88 Aligned_cols=62 Identities=29% Similarity=0.420 Sum_probs=54.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEEC
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVD 103 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~ 103 (346)
..+.+||+|||+..+++.+|+..|..+|.|.+|.|. .-|+||.|.+ ..+..|...+.+..|.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~ 439 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIG 439 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccc
Confidence 457899999999999999999999999999999998 3599999999 8888888888776653
No 112
>KOG0122|consensus
Probab=98.06 E-value=3.9e-06 Score=72.66 Aligned_cols=41 Identities=17% Similarity=0.396 Sum_probs=38.5
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 306 ~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
+..+|=|-||+.+++|.+|++||.+||.|.+|.|. ||||||
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFV 236 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFV 236 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEE
Confidence 56789999999999999999999999999999997 679998
No 113
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.02 E-value=1.4e-05 Score=54.47 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=32.0
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeec
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAA 34 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~ 34 (346)
.|||+|.+.++|++|++.|||..+.|++|.|.++
T Consensus 23 ~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 23 FAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp EEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3899999999999999999999999999999875
No 114
>KOG0132|consensus
Probab=97.96 E-value=3e-05 Score=77.18 Aligned_cols=40 Identities=15% Similarity=0.494 Sum_probs=37.9
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--cceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--k~fgFV 346 (346)
+++||||.|+.+++|+||+.+|+.||+|++|.++ |++|||
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI 462 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFI 462 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEE
Confidence 6789999999999999999999999999999998 789986
No 115
>KOG4210|consensus
Probab=97.95 E-value=1.6e-05 Score=72.75 Aligned_cols=111 Identities=16% Similarity=0.331 Sum_probs=86.8
Q ss_pred eEEEecCHHHHHHHHHHhCCC-eeCCeeeEEeecCCCC---------CCCCCCcEEE-EcCCCCCCCHHHHHHhhcCCCC
Q psy16419 2 SSGHMENDEEGRTAIKELNGQ-IVNEKPLKIEAATSRK---------GPNTPTTKVF-VGNLSDNTRAPEVRELFVPYGT 70 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~-~l~g~~i~v~~~~~~~---------~~~~~~~~lf-V~nLp~~~~e~~L~~~F~~~G~ 70 (346)
++|.|+..+.+..|+. +.+. .+.+..+......... .......++| |++|+..+++++|+.+|..+|.
T Consensus 133 ~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~ 211 (285)
T KOG4210|consen 133 LSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGE 211 (285)
T ss_pred eeeccccHHHHHHHHH-hhhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCc
Confidence 5789999999999998 5553 4444443333222211 1113344555 9999999999999999999999
Q ss_pred eEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 71 VVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 71 v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
|..+++. ++||+|.|.. ..+..++.. +...+.++++.+....+
T Consensus 212 i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 212 ITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 9999888 7999999999 999999886 78899999999999887
No 116
>KOG4676|consensus
Probab=97.91 E-value=1.2e-05 Score=73.90 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=57.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-----------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 45 ~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-----------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
..|-|.||.+.++.++++.+|.-.|+|.++.++ ...|||.|.+ ..+..|.. |..+.+-++.|.|..+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 378899999999999999999999999998887 5799999999 77666665 7777777777776654
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
-.
T Consensus 87 ~~ 88 (479)
T KOG4676|consen 87 GD 88 (479)
T ss_pred CC
Confidence 33
No 117
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.88 E-value=3.1e-05 Score=56.21 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=47.5
Q ss_pred cEEEEcCCCCCCCHHH----HHHhhcCCC-CeEEEEEECCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 45 TKVFVGNLSDNTRAPE----VRELFVPYG-TVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 45 ~~lfV~nLp~~~~e~~----L~~~F~~~G-~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+.|+|.|||.+.+... |+.++..+| +|.+| ..+.|+|.|.+ +.|.+|.+.|+|..+.|++|.|.+...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 5799999999888765 556666775 56555 58999999999 999999999999999999999998754
No 118
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.85 E-value=2.2e-05 Score=55.46 Aligned_cols=33 Identities=39% Similarity=0.789 Sum_probs=31.1
Q ss_pred eEEEecCCCCCCHHHHHHHhhcccceEEEEEec
Q psy16419 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 341 (346)
Q Consensus 309 ~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k 341 (346)
+|+|+|||..+++++|+++|+.||.|..+.+.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~ 33 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVR 33 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEee
Confidence 489999999999999999999999999999974
No 119
>KOG4210|consensus
Probab=97.85 E-value=1.2e-05 Score=73.59 Aligned_cols=67 Identities=21% Similarity=0.278 Sum_probs=52.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEE
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v 109 (346)
..+++|++++...+.+.++..++..+|.+..+... ++++.+.|.. +.+..|+.......+.++.+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~ 162 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEK 162 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccC
Confidence 47889999999999999999999999977665444 8999999999 9999998854334555544443
No 120
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.83 E-value=9e-05 Score=56.26 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=58.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCC--CCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEEC----CEEEEE
Q psy16419 45 TKVFVGNLSDNTRAPEVRELFVPY--GTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVD----GKPMKV 109 (346)
Q Consensus 45 ~~lfV~nLp~~~~e~~L~~~F~~~--G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~----g~~l~v 109 (346)
+||-|.|||...+.++|.+++... |...-+.++ .|||||.|.+ +.|.+-.+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 789999999999999998888643 444444444 6999999999 9999999999999885 467888
Q ss_pred EEeec
Q psy16419 110 VVAGF 114 (346)
Q Consensus 110 ~~a~~ 114 (346)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88876
No 121
>KOG0112|consensus
Probab=97.83 E-value=4.1e-05 Score=77.36 Aligned_cols=110 Identities=19% Similarity=0.341 Sum_probs=93.7
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CC
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RN 79 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g 79 (346)
|||.|.+.+.+-.|..++.+..|..-.+.+.....+ ....+.+|+++|+.++....|...|..||.|..|.+. .-
T Consensus 416 ~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~k---st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~ 492 (975)
T KOG0112|consen 416 AFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPK---STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP 492 (975)
T ss_pred hhhhhhccccCcccchhhcCCccccCcccccccccc---cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc
Confidence 689999999999998889888876545555544332 2568899999999999999999999999999999888 56
Q ss_pred EEEEEecC-HHHHHHHHHhCCcEECC--EEEEEEEeec
Q psy16419 80 YGFVHIDS-PDINKCIKELNGMMVDG--KPMKVVVAGF 114 (346)
Q Consensus 80 ~afV~f~~-~~a~~Ai~~l~g~~~~g--~~l~v~~a~~ 114 (346)
|++|.|++ ..++.|+..|-|..|++ +.++|.++..
T Consensus 493 yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 493 YAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred ceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 99999999 99999999999999976 6788888877
No 122
>KOG0415|consensus
Probab=97.80 E-value=1.5e-05 Score=72.47 Aligned_cols=42 Identities=31% Similarity=0.737 Sum_probs=38.8
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEecc--------eeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k~--------fgFV 346 (346)
+|...|||.-|.+-+|.|||.-+||.||+|++|.|||+ |+||
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFi 286 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFI 286 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeee
Confidence 45678999999999999999999999999999999986 8886
No 123
>smart00360 RRM RNA recognition motif.
Probab=97.76 E-value=2.3e-05 Score=54.84 Aligned_cols=35 Identities=37% Similarity=0.802 Sum_probs=31.7
Q ss_pred EecCCCCCCHHHHHHHhhcccceEEEEEec--------ceeeC
Q psy16419 312 IGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFV 346 (346)
Q Consensus 312 V~nLp~~~tee~L~~~F~~~G~I~~v~i~k--------~fgFV 346 (346)
|+|||..+++++|+++|++||.|..+.|.+ +||||
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v 43 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFV 43 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEE
Confidence 689999999999999999999999999974 48876
No 124
>KOG4661|consensus
Probab=97.71 E-value=6.7e-05 Score=72.22 Aligned_cols=40 Identities=38% Similarity=0.693 Sum_probs=37.7
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
+.+|||.+|...+...||+.||++||+|+-++|+ |+||||
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfV 452 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFV 452 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEE
Confidence 5689999999999999999999999999999998 679998
No 125
>KOG0153|consensus
Probab=97.70 E-value=4.6e-05 Score=69.28 Aligned_cols=40 Identities=28% Similarity=0.494 Sum_probs=37.3
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--cceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--k~fgFV 346 (346)
.++|||++|...++|.+|+++|-+||+|.++.|+ +++|||
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv 269 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFV 269 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccccccee
Confidence 5789999999999999999999999999999997 678887
No 126
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.69 E-value=8e-05 Score=57.70 Aligned_cols=68 Identities=22% Similarity=0.438 Sum_probs=44.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEECC--EEEEEecC-HHHHHHHHHhCC-----cEECCEEEEEEEe
Q psy16419 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--YGFVHIDS-PDINKCIKELNG-----MMVDGKPMKVVVA 112 (346)
Q Consensus 45 ~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~~g--~afV~f~~-~~a~~Ai~~l~g-----~~~~g~~l~v~~a 112 (346)
+-|.|.+++..++.++|++.|+.||.|..|.+.+| -|+|.|.+ +.|+.|+..+.- ..+.+..+.++.-
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 56889899999999999999999999999999954 89999999 999999986643 3556666665553
No 127
>smart00361 RRM_1 RNA recognition motif.
