Query psy16419
Match_columns 346
No_of_seqs 382 out of 2228
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 20:49:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16419.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16419hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1.6E-28 5.4E-33 224.4 20.6 107 1-114 59-174 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 3E-28 1E-32 223.4 17.5 105 1-114 83-196 (292)
3 4f02_A Polyadenylate-binding p 99.9 1.3E-25 4.4E-30 196.8 12.9 74 41-114 12-94 (213)
4 3tyt_A Heterogeneous nuclear r 99.9 6.1E-25 2.1E-29 191.3 15.0 72 43-114 3-79 (205)
5 1l3k_A Heterogeneous nuclear r 99.9 1E-24 3.6E-29 187.7 14.8 72 42-114 11-91 (196)
6 1b7f_A Protein (SXL-lethal pro 99.9 3.5E-24 1.2E-28 179.7 16.0 72 43-114 2-82 (168)
7 1fxl_A Paraneoplastic encephal 99.9 4.3E-24 1.5E-28 178.7 15.6 71 44-114 2-81 (167)
8 3pgw_A U1-A; protein-RNA compl 99.9 3.6E-23 1.2E-27 188.6 21.7 73 42-114 7-89 (282)
9 3md3_A Nuclear and cytoplasmic 99.9 6.7E-24 2.3E-28 177.4 14.7 70 45-114 1-78 (166)
10 3sde_A Paraspeckle component 1 99.9 1E-23 3.6E-28 190.3 15.0 73 42-114 20-95 (261)
11 2yh0_A Splicing factor U2AF 65 99.9 8.6E-23 2.9E-27 175.9 17.3 71 43-114 3-87 (198)
12 3nmr_A Cugbp ELAV-like family 99.9 3.5E-23 1.2E-27 174.6 14.3 72 43-114 2-87 (175)
13 2adc_A Polypyrimidine tract-bi 99.9 4.5E-23 1.5E-27 182.5 14.7 73 42-114 32-109 (229)
14 2qfj_A FBP-interacting repress 99.9 3.9E-23 1.3E-27 180.5 13.5 72 43-114 27-107 (216)
15 2g4b_A Splicing factor U2AF 65 99.9 6E-23 2.1E-27 172.9 13.9 71 43-114 3-87 (172)
16 1qm9_A Polypyrimidine tract-bi 99.9 6.1E-23 2.1E-27 177.3 12.9 71 44-114 3-78 (198)
17 2cjk_A Nuclear polyadenylated 99.9 2.8E-23 9.6E-28 174.1 9.0 70 43-114 2-80 (167)
18 3smz_A Protein raver-1, ribonu 99.9 4.6E-22 1.6E-26 181.4 16.3 71 43-114 21-94 (284)
19 3md3_A Nuclear and cytoplasmic 99.9 1.4E-21 4.9E-26 163.1 16.4 113 1-113 43-165 (166)
20 1fje_B Nucleolin RBD12, protei 99.9 2.3E-22 8E-27 170.0 8.2 72 42-114 11-90 (175)
21 2g4b_A Splicing factor U2AF 65 99.9 3E-21 1E-25 162.5 14.9 111 1-113 53-172 (172)
22 4f02_A Polyadenylate-binding p 99.9 1.7E-21 5.7E-26 170.5 13.5 114 1-114 59-180 (213)
23 1b7f_A Protein (SXL-lethal pro 99.9 5.3E-21 1.8E-25 160.2 14.6 111 1-112 47-168 (168)
24 2yh0_A Splicing factor U2AF 65 99.9 6.3E-21 2.2E-25 164.2 15.0 113 1-114 53-193 (198)
25 2ghp_A U4/U6 snRNA-associated 99.9 1.9E-21 6.4E-26 178.1 12.2 71 41-112 38-115 (292)
26 1fje_B Nucleolin RBD12, protei 99.9 6.6E-21 2.2E-25 161.0 13.9 112 1-114 56-173 (175)
27 1fxl_A Paraneoplastic encephal 99.8 1.2E-20 4.2E-25 157.6 13.7 111 1-112 46-167 (167)
28 4f25_A Polyadenylate-binding p 99.8 3.9E-21 1.3E-25 151.7 9.7 71 44-114 5-82 (115)
29 2i2y_A Fusion protein consists 99.8 2.3E-21 7.8E-26 160.3 8.6 112 2-114 16-147 (150)
30 3pgw_A U1-A; protein-RNA compl 99.8 2.4E-20 8.3E-25 169.8 15.6 113 1-113 54-281 (282)
31 2qfj_A FBP-interacting repress 99.8 9E-21 3.1E-25 165.5 11.8 114 1-114 72-204 (216)
32 1l3k_A Heterogeneous nuclear r 99.8 4.3E-20 1.5E-24 158.7 14.7 114 1-116 57-184 (196)
33 2adc_A Polypyrimidine tract-bi 99.8 3.4E-20 1.2E-24 164.0 14.0 114 1-114 74-227 (229)
34 3tyt_A Heterogeneous nuclear r 99.8 2.5E-20 8.5E-25 162.1 12.5 112 1-112 44-204 (205)
35 3nmr_A Cugbp ELAV-like family 99.8 2.6E-20 8.7E-25 157.0 12.0 113 1-113 49-175 (175)
36 1qm9_A Polypyrimidine tract-bi 99.8 2.2E-20 7.4E-25 161.2 11.0 114 1-114 43-196 (198)
37 2kn4_A Immunoglobulin G-bindin 99.8 1.3E-19 4.5E-24 150.8 11.7 113 2-114 16-149 (158)
38 2cjk_A Nuclear polyadenylated 99.8 3.9E-20 1.3E-24 154.9 5.7 110 1-114 47-165 (167)
39 4fxv_A ELAV-like protein 1; RN 99.8 1.3E-18 4.3E-23 133.4 10.5 73 42-114 17-98 (99)
40 3sde_A Paraspeckle component 1 99.8 2.6E-18 8.9E-23 154.8 13.5 107 1-114 60-178 (261)
41 1rk8_A CG8781-PA, CG8781-PA pr 99.7 7.7E-18 2.6E-22 141.3 11.0 111 4-114 11-151 (165)
42 2dgt_A RNA-binding protein 30; 99.7 1.8E-17 6.3E-22 125.0 11.8 75 41-115 7-82 (92)
43 2dnq_A RNA-binding protein 4B; 99.7 1.8E-17 6.3E-22 124.5 10.5 75 42-116 6-81 (90)
44 2dgu_A Heterogeneous nuclear r 99.7 2.4E-17 8.2E-22 127.1 11.3 75 42-116 9-84 (103)
45 2wbr_A GW182, gawky, LD47780P; 99.7 1.4E-17 4.8E-22 122.6 8.9 72 43-114 6-80 (89)
46 1x4c_A Splicing factor, argini 99.7 5.3E-17 1.8E-21 126.3 12.5 75 42-116 13-94 (108)
47 2dnp_A RNA-binding protein 14; 99.7 2.5E-17 8.5E-22 123.8 10.2 74 41-114 6-80 (90)
48 2lea_A Serine/arginine-rich sp 99.7 2.2E-18 7.5E-23 139.7 4.3 111 2-114 7-126 (135)
49 1x4d_A Matrin 3; structural ge 99.7 1.9E-17 6.4E-22 127.1 9.2 75 40-114 11-91 (102)
50 1wf1_A RNA-binding protein RAL 99.7 2.7E-17 9.1E-22 128.4 10.3 90 25-114 6-99 (110)
51 3lqv_A PRE-mRNA branch site pr 99.7 9.2E-18 3.2E-22 132.1 7.6 73 42-114 6-84 (115)
52 2cpd_A Apobec-1 stimulating pr 99.7 7.7E-17 2.6E-21 123.3 12.6 75 42-116 13-90 (99)
53 1sjq_A Polypyrimidine tract-bi 99.7 1.5E-17 5.2E-22 127.9 7.9 73 42-114 14-91 (105)
54 3s8s_A Histone-lysine N-methyl 99.7 4.8E-17 1.6E-21 127.0 10.5 73 42-114 4-85 (110)
55 2xnq_A Nuclear polyadenylated 99.7 5.6E-17 1.9E-21 123.7 10.6 73 42-114 20-94 (97)
56 3r27_A HnRNP L, heterogeneous 99.7 3.8E-17 1.3E-21 124.4 9.4 73 42-114 19-96 (100)
57 1x4a_A Splicing factor, argini 99.7 8.9E-17 3E-21 125.2 11.7 75 41-115 19-99 (109)
58 2dnz_A Probable RNA-binding pr 99.7 7.1E-17 2.4E-21 122.4 10.7 75 42-116 3-86 (95)
59 2cq0_A Eukaryotic translation 99.7 1.2E-16 4E-21 123.2 11.9 75 41-115 12-95 (103)
60 2cq1_A PTB-like protein L; RRM 99.7 1.3E-16 4.5E-21 122.4 11.9 74 41-114 12-90 (101)
61 2kvi_A Nuclear polyadenylated 99.7 2.6E-17 9E-22 125.2 7.9 76 42-117 8-85 (96)
62 2cqi_A Nucleolysin TIAR; RNA r 99.7 2E-16 6.9E-21 121.8 12.4 74 41-114 12-92 (103)
63 1whw_A Hypothetical protein ri 99.7 1.5E-16 5.3E-21 121.5 11.2 75 42-116 6-89 (99)
64 2cq3_A RNA-binding protein 9; 99.7 3.6E-16 1.2E-20 120.4 13.3 75 40-114 11-92 (103)
65 2dgx_A KIAA0430 protein; RRM d 99.7 1.4E-16 4.8E-21 121.2 10.5 74 41-114 6-89 (96)
66 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.3E-16 4.3E-21 118.9 9.9 73 42-114 4-85 (87)
67 1x5t_A Splicing factor 3B subu 99.7 8.2E-17 2.8E-21 122.3 9.0 74 42-115 3-86 (96)
68 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.5E-16 5.2E-21 117.9 10.1 72 42-113 5-85 (85)
69 3md1_A Nuclear and cytoplasmic 99.7 1.8E-16 6.2E-21 117.0 10.2 71 44-114 1-80 (83)
70 2d9p_A Polyadenylate-binding p 99.7 1.8E-16 6.2E-21 122.1 10.6 75 41-115 12-93 (103)
71 2jvo_A Nucleolar protein 3; nu 99.7 1.3E-16 4.4E-21 124.2 9.8 74 41-114 28-102 (108)
72 2ytc_A PRE-mRNA-splicing facto 99.7 1.9E-16 6.5E-21 117.5 10.3 72 42-113 10-85 (85)
73 2cpj_A Non-POU domain-containi 99.7 2E-16 6.8E-21 121.0 10.7 74 41-114 12-88 (99)
74 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.6E-16 5.3E-21 122.2 10.0 74 42-115 10-92 (102)
75 2fy1_A RNA-binding motif prote 99.7 1.6E-16 5.4E-21 125.3 10.3 75 42-116 5-87 (116)