Probab=97.51 E-value=0.00018 Score=51.45 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=28.9
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEE
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKI 31 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v 31 (346)
|||+|.+.++|++|++.|||..+.|+.|.+
T Consensus 40 ~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 40 VYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred EEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 899999999999999999999999999876
No 128
>KOG1365|consensus
Probab=97.51 E-value=4.4e-05 Score=70.16 Aligned_cols=112 Identities=10% Similarity=0.217 Sum_probs=79.4
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCC----------------------------CC--CCCCCCcEEEEcC
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATS----------------------------RK--GPNTPTTKVFVGN 51 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~----------------------------~~--~~~~~~~~lfV~n 51 (346)
|||.|+++++|+.|+.+ |...|.-+.|.+.++.. .. .+......|-+.+
T Consensus 209 AFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRG 287 (508)
T KOG1365|consen 209 AFVLFACEEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRG 287 (508)
T ss_pred eEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecC
Confidence 89999999999999985 43333334444422220 00 1113356788999
Q ss_pred CCCCCCHHHHHHhhcCCCC-eEE--EEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 52 LSDNTRAPEVRELFVPYGT-VVE--CDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 52 Lp~~~~e~~L~~~F~~~G~-v~~--~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
||++.+.++|.++|..|-. |.- |.+. .|-|||+|.+ +.|..|....+.+....|-|.|-.+..
T Consensus 288 LPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 288 LPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred CChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 9999999999999998854 222 3443 5899999999 999999888777777788888766543
No 129
>KOG0116|consensus
Probab=97.48 E-value=7.9e-05 Score=71.21 Aligned_cols=39 Identities=26% Similarity=0.619 Sum_probs=35.4
Q ss_pred ceEEEecCCCCCCHHHHHHHhhcccceEEEEEec--------ceeeC
Q psy16419 308 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFV 346 (346)
Q Consensus 308 ~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k--------~fgFV 346 (346)
..|||+|||.++|+.+|++.|++||.|+...|-. +||||
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV 335 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFV 335 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEE
Confidence 4599999999999999999999999999998852 69997
No 130
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.45 E-value=0.00026 Score=64.16 Aligned_cols=71 Identities=21% Similarity=0.448 Sum_probs=59.8
Q ss_pred CcEEEEcCCCCCCCHHH----H--HHhhcCCCCeEEEEEEC---------C-E-EEEEecC-HHHHHHHHHhCCcEECCE
Q psy16419 44 TTKVFVGNLSDNTRAPE----V--RELFVPYGTVVECDIVR---------N-Y-GFVHIDS-PDINKCIKELNGMMVDGK 105 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~----L--~~~F~~~G~v~~~~i~~---------g-~-afV~f~~-~~a~~Ai~~l~g~~~~g~ 105 (346)
..-+||-+|++.+-.++ | .++|.+||+|..|.+.| + + .||+|.+ ++|.+||.+.+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 34589999988777666 2 58899999999998872 2 2 3999999 999999999999999999
Q ss_pred EEEEEEeec
Q psy16419 106 PMKVVVAGF 114 (346)
Q Consensus 106 ~l~v~~a~~ 114 (346)
.|+..+...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999988654
No 131
>KOG0115|consensus
Probab=97.45 E-value=0.0015 Score=57.30 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=70.9
Q ss_pred HHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEE
Q psy16419 10 EEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGF 82 (346)
Q Consensus 10 e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~af 82 (346)
.-|+.|-.+|+++...|+.+.|.++.. ..|||.||+..++-+.|..-|+.||+|....+. .+-++
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~--------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~ 76 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH--------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGI 76 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc--------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccch
Confidence 346777788999999999999999875 469999999999999999999999999876555 46789
Q ss_pred EEecC-HHHHHHHHHhCCc
Q psy16419 83 VHIDS-PDINKCIKELNGM 100 (346)
Q Consensus 83 V~f~~-~~a~~Ai~~l~g~ 100 (346)
|+|.. -.|.+|+...+..
T Consensus 77 v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 77 VEFAKKPNARKAARRCREG 95 (275)
T ss_pred hhhhcchhHHHHHHHhccC
Confidence 99999 9999998876433
No 132
>KOG1365|consensus
Probab=97.41 E-value=0.00027 Score=65.16 Aligned_cols=102 Identities=17% Similarity=0.166 Sum_probs=74.4
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC---------------CCCCCcEEEEcCCCCCCCHHHHHHhhc
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG---------------PNTPTTKVFVGNLSDNTRAPEVRELFV 66 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~---------------~~~~~~~lfV~nLp~~~~e~~L~~~F~ 66 (346)
|.|.|.++|.-+.|++ -+.+.+.++.|.|-.+....- .+.+..-|-..+||+++++.|+.++|.
T Consensus 105 ~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~ 183 (508)
T KOG1365|consen 105 ALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFG 183 (508)
T ss_pred eEEEecCchhhhhhhH-hhhhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcC
Confidence 6799999999999988 677888889998877664321 112234566789999999999999996
Q ss_pred CC----CCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCE
Q psy16419 67 PY----GTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105 (346)
Q Consensus 67 ~~----G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~ 105 (346)
.- |..+.+-.+ .|-|||.|.. ++|+.|+.+ |...++-|
T Consensus 184 ~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqR 233 (508)
T KOG1365|consen 184 PPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQR 233 (508)
T ss_pred CCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHH
Confidence 32 233344333 4899999999 999999985 44444333
No 133
>KOG0107|consensus
Probab=97.38 E-value=0.00016 Score=59.81 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=35.7
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG 39 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~ 39 (346)
+|||||++..+|+.|+..|+|..|+|..|.|+.......
T Consensus 49 fAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 49 FAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred ceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 599999999999999999999999999999998876543
No 134
>KOG0130|consensus
Probab=97.36 E-value=0.00018 Score=56.92 Aligned_cols=44 Identities=30% Similarity=0.493 Sum_probs=38.5
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
.++.+..|||-++...+||++|.+.|..||+|..+.+. |||+.|
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLv 119 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALV 119 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeee
Confidence 34557899999999999999999999999999999883 777765
No 135
>KOG2193|consensus
Probab=97.32 E-value=8.1e-05 Score=69.30 Aligned_cols=70 Identities=24% Similarity=0.323 Sum_probs=56.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCC--CCeEEEEEECCEEEEEecC-HHHHHHHHHhCCc-EECCEEEEEEEeec
Q psy16419 45 TKVFVGNLSDNTRAPEVRELFVPY--GTVVECDIVRNYGFVHIDS-PDINKCIKELNGM-MVDGKPMKVVVAGF 114 (346)
Q Consensus 45 ~~lfV~nLp~~~~e~~L~~~F~~~--G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~g~-~~~g~~l~v~~a~~ 114 (346)
.++|++||.+.++..+|+.+|... +--....+..||+||.+.+ ..|.+|++.++|+ ++.|+++.+..+-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 469999999999999999999754 2222333337999999999 9999999999997 67788877766555
No 136
>KOG0151|consensus
Probab=97.30 E-value=0.00019 Score=71.00 Aligned_cols=43 Identities=26% Similarity=0.651 Sum_probs=39.2
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe-----------cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----------KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~-----------k~fgFV 346 (346)
++.+++|||+||++.++|+.|-..|..||+|.+|+|+ +++|||
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfv 224 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFV 224 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhcccccccee
Confidence 4457899999999999999999999999999999997 568887
No 137
>KOG2193|consensus
Probab=97.14 E-value=1.5e-05 Score=74.05 Aligned_cols=109 Identities=21% Similarity=0.300 Sum_probs=94.1
Q ss_pred eEEEecCHHHHHHHHHHhCC-CeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---
Q psy16419 2 SSGHMENDEEGRTAIKELNG-QIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 77 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng-~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--- 77 (346)
|||.+.+...|.+|++.++| ..+.|+++.+....+++.+ ++++-|.|+|+...++-|..+..+||.+..|...
T Consensus 40 afvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr---srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~ 116 (584)
T KOG2193|consen 40 AFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR---SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTD 116 (584)
T ss_pred eeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH---hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccc
Confidence 79999999999999999999 6789999999998877643 5679999999999999999999999999988654
Q ss_pred --CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 78 --RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 78 --~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
.-.--|+|.. +.+..||..++|..+....+++.+--
T Consensus 117 ~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 117 SETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 2233467888 89999999999999999988888743
No 138
>KOG0129|consensus
Probab=97.08 E-value=0.0049 Score=59.24 Aligned_cols=95 Identities=20% Similarity=0.258 Sum_probs=70.3
Q ss_pred eEEEecCHHHHHHHHHHhCC----Cee-------CCeeeEEeecCCCC--------CCCCCCcEEEEcCCCCCCCHHHHH
Q psy16419 2 SSGHMENDEEGRTAIKELNG----QIV-------NEKPLKIEAATSRK--------GPNTPTTKVFVGNLSDNTRAPEVR 62 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng----~~l-------~g~~i~v~~~~~~~--------~~~~~~~~lfV~nLp~~~~e~~L~ 62 (346)
+|+.|+++...+.-+.+... ..| ..+.+.|.+..... .+-.+.+|||||+||.-++.++|-
T Consensus 309 vflvFe~E~sV~~Ll~aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA 388 (520)
T KOG0129|consen 309 VFLVFEDERSVQSLLSACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELA 388 (520)
T ss_pred EEEEecchHHHHHHHHHHhhcccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHH
Confidence 58899999999887765432 111 12333333322111 123668999999999999999999
Q ss_pred Hhhc-CCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHH
Q psy16419 63 ELFV-PYGTVVECDIV--------RNYGFVHIDS-PDINKCIKE 96 (346)
Q Consensus 63 ~~F~-~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~ 96 (346)
.+|+ -||.|..+-|- +|-|=|+|.+ .+=.+||..
T Consensus 389 ~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 389 MIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred HHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 9998 89999988776 8999999999 888888863
No 139
>KOG0111|consensus
Probab=97.06 E-value=0.00047 Score=59.05 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=38.8
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCC
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT 44 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~ 44 (346)
+|||+|+..|+|..||+.||+.+|.|+.|+|..+.+.+-.....
T Consensus 54 FgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kikegsq 97 (298)
T KOG0111|consen 54 FGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIKEGSQ 97 (298)
T ss_pred eeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCccccCCCC
Confidence 58999999999999999999999999999999999876544333
No 140
>KOG0128|consensus
Probab=97.00 E-value=0.00025 Score=71.50 Aligned_cols=96 Identities=13% Similarity=0.071 Sum_probs=79.6
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 77 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--- 77 (346)
.|||+|..++++.+|+....... .| ...|+|.|+|+..|.++|+.+++.+|.+.+..++
T Consensus 711 ~~Y~~F~~~~~~~aaV~f~d~~~-~g-----------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r 772 (881)
T KOG0128|consen 711 KAYVEFLKPEHAGAAVAFRDSCF-FG-----------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR 772 (881)
T ss_pred ceeeEeecCCchhhhhhhhhhhh-hh-----------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh
Confidence 37899999999999988433333 33 3569999999999999999999999999998766
Q ss_pred ----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 78 ----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 78 ----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+|.++|.|.+ .++.+++..++...+.-+.+.|..+.+
T Consensus 773 ~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 773 AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 7999999999 999999988888877777777766555
No 141
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.92 E-value=0.0017 Score=43.55 Aligned_cols=49 Identities=24% Similarity=0.424 Sum_probs=40.9
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHH
Q psy16419 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCI 94 (346)
Q Consensus 45 ~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai 94 (346)
+.|-|.+.+.+..+ ++...|..||+|.++.+. ....+|.|.+ .+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 46778888877665 455588899999999998 7899999999 9999885
No 142
>KOG4207|consensus
Probab=96.87 E-value=0.00072 Score=57.45 Aligned_cols=36 Identities=11% Similarity=0.396 Sum_probs=33.9
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 36 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~ 36 (346)
+|||.|.+..+|++|+++|+|..|+|+.|.|+.+.-
T Consensus 57 FaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 57 FAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred eeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 699999999999999999999999999999988764
No 143
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.86 E-value=0.0058 Score=49.65 Aligned_cols=54 Identities=24% Similarity=0.422 Sum_probs=46.5
Q ss_pred HHHHhhcCCCCeEEEEEECCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 60 EVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 60 ~L~~~F~~~G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+|.+.|..||.+.-+++..+.-.|+|.+ +.|.+|+. |+|.+++|+.|+|+...+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGDTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETTCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCCeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 6778899999999888888999999999 99999998 899999999999998777
No 144
>KOG4307|consensus
Probab=96.80 E-value=0.0018 Score=64.04 Aligned_cols=110 Identities=12% Similarity=0.039 Sum_probs=85.7
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC--------------------------------------CCCCC
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK--------------------------------------GPNTP 43 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~--------------------------------------~~~~~ 43 (346)
++|+|....++++|+. -|...+-.+.+.+..+.... .+...
T Consensus 355 ~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~a 433 (944)
T KOG4307|consen 355 KTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGA 433 (944)
T ss_pred eEEEecCcchHHHHHh-cCchhhhhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCc
Confidence 7899999999999987 56666667777775543111 01134
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeEE-EEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVE-CDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~-~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
+..|||-.||..+++.++-++|...-.|++ |.|. ++-|||+|.. +++..|...-+.+.++.+.|+|.-.
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 678999999999999999999998888877 5544 6899999999 9988888766666777788888764
No 145
>KOG1855|consensus
Probab=96.64 E-value=0.0043 Score=58.29 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=52.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---------------------CCEEEEEecC-HHHHHHHHHhCC
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---------------------RNYGFVHIDS-PDINKCIKELNG 99 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~---------------------~g~afV~f~~-~~a~~Ai~~l~g 99 (346)
.++++|.+-|||.+-.-+.|.++|+.+|.|..|+|. +-+|+|+|+. +.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 578999999999999999999999999999999997 3489999999 999999997754
No 146
>KOG3152|consensus
Probab=96.57 E-value=0.0011 Score=58.21 Aligned_cols=64 Identities=23% Similarity=0.350 Sum_probs=56.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE------------C--------CEEEEEecC-HHHHHHHHHhCCcE
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------------R--------NYGFVHIDS-PDINKCIKELNGMM 101 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~------------~--------g~afV~f~~-~~a~~Ai~~l~g~~ 101 (346)
..-.||+++||+.++-.-|+++|+.||.|-+|.+. + --|.|+|.+ ..|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 45789999999999999999999999999999887 0 136899999 99999999999999
Q ss_pred ECCEE
Q psy16419 102 VDGKP 106 (346)
Q Consensus 102 ~~g~~ 106 (346)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98864
No 147
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.51 E-value=0.014 Score=44.62 Aligned_cols=69 Identities=22% Similarity=0.287 Sum_probs=50.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEE-------------EE--CCEEEEEecC-HHHHHHHHHhCCcEECCE-E
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECD-------------IV--RNYGFVHIDS-PDINKCIKELNGMMVDGK-P 106 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~-------------i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g~-~ 106 (346)
.+-|.|-+.|+. ....+.+.|++||.|.+.. +. ...-.|+|.+ .+|.+|+.+ ||..+.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 456888889888 4467788899999998875 33 6788999999 999999984 99999885 5
Q ss_pred EEEEEeec
Q psy16419 107 MKVVVAGF 114 (346)
Q Consensus 107 l~v~~a~~ 114 (346)
+-|.+.++
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 55777644
No 148
>KOG0226|consensus
Probab=96.50 E-value=0.0013 Score=57.75 Aligned_cols=43 Identities=28% Similarity=0.628 Sum_probs=38.4
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
.....+||+|-|.-++|.+.|...|.+|-.-...+++ ||||||
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfV 237 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFV 237 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceee
Confidence 3446789999999999999999999999999999997 479998
No 149
>KOG1995|consensus
Probab=96.45 E-value=0.0019 Score=59.33 Aligned_cols=75 Identities=19% Similarity=0.285 Sum_probs=65.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEE--------EEE--------CCEEEEEecC-HHHHHHHHHhCCcEECC
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC--------DIV--------RNYGFVHIDS-PDINKCIKELNGMMVDG 104 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~--------~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g 104 (346)
....+|||-+||..+++++|.++|.++|.|..= .|- |+-|.|.|++ ..|+.|+..++++.+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 456789999999999999999999999988431 111 7999999999 99999999999999999
Q ss_pred EEEEEEEeeccC
Q psy16419 105 KPMKVVVAGFIS 116 (346)
Q Consensus 105 ~~l~v~~a~~~~ 116 (346)
.+|+|..+..+.
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999999887744
No 150
>KOG4454|consensus
Probab=96.39 E-value=0.00072 Score=57.95 Aligned_cols=89 Identities=20% Similarity=0.253 Sum_probs=74.8
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCCcEEEEcC----CCCCCCHHHHHHhhcCCCCeEEEEE
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGN----LSDNTRAPEVRELFVPYGTVVECDI 76 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~~~lfV~n----Lp~~~~e~~L~~~F~~~G~v~~~~i 76 (346)
+|||.|+++-...-|++.+||..+.+.++.++. +.|+ |...++++.++..|+..|.+..+++
T Consensus 51 Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~--------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~ 116 (267)
T KOG4454|consen 51 FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL--------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRI 116 (267)
T ss_pred eeeeecccccchhhhhhhcccchhccchhhccc--------------ccCCCcchhhhhcchhhheeeecccCCCCCccc
Confidence 589999999999999999999999999886654 3444 7778999999999999999998888
Q ss_pred E-------CCEEEEEecC-HHHHHHHHHhCCcEEC
Q psy16419 77 V-------RNYGFVHIDS-PDINKCIKELNGMMVD 103 (346)
Q Consensus 77 ~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~ 103 (346)
. +.++|+.+.. .+.-.++....+...-
T Consensus 117 ~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 117 PTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred cccccCCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 7 5799999988 8777888776665543
No 151
>KOG1996|consensus
Probab=96.35 E-value=0.0087 Score=53.58 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=48.7
Q ss_pred HHHHHhhcCCCCeEEEEEE---------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 59 PEVRELFVPYGTVVECDIV---------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 59 ~~L~~~F~~~G~v~~~~i~---------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+++++.+++||+|..|.|. .---||+|+. ++|.+|+..|||..|+|+.+...+..-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 4678889999999999887 2356999999 999999999999999999988877554
No 152
>KOG2314|consensus
Probab=96.34 E-value=0.0071 Score=58.70 Aligned_cols=72 Identities=25% Similarity=0.277 Sum_probs=58.3
Q ss_pred CCCcEEEEcCCCCCCCH------HHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEEC-CEE
Q psy16419 42 TPTTKVFVGNLSDNTRA------PEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVD-GKP 106 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e------~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~-g~~ 106 (346)
.-.+.|+|.|+|---.. .-|..+|+++|+|+...++ +||.|++|.+ .+|+.|++.|||+.++ .++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 34578999999853222 3467889999999998887 7999999999 9999999999999986 457
Q ss_pred EEEEEee
Q psy16419 107 MKVVVAG 113 (346)
Q Consensus 107 l~v~~a~ 113 (346)
+.|..-+
T Consensus 136 f~v~~f~ 142 (698)
T KOG2314|consen 136 FFVRLFK 142 (698)
T ss_pred EEeehhh
Confidence 7776543
No 153
>KOG0533|consensus
Probab=96.16 E-value=0.0058 Score=54.29 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=31.8
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV 340 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~ 340 (346)
.++|+|.|||+.|+++||++||..||.+..+-|+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vh 116 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVH 116 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeec
Confidence 4789999999999999999999999999999886
No 154
>KOG2202|consensus
Probab=96.15 E-value=0.0019 Score=56.77 Aligned_cols=56 Identities=20% Similarity=0.388 Sum_probs=47.8
Q ss_pred HHHHHhhc-CCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 59 PEVRELFV-PYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 59 ~~L~~~F~-~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+++...|+ +||+|+++.+- +|-.+|.|.. ++|++|+..||+..+.|++|..++..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 34555555 89999988665 7899999999 999999999999999999999988654
No 155
>PLN03120 nucleic acid binding protein; Provisional
Probab=95.93 E-value=0.013 Score=52.40 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=33.7
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 38 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~ 38 (346)
+|||+|+++++|+.|+. |||..|.|+.|.|.++..-.