76 1x5u_A Splicing factor 3B subu 99.7 1.6E-16 5.3E-21 122.8 10.1 76 41-116 12-96 (105)
77 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.2E-16 7.4E-21 131.1 11.3 77 42-118 37-122 (156)
78 2do4_A Squamous cell carcinoma 99.7 3E-16 1E-20 120.2 11.3 74 41-114 14-95 (100)
79 2dgo_A Cytotoxic granule-assoc 99.7 6E-16 2E-20 121.6 13.2 76 40-115 11-95 (115)
80 1wex_A Hypothetical protein (r 99.7 2.1E-16 7.3E-21 121.9 10.3 74 42-115 13-91 (104)
81 2dgs_A DAZ-associated protein 99.7 3.2E-16 1.1E-20 119.8 11.2 73 42-115 8-89 (99)
82 1why_A Hypothetical protein ri 99.7 1.6E-16 5.4E-21 121.0 9.4 73 42-114 15-92 (97)
83 2dnm_A SRP46 splicing factor; 99.7 2E-16 6.7E-21 121.9 9.9 73 42-114 11-92 (103)
84 2cqh_A IGF-II mRNA-binding pro 99.7 1.3E-16 4.3E-21 120.6 8.5 73 42-114 6-82 (93)
85 2dnh_A Bruno-like 5, RNA bindi 99.7 3.2E-16 1.1E-20 121.1 11.0 74 41-114 12-96 (105)
86 2e5h_A Zinc finger CCHC-type a 99.7 3.4E-16 1.2E-20 118.3 10.9 72 42-113 14-94 (94)
87 2cqc_A Arginine/serine-rich sp 99.7 2.7E-16 9.1E-21 119.1 10.1 74 41-114 12-94 (95)
88 2ad9_A Polypyrimidine tract-bi 99.7 9.7E-17 3.3E-21 126.4 7.8 73 42-114 29-106 (119)
89 1u6f_A Tcubp1, RNA-binding pro 99.7 3.1E-16 1.1E-20 127.5 11.1 76 42-117 40-124 (139)
90 1x5s_A Cold-inducible RNA-bind 99.7 1.8E-16 6.2E-21 121.8 9.1 75 42-116 10-93 (102)
91 2cpz_A CUG triplet repeat RNA- 99.7 2.5E-16 8.5E-21 123.8 10.1 75 41-115 22-105 (115)
92 2lxi_A RNA-binding protein 10; 99.7 3.7E-17 1.3E-21 123.2 5.0 71 44-114 1-82 (91)
93 1x4g_A Nucleolysin TIAR; struc 99.7 3.3E-16 1.1E-20 121.9 10.6 73 42-114 23-98 (109)
94 2x1f_A MRNA 3'-END-processing 99.7 2.7E-16 9.2E-21 119.5 9.7 72 43-114 1-81 (96)
95 2cpf_A RNA binding motif prote 99.7 3.8E-16 1.3E-20 119.1 10.6 74 42-115 3-88 (98)
96 2cqd_A RNA-binding region cont 99.7 6.7E-16 2.3E-20 121.6 12.1 75 41-116 14-97 (116)
97 1oo0_B CG8781-PA, drosophila Y 99.7 3.8E-16 1.3E-20 121.8 10.4 73 42-114 24-105 (110)
98 4a8x_A RNA-binding protein wit 99.7 5E-16 1.7E-20 115.9 10.7 72 43-114 3-84 (88)
99 2dng_A Eukaryotic translation 99.7 7.4E-16 2.5E-20 118.7 11.9 74 40-115 11-93 (103)
100 2lkz_A RNA-binding protein 5; 99.7 1.4E-16 4.9E-21 120.8 7.7 73 42-114 7-94 (95)
101 2dgv_A HnRNP M, heterogeneous 99.7 2.8E-16 9.4E-21 118.4 9.2 73 42-114 6-85 (92)
102 2khc_A Testis-specific RNP-typ 99.7 5.2E-16 1.8E-20 122.5 10.5 73 41-113 37-118 (118)
103 2jvr_A Nucleolar protein 3; RN 99.7 1.7E-16 5.8E-21 123.8 7.5 73 42-114 26-104 (111)
104 1x4f_A Matrin 3; structural ge 99.7 1.5E-16 5.2E-21 123.9 7.1 74 42-115 23-102 (112)
105 2err_A Ataxin-2-binding protei 99.7 3.9E-16 1.3E-20 121.6 9.5 74 41-114 26-106 (109)
106 2ywk_A Putative RNA-binding pr 99.7 4.1E-16 1.4E-20 118.2 9.4 73 42-114 14-94 (95)
107 1wi8_A EIF-4B, eukaryotic tran 99.7 8E-16 2.7E-20 118.7 11.2 74 40-115 11-94 (104)
108 2la4_A Nuclear and cytoplasmic 99.7 2.2E-16 7.4E-21 121.2 7.8 73 42-114 25-100 (101)
109 1x4h_A RNA-binding protein 28; 99.7 7.5E-16 2.6E-20 120.2 11.0 74 42-115 13-101 (111)
110 1p27_B RNA-binding protein 8A; 99.6 3.9E-16 1.3E-20 120.8 9.2 73 42-114 21-102 (106)
111 3ex7_B RNA-binding protein 8A; 99.6 3.6E-16 1.2E-20 125.0 9.2 76 41-116 19-103 (126)
112 2cpi_A CCR4-NOT transcription 99.6 7.7E-16 2.6E-20 120.3 10.6 73 42-114 13-100 (111)
113 1x5p_A Negative elongation fac 99.6 2.4E-15 8.3E-20 114.5 13.1 72 41-114 12-86 (97)
114 2do0_A HnRNP M, heterogeneous 99.6 1.9E-15 6.6E-20 118.4 12.8 73 42-114 13-93 (114)
115 2cpe_A RNA-binding protein EWS 99.6 7.5E-16 2.6E-20 120.6 10.3 75 41-115 12-103 (113)
116 3ulh_A THO complex subunit 4; 99.6 1E-15 3.5E-20 118.6 10.8 73 41-113 26-106 (107)
117 3beg_B Splicing factor, argini 99.6 2.7E-16 9.1E-21 123.8 7.5 73 42-114 14-93 (115)
118 2cph_A RNA binding motif prote 99.6 8.5E-16 2.9E-20 119.0 10.2 74 41-114 12-96 (107)
119 2jrs_A RNA-binding protein 39; 99.6 6E-16 2.1E-20 120.3 9.3 75 40-114 22-105 (108)
120 2dgp_A Bruno-like 4, RNA bindi 99.6 4.6E-16 1.6E-20 120.4 8.5 76 40-115 9-96 (106)
121 1whx_A Hypothetical protein ri 99.6 3.4E-16 1.1E-20 122.4 7.8 72 43-114 9-83 (111)
122 2div_A TRNA selenocysteine ass 99.6 4.1E-16 1.4E-20 119.2 8.1 73 42-114 7-93 (99)
123 3s7r_A Heterogeneous nuclear r 99.6 1.8E-15 6E-20 112.7 11.0 70 42-112 9-87 (87)
124 2la6_A RNA-binding protein FUS 99.6 7.5E-16 2.5E-20 117.8 9.0 73 41-113 10-99 (99)
125 3ns6_A Eukaryotic translation 99.6 1.8E-16 6.3E-21 121.5 5.6 73 42-114 4-92 (100)
126 3ucg_A Polyadenylate-binding p 99.6 1.1E-15 3.7E-20 114.3 9.6 70 44-114 6-84 (89)
127 2fc9_A NCL protein; structure 99.6 2E-15 6.9E-20 115.7 11.2 75 41-115 12-91 (101)
128 2fc8_A NCL protein; structure 99.6 1.6E-15 5.6E-20 116.4 10.3 77 40-116 11-93 (102)
129 2dh8_A DAZ-associated protein 99.6 1.1E-15 3.6E-20 118.2 9.3 74 41-115 13-95 (105)
130 2hvz_A Splicing factor, argini 99.6 3E-16 1E-20 120.4 6.1 72 45-116 1-76 (101)
131 1nu4_A U1A RNA binding domain; 99.6 1.1E-15 3.8E-20 116.2 9.2 73 42-114 6-88 (97)
132 2e5j_A Methenyltetrahydrofolat 99.6 6.3E-16 2.1E-20 117.7 7.7 72 42-114 17-93 (97)
133 1s79_A Lupus LA protein; RRM, 99.6 4.1E-16 1.4E-20 120.2 6.7 72 42-114 9-88 (103)
134 3p5t_L Cleavage and polyadenyl 99.6 1.2E-16 4.2E-21 120.0 3.4 70 45-114 2-82 (90)
135 2a3j_A U1 small nuclear ribonu 99.6 7.5E-16 2.6E-20 123.2 7.9 73 42-114 27-109 (127)
136 3n9u_C Cleavage and polyadenyl 99.6 1.2E-15 4E-20 126.6 9.3 72 43-114 54-136 (156)
137 2dhg_A TRNA selenocysteine ass 99.6 7.2E-16 2.5E-20 118.9 7.4 75 41-115 6-90 (104)
138 1x4b_A Heterogeneous nuclear r 99.6 1.6E-15 5.4E-20 119.4 9.6 73 43-116 26-107 (116)
139 1fjc_A Nucleolin RBD2, protein 99.6 1.1E-15 3.9E-20 116.0 8.4 76 41-116 13-92 (96)
140 2cqp_A RNA-binding protein 12; 99.6 1E-15 3.5E-20 116.7 8.1 73 42-114 13-94 (98)
141 1x4e_A RNA binding motif, sing 99.6 3E-16 1E-20 116.4 4.8 72 42-113 3-83 (85)
142 2cpx_A Hypothetical protein FL 99.6 7.5E-16 2.6E-20 121.0 7.4 74 42-115 23-105 (115)
143 2cq2_A Hypothetical protein LO 99.6 8.9E-16 3.1E-20 119.7 7.7 73 42-114 23-105 (114)
144 2cq4_A RNA binding motif prote 99.6 1.7E-15 6E-20 118.8 9.3 71 43-114 24-103 (114)
145 2nlw_A Eukaryotic translation 99.6 1.3E-15 4.4E-20 117.8 8.4 73 42-114 13-99 (105)
146 2kxn_B Transformer-2 protein h 99.6 9.3E-16 3.2E-20 123.2 7.7 74 41-114 43-125 (129)
147 1wg1_A KIAA1579 protein, homol 99.6 1.8E-15 6.1E-20 113.1 8.7 72 42-114 3-77 (88)
148 2ek1_A RNA-binding protein 12; 99.6 7E-16 2.4E-20 116.9 6.5 73 42-114 13-94 (95)
149 3zzy_A Polypyrimidine tract-bi 99.6 3.1E-15 1.1E-19 119.3 10.2 73 42-114 26-105 (130)
150 2cqg_A TDP-43, TAR DNA-binding 99.6 6.6E-15 2.3E-19 113.2 11.7 73 41-115 12-93 (103)
151 2kt5_A RNA and export factor-b 99.6 3.2E-15 1.1E-19 119.1 10.2 74 41-114 32-113 (124)
152 1wez_A HnRNP H', FTP-3, hetero 99.6 2.3E-15 8E-20 115.7 8.9 72 42-115 13-92 (102)
153 2dgw_A Probable RNA-binding pr 99.6 5.5E-15 1.9E-19 111.0 10.8 71 42-114 8-86 (91)