T Consensus 45 fAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 45 IAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred EEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 58999999999999996 99999999999999987544
No 156
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.86 E-value=0.054 Score=39.00 Aligned_cols=66 Identities=24% Similarity=0.440 Sum_probs=42.0
Q ss_pred EEEEcCCC--CCCCHHHHHHhhcCCCC-----eEEEEEECCEEEEEecCHHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 46 KVFVGNLS--DNTRAPEVRELFVPYGT-----VVECDIVRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 46 ~lfV~nLp--~~~~e~~L~~~F~~~G~-----v~~~~i~~g~afV~f~~~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
++|| |+. ..++..+|..++...+. |-.++|...|.||+-..+.|..++..|++..+.|++++|+.|
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPEEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-TT-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECHHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4566 443 46788888888876643 567788899999999989999999999999999999999875
No 157
>KOG4307|consensus
Probab=95.74 E-value=0.025 Score=56.33 Aligned_cols=69 Identities=14% Similarity=0.253 Sum_probs=58.7
Q ss_pred CCc-EEEEcCCCCCCCHHHHHHhhcCCCCeE-EEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 43 PTT-KVFVGNLSDNTRAPEVRELFVPYGTVV-ECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 43 ~~~-~lfV~nLp~~~~e~~L~~~F~~~G~v~-~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
+++ .|-+.|+|++++-+||-++|..|-.+- +|.+. .|-|.|.|++ ++|.+|...|+++.|..+++.+.+
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 344 678899999999999999999996553 34444 5889999999 999999999999999999988764
No 158
>KOG4660|consensus
Probab=95.68 E-value=0.0078 Score=58.38 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=34.6
Q ss_pred CCCCCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEE
Q psy16419 300 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDV 339 (346)
Q Consensus 300 ~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i 339 (346)
+.....+..+|+|-|||.+|++++|+.+|+.||+|..|+-
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~ 107 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE 107 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc
Confidence 3344566789999999999999999999999999999754
No 159
>KOG4209|consensus
Probab=95.54 E-value=0.0081 Score=53.30 Aligned_cols=43 Identities=26% Similarity=0.434 Sum_probs=37.5
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
..+...+||+|+.+.+|.+++..+|+-||.|..+.|. |+|+||
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yv 148 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYV 148 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEE
Confidence 3446789999999999999999999999999988885 568775
No 160
>KOG4849|consensus
Probab=95.53 E-value=0.29 Score=45.10 Aligned_cols=66 Identities=17% Similarity=0.312 Sum_probs=52.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCC--eEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEE
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPYGT--VVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~G~--v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v 109 (346)
.-.+|||||-+.+|++||.+....-|- +.++++. ||||.|...+ .+..+.++.|-.++|.|..-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 456899999999999999888776663 3333333 8999999999 8888888989999999874443
No 161
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=95.26 E-value=0.024 Score=43.91 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=23.3
Q ss_pred ceEEEecCCCCCCHHHHHHHhhcccceEEEEEecc
Q psy16419 308 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN 342 (346)
Q Consensus 308 ~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k~ 342 (346)
+.|+|.+++..++-++|+++|++||.|.-|++.+|
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G 36 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG 36 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC
Confidence 46899999999999999999999999999999875
No 162
>KOG2416|consensus
Probab=95.24 E-value=0.016 Score=56.61 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=62.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhc-CCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEE---CCEEEEEEEe
Q psy16419 40 PNTPTTKVFVGNLSDNTRAPEVRELFV-PYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMV---DGKPMKVVVA 112 (346)
Q Consensus 40 ~~~~~~~lfV~nLp~~~~e~~L~~~F~-~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~---~g~~l~v~~a 112 (346)
+...+..|+|.||-.-.|.-+|+.++. ..|.|++..|- |..|||.|.+ ++|...+.+|||..+ +.+.|.+.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 345678899999999999999999998 45556665333 8999999999 999999999999987 5678888887
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
..
T Consensus 520 ~~ 521 (718)
T KOG2416|consen 520 RA 521 (718)
T ss_pred ch
Confidence 65
No 163
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.13 E-value=0.09 Score=42.36 Aligned_cols=72 Identities=14% Similarity=0.227 Sum_probs=57.2
Q ss_pred CCCcEEEEcCCCCCCCH----HHHHHhhcCCCCeEEEEEE-CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRA----PEVRELFVPYGTVVECDIV-RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e----~~L~~~F~~~G~v~~~~i~-~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.+..+|.|.=|...+.. ..+...++.||+|.+|.+. |.-|.|.|.+ .+|-+|+.++.. ...|..+.+.|-..
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqqr 161 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQR 161 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecccc
Confidence 56788989776665543 3455567899999999888 8999999999 999999998865 56677888887654
No 164
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=95.04 E-value=0.036 Score=40.51 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=28.3
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCC
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 37 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~ 37 (346)
|+|.|.+++.|++|.+.|+|..+.|.+|.|......
T Consensus 42 AilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 42 AILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred EEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 789999999999999999999999999999987543
No 165
>PLN03121 nucleic acid binding protein; Provisional
Probab=94.88 E-value=0.039 Score=48.70 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=32.1
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 36 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~ 36 (346)
+|||+|+++++|+.|+. |||..|.+++|.|..+..
T Consensus 46 fAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 46 TAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred EEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 48999999999999996 999999999999988664
No 166
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.80 E-value=0.16 Score=37.09 Aligned_cols=53 Identities=15% Similarity=0.338 Sum_probs=41.3
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEECCEEEEEecC-HHHHHHHHHhC
Q psy16419 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELN 98 (346)
Q Consensus 45 ~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~ 98 (346)
...+|+ .|.++...||.++|+.||.|.---|.-.-|||...+ +.|..++..++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHHhc
Confidence 345554 999999999999999999986555558899999999 99999988775
No 167
>PLN03213 repressor of silencing 3; Provisional
Probab=94.78 E-value=0.032 Score=53.51 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=33.3
Q ss_pred CeEEEecCH--HHHHHHHHHhCCCeeCCeeeEEeecCC
Q psy16419 1 MSSGHMEND--EEGRTAIKELNGQIVNEKPLKIEAATS 36 (346)
Q Consensus 1 ~aFV~F~~~--e~A~~Al~~lng~~l~g~~i~v~~~~~ 36 (346)
+|||+|.+. +++.+||..|||..+.|+.|+|..+++
T Consensus 50 FAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 50 FAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred eEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 699999987 789999999999999999999999873
No 168
>KOG0115|consensus
Probab=94.77 E-value=0.05 Score=48.03 Aligned_cols=33 Identities=18% Similarity=0.448 Sum_probs=30.8
Q ss_pred ceEEEecCCCCCCHHHHHHHhhcccceEEEEEe
Q psy16419 308 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV 340 (346)
Q Consensus 308 ~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~ 340 (346)
..|||.||+.-+..+.|.+-|+.||+|++..++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~ 64 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAK 64 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheee
Confidence 369999999999999999999999999998876
No 169
>KOG2591|consensus
Probab=94.29 E-value=0.12 Score=50.45 Aligned_cols=91 Identities=21% Similarity=0.337 Sum_probs=66.5
Q ss_pred HHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcC--CCCeEEEEEE-CCEEEEEecC-
Q psy16419 12 GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVP--YGTVVECDIV-RNYGFVHIDS- 87 (346)
Q Consensus 12 A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~--~G~v~~~~i~-~g~afV~f~~- 87 (346)
--.+++...+..++.+-.+|..... .|-|.++-||..+-.|+++.||+. +-++.+|..- ..-=||+|++
T Consensus 150 I~Evlresp~VqvDekgekVrp~~k-------RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~nWyITfesd 222 (684)
T KOG2591|consen 150 IVEVLRESPNVQVDEKGEKVRPNHK-------RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNWYITFESD 222 (684)
T ss_pred HHHHHhcCCCceeccCccccccCcc-------eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCceEEEeecc
Confidence 3455666666777766666655443 467888999999999999999974 6778888766 5556999999
Q ss_pred HHHHHHHHHhCC--cEECCEEEEE
Q psy16419 88 PDINKCIKELNG--MMVDGKPMKV 109 (346)
Q Consensus 88 ~~a~~Ai~~l~g--~~~~g~~l~v 109 (346)
.+|+.|.+.|.. ++|.|++|..
T Consensus 223 ~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 223 TDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred hhHHHHHHHHHHHHHhhcCcchhh
Confidence 999999876643 3455655443
No 170
>KOG0108|consensus
Probab=94.23 E-value=0.048 Score=52.77 Aligned_cols=38 Identities=29% Similarity=0.493 Sum_probs=35.0
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCC
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 38 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~ 38 (346)
+||++|.+.++|+.|++.|||.++.|++|+|.++...+
T Consensus 62 ~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~ 99 (435)
T KOG0108|consen 62 FGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRK 99 (435)
T ss_pred eeeEecCchhhHHHHHHhcCCcccCCceEEeecccccc
Confidence 58999999999999999999999999999999987543
No 171
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.00 E-value=0.19 Score=37.42 Aligned_cols=64 Identities=11% Similarity=0.152 Sum_probs=45.3
Q ss_pred eEEEecCHHHHHHHHHHhCC--CeeCCeeeEEeecC--CCCC------CCCCCcEEEEcCCCCCCCHHHHHHhhc
Q psy16419 2 SSGHMENDEEGRTAIKELNG--QIVNEKPLKIEAAT--SRKG------PNTPTTKVFVGNLSDNTRAPEVRELFV 66 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng--~~l~g~~i~v~~~~--~~~~------~~~~~~~lfV~nLp~~~~e~~L~~~F~ 66 (346)
|.|.|++++-|++-++ +.. ..+++..+.|.... .... .....++|.|.|||..+++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 7899999999999887 333 44556665554432 2111 124567899999999999999998654
No 172
>KOG4208|consensus
Probab=93.84 E-value=0.062 Score=45.96 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=32.0
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 36 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~ 36 (346)
|||+|++++.|+=|.+.||+..|.++-+.+..-.+
T Consensus 95 AFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 95 AFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred EEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 89999999999999999999999999888876554
No 173
>KOG1855|consensus
Probab=93.33 E-value=0.14 Score=48.51 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=34.4
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEec
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 341 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k 341 (346)
.+.++|.+.|||.+-.-|.|.+||+.+|.|..|+|.+
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIck 265 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICK 265 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecC
Confidence 4688999999999999999999999999999999963
No 174
>KOG2253|consensus
Probab=93.02 E-value=0.055 Score=53.78 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=69.2
Q ss_pred EEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEECCEEEEEecC-HHHHHHHHHhCCcEECCEEEE
Q psy16419 30 KIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMK 108 (346)
Q Consensus 30 ~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~ 108 (346)
++.+..+...+..+..++||+|+...+..+-++.+...+|.|.++...+ |||.+|.. .-..+|+..++-..++|..+.
T Consensus 26 ~~~p~qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 26 YVVPIQPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-FGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred cccCCcccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-hcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 4444555555557788999999999999999999999999998887666 99999999 999999999998899888877
Q ss_pred EEEe
Q psy16419 109 VVVA 112 (346)
Q Consensus 109 v~~a 112 (346)
+...
T Consensus 105 ~~~d 108 (668)
T KOG2253|consen 105 ENVD 108 (668)
T ss_pred ccch
Confidence 7664
No 175
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=92.56 E-value=0.21 Score=37.93 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=30.8
Q ss_pred ceEEEecCCCCCCHHHHHHHhhcc--cceEEEEEe--------cceeeC
Q psy16419 308 FKIFIGNVNPGTSVELIRPLFEKY--GKVVECDVV--------KNYGFV 346 (346)
Q Consensus 308 ~~lfV~nLp~~~tee~L~~~F~~~--G~I~~v~i~--------k~fgFV 346 (346)
++|-|+|||-..|.++|.+++... |...=+.+. .|||||
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFV 50 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFV 50 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEE
Confidence 589999999999999999998754 555544443 579997
No 176
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.42 E-value=0.31 Score=41.42 Aligned_cols=73 Identities=18% Similarity=0.209 Sum_probs=48.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcC-CCCe---EEEEEE----------CCEEEEEecC-HHHHHHHHHhCCcEECC--
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVP-YGTV---VECDIV----------RNYGFVHIDS-PDINKCIKELNGMMVDG-- 104 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~-~G~v---~~~~i~----------~g~afV~f~~-~~a~~Ai~~l~g~~~~g-- 104 (346)
....+|.|++||+.+||+++.+.++. ++.- ..+.-. -.-|||.|.+ +++..-...++|+.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34679999999999999999998887 6655 233211 2478999999 99999999999987732
Q ss_pred ---EEEEEEEeec
Q psy16419 105 ---KPMKVVVAGF 114 (346)
Q Consensus 105 ---~~l~v~~a~~ 114 (346)
....|++|--
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2445555433
No 177
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.65 E-value=1 Score=38.54 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=43.8
Q ss_pred CHHHHHHhhcCCCCeEEEEEECC--EEEEEecC-HHHHHHHHHhC--CcEECCEEEEEEEeec
Q psy16419 57 RAPEVRELFVPYGTVVECDIVRN--YGFVHIDS-PDINKCIKELN--GMMVDGKPMKVVVAGF 114 (346)
Q Consensus 57 ~e~~L~~~F~~~G~v~~~~i~~g--~afV~f~~-~~a~~Ai~~l~--g~~~~g~~l~v~~a~~ 114 (346)
..+.|+++|..++.+......+. -..|.|.+ +.|.+|...|+ +..+.|..++|-++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45789999999999998888854 46889999 99999999999 9999999999998866
No 178
>KOG2135|consensus
Probab=90.54 E-value=0.16 Score=48.71 Aligned_cols=70 Identities=7% Similarity=0.158 Sum_probs=57.2
Q ss_pred CcEEEEcCCCCCCC-HHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 44 TTKVFVGNLSDNTR-APEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 44 ~~~lfV~nLp~~~~-e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.+.|-+.-.|..++ .++|...|.+||.|..|.+- ---|.|+|.+ .+|-+|.. ..+..|+++.|+|.|-++
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 34455555565554 47899999999999999887 3678999999 88877766 689999999999999888
No 179
>KOG2202|consensus
Probab=90.40 E-value=0.2 Score=44.38 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=31.0
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 35 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~ 35 (346)
.||.|..+|+|++|++.||+..+.|++|......
T Consensus 113 VYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 113 VYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred hhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 4899999999999999999999999999887654
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=90.25 E-value=1.4 Score=30.52 Aligned_cols=52 Identities=12% Similarity=0.272 Sum_probs=40.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCC----CCeEEEEEE-CCEEEEEecC-HHHHHHHHHh
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPY----GTVVECDIV-RNYGFVHIDS-PDINKCIKEL 97 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~----G~v~~~~i~-~g~afV~f~~-~~a~~Ai~~l 97 (346)
...|+|.++. +++.++|+.+|..| ++ ..|..+ ---|-|.|.+ +.|.+|+..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCCcEEEEECCHHHHHHHHHcC
Confidence 3579999985 57889999999988 43 455555 4678899999 9999999764
No 181
>KOG2068|consensus
Probab=90.20 E-value=0.082 Score=48.56 Aligned_cols=70 Identities=21% Similarity=0.421 Sum_probs=56.2
Q ss_pred cEEEEcCCCCCCCHHHH---HHhhcCCCCeEEEEEEC-----------CEEEEEecC-HHHHHHHHHhCCcEECCEEEEE
Q psy16419 45 TKVFVGNLSDNTRAPEV---RELFVPYGTVVECDIVR-----------NYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109 (346)
Q Consensus 45 ~~lfV~nLp~~~~e~~L---~~~F~~~G~v~~~~i~~-----------g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v 109 (346)
.-+||-+|+..+..+++ .+.|.+||.|..+.+.+ .-++|+|.. ++|..||...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45788888876655544 36789999999988872 237999999 9999999999999999999777
Q ss_pred EEeec
Q psy16419 110 VVAGF 114 (346)
Q Consensus 110 ~~a~~ 114 (346)
.+...
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 76654
No 182
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=89.51 E-value=0.44 Score=31.81 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=24.0
Q ss_pred eEEEecCCCCCCHHHHHHHhhcccceEEEEEe
Q psy16419 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV 340 (346)
Q Consensus 309 ~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~ 340 (346)
.|=|.+.+.+..+. +..+|..||+|++..+-
T Consensus 3 wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~ 33 (53)
T PF14605_consen 3 WISVSGFPPDLAEE-VLEHFASFGEIVDIYVP 33 (53)
T ss_pred EEEEEeECchHHHH-HHHHHHhcCCEEEEEcC
Confidence 46777888666644 55599999999999886
No 183
>KOG3152|consensus
Probab=89.10 E-value=0.48 Score=41.99 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=31.7
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV 340 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~ 340 (346)
+..||+.|||+.+.-..||++|++||.|-+|.+-
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylq 107 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQ 107 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEec
Confidence 4579999999999999999999999999999884
No 184
>KOG4285|consensus
Probab=88.66 E-value=0.73 Score=41.82 Aligned_cols=65 Identities=26% Similarity=0.305 Sum_probs=49.4
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEECCEE-EEEEE
Q psy16419 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKP-MKVVV 111 (346)
Q Consensus 45 ~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~-l~v~~ 111 (346)
.=|-|-++|+.-. .-|..+|++||.|++.... -.+-+|.|.+ .+|++||.. ||+.|+|.. |-|+.
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKP 266 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeee
Confidence 4455667776544 4567889999999887665 3588999999 999999984 999998864 44544
No 185
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.68 E-value=3.3 Score=28.99 Aligned_cols=54 Identities=9% Similarity=0.184 Sum_probs=43.2
Q ss_pred CCCHHHHHHhhcCCCCeEEEEEECCEEEEEecC-HHHHHHHHHhCCcEECCEEEEE
Q psy16419 55 NTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109 (346)
Q Consensus 55 ~~~e~~L~~~F~~~G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v 109 (346)
.++-++++..+..|+- .+|...+--=||.|.+ .+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5677899999999963 4555445555899999 9999999999999988777654
No 186
>KOG4676|consensus
Probab=85.02 E-value=0.28 Score=45.95 Aligned_cols=101 Identities=13% Similarity=0.087 Sum_probs=73.8
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCC----------------------------------------
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP---------------------------------------- 40 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~---------------------------------------- 40 (346)
.+||.|.|...+.-|-. |....+-++.|.|.+......+
T Consensus 54 tcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ai 132 (479)
T KOG4676|consen 54 TCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAI 132 (479)
T ss_pred eEEEeccCCcceeHHhh-hccceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccce
Confidence 37899999988888754 7777777777666543211000
Q ss_pred ---------------CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE----CCEEEEEecC-HHHHHHHHHhCCc
Q psy16419 41 ---------------NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV----RNYGFVHIDS-PDINKCIKELNGM 100 (346)
Q Consensus 41 ---------------~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~----~g~afV~f~~-~~a~~Ai~~l~g~ 100 (346)
..-..+++|.+|+..+...++-+.|..+|.|....+. .-+|.++|.. .....|+. ++|.
T Consensus 133 lktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gr 211 (479)
T KOG4676|consen 133 LKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGR 211 (479)
T ss_pred ecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcch
Confidence 0112579999999999999999999999999877666 5678899988 77777776 4666
Q ss_pred EEC
Q psy16419 101 MVD 103 (346)
Q Consensus 101 ~~~ 103 (346)
++.