154 3pgw_S U1-70K; protein-RNA com 99.6 1.3E-15 4.3E-20 146.7 8.8 74 42-115 100-182 (437)
155 2jwn_A Embryonic polyadenylate 99.6 2.9E-15 1E-19 119.2 9.3 71 43-114 35-114 (124)
156 2rs2_A Musashi-1, RNA-binding 99.6 4.2E-15 1.5E-19 115.7 9.8 72 42-114 23-103 (109)
157 1x5o_A RNA binding motif, sing 99.6 5.7E-15 2E-19 115.8 10.1 73 42-114 23-111 (114)
158 2krb_A Eukaryotic translation 99.6 8.6E-16 2.9E-20 112.9 4.7 66 44-109 1-80 (81)
159 1p1t_A Cleavage stimulation fa 99.6 1.3E-15 4.6E-20 117.3 5.9 72 43-114 7-87 (104)
160 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 6.1E-15 2.1E-19 119.8 10.1 72 41-112 60-140 (140)
161 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.2E-15 4E-20 110.9 5.2 67 45-112 1-76 (77)
162 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.5E-15 5.2E-20 116.3 6.1 71 42-114 17-97 (100)
163 2mss_A Protein (musashi1); RNA 99.6 7.9E-16 2.7E-20 111.3 4.0 66 46-112 1-75 (75)
164 2lcw_A RNA-binding protein FUS 99.4 1.6E-16 5.6E-21 125.1 0.0 75 42-116 5-96 (116)
165 2e5g_A U6 snRNA-specific termi 99.6 1E-14 3.5E-19 110.3 9.8 72 42-114 6-81 (94)
166 1sjr_A Polypyrimidine tract-bi 99.6 4E-15 1.4E-19 123.1 8.0 73 42-114 44-123 (164)
167 2cpy_A RNA-binding protein 12; 99.6 5.2E-15 1.8E-19 116.1 8.3 73 41-114 12-93 (114)
168 2db1_A Heterogeneous nuclear r 99.6 5.1E-15 1.8E-19 116.9 8.3 72 42-114 15-97 (118)
169 2e5i_A Heterogeneous nuclear r 99.6 7.4E-15 2.5E-19 116.5 9.1 71 44-114 25-101 (124)
170 2dis_A Unnamed protein product 99.6 3.6E-15 1.2E-19 115.9 6.9 73 42-114 6-91 (109)
171 2hzc_A Splicing factor U2AF 65 99.6 5.9E-15 2E-19 109.7 7.6 69 42-111 4-86 (87)
172 2ki2_A SS-DNA binding protein 99.6 7.6E-16 2.6E-20 115.5 2.4 69 45-114 2-79 (90)
173 1wg5_A Heterogeneous nuclear r 99.6 8.1E-15 2.8E-19 113.1 8.2 72 42-114 13-93 (104)
174 2hgn_A Heterogeneous nuclear r 99.6 8.8E-16 3E-20 124.6 2.7 111 2-115 4-123 (139)
175 1wel_A RNA-binding protein 12; 99.6 2.4E-15 8.3E-20 119.8 5.1 72 42-114 23-103 (124)
176 1fj7_A Nucleolin RBD1, protein 99.6 1.1E-15 3.6E-20 117.3 2.9 73 42-115 15-95 (101)
177 3d2w_A TAR DNA-binding protein 99.6 1.6E-14 5.5E-19 108.1 9.2 69 42-114 9-83 (89)
178 2e44_A Insulin-like growth fac 99.5 7.2E-15 2.5E-19 111.5 7.3 73 42-114 13-91 (96)
179 2hgl_A HNRPF protein, heteroge 99.5 4.6E-15 1.6E-19 119.9 6.6 72 42-114 42-124 (136)
180 2dnn_A RNA-binding protein 12; 99.5 1.5E-14 5.1E-19 112.4 9.1 70 43-114 15-92 (109)
181 3q2s_C Cleavage and polyadenyl 99.5 5.6E-15 1.9E-19 130.3 7.3 72 43-114 67-149 (229)
182 2diu_A KIAA0430 protein; struc 99.5 9.4E-15 3.2E-19 108.6 6.9 69 44-114 9-83 (96)
183 2m2b_A RNA-binding protein 10; 99.5 3.8E-15 1.3E-19 119.9 5.2 74 42-115 21-108 (131)
184 2bz2_A Negative elongation fac 99.5 1.6E-14 5.5E-19 114.5 8.3 72 41-114 36-110 (121)
185 1wf0_A TDP-43, TAR DNA-binding 99.5 8.8E-15 3E-19 109.2 6.4 72 42-115 3-78 (88)
186 2voo_A Lupus LA protein; RNA-b 99.5 5.3E-14 1.8E-18 120.8 11.9 106 8-114 63-186 (193)
187 3egn_A RNA-binding protein 40; 99.5 1.3E-14 4.4E-19 118.5 7.4 74 41-114 42-129 (143)
188 2lmi_A GRSF-1, G-rich sequence 99.5 5.9E-15 2E-19 114.5 4.2 72 42-114 9-91 (107)
189 1iqt_A AUF1, heterogeneous nuc 99.5 4E-15 1.4E-19 107.5 2.9 66 46-112 1-75 (75)
190 2xs2_A Deleted in azoospermia- 99.5 2E-14 6.9E-19 110.3 7.0 71 42-114 7-85 (102)
191 2i2y_A Fusion protein consists 99.5 7.7E-15 2.6E-19 120.8 4.8 41 306-346 72-115 (150)
192 2f3j_A RNA and export factor b 99.5 2.4E-14 8.2E-19 121.2 7.8 73 42-114 86-166 (177)
193 3u1l_A PRE-mRNA-splicing facto 99.5 3.6E-14 1.2E-18 125.0 7.2 73 42-114 132-228 (240)
194 2dha_A FLJ20171 protein; RRM d 99.5 2.8E-14 9.7E-19 113.3 5.1 72 42-114 21-104 (123)
195 2hgm_A HNRPF protein, heteroge 99.5 7.1E-14 2.4E-18 111.3 7.2 71 42-114 40-120 (126)
196 2kn4_A Immunoglobulin G-bindin 99.4 1.5E-13 5.1E-18 114.0 8.0 41 306-346 69-117 (158)
197 2pe8_A Splicing factor 45; RRM 99.4 7.8E-13 2.7E-17 102.0 9.9 73 42-114 6-93 (105)
198 2j8a_A Histone-lysine N-methyl 99.4 4E-13 1.4E-17 105.5 8.1 70 45-114 3-95 (136)
199 2dit_A HIV TAT specific factor 99.4 1.4E-12 4.9E-17 101.8 11.2 73 42-114 13-101 (112)
200 2dnl_A Cytoplasmic polyadenyla 99.4 7.6E-13 2.6E-17 103.6 7.7 70 42-114 6-87 (114)
201 1sjq_A Polypyrimidine tract-bi 99.3 1.3E-12 4.3E-17 100.3 5.2 42 305-346 14-57 (105)
202 3tht_A Alkylated DNA repair pr 99.3 6.2E-12 2.1E-16 116.5 8.7 73 41-113 15-97 (345)
203 3v4m_A Splicing factor U2AF 65 99.3 9.8E-12 3.4E-16 95.8 8.3 73 42-114 3-96 (105)
204 3d2w_A TAR DNA-binding protein 99.3 2.4E-12 8.3E-17 96.1 4.7 42 305-346 9-53 (89)
205 3r27_A HnRNP L, heterogeneous 99.3 4.9E-12 1.7E-16 96.1 6.1 43 304-346 18-62 (100)
206 2ad9_A Polypyrimidine tract-bi 99.3 5.5E-12 1.9E-16 99.1 6.1 44 303-346 27-72 (119)
207 2cq1_A PTB-like protein L; RRM 99.3 8.1E-12 2.8E-16 95.5 6.5 44 303-346 11-56 (101)
208 1x4d_A Matrin 3; structural ge 99.2 5.8E-12 2E-16 96.4 4.8 43 304-346 12-57 (102)
209 2d9o_A DNAJ (HSP40) homolog, s 99.2 2.5E-11 8.4E-16 92.5 8.0 59 54-114 27-89 (100)
210 1jmt_A Splicing factor U2AF 35 99.2 2.9E-12 9.8E-17 98.7 2.7 64 49-112 20-103 (104)
211 4fxv_A ELAV-like protein 1; RN 99.2 1.1E-11 3.9E-16 94.4 5.5 40 307-346 19-66 (99)
212 1wex_A Hypothetical protein (r 99.2 2E-11 6.9E-16 93.9 6.9 43 304-346 12-56 (104)
213 2dnq_A RNA-binding protein 4B; 99.2 1.7E-11 5.8E-16 91.5 5.9 42 305-346 6-47 (90)
214 3ue2_A Poly(U)-binding-splicin 99.2 8.8E-11 3E-15 92.3 9.6 72 43-114 19-108 (118)
215 2dgt_A RNA-binding protein 30; 99.2 1.9E-11 6.4E-16 91.7 5.4 43 304-346 7-49 (92)
216 4f25_A Polyadenylate-binding p 99.2 1.9E-11 6.5E-16 95.8 5.4 40 307-346 5-50 (115)
217 2dnp_A RNA-binding protein 14; 99.2 1.9E-11 6.4E-16 91.3 5.1 42 305-346 7-48 (90)
218 3s6e_A RNA-binding protein 39; 99.2 1E-10 3.6E-15 91.2 9.3 73 42-114 5-92 (114)
219 1x4f_A Matrin 3; structural ge 99.2 1.9E-11 6.6E-16 94.9 4.7 43 304-346 22-67 (112)
220 3s8s_A Histone-lysine N-methyl 99.2 3.5E-11 1.2E-15 93.5 5.8 42 305-346 4-53 (110)
221 2kvi_A Nuclear polyadenylated 99.2 2.6E-11 9E-16 91.7 4.9 42 305-346 8-50 (96)
222 2dgu_A Heterogeneous nuclear r 99.2 3.2E-11 1.1E-15 92.4 5.4 42 305-346 9-50 (103)
223 2xnq_A Nuclear polyadenylated 99.1 3.6E-11 1.2E-15 91.2 5.7 44 303-346 18-62 (97)
224 1wf0_A TDP-43, TAR DNA-binding 99.1 1.9E-11 6.5E-16 90.9 4.0 41 306-346 4-47 (88)
225 2wbr_A GW182, gawky, LD47780P; 99.1 3.4E-11 1.2E-15 88.5 5.1 40 307-346 7-48 (89)
226 2jvo_A Nucleolar protein 3; nu 99.1 3.5E-11 1.2E-15 93.2 5.1 44 303-346 27-70 (108)
227 1s79_A Lupus LA protein; RRM, 99.1 5E-11 1.7E-15 91.5 5.3 41 306-346 10-57 (103)
228 2cpd_A Apobec-1 stimulating pr 99.1 1.1E-10 3.6E-15 88.8 6.6 43 304-346 12-56 (99)
229 1wf1_A RNA-binding protein RAL 99.1 1.1E-10 3.8E-15 90.5 6.5 44 303-346 23-67 (110)
230 3s7r_A Heterogeneous nuclear r 99.1 9.8E-11 3.4E-15 86.7 5.9 42 305-346 9-58 (87)
231 2dnr_A Synaptojanin-1; RRM dom 99.1 2.3E-10 7.9E-15 84.2 7.5 72 42-114 5-85 (91)
232 1x4c_A Splicing factor, argini 99.1 1.1E-10 3.9E-15 90.2 6.0 41 306-346 14-55 (108)
233 2cq3_A RNA-binding protein 9; 99.1 1.9E-10 6.6E-15 88.0 7.0 44 303-346 11-60 (103)
234 2dnh_A Bruno-like 5, RNA bindi 99.1 1.9E-10 6.4E-15 88.3 6.8 42 305-346 13-61 (105)
235 1x4e_A RNA binding motif, sing 99.1 1.1E-10 3.7E-15 86.0 5.1 42 305-346 3-52 (85)
236 2lxi_A RNA-binding protein 10; 99.1 2.2E-11 7.7E-16 91.2 1.1 39 308-346 2-49 (91)
237 2dgx_A KIAA0430 protein; RRM d 99.1 1.2E-10 4.1E-15 88.1 5.1 42 305-346 7-57 (96)
238 2d9p_A Polyadenylate-binding p 99.1 1.8E-10 6.1E-15 88.1 6.1 44 303-346 11-60 (103)
239 1rk8_A CG8781-PA, CG8781-PA pr 99.1 1.5E-10 5E-15 96.7 6.0 42 305-346 70-119 (165)
240 2khc_A Testis-specific RNP-typ 99.1 9.2E-10 3.1E-14 86.3 10.2 43 304-346 37-87 (118)
241 2ytc_A PRE-mRNA-splicing facto 99.1 2.5E-10 8.5E-15 84.0 6.4 42 305-346 10-53 (85)
242 2cq2_A Hypothetical protein LO 99.0 7.2E-11 2.5E-15 91.8 3.4 44 303-346 21-68 (114)
243 2lkz_A RNA-binding protein 5; 99.0 8.6E-11 3E-15 88.7 3.6 40 307-346 9-58 (95)
244 3md1_A Nuclear and cytoplasmic 99.0 1.9E-10 6.3E-15 84.3 5.3 40 307-346 1-48 (83)
245 2dgs_A DAZ-associated protein 99.0 2.7E-10 9.3E-15 86.4 6.3 42 305-346 8-57 (99)
246 1x4a_A Splicing factor, argini 99.0 3.1E-10 1E-14 87.8 6.5 44 303-346 18-66 (109)
247 1x4h_A RNA-binding protein 28; 99.0 2.4E-10 8.3E-15 88.5 5.9 43 304-346 12-62 (111)
248 2err_A Ataxin-2-binding protei 99.0 1.7E-10 6E-15 89.3 4.9 44 303-346 25-74 (109)
249 3mdf_A Peptidyl-prolyl CIS-tra 99.0 2.5E-10 8.6E-15 84.0 5.5 42 305-346 5-54 (85)
250 2cpj_A Non-POU domain-containi 99.0 2.9E-10 1E-14 86.3 6.0 43 304-346 12-56 (99)
251 2cqi_A Nucleolysin TIAR; RNA r 99.0 3.3E-10 1.1E-14 86.7 6.2 44 303-346 11-60 (103)
252 1p27_B RNA-binding protein 8A; 99.0 2.8E-10 9.7E-15 87.4 5.8 44 303-346 19-70 (106)
253 4a8x_A RNA-binding protein wit 99.0 2.6E-10 9E-15 84.4 5.3 40 307-346 4-52 (88)
254 2e5h_A Zinc finger CCHC-type a 99.0 3.7E-10 1.3E-14 84.8 6.1 44 303-346 12-63 (94)
255 2rs2_A Musashi-1, RNA-binding 99.0 2E-10 6.8E-15 89.0 4.7 43 304-346 22-72 (109)
256 1x5u_A Splicing factor 3B subu 99.0 3.3E-10 1.1E-14 86.9 6.0 44 303-346 11-62 (105)
257 2cpf_A RNA binding motif prote 99.0 2.9E-10 1E-14 86.1 5.5 41 306-346 4-55 (98)
258 2cqc_A Arginine/serine-rich sp 99.0 3.9E-10 1.3E-14 84.8 6.1 44 303-346 11-62 (95)
259 2x1f_A MRNA 3'-END-processing 99.0 2.3E-10 7.8E-15 86.4 4.8 41 306-346 1-49 (96)
260 2cpz_A CUG triplet repeat RNA- 99.0 3.1E-10 1.1E-14 88.7 5.6 44 303-346 21-72 (115)
261 2dgp_A Bruno-like 4, RNA bindi 99.0 2.1E-10 7.2E-15 88.2 4.6 44 303-346 9-60 (106)
262 2m2b_A RNA-binding protein 10; 99.0 1.6E-10 5.6E-15 92.5 4.0 43 304-346 20-72 (131)
263 2jvr_A Nucleolar protein 3; RN 99.0 1.3E-10 4.5E-15 90.3 3.3 41 306-346 27-72 (111)
264 2do4_A Squamous cell carcinoma 99.0 5.3E-10 1.8E-14 85.0 6.6 44 303-346 13-63 (100)
265 2la4_A Nuclear and cytoplasmic 99.0 2.9E-10 9.8E-15 86.6 5.1 41 306-346 26-68 (101)
266 1why_A Hypothetical protein ri 99.0 4.8E-10 1.6E-14 84.8 6.2 43 304-346 14-58 (97)
267 3ulh_A THO complex subunit 4; 99.0 4.1E-10 1.4E-14 86.7 5.8 43 304-346 26-75 (107)
268 1whw_A Hypothetical protein ri 99.0 3.3E-10 1.1E-14 86.0 5.1 42 305-346 6-55 (99)
269 2nlw_A Eukaryotic translation 99.0 3.5E-10 1.2E-14 86.9 5.4 42 305-346 13-66 (105)
270 2cqg_A TDP-43, TAR DNA-binding 99.0 5.9E-10 2E-14 85.2 6.6 44 303-346 11-62 (103)
271 2jrs_A RNA-binding protein 39; 99.0 5.3E-10 1.8E-14 86.4 6.4 44 303-346 22-73 (108)
272 3beg_B Splicing factor, argini 99.0 2E-10 6.9E-15 89.9 4.0 40 307-346 16-56 (115)
273 2dgv_A HnRNP M, heterogeneous 99.0 4.3E-10 1.5E-14 84.0 5.7 42 305-346 6-53 (92)
274 2div_A TRNA selenocysteine ass 99.0 3E-10 1E-14 86.1 4.9 42 305-346 7-57 (99)
275 2dnm_A SRP46 splicing factor; 99.0 4.7E-10 1.6E-14 85.7 5.9 43 304-346 10-60 (103)
276 3bs9_A Nucleolysin TIA-1 isofo 99.0 4.1E-10 1.4E-14 83.2 5.3 42 305-346 4-53 (87)
277 2krb_A Eukaryotic translation 99.0 2.5E-10 8.4E-15 83.4 3.9 39 308-346 2-52 (81)
278 2la6_A RNA-binding protein FUS 99.0 5.9E-10 2E-14 84.6 6.2 44 303-346 9-68 (99)
279 1oo0_B CG8781-PA, drosophila Y 99.0 3.9E-10 1.3E-14 87.3 5.1 44 303-346 22-73 (110)
280 2dnz_A Probable RNA-binding pr 99.0 6.2E-10 2.1E-14 83.7 6.0 42 305-346 3-52 (95)
281 1x4g_A Nucleolysin TIAR; struc 99.0 4.3E-10 1.5E-14 87.0 5.2 41 306-346 24-66 (109)
282 2dh8_A DAZ-associated protein 99.0 5.1E-10 1.7E-14 85.9 5.5 44 303-346 12-63 (105)
283 1wi8_A EIF-4B, eukaryotic tran 99.0 5.5E-10 1.9E-14 85.6 5.6 43 303-346 11-62 (104)
284 2dhg_A TRNA selenocysteine ass 99.0 5.9E-10 2E-14 85.3 5.7 42 305-346 7-56 (104)
285 2cq4_A RNA binding motif prote 99.0 5.7E-10 1.9E-14 87.0 5.7 40 307-346 25-72 (114)
286 1whx_A Hypothetical protein ri 99.0 3.1E-10 1.1E-14 88.2 4.2 40 307-346 10-51 (111)
287 1wg5_A Heterogeneous nuclear r 99.0 6.9E-10 2.4E-14 85.1 6.0 42 305-346 13-62 (104)
288 3lqv_A PRE-mRNA branch site pr 99.0 6.2E-10 2.1E-14 86.9 5.8 43 304-346 5-52 (115)
289 2cq0_A Eukaryotic translation 99.0 6.2E-10 2.1E-14 85.1 5.7 44 303-346 11-62 (103)
290 2cqd_A RNA-binding region cont 99.0 8.3E-10 2.8E-14 86.3 6.5 44 303-346 13-64 (116)
291 1uaw_A Mouse-musashi-1; RNP-ty 99.0 2.8E-10 9.5E-15 82.0 3.4 39 308-346 1-47 (77)
292 2cph_A RNA binding motif prote 99.0 6.4E-10 2.2E-14 85.5 5.7 43 304-346 12-63 (107)
293 2ywk_A Putative RNA-binding pr 99.0 6.6E-10 2.3E-14 83.5 5.6 44 303-346 12-62 (95)
294 2xs2_A Deleted in azoospermia- 99.0 4.2E-10 1.4E-14 85.9 4.5 41 306-346 8-55 (102)
295 2e5j_A Methenyltetrahydrofolat 99.0 4.6E-10 1.6E-14 84.9 4.7 42 304-346 16-61 (97)
296 1u6f_A Tcubp1, RNA-binding pro 99.0 1.7E-09 5.7E-14 87.4 8.0 44 303-346 38-89 (139)
297 2dng_A Eukaryotic translation 98.9 1.1E-09 3.8E-14 83.7 6.5 43 303-346 11-61 (103)
298 2cqb_A Peptidyl-prolyl CIS-tra 98.9 4.6E-10 1.6E-14 85.6 4.4 42 305-346 10-59 (102)
299 2dgo_A Cytotoxic granule-assoc 98.9 1.1E-09 3.8E-14 85.4 6.6 44 303-346 11-62 (115)
300 3ex7_B RNA-binding protein 8A; 98.9 6E-10 2.1E-14 88.4 5.2 44 303-346 18-69 (126)
301 3p5t_L Cleavage and polyadenyl 98.9 2.9E-10 1E-14 84.8 3.1 39 308-346 2-50 (90)
302 2lea_A Serine/arginine-rich sp 98.9 2.7E-10 9.3E-15 91.8 3.0 40 307-346 47-94 (135)
303 2fy1_A RNA-binding motif prote 98.9 7.2E-10 2.5E-14 86.9 5.3 42 305-346 5-53 (116)
304 2dis_A Unnamed protein product 98.9 5.3E-10 1.8E-14 86.3 4.4 42 305-346 6-57 (109)
305 3ns6_A Eukaryotic translation 98.9 2.8E-10 9.7E-15 86.7 2.8 40 307-346 6-59 (100)
306 1wez_A HnRNP H', FTP-3, hetero 98.9 7E-10 2.4E-14 84.8 4.9 41 305-346 13-60 (102)
307 2kxn_B Transformer-2 protein h 98.9 8.6E-10 3E-14 88.1 5.6 44 303-346 42-93 (129)
308 1nu4_A U1A RNA binding domain; 98.9 7.4E-10 2.5E-14 83.6 4.8 42 305-346 6-56 (97)
309 2mss_A Protein (musashi1); RNA 98.9 3.8E-10 1.3E-14 81.0 2.8 38 309-346 1-46 (75)
310 2cpy_A RNA-binding protein 12; 98.9 6.7E-10 2.3E-14 86.7 4.4 43 304-346 12-62 (114)