T Consensus 212 e~k 214 (479)
T KOG4676|consen 212 ERK 214 (479)
T ss_pred hhh
Confidence 554
No 187
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=84.82 E-value=7.5 Score=30.25 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=43.9
Q ss_pred CcEEEE-cCCCCCCCHHHHHHhhcCCCC-eEEEEEE------CCEEEEEecC-HHHHHHHHHhCCcEECC
Q psy16419 44 TTKVFV-GNLSDNTRAPEVRELFVPYGT-VVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDG 104 (346)
Q Consensus 44 ~~~lfV-~nLp~~~~e~~L~~~F~~~G~-v~~~~i~------~g~afV~f~~-~~a~~Ai~~l~g~~~~g 104 (346)
.+.|.| ...|+.++.++|..+.+.+-. |..++|+ +-.+.+.|.+ ++|..-...+||+.++-
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344444 445555666677766666644 6677777 3478999999 99999999999998753
No 188
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=83.71 E-value=4.6 Score=41.55 Aligned_cols=69 Identities=9% Similarity=0.145 Sum_probs=53.6
Q ss_pred cEEEEcCCC--CCCCHHHHHHhhcCCCCe-----EEEEEECCEEEEEecCHHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 45 TKVFVGNLS--DNTRAPEVRELFVPYGTV-----VECDIVRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 45 ~~lfV~nLp--~~~~e~~L~~~F~~~G~v-----~~~~i~~g~afV~f~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.++|| |+- ..++..+|-.+...-+.| -.|+|...|.||+...+.|...+..|++..+.|++|.|+.+..
T Consensus 487 ~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~s~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 487 QLYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred EEEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCCceEEEcChhhHHHHHHHhccccccCCceEEEECCC
Confidence 45666 453 467778887777655544 4566678999999988888999999999999999999998753
No 189
>KOG4574|consensus
Probab=83.26 E-value=0.61 Score=47.94 Aligned_cols=68 Identities=25% Similarity=0.306 Sum_probs=57.7
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEC--CEEEEEecC-HHHHHHHHHhCCcEE--CCEEEEEEEeec
Q psy16419 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVR--NYGFVHIDS-PDINKCIKELNGMMV--DGKPMKVVVAGF 114 (346)
Q Consensus 47 lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~~--g~afV~f~~-~~a~~Ai~~l~g~~~--~g~~l~v~~a~~ 114 (346)
.++.|.+-..+..-|..+|+.||.|.+.+..| ..+.|+|.. +.|..|+++|+|+++ -|-+.+|.+++.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 34445555677788999999999999998875 579999999 999999999999976 588999999887
No 190
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=82.96 E-value=1 Score=22.91 Aligned_cols=17 Identities=35% Similarity=1.042 Sum_probs=15.0
Q ss_pred ccccCCCCCCCCCCCCC
Q psy16419 126 FFIRCGRGGHWSKECPR 142 (346)
Q Consensus 126 ~~~~~~~~g~~~~~~~~ 142 (346)
.+|+++..||++++||.
T Consensus 2 ~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 2 KCFNCGEPGHIARDCPK 18 (18)
T ss_dssp BCTTTSCSSSCGCTSSS
T ss_pred cCcCCCCcCcccccCcc
Confidence 58999999999999873
No 191
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=81.62 E-value=0.9 Score=41.83 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=31.9
Q ss_pred EEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q psy16419 3 SGHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 36 (346)
Q Consensus 3 FV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~ 36 (346)
||.|.+.|+|..||.+.+|..++|+.|+..+...
T Consensus 169 YITy~~kedAarcIa~vDgs~~DGr~lkatYGTT 202 (480)
T COG5175 169 YITYSTKEDAARCIAEVDGSLLDGRVLKATYGTT 202 (480)
T ss_pred EEEecchHHHHHHHHHhccccccCceEeeecCch
Confidence 8999999999999999999999999999988764
No 192
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=80.64 E-value=3.2 Score=33.93 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=28.3
Q ss_pred EEEecCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q psy16419 3 SGHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 35 (346)
Q Consensus 3 FV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~ 35 (346)
+|.|.+-+.|.+|+. ++|..+.|+.|.|..-.
T Consensus 74 wVTF~dg~sALaals-~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 74 WVTFRDGQSALAALS-LDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp EEEESSCHHHHHHHH-GCCSEETTEEEEEEE--
T ss_pred EEEECccHHHHHHHc-cCCcEECCEEEEEEeCC
Confidence 689999999999998 99999999999998644
No 193
>KOG2253|consensus
Probab=79.42 E-value=1.7 Score=43.54 Aligned_cols=40 Identities=28% Similarity=0.396 Sum_probs=36.6
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEecceee
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGF 345 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k~fgF 345 (346)
.+..++||+|+...+..+=++.+-..+|.|.++..++ |||
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-fgf 77 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-FGF 77 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-hcc
Confidence 3456899999999999999999999999999999888 888
No 194
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=78.39 E-value=3.8 Score=28.74 Aligned_cols=29 Identities=7% Similarity=0.186 Sum_probs=26.0
Q ss_pred EEEecCHHHHHHHHHHhCCCeeCCeeeEE
Q psy16419 3 SGHMENDEEGRTAIKELNGQIVNEKPLKI 31 (346)
Q Consensus 3 FV~F~~~e~A~~Al~~lng~~l~g~~i~v 31 (346)
||.|.+.++|+++....+|..+.+..+.+
T Consensus 37 YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 37 YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 79999999999999999999988877654
No 195
>KOG0149|consensus
Probab=74.96 E-value=2.3 Score=37.34 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=27.4
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 35 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~ 35 (346)
|||.|.|.|+|.+|.+. ..-.|+|++..+..+-
T Consensus 57 GfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 57 GFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 89999999999999983 4567889888877654
No 196
>KOG1995|consensus
Probab=74.54 E-value=2 Score=39.97 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=27.4
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEE
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVE 336 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~ 336 (346)
..+|||-+||.++|+.+|.+.|.++|.|..
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikr 95 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKR 95 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceecc
Confidence 457999999999999999999999998864
No 197
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=71.78 E-value=2.5 Score=25.58 Aligned_cols=18 Identities=44% Similarity=1.043 Sum_probs=11.3
Q ss_pred cccccCCCCCCCCCCCCC
Q psy16419 125 IFFIRCGRGGHWSKECPR 142 (346)
Q Consensus 125 ~~~~~~~~~g~~~~~~~~ 142 (346)
.-|++|+++.||+++|..
T Consensus 3 ~~CprC~kg~Hwa~~C~s 20 (36)
T PF14787_consen 3 GLCPRCGKGFHWASECRS 20 (36)
T ss_dssp -C-TTTSSSCS-TTT---
T ss_pred ccCcccCCCcchhhhhhh
Confidence 468999999999999875
No 198
>KOG0804|consensus
Probab=67.96 E-value=17 Score=35.07 Aligned_cols=62 Identities=13% Similarity=0.273 Sum_probs=53.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCC-CCeEEEEEE------CCEEEEEecC-HHHHHHHHHhCCcEECC
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPY-GTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDG 104 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~-G~v~~~~i~------~g~afV~f~~-~~a~~Ai~~l~g~~~~g 104 (346)
.++.|+|-.+|..++-.||-.+...+ -.|.+++|+ +-...|.|.+ ++|..-...+||+.++-
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 37899999999999999999998766 457888888 3478999999 99999999999998864
No 199
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=67.63 E-value=6.4 Score=27.09 Aligned_cols=18 Identities=28% Similarity=0.456 Sum_probs=16.2
Q ss_pred HHHHHHhhcccceEEEEE
Q psy16419 322 ELIRPLFEKYGKVVECDV 339 (346)
Q Consensus 322 e~L~~~F~~~G~I~~v~i 339 (346)
++||+.|++.|+|.-+-|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999988866
No 200
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=66.22 E-value=6.6 Score=29.99 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=24.7
Q ss_pred EEEecCHHHHHHHHHHhCCCeeCCeee-EEeec
Q psy16419 3 SGHMENDEEGRTAIKELNGQIVNEKPL-KIEAA 34 (346)
Q Consensus 3 FV~F~~~e~A~~Al~~lng~~l~g~~i-~v~~~ 34 (346)
-|.|+++.+|++||. .||..+.|.-| -|.+.
T Consensus 58 ~I~Y~~~~~A~rAL~-~NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 58 HITYDNPLSAQRALQ-KNGTIFSGSLMVGVKPC 89 (100)
T ss_dssp EEEESSHHHHHHHHT-TTTEEETTCEEEEEEE-
T ss_pred EEECCCHHHHHHHHH-hCCeEEcCcEEEEEEEc
Confidence 479999999999998 79999988544 45554
No 201
>KOG2891|consensus
Probab=65.72 E-value=4.1 Score=36.61 Aligned_cols=35 Identities=14% Similarity=0.361 Sum_probs=27.8
Q ss_pred CCcEEEEcCCCCC------------CCHHHHHHhhcCCCCeEEEEEE
Q psy16419 43 PTTKVFVGNLSDN------------TRAPEVRELFVPYGTVVECDIV 77 (346)
Q Consensus 43 ~~~~lfV~nLp~~------------~~e~~L~~~F~~~G~v~~~~i~ 77 (346)
..-+||+.+||-. -+++-|...|+.||.|..|.|+
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 3457888888732 4567899999999999999887
No 202
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=61.18 E-value=2.5 Score=34.58 Aligned_cols=75 Identities=15% Similarity=0.059 Sum_probs=54.3
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCC---CcE--EEEcCCCCC-CCHHHHHHhhcCCCCeEEEE
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP---TTK--VFVGNLSDN-TRAPEVRELFVPYGTVVECD 75 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~---~~~--lfV~nLp~~-~~e~~L~~~F~~~G~v~~~~ 75 (346)
..+.|.++++++++++ .....+.+..+.+....+....... ... |-|.|||.. .+++-|+.+-+.+|.+.+++
T Consensus 58 fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD 136 (153)
T PF14111_consen 58 FLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVD 136 (153)
T ss_pred EEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEE
Confidence 4678999999999887 4556677888888776644332211 223 445799975 67788999999999999887
Q ss_pred EE
Q psy16419 76 IV 77 (346)
Q Consensus 76 i~ 77 (346)
..