311 3n9u_C Cleavage and polyadenyl 98.9 7.5E-10 2.6E-14 91.4 4.9 41 306-346 54-104 (156)
312 1x5s_A Cold-inducible RNA-bind 98.9 1E-09 3.5E-14 83.7 5.2 42 305-346 10-59 (102)
313 2a3j_A U1 small nuclear ribonu 98.9 1E-09 3.5E-14 87.4 5.3 43 304-346 26-77 (127)
314 2do0_A HnRNP M, heterogeneous 98.9 1.8E-09 6.2E-14 84.0 6.6 43 304-346 12-61 (114)
315 2cqh_A IGF-II mRNA-binding pro 98.9 5.7E-10 2E-14 83.6 3.4 42 305-346 6-49 (93)
316 1x5t_A Splicing factor 3B subu 98.9 6.2E-10 2.1E-14 83.8 3.5 42 305-346 3-53 (96)
317 1x5o_A RNA binding motif, sing 98.9 2E-09 6.8E-14 83.8 6.5 44 303-346 21-71 (114)
318 1owx_A Lupus LA protein, SS-B, 98.9 4.2E-09 1.4E-13 82.4 8.3 73 42-114 16-95 (121)
319 2dnl_A Cytoplasmic polyadenyla 98.9 7E-10 2.4E-14 86.6 3.8 40 306-346 7-57 (114)
320 2db1_A Heterogeneous nuclear r 98.9 1E-09 3.4E-14 86.3 4.5 42 305-346 15-66 (118)
321 1iqt_A AUF1, heterogeneous nuc 98.9 3.7E-10 1.3E-14 81.0 1.8 38 309-346 1-46 (75)
322 1p1t_A Cleavage stimulation fa 98.9 9.4E-10 3.2E-14 84.1 4.1 40 307-346 8-55 (104)
323 3ucg_A Polyadenylate-binding p 98.9 1.7E-09 5.9E-14 80.1 5.4 40 307-346 6-53 (89)
324 2kt5_A RNA and export factor-b 98.9 1.7E-09 5.9E-14 85.6 5.6 44 303-346 31-81 (124)
325 2hzc_A Splicing factor U2AF 65 98.9 1.3E-09 4.4E-14 80.5 4.5 42 305-346 4-58 (87)
326 1x4b_A Heterogeneous nuclear r 98.9 8.3E-10 2.9E-14 86.3 3.5 41 306-346 26-74 (116)
327 2j76_E EIF-4B, EIF4B, eukaryot 98.9 7.1E-10 2.4E-14 84.4 2.9 43 303-346 15-66 (100)
328 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.9 2.1E-09 7.3E-14 86.7 5.9 44 303-346 59-110 (140)
329 2ki2_A SS-DNA binding protein 98.9 4.1E-10 1.4E-14 83.8 1.4 39 308-346 2-48 (90)
330 1wel_A RNA-binding protein 12; 98.9 7.9E-10 2.7E-14 87.6 3.1 44 303-346 21-72 (124)
331 2jwn_A Embryonic polyadenylate 98.9 1.5E-09 5E-14 85.9 4.7 40 307-346 36-83 (124)
332 2dha_A FLJ20171 protein; RRM d 98.9 1.1E-09 3.6E-14 86.7 3.8 41 306-346 22-73 (123)
333 2hvz_A Splicing factor, argini 98.9 1.2E-09 4E-14 83.2 3.8 39 308-346 1-42 (101)
334 1h2v_Z 20 kDa nuclear CAP bind 98.9 2.6E-09 8.8E-14 88.1 6.1 43 304-346 36-86 (156)
335 2cqp_A RNA-binding protein 12; 98.9 9.7E-10 3.3E-14 83.1 3.2 42 305-346 13-62 (98)
336 2hgl_A HNRPF protein, heteroge 98.9 1.5E-09 5.3E-14 87.3 4.4 42 305-346 42-93 (136)
337 2ek1_A RNA-binding protein 12; 98.8 7.1E-10 2.4E-14 83.3 2.2 40 307-346 15-62 (95)
338 2lmi_A GRSF-1, G-rich sequence 98.8 1.1E-09 3.9E-14 84.4 3.2 42 305-346 9-60 (107)
339 2dnn_A RNA-binding protein 12; 98.8 1.7E-09 5.8E-14 83.7 3.8 39 307-346 16-61 (109)
340 3q2s_C Cleavage and polyadenyl 98.8 2.4E-09 8.1E-14 94.1 5.2 41 306-346 67-117 (229)
341 2cpi_A CCR4-NOT transcription 98.8 2.5E-09 8.4E-14 83.0 4.7 44 303-346 11-68 (111)
342 1x5p_A Negative elongation fac 98.8 5.9E-09 2E-13 78.7 6.7 41 304-346 12-54 (97)
343 3zzy_A Polypyrimidine tract-bi 98.8 3.6E-09 1.2E-13 84.1 5.5 40 307-346 28-71 (130)
344 1ufw_A Synaptojanin 2; RNP dom 98.8 6.7E-09 2.3E-13 76.7 6.5 72 42-114 13-94 (95)
345 2hgn_A Heterogeneous nuclear r 98.8 1.2E-09 4.1E-14 88.3 2.6 40 306-346 45-91 (139)
346 2hgm_A HNRPF protein, heteroge 98.8 3.6E-09 1.2E-13 84.0 5.3 41 305-346 40-89 (126)
347 1sjr_A Polypyrimidine tract-bi 98.8 3E-09 1E-13 87.8 4.9 40 307-346 46-89 (164)
348 2e5i_A Heterogeneous nuclear r 98.8 6.8E-09 2.3E-13 82.0 6.6 40 307-346 25-67 (124)
349 2cpe_A RNA-binding protein EWS 98.8 3.3E-09 1.1E-13 82.4 4.8 44 303-346 11-70 (113)
350 2cpx_A Hypothetical protein FL 98.8 3.7E-09 1.3E-13 82.4 5.0 43 304-346 22-72 (115)
351 1wg1_A KIAA1579 protein, homol 98.8 3.3E-09 1.1E-13 78.6 4.2 39 307-346 5-45 (88)
352 2e5g_A U6 snRNA-specific termi 98.8 6.8E-09 2.3E-13 77.9 6.0 40 307-346 8-50 (94)
353 1fj7_A Nucleolin RBD1, protein 98.8 1.7E-09 5.7E-14 82.4 1.6 41 305-346 15-63 (101)
354 2dgw_A Probable RNA-binding pr 98.7 1E-08 3.5E-13 76.3 5.7 41 305-346 8-55 (91)
355 3u1l_A PRE-mRNA-splicing facto 98.7 4.7E-09 1.6E-13 92.3 4.2 42 305-346 132-184 (240)
356 2fc9_A NCL protein; structure 98.7 6.7E-09 2.3E-13 78.9 4.3 44 303-346 11-58 (101)
357 1fjc_A Nucleolin RBD2, protein 98.7 6.4E-09 2.2E-13 78.2 3.7 43 304-346 13-58 (96)
358 3egn_A RNA-binding protein 40; 98.7 7.1E-09 2.4E-13 84.1 3.8 43 304-346 42-97 (143)
359 2f3j_A RNA and export factor b 98.7 1.1E-08 3.7E-13 86.3 4.8 43 304-346 85-134 (177)
360 3pgw_S U1-70K; protein-RNA com 98.7 1.3E-08 4.5E-13 97.8 5.8 43 304-346 99-149 (437)
361 2bz2_A Negative elongation fac 98.7 1.1E-08 3.8E-13 80.7 4.4 40 305-346 37-78 (121)
362 2lcw_A RNA-binding protein FUS 98.1 2.1E-09 7.2E-14 84.0 0.0 42 305-346 5-62 (116)
363 2voo_A Lupus LA protein; RNA-b 98.7 1.6E-08 5.6E-13 86.4 5.3 40 307-346 109-155 (193)
364 2e44_A Insulin-like growth fac 98.7 1.9E-08 6.5E-13 75.6 4.9 41 306-346 14-59 (96)
365 2fc8_A NCL protein; structure 98.6 3.2E-08 1.1E-12 75.2 5.0 44 303-346 11-59 (102)
366 2diu_A KIAA0430 protein; struc 98.6 3.8E-08 1.3E-12 73.0 4.6 38 307-346 8-51 (96)
367 3dxb_A Thioredoxin N-terminall 98.5 1.6E-07 5.6E-12 81.8 6.7 59 56-114 141-212 (222)
368 2l9w_A U4/U6 snRNA-associated- 98.4 1.3E-06 4.5E-11 65.8 8.5 72 42-113 19-98 (117)
369 1owx_A Lupus LA protein, SS-B, 98.4 2.6E-07 8.8E-12 72.2 4.6 42 305-346 16-60 (121)
370 2dit_A HIV TAT specific factor 98.2 1.9E-06 6.6E-11 66.6 5.5 44 303-346 11-69 (112)
371 2d9o_A DNAJ (HSP40) homolog, s 98.2 3.3E-06 1.1E-10 63.9 6.6 30 317-346 27-59 (100)
372 2pe8_A Splicing factor 45; RRM 98.2 1.9E-06 6.4E-11 65.9 5.1 42 305-346 6-61 (105)
373 3v4m_A Splicing factor U2AF 65 97.7 4.3E-05 1.5E-09 58.3 5.3 34 2-35 62-95 (105)
374 1jmt_A Splicing factor U2AF 35 97.7 4.1E-05 1.4E-09 58.2 4.9 34 1-34 70-103 (104)
375 3s6e_A RNA-binding protein 39; 97.6 6.1E-05 2.1E-09 58.3 5.3 35 1-35 57-91 (114)
376 3ue2_A Poly(U)-binding-splicin 97.6 8.3E-05 2.8E-09 57.9 5.3 34 2-35 74-107 (118)
377 2dnr_A Synaptojanin-1; RRM dom 97.5 0.00012 4.1E-09 53.7 4.6 34 2-36 52-85 (91)
378 1wey_A Calcipressin 1; structu 97.4 0.00033 1.1E-08 52.5 6.4 71 44-114 5-83 (104)
379 2dhx_A Poly (ADP-ribose) polym 97.3 0.0015 5.3E-08 48.7 8.5 72 42-114 6-83 (104)
380 1ufw_A Synaptojanin 2; RNP dom 97.1 0.00045 1.6E-08 50.9 4.1 33 2-35 61-93 (95)
381 3ts2_A Protein LIN-28 homolog 96.9 0.00019 6.4E-09 58.1 1.0 99 59-160 2-131 (148)
382 1uw4_A UPF3X; nonsense mediate 96.9 0.0043 1.5E-07 45.6 8.1 59 45-103 2-71 (91)
383 1whv_A Poly(A)-specific ribonu 96.3 0.011 3.8E-07 43.5 6.8 52 45-97 17-69 (100)
384 3ctr_A Poly(A)-specific ribonu 96.3 0.0089 3E-07 44.2 6.0 51 46-98 8-60 (101)
385 1wwh_A Nucleoporin 35, nucleop 96.1 0.032 1.1E-06 42.9 8.4 68 43-112 23-94 (119)
386 3tht_A Alkylated DNA repair pr 94.9 0.027 9.3E-07 51.8 5.1 35 1-35 58-97 (345)
387 2l9w_A U4/U6 snRNA-associated- 94.8 0.04 1.4E-06 41.5 4.9 32 2-33 65-96 (117)
388 2l08_A Regulator of nonsense t 94.7 0.046 1.6E-06 40.4 4.9 60 44-103 9-79 (97)
389 2j8a_A Histone-lysine N-methyl 94.3 0.025 8.5E-07 44.3 2.8 36 1-36 50-95 (136)
390 2dhx_A Poly (ADP-ribose) polym 93.8 0.063 2.1E-06 40.0 4.1 50 2-57 50-99 (104)
391 3pq1_A Poly(A) RNA polymerase; 93.8 0.028 9.7E-07 53.7 2.7 51 44-95 53-107 (464)
392 1a6b_B Momulv, zinc finger pro 93.7 0.11 3.6E-06 31.7 4.3 27 119-145 5-31 (40)
393 3p3d_A Nucleoporin 53; structu 93.3 0.1 3.5E-06 40.6 4.8 69 44-114 7-98 (132)
394 1uw4_A UPF3X; nonsense mediate 92.5 0.17 5.7E-06 37.0 4.7 33 308-340 2-34 (91)
395 1dsq_A Nucleic acid binding pr 92.5 0.073 2.5E-06 29.1 2.1 20 125-144 3-22 (26)
396 3dxb_A Thioredoxin N-terminall 92.1 0.088 3E-06 45.0 3.2 23 318-340 140-162 (222)
397 1u6p_A GAG polyprotein; MLV, A 90.0 0.24 8.3E-06 32.5 3.0 25 121-145 20-44 (56)
398 3ctr_A Poly(A)-specific ribonu 88.0 0.38 1.3E-05 35.5 3.2 25 309-334 8-32 (101)
399 1whv_A Poly(A)-specific ribonu 85.2 0.95 3.2E-05 33.3 4.0 26 308-334 17-42 (100)
400 1wey_A Calcipressin 1; structu 82.7 0.95 3.2E-05 33.7 3.2 34 3-36 50-83 (104)
401 2ysa_A Retinoblastoma-binding 80.1 0.62 2.1E-05 30.4 1.2 19 124-142 7-25 (55)
402 3pq1_A Poly(A) RNA polymerase; 79.7 0.88 3E-05 43.4 2.6 37 307-344 53-89 (464)
403 2ec7_A GAG polyprotein (PR55GA 79.5 2.8 9.5E-05 26.4 4.2 34 124-160 6-39 (49)
404 2li8_A Protein LIN-28 homolog 79.2 3.7 0.00013 28.5 5.1 38 121-160 21-58 (74)
405 2l08_A Regulator of nonsense t 78.5 0.85 2.9E-05 33.5 1.6 27 307-333 9-35 (97)
406 3d45_A Poly(A)-specific ribonu 78.5 3.4 0.00012 39.9 6.4 53 44-98 440-494 (507)
407 2a51_A Nucleocapsid protein; s 77.3 2.8 9.6E-05 24.9 3.5 32 126-160 2-33 (39)
408 2g0c_A ATP-dependent RNA helic 75.9 2.5 8.6E-05 29.1 3.5 68 46-113 2-75 (76)
409 2cqf_A RNA-binding protein LIN 74.4 5.6 0.00019 26.5 4.8 35 124-160 7-41 (63)
410 1cl4_A Protein (GAG polyprotei 74.1 1.4 4.9E-05 29.1 1.7 35 126-160 3-42 (60)
411 3p3d_A Nucleoporin 53; structu 74.0 3.6 0.00012 31.9 4.2 32 3-35 66-97 (132)
412 2ihx_A Nucleocapsid (NC) prote 74.0 2.5 8.7E-05 28.0 3.0 37 124-160 4-42 (61)
413 1a1t_A Nucleocapsid protein; s 70.5 2.6 8.8E-05 27.2 2.3 36 122-160 10-45 (55)
414 2bl6_A Nucleocapsid protein P1 69.0 4.9 0.00017 23.5 3.1 30 126-160 2-31 (37)
415 1nc8_A Nucleocapsid protein; H 68.8 2.3 7.9E-05 23.5 1.5 20 124-143 6-25 (29)
416 1wwh_A Nucleoporin 35, nucleop 60.2 11 0.00037 28.7 4.3 32 3-35 63-95 (119)
417 3nyb_B Protein AIR2; polya RNA 49.3 6.1 0.00021 28.0 1.3 23 124-146 46-68 (83)
418 3fut_A Dimethyladenosine trans 37.8 27 0.00094 30.4 4.0 32 308-340 111-142 (271)
419 4eyt_A Telomerase associated p 36.4 1.1E+02 0.0039 21.6 7.8 55 43-97 11-66 (129)
420 3uzu_A Ribosomal RNA small sub 34.4 17 0.00059 31.9 2.1 33 308-340 115-147 (279)
421 3tqs_A Ribosomal RNA small sub 29.1 21 0.00071 30.9 1.6 31 310-340 99-129 (255)
422 3c8l_A FTSZ-like protein of un 25.6 29 0.001 26.3 1.7 30 310-342 60-89 (122)
423 4e8u_A Putative uncharacterize 25.5 2.1E+02 0.007 23.1 6.8 49 47-95 15-81 (172)
424 1i4w_A Mitochondrial replicati 24.4 44 0.0015 30.4 3.0 22 309-330 144-165 (353)
425 2yty_A Cold shock domain-conta 24.4 21 0.00071 25.5 0.6 15 330-346 19-33 (88)
426 1wfq_A UNR protein; beta-barre 22.8 23 0.00079 25.3 0.6 14 331-346 20-33 (89)
427 3ts2_A Protein LIN-28 homolog 22.4 34 0.0011 26.9 1.5 22 124-145 119-140 (148)
428 1ik9_C DNA ligase IV; DNA END 21.5 49 0.0017 19.3 1.8 15 317-331 20-34 (37)
429 2e5p_A Protein PHF1, PHD finge 21.4 37 0.0012 22.7 1.3 19 69-87 28-46 (68)
430 4aj5_1 SKA3, spindle and kinet 20.6 33 0.0011 25.0 1.0 12 321-332 90-101 (101)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1.6e-28 Score=224.41 Aligned_cols=107 Identities=20% Similarity=0.339 Sum_probs=101.0
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 77 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--- 77 (346)
.|||+|.+.++|++|++.|||..+.|+.|.|.+.. ..++|||+|||+.+++++|+++|+.||.|.++.++
T Consensus 59 ~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~-------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~ 131 (284)
T 3smz_A 59 TAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP-------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSE 131 (284)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC-------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred EEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC-------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeC
Confidence 48999999999999999999999999999999864 35799999999999999999999999999999887
Q ss_pred -----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 78 -----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 78 -----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+|||||+|.+ ++|.+|+..|+|..++|++|.|.++.+
T Consensus 132 ~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 132 RTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 5799999999 999999999999999999999999877
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=3e-28 Score=223.41 Aligned_cols=105 Identities=15% Similarity=0.356 Sum_probs=99.5
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEE--
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG-TVVECDIV-- 77 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G-~v~~~~i~-- 77 (346)
.|||+|.+.++|++|++ +|+..+.|+.|.|.++. .++|||+|||+.+++++|+++|+.|| .|.+|.++
T Consensus 83 ~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~--------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~ 153 (292)
T 2ghp_A 83 FARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT--------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSL 153 (292)
T ss_dssp EEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC--------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--
T ss_pred EEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC--------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeC
Confidence 38999999999999995 99999999999999864 68999999999999999999999999 99999886
Q ss_pred -----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 78 -----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 78 -----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+|||||+|.+ ++|.+|+..|+|..+.|+.|.|.++.+
T Consensus 154 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 196 (292)
T 2ghp_A 154 RFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP 196 (292)
T ss_dssp -----CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 7999999999 999999999999999999999999887
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.93 E-value=1.3e-25 Score=196.75 Aligned_cols=74 Identities=20% Similarity=0.495 Sum_probs=67.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
..+.++|||+|||+++++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|+..+|+..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 3567899999999999999999999999999999997 5899999999 999999999999999999999988
Q ss_pred eec
Q psy16419 112 AGF 114 (346)
Q Consensus 112 a~~ 114 (346)
+..