T Consensus 137 ~~ 138 (153)
T PF14111_consen 137 EN 138 (153)
T ss_pred cC
Confidence 65
No 203
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=61.11 E-value=7.9 Score=31.49 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=27.2
Q ss_pred EEEecCCCC-CCHHHHHHHhhcccceEEEEEe
Q psy16419 310 IFIGNVNPG-TSVELIRPLFEKYGKVVECDVV 340 (346)
Q Consensus 310 lfV~nLp~~-~tee~L~~~F~~~G~I~~v~i~ 340 (346)
|=|.|||.. .+++-|+++-+.+|++++++..
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 667799996 7789999999999999999874
No 204
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=59.31 E-value=19 Score=26.48 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=19.5
Q ss_pred eEEEecCCCCCCHHHHHHHhhcccceEEE
Q psy16419 309 KIFIGNVNPGTSVELIRPLFEKYGKVVEC 337 (346)
Q Consensus 309 ~lfV~nLp~~~tee~L~~~F~~~G~I~~v 337 (346)
..||. .|.++-..||.+||++||.|.=-
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~Vs 38 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIYVS 38 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEEEE
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEEEE
Confidence 35554 89999999999999999998533
No 205
>KOG4849|consensus
Probab=59.05 E-value=2.7 Score=38.98 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=22.4
Q ss_pred ceEEEecCCCCCCHHHHHHHhhcccc
Q psy16419 308 FKIFIGNVNPGTSVELIRPLFEKYGK 333 (346)
Q Consensus 308 ~~lfV~nLp~~~tee~L~~~F~~~G~ 333 (346)
..+|||||-|-+|++||-+....-|-
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~ 106 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGL 106 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhH
Confidence 35899999999999999988877763
No 206
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=58.61 E-value=12 Score=26.61 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=18.0
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeec
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAA 34 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~ 34 (346)
+||+-.. +.|+++++.|++..+.|+++.|+.+
T Consensus 43 S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 43 SFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4555543 4788899999999999999999864
No 207
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=57.61 E-value=4.7 Score=23.84 Aligned_cols=19 Identities=42% Similarity=1.129 Sum_probs=16.7
Q ss_pred ccccccCCCCCCCCCCCCC
Q psy16419 124 VIFFIRCGRGGHWSKECPR 142 (346)
Q Consensus 124 ~~~~~~~~~~g~~~~~~~~ 142 (346)
.-.|..|+..|||..+||.
T Consensus 8 ~Y~C~~C~~~GH~i~dCP~ 26 (32)
T PF13696_consen 8 GYVCHRCGQKGHWIQDCPT 26 (32)
T ss_pred CCEeecCCCCCccHhHCCC
Confidence 4468899999999999998
No 208
>KOG2891|consensus
Probab=57.11 E-value=9.6 Score=34.33 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=26.0
Q ss_pred ceEEEecCCCC------------CCHHHHHHHhhcccceEEEEEe
Q psy16419 308 FKIFIGNVNPG------------TSVELIRPLFEKYGKVVECDVV 340 (346)
Q Consensus 308 ~~lfV~nLp~~------------~tee~L~~~F~~~G~I~~v~i~ 340 (346)
.+||+.+||.. -+|.-|+..|+.||.|..|+|.
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 46777777643 3577899999999999999884
No 209
>KOG4008|consensus
Probab=56.33 E-value=8.5 Score=33.88 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=32.5
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEecceee
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGF 345 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k~fgF 345 (346)
...||+-|+|..+|++.|..+-++.|-++.+..---+||
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~~e~gl 78 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYNDEFGL 78 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhheecccchhh
Confidence 567999999999999999999999998887765444443
No 210
>KOG2318|consensus
Probab=55.25 E-value=51 Score=33.07 Aligned_cols=71 Identities=20% Similarity=0.348 Sum_probs=57.2
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHhhcCC----CCeEEEEEE----------------C----------------------
Q psy16419 42 TPTTKVFVGNLSD-NTRAPEVRELFVPY----GTVVECDIV----------------R---------------------- 78 (346)
Q Consensus 42 ~~~~~lfV~nLp~-~~~e~~L~~~F~~~----G~v~~~~i~----------------~---------------------- 78 (346)
..+.+|-|-||.+ .+..++|.-+|+.| |.|.+|.|- .
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 4577899999998 57888999998866 689998875 0
Q ss_pred -----------------CEEEEEecC-HHHHHHHHHhCCcEECC--EEEEEEEe
Q psy16419 79 -----------------NYGFVHIDS-PDINKCIKELNGMMVDG--KPMKVVVA 112 (346)
Q Consensus 79 -----------------g~afV~f~~-~~a~~Ai~~l~g~~~~g--~~l~v~~a 112 (346)
-||.|+|.+ +.|.......+|.++.. ..|-+++-
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 289999999 99999999999999964 44555543
No 211
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=54.94 E-value=8.7 Score=23.31 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHhhcccc
Q psy16419 317 PGTSVELIRPLFEKYGK 333 (346)
Q Consensus 317 ~~~tee~L~~~F~~~G~ 333 (346)
.++++++|++.|.+.++
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36899999999987654
No 212
>KOG2314|consensus
Probab=51.19 E-value=18 Score=36.02 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=27.0
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeC-CeeeEEee
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVN-EKPLKIEA 33 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~-g~~i~v~~ 33 (346)
.|++|++..+|++|++.|||..|. .++..|..
T Consensus 108 lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~ 140 (698)
T KOG2314|consen 108 LFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRL 140 (698)
T ss_pred EEEEecChhhHHHHHHhcccceecccceEEeeh
Confidence 699999999999999999998886 45666644
No 213
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=50.00 E-value=18 Score=28.08 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.8
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCC
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNE 26 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g 26 (346)
|+.+.|.+.++|+.-...+||+.++.
T Consensus 56 mVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 56 MVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEECCHHHHHHHHHHhCCCccCC
Confidence 78999999999999999999988864
No 214
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=49.79 E-value=27 Score=24.07 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=16.0
Q ss_pred HHHHHhhcCCCCeEEEEEE
Q psy16419 59 PEVRELFVPYGTVVECDIV 77 (346)
Q Consensus 59 ~~L~~~F~~~G~v~~~~i~ 77 (346)
++|+++|+..|.|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999876664
No 215
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=47.08 E-value=38 Score=31.43 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=39.0
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcC
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVP 67 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~ 67 (346)
|||.|++..+|+.|.+.+.... +..+.++.+...+ -|+=.||..+..+..++.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~-------DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD-------DIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc-------cccccccCCChHHHHHHHHHHH
Confidence 8999999999999998544433 2445666665433 3556788777677667665543
No 216
>KOG4410|consensus
Probab=46.35 E-value=32 Score=31.24 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=35.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCe-EEEEEE--CCEEEEEecC
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPYGTV-VECDIV--RNYGFVHIDS 87 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~G~v-~~~~i~--~g~afV~f~~ 87 (346)
.+-|+++||+.++.-.||+..+.+-+-+ .++... +|-||++|.+
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~ 376 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGN 376 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCC
Confidence 4569999999999999999999877653 344444 7889999986
No 217
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=39.53 E-value=34 Score=29.28 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=26.1
Q ss_pred EEEecCHHHHHHHHHHhC--CCeeCCeeeEEeecC
Q psy16419 3 SGHMENDEEGRTAIKELN--GQIVNEKPLKIEAAT 35 (346)
Q Consensus 3 FV~F~~~e~A~~Al~~ln--g~~l~g~~i~v~~~~ 35 (346)
.|.|.+.++|.+|...|+ +..+.|..+++..+.
T Consensus 35 ~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 35 RVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp EEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred EEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 589999999999999999 999999999887764
No 218
>KOG2318|consensus
Probab=39.24 E-value=37 Score=33.95 Aligned_cols=37 Identities=14% Similarity=0.255 Sum_probs=32.1
Q ss_pred CCCcceEEEecCCC-CCCHHHHHHHhhcc----cceEEEEEe
Q psy16419 304 SVGTFKIFIGNVNP-GTSVELIRPLFEKY----GKVVECDVV 340 (346)
Q Consensus 304 ~~~~~~lfV~nLp~-~~tee~L~~~F~~~----G~I~~v~i~ 340 (346)
...+++|=|-|+.| .+..+||..+|+.| |.|.+|.|-
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IY 212 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIY 212 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEec
Confidence 34578999999999 67799999999977 699999995
No 219
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=35.93 E-value=33 Score=21.64 Aligned_cols=19 Identities=42% Similarity=1.149 Sum_probs=16.9
Q ss_pred ccccccCCCCCCCCCCCCC
Q psy16419 124 VIFFIRCGRGGHWSKECPR 142 (346)
Q Consensus 124 ~~~~~~~~~~g~~~~~~~~ 142 (346)
...|.+|+..|||..+|+.
T Consensus 4 ~~~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 4 RVRCQKCGQKGHWTYECPN 22 (42)
T ss_pred CCcCcccCCCCcchhhCCC
Confidence 4578999999999999995
No 220
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=35.81 E-value=20 Score=32.67 Aligned_cols=24 Identities=33% Similarity=0.837 Sum_probs=19.5
Q ss_pred CccccccCCCCCCCCCCCCCCCCC
Q psy16419 123 NVIFFIRCGRGGHWSKECPRAGNF 146 (346)
Q Consensus 123 ~~~~~~~~~~~g~~~~~~~~~~~~ 146 (346)
.+--||+||..|||...||....+
T Consensus 175 pgY~CyRCGqkgHwIqnCpTN~Dp 198 (427)
T COG5222 175 PGYVCYRCGQKGHWIQNCPTNQDP 198 (427)
T ss_pred CceeEEecCCCCchhhcCCCCCCC
Confidence 345899999999999999975443
No 221
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=33.83 E-value=65 Score=25.24 Aligned_cols=40 Identities=5% Similarity=0.239 Sum_probs=22.9
Q ss_pred CCHHHHHHhhcCCCCeEEEEEE-----CCEEEEEecC--HHHHHHHH
Q psy16419 56 TRAPEVRELFVPYGTVVECDIV-----RNYGFVHIDS--PDINKCIK 95 (346)
Q Consensus 56 ~~e~~L~~~F~~~G~v~~~~i~-----~g~afV~f~~--~~a~~Ai~ 95 (346)
.+.++|.+.|+.|..++-..+- .|++.|+|.. .--..|+.