T Consensus 92 ~~~ 94 (213)
T 4f02_A 92 SQR 94 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 766
No 4
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.92 E-value=6.1e-25 Score=191.27 Aligned_cols=72 Identities=21% Similarity=0.341 Sum_probs=69.0
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHhhcCCCCeEEEEEE---CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 43 PTTKVFVGNLS-DNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 43 ~~~~lfV~nLp-~~~~e~~L~~~F~~~G~v~~~~i~---~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
++++|||+||| +.+++++|+++|++||.|.+|+|+ +|||||+|.+ ++|++|++.|||..+.|++|+|.+++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 47899999999 899999999999999999999998 6999999999 999999999999999999999999876
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.92 E-value=1e-24 Score=187.69 Aligned_cols=72 Identities=26% Similarity=0.505 Sum_probs=67.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
...++|||+|||+++++++|+++|++||.|.+|.++ +|||||+|.+ ++|.+|+.. ++..++|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 557899999999999999999999999999999987 5799999999 999999986 999999999999998
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
..
T Consensus 90 ~~ 91 (196)
T 1l3k_A 90 VS 91 (196)
T ss_dssp CC
T ss_pred cC
Confidence 76
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.92 E-value=3.5e-24 Score=179.70 Aligned_cols=72 Identities=33% Similarity=0.505 Sum_probs=68.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
+.++|||+|||.++++++|+++|++||.|.++.++ +|||||+|.+ ++|.+|++.|+|..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999887 5899999999 99999999999999999999999987
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
+
T Consensus 82 ~ 82 (168)
T 1b7f_A 82 P 82 (168)
T ss_dssp C
T ss_pred C
Confidence 7
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.92 E-value=4.3e-24 Score=178.75 Aligned_cols=71 Identities=35% Similarity=0.546 Sum_probs=67.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.++|||+|||+++++++|+++|+.||.|.++.++ +|||||+|.+ ++|.+|++.|+|..+.|++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5899999999999999999999999999999997 3899999999 999999999999999999999998876
No 8
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.91 E-value=3.6e-23 Score=188.56 Aligned_cols=73 Identities=19% Similarity=0.508 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HhhcCCCCeEEEEEE-----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVR----ELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~----~~F~~~G~v~~~~i~-----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
.+.++|||+|||+++++++|+ ++|++||.|.+|.++ +|||||+|.+ ++|.+|++.|||..|.|+.|+|.+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 86 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 86 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEE
Confidence 568999999999999999966 899999999999987 6999999999 999999999999999999999999
Q ss_pred eec
Q psy16419 112 AGF 114 (346)
Q Consensus 112 a~~ 114 (346)
++.
T Consensus 87 a~~ 89 (282)
T 3pgw_A 87 AKT 89 (282)
T ss_pred ecc
Confidence 977
No 9
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.7e-24 Score=177.40 Aligned_cols=70 Identities=26% Similarity=0.406 Sum_probs=66.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 45 ~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
++|||+|||.++++++|+++|++||.|.++.++ +|||||+|.+ ++|.+|+..|+|..+.|+.|.|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 479999999999999999999999999999997 5899999999 999999999999999999999999876
No 10
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.91 E-value=1e-23 Score=190.33 Aligned_cols=73 Identities=29% Similarity=0.572 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
...++|||+|||+++|+++|+++|++||.|.+|.+. +|||||+|.+ ++|.+|+..|||..+.|+.|.|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 567899999999999999999999999999999998 8999999999 999999999999999999999988655
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.90 E-value=8.6e-23 Score=175.95 Aligned_cols=71 Identities=18% Similarity=0.457 Sum_probs=65.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCC----C-------CeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEECCEEEE
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPY----G-------TVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMK 108 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~----G-------~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~ 108 (346)
..++|||+|||+++++++|+++|++| | .|.++.+. +|||||+|.+ ++|.+|+ .|||..+.|++|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 46899999999999999999999999 6 78888877 8999999999 9999999 8999999999999
Q ss_pred EEEeec
Q psy16419 109 VVVAGF 114 (346)
Q Consensus 109 v~~a~~ 114 (346)
|.++..
T Consensus 82 v~~~~~ 87 (198)
T 2yh0_A 82 IRRPHD 87 (198)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 998776
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.90 E-value=3.5e-23 Score=174.64 Aligned_cols=72 Identities=26% Similarity=0.424 Sum_probs=62.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE----------CCEEEEEecC-HHHHHHHHHhCCcEEC---CEEEE
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV----------RNYGFVHIDS-PDINKCIKELNGMMVD---GKPMK 108 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~----------~g~afV~f~~-~~a~~Ai~~l~g~~~~---g~~l~ 108 (346)
+.++|||+|||+++++++|+++|++||.|.++.++ +|||||+|.+ ++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999886 4799999999 9999999999998765 45555
Q ss_pred EEEeec
Q psy16419 109 VVVAGF 114 (346)
Q Consensus 109 v~~a~~ 114 (346)
+.++..
T Consensus 82 ~~~~~~ 87 (175)
T 3nmr_A 82 MKPADS 87 (175)
T ss_dssp EEECGG
T ss_pred Eccccc
Confidence 555444
No 13
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.90 E-value=4.5e-23 Score=182.53 Aligned_cols=73 Identities=22% Similarity=0.433 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEE---CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSD-NTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~-~~~e~~L~~~F~~~G~v~~~~i~---~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.++++|||+|||+ .+++++|+++|++||.|.+|.++ +|||||+|.+ ++|.+|++.|||..+.|+.|.|.++..
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 5689999999999 99999999999999999999998 7999999999 999999999999999999999999877
No 14
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.89 E-value=3.9e-23 Score=180.54 Aligned_cols=72 Identities=21% Similarity=0.492 Sum_probs=66.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
..++|||+|||.++++++|+++|++||.|.+|.++ +|||||+|.+ ++|.+|++.||+..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46799999999999999999999999999999996 7999999999 99999999999999999999997765
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
.
T Consensus 107 ~ 107 (216)
T 2qfj_A 107 N 107 (216)
T ss_dssp C
T ss_pred C
Confidence 5
No 15
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.89 E-value=6e-23 Score=172.92 Aligned_cols=71 Identities=18% Similarity=0.470 Sum_probs=65.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCC----C-------CeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEECCEEEE
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPY----G-------TVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMK 108 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~----G-------~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~ 108 (346)
+.++|||+|||+++++++|+++|++| | .|.++.+. +|||||+|.+ ++|.+|+ .|||..+.|++|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 46899999999999999999999999 7 88888887 8999999999 9999999 8999999999999
Q ss_pred EEEeec
Q psy16419 109 VVVAGF 114 (346)
Q Consensus 109 v~~a~~ 114 (346)
|.++..
T Consensus 82 v~~~~~ 87 (172)
T 2g4b_A 82 IRRPHD 87 (172)
T ss_dssp EECCSS
T ss_pred ecCCcc
Confidence 987655
No 16
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.89 E-value=6.1e-23 Score=177.25 Aligned_cols=71 Identities=23% Similarity=0.450 Sum_probs=68.5
Q ss_pred CcEEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEE---CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 44 TTKVFVGNLSD-NTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 44 ~~~lfV~nLp~-~~~e~~L~~~F~~~G~v~~~~i~---~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+++|||+|||+ .+++++|+++|++||.|.+|.++ +|||||+|.+ ++|.+|+..|||..+.|++|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 58999999999 99999999999999999999998 7999999999 999999999999999999999999887
No 17
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.89 E-value=2.8e-23 Score=174.13 Aligned_cols=70 Identities=30% Similarity=0.556 Sum_probs=63.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
+.++|||+|||+++++++|+++|++||.|.+|.++ +|||||+|.+ ++|.+|+.. +..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 46899999999999999999999999999999987 5899999999 999999984 678999999887765
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 5
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.88 E-value=4.6e-22 Score=181.41 Aligned_cols=71 Identities=15% Similarity=0.298 Sum_probs=66.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+.++|||+|||.++++++|+++|+.|| |.++.+. +|||||+|.+ ++|.+|+..|||..+.|++|.|.++..
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~ 94 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT 94 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCC
Confidence 468999999999999999999999999 9999888 8999999999 999999999999999999999977433
No 19
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.4e-21 Score=163.11 Aligned_cols=113 Identities=23% Similarity=0.451 Sum_probs=105.0
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC-CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-- 77 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~-~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-- 77 (346)
.|||+|.+.++|++|++.|||..+.|+.|.|.++..... ...+.++|||+|||..+++++|+++|++||.|.++.+.