T Consensus 29 ~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 3557899999999887533333 6899999998 44444544
No 222
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=31.21 E-value=64 Score=29.22 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=26.7
Q ss_pred eEEEecCCCCCCHHHHHHHhhcccceEEEEEe
Q psy16419 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV 340 (346)
Q Consensus 309 ~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~ 340 (346)
...|+|||+++|..=|..+++..-.+.+..++
T Consensus 97 ~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 97 YKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 56899999999999999999887776566554
No 223
>KOG2295|consensus
Probab=29.99 E-value=12 Score=36.96 Aligned_cols=61 Identities=16% Similarity=0.243 Sum_probs=49.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECC
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDG 104 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g 104 (346)
.+.||+.|+++.++-.+|..+++.+--+..+.+. ..++.|+|.- -....|+-+||+..+.-
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 5789999999999999999999998766666554 4678999988 77777777788876543
No 224
>KOG4365|consensus
Probab=27.96 E-value=8.5 Score=36.98 Aligned_cols=71 Identities=8% Similarity=-0.077 Sum_probs=58.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecCHHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+++.|+..+|...++.++.-+|..||-|..+... +-.+||+-...++..+|..+....+.|..+++..+..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeeccCcccccCHHHHhhhhhhhhhhhcCch
Confidence 3556788899999999999999999999888766 3467888777888888888888888888888877755
No 225
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=27.03 E-value=1.4e+02 Score=27.46 Aligned_cols=73 Identities=10% Similarity=0.148 Sum_probs=53.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--C-------------CEEEEEecC-HHHHHHHH----HhCC--
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--R-------------NYGFVHIDS-PDINKCIK----ELNG-- 99 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~-------------g~afV~f~~-~~a~~Ai~----~l~g-- 99 (346)
-..+.|...|+..+++-..+-..|-+||+|++|.++ . ....+.|-+ +.|..-.. .|+.
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 446778899999999988999999999999999998 2 457888888 77665432 2222
Q ss_pred cEECCEEEEEEEeec
Q psy16419 100 MMVDGKPMKVVVAGF 114 (346)
Q Consensus 100 ~~~~g~~l~v~~a~~ 114 (346)
+.+.-..|.+.+..-
T Consensus 93 ~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 93 TKLKSESLTLSFVSL 107 (309)
T ss_pred HhcCCcceeEEEEEE
Confidence 245566777777653
No 226
>KOG4019|consensus
Probab=25.24 E-value=51 Score=27.98 Aligned_cols=70 Identities=13% Similarity=0.214 Sum_probs=48.5
Q ss_pred cEEEEcCCCCCCC-----HHHHHHhhcCCCCeEEEEEECCE--EEEEecC-HHHHHHHHHhCCcEECCE-EEEEEEeec
Q psy16419 45 TKVFVGNLSDNTR-----APEVRELFVPYGTVVECDIVRNY--GFVHIDS-PDINKCIKELNGMMVDGK-PMKVVVAGF 114 (346)
Q Consensus 45 ~~lfV~nLp~~~~-----e~~L~~~F~~~G~v~~~~i~~g~--afV~f~~-~~a~~Ai~~l~g~~~~g~-~l~v~~a~~ 114 (346)
+.+.+.+++..+- .....++|.+|-+....++.|+| --|.|.+ +.|..|...++...+.|+ .++.-++.+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 4455666654332 22445667766665555555544 4568999 999999999999999988 788878777
No 227
>KOG4574|consensus
Probab=24.99 E-value=41 Score=35.28 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=31.4
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeC--CeeeEEeecCCC
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVN--EKPLKIEAATSR 37 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~--g~~i~v~~~~~~ 37 (346)
||.|+|.+.+.|-.|+++|+|+++. |-+.+|..++.-
T Consensus 336 ~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 336 MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 7999999999999999999998764 777777776643
No 228
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=24.19 E-value=75 Score=24.79 Aligned_cols=26 Identities=31% Similarity=0.617 Sum_probs=21.7
Q ss_pred CCCCCCHHHHHHHhhcccceEEEEEecc
Q psy16419 315 VNPGTSVELIRPLFEKYGKVVECDVVKN 342 (346)
Q Consensus 315 Lp~~~tee~L~~~F~~~G~I~~v~i~k~ 342 (346)
-|..++.+.|++.| +||+ ..+++++|
T Consensus 59 ~pe~vD~e~v~~~~-PyG~-~~v~vv~G 84 (113)
T PF09585_consen 59 RPEKVDIEAVKAVF-PYGQ-VTVEVVKG 84 (113)
T ss_pred CccccCHHHHHHhC-CCCC-ceEEEEcC
Confidence 36789999999999 8999 77887654
No 229
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=23.93 E-value=3.8e+02 Score=25.94 Aligned_cols=36 Identities=22% Similarity=0.423 Sum_probs=26.8
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHhhcCC----CCeEEEEEE
Q psy16419 42 TPTTKVFVGNLSD-NTRAPEVRELFVPY----GTVVECDIV 77 (346)
Q Consensus 42 ~~~~~lfV~nLp~-~~~e~~L~~~F~~~----G~v~~~~i~ 77 (346)
....+|-|-||.+ .+...+|..+|+.| |++..|.|.
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 4567788889987 46778888888765 667777664
No 230
>TIGR02058 lin0512_fam conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus.
Probab=23.57 E-value=77 Score=24.86 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHhhcccceEEEEEecc
Q psy16419 317 PGTSVELIRPLFEKYGKVVECDVVKN 342 (346)
Q Consensus 317 ~~~tee~L~~~F~~~G~I~~v~i~k~ 342 (346)
..++.+.|++.| +||.+ ++++++|
T Consensus 63 e~vD~e~v~~~~-PyG~~-~v~vv~G 86 (116)
T TIGR02058 63 DQLDEDKVKAII-PYGTV-TVEVEDG 86 (116)
T ss_pred HhcCHHHHHHhC-CCCee-EEEEEcC
Confidence 558999999999 89999 5888654
No 231
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=23.35 E-value=1.1e+02 Score=29.37 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=32.1
Q ss_pred CCCcceEEEecCCC-CCCHHHHHHHhhcc----cceEEEEEe
Q psy16419 304 SVGTFKIFIGNVNP-GTSVELIRPLFEKY----GKVVECDVV 340 (346)
Q Consensus 304 ~~~~~~lfV~nLp~-~~tee~L~~~F~~~----G~I~~v~i~ 340 (346)
-.++.+|-|=||.| .+...+|..+|+.| |+|..|.|.
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 45678999999999 67899999999977 899999985
No 232
>KOG2591|consensus
Probab=23.32 E-value=1.5e+02 Score=29.87 Aligned_cols=38 Identities=18% Similarity=0.468 Sum_probs=32.4
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhc--ccceEEEEEe
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEK--YGKVVECDVV 340 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~--~G~I~~v~i~ 340 (346)
+....+.|.++-||.++-+|+++.||+- +-++++|+..
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa 210 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFA 210 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee
Confidence 4445677999999999999999999974 7899999874
No 233
>smart00343 ZnF_C2HC zinc finger.
Probab=23.21 E-value=49 Score=18.03 Aligned_cols=16 Identities=38% Similarity=1.205 Sum_probs=13.0
Q ss_pred cccCCCCCCCCCCCCC
Q psy16419 127 FIRCGRGGHWSKECPR 142 (346)
Q Consensus 127 ~~~~~~~g~~~~~~~~ 142 (346)
+++++..||+.++|+.
T Consensus 2 C~~CG~~GH~~~~C~~ 17 (26)
T smart00343 2 CYNCGKEGHIARDCPK 17 (26)
T ss_pred CccCCCCCcchhhCCc
Confidence 6788888999888873
No 234
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=23.14 E-value=91 Score=21.61 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=22.9
Q ss_pred CCHHHHHHHhhcccceEEEEEe------cceeeC
Q psy16419 319 TSVELIRPLFEKYGKVVECDVV------KNYGFV 346 (346)
Q Consensus 319 ~tee~L~~~F~~~G~I~~v~i~------k~fgFV 346 (346)
.-|.+|..+|-+--.|+++.|. ||=|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 4477899999999999999875 677776
No 235
>KOG2068|consensus
Probab=21.51 E-value=27 Score=32.51 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=30.4
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 36 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~ 36 (346)
++|.|+.+|+|..||...+|..+.|+.++......
T Consensus 128 ~yITy~~~eda~rci~~v~g~~~dg~~lka~~gtt 162 (327)
T KOG2068|consen 128 VYITYEEEEDADRCIDDVDGFVDDGRALKASLGTT 162 (327)
T ss_pred ccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCC
Confidence 58999999999999999999999999876666553
No 236
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=20.41 E-value=1.1e+02 Score=27.57 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=27.0
Q ss_pred cceEEEecCCCCCCHHHHHHHhh--cccceEEEEEe
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFE--KYGKVVECDVV 340 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~--~~G~I~~v~i~ 340 (346)
..-++|+|||+++++.-|..++. .||.+.-+-++
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~v 132 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMV 132 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEE
T ss_pred CceEEEEEecccchHHHHHHHhhcccccccceEEEE
Confidence 45699999999999999999987 66765555443
Done!