T Consensus 43 ~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~ 122 (166)
T 3md3_A 43 YAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD 122 (166)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEEC
T ss_pred EEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEec
Confidence 389999999999999999999999999999999876543 34568899999999999999999999999999999987
Q ss_pred ------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 78 ------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 78 ------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
+|||||+|.+ ++|.+|+..|||..++|++|+|.+++
T Consensus 123 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 123 MQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp TTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 5799999999 99999999999999999999999986
No 20
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.86 E-value=2.3e-22 Score=169.98 Aligned_cols=72 Identities=26% Similarity=0.423 Sum_probs=63.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEE-----EEE--CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC-----DIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~-----~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
.+.++|||+|||.++++++|+++|+.||.+..+ ... +|||||+|.+ ++|.+|+ +|||..+.|++|.|.++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCC
Confidence 568999999999999999999999999865442 221 7999999999 9999999 599999999999999887
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
+
T Consensus 90 ~ 90 (175)
T 1fje_B 90 G 90 (175)
T ss_dssp C
T ss_pred C
Confidence 6
No 21
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.86 E-value=3e-21 Score=162.45 Aligned_cols=111 Identities=23% Similarity=0.401 Sum_probs=102.5
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 77 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--- 77 (346)
.|||+|.+.++|++|+ .|||..+.|++|.|.++...... ...++|||+|||..+++++|+++|++||.|.++.+.
T Consensus 53 ~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~-~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~ 130 (172)
T 2g4b_A 53 FAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPL-PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 130 (172)
T ss_dssp EEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCC-TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECT
T ss_pred EEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCC-CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecC
Confidence 4899999999999999 79999999999999988765433 457899999999999999999999999999999987
Q ss_pred -----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 78 -----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 78 -----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
+|||||+|.+ ++|.+|+..|||..++|++|.|++|.
T Consensus 131 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 131 ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 5899999999 99999999999999999999999873
No 22
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.86 E-value=1.7e-21 Score=170.54 Aligned_cols=114 Identities=19% Similarity=0.463 Sum_probs=104.7
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCC-CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP-NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-- 77 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~-~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-- 77 (346)
.|||+|.+.++|++|++.+|+..+.|+.|.+.++...... .....+|||+|||+.+++++|+++|++||.|.+|.|+
T Consensus 59 ~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d 138 (213)
T 4f02_A 59 YAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 138 (213)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE
T ss_pred cccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeecc
Confidence 3899999999999999999999999999999988754321 1346789999999999999999999999999999987
Q ss_pred ----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 78 ----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 78 ----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+|||||+|.+ ++|.+|++.|||..|+|++|.|.++.+
T Consensus 139 ~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 139 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp TTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 7899999999 999999999999999999999999987
No 23
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.86 E-value=5.3e-21 Score=160.24 Aligned_cols=111 Identities=27% Similarity=0.470 Sum_probs=103.0
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 77 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--- 77 (346)
.|||+|.+.++|++|++.|+|..+.|++|.|.++.+.... ...++|||+|||..+++++|+++|++||.|.++.+.
T Consensus 47 ~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~-~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~ 125 (168)
T 1b7f_A 47 YAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGES-IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDK 125 (168)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSST-TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECT
T ss_pred EEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCccc-CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcC
Confidence 3899999999999999999999999999999998866543 567899999999999999999999999999999987
Q ss_pred -----CCEEEEEecC-HHHHHHHHHhCCcEECC--EEEEEEEe
Q psy16419 78 -----RNYGFVHIDS-PDINKCIKELNGMMVDG--KPMKVVVA 112 (346)
Q Consensus 78 -----~g~afV~f~~-~~a~~Ai~~l~g~~~~g--~~l~v~~a 112 (346)
+|||||+|.+ ++|.+|+..|||..+.| ++|+|++|
T Consensus 126 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 126 LTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 4899999999 99999999999999988 99999885
No 24
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.86 E-value=6.3e-21 Score=164.18 Aligned_cols=113 Identities=23% Similarity=0.398 Sum_probs=103.6
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCC-------------------CCCCcEEEEcCCCCCCCHHHH
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP-------------------NTPTTKVFVGNLSDNTRAPEV 61 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~-------------------~~~~~~lfV~nLp~~~~e~~L 61 (346)
.|||+|.+.++|++|+ .|||..+.|+.|.|.++...... ....++|||+|||..+++++|
T Consensus 53 ~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l 131 (198)
T 2yh0_A 53 FAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQV 131 (198)
T ss_dssp EEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHH
T ss_pred EEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 3899999999999999 79999999999999987654221 145689999999999999999
Q ss_pred HHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 62 RELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 62 ~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+++|++||.|.++.+. +|||||+|.+ ++|.+|+..|||..++|+.|+|.++.+
T Consensus 132 ~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 132 KELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp HHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 9999999999999987 5899999999 999999999999999999999999988
No 25
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.85 E-value=1.9e-21 Score=178.07 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=63.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
....++|||+|||+++++++|+++|+.||.|.+|.|+ +|||||+|.+ ++|.+|+. ++|..++|+.|.|.++
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL 115 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC
Confidence 3568999999999999999999999999999999997 5899999999 99999995 9999999999998664
No 26
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.85 E-value=6.6e-21 Score=161.03 Aligned_cols=112 Identities=21% Similarity=0.317 Sum_probs=102.3
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC-CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-- 77 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~-~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-- 77 (346)
.|||+|.+.++|++|++ |||..+.|++|.|.++..+.. .....++|||+|||..+++++|+++|++||.|..+ ..
T Consensus 56 ~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~ 133 (175)
T 1fje_B 56 FGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDG 133 (175)
T ss_dssp EEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSS
T ss_pred EEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCC
Confidence 48999999999999995 999999999999999886543 23567899999999999999999999999999887 22
Q ss_pred --CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 78 --RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 78 --~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+|||||+|.+ ++|.+|+..|||..++|++|+|+++.+
T Consensus 134 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 134 KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred CCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 7999999999 999999999999999999999999987
No 27
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.85 E-value=1.2e-20 Score=157.61 Aligned_cols=111 Identities=25% Similarity=0.451 Sum_probs=101.5
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 77 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--- 77 (346)
.|||+|.+.++|++|++.|+|..+.|+.|.|.++.+.... ...++|||+|||..+++++|+++|++||.|.++.+.
T Consensus 46 ~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~-~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~ 124 (167)
T 1fxl_A 46 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 124 (167)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGG-GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred EEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCccc-CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecC
Confidence 3899999999999999999999999999999998865432 457899999999999999999999999999999887
Q ss_pred -----CCEEEEEecC-HHHHHHHHHhCCcEECCEE--EEEEEe
Q psy16419 78 -----RNYGFVHIDS-PDINKCIKELNGMMVDGKP--MKVVVA 112 (346)
Q Consensus 78 -----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~--l~v~~a 112 (346)
+|||||+|.+ ++|.+|+..|||..++|+. |+|.+|
T Consensus 125 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 125 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 5899999999 9999999999999999975 888775
No 28
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=3.9e-21 Score=151.70 Aligned_cols=71 Identities=24% Similarity=0.608 Sum_probs=68.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.++|||+|||+++++++|+++|++||.|.+|.|+ ||||||+|.+ ++|++|++.|||..|+|++|+|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5789999999999999999999999999999998 6899999999 999999999999999999999999877
No 29
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=2.3e-21 Score=160.30 Aligned_cols=112 Identities=21% Similarity=0.357 Sum_probs=102.3
Q ss_pred eEEEecCHHHHHHHHHHh-CCCeeCCeeeEEeecCCC---------------CCCCCCCcEEEEcCCCCCCCHHHHHHhh
Q psy16419 2 SSGHMENDEEGRTAIKEL-NGQIVNEKPLKIEAATSR---------------KGPNTPTTKVFVGNLSDNTRAPEVRELF 65 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~l-ng~~l~g~~i~v~~~~~~---------------~~~~~~~~~lfV~nLp~~~~e~~L~~~F 65 (346)
++|+|.+.++|++|++++ ||..+.| .+.+..+..+ .......++|||+|||+.+++++|+++|
T Consensus 16 ~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F 94 (150)
T 2i2y_A 16 TTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAF 94 (150)
T ss_dssp EEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHH
T ss_pred ceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 467899999999999999 9999999 9999887642 1223567999999999999999999999
Q ss_pred cCCCCeEEEEEE---CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 66 VPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 66 ~~~G~v~~~~i~---~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
++||.|.+|.|+ +|||||+|.+ ++|.+|+..|||..++|++|+|+++.+
T Consensus 95 ~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 95 GYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp HHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred HhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 999999999998 7999999999 999999999999999999999999988
No 30
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.84 E-value=2.4e-20 Score=169.81 Aligned_cols=113 Identities=21% Similarity=0.365 Sum_probs=102.9
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC-----------------------------------------
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG----------------------------------------- 39 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~----------------------------------------- 39 (346)
.|||+|.+.++|++|++.|||..|.|+.|.|.++..+..
T Consensus 54 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (282)
T 3pgw_A 54 QAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPV 133 (282)
T ss_pred EEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCccc
Confidence 489999999999999999999999999999998765431
Q ss_pred ---------------------------------------------------------------------CCCCCcEEEEc
Q psy16419 40 ---------------------------------------------------------------------PNTPTTKVFVG 50 (346)
Q Consensus 40 ---------------------------------------------------------------------~~~~~~~lfV~ 50 (346)
...+.++|||+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 213 (282)
T 3pgw_A 134 VGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLT 213 (282)
T ss_pred CCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEe
Confidence 11245789999
Q ss_pred CCCCCCCHHHHHHhhcCCCCeEEEEEE---CCEEEEEecC-HHHHHHHHHhCCcEEC-CEEEEEEEee
Q psy16419 51 NLSDNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVD-GKPMKVVVAG 113 (346)
Q Consensus 51 nLp~~~~e~~L~~~F~~~G~v~~~~i~---~g~afV~f~~-~~a~~Ai~~l~g~~~~-g~~l~v~~a~ 113 (346)
|||..+++++|+++|++||.|.+|.+. +|||||+|.+ ++|.+|+..|||..++ |+.|+|.|++
T Consensus 214 nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 214 NLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 999999999999999999999999998 4999999999 9999999999999999 9999999986
No 31
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.84 E-value=9e-21 Score=165.48 Aligned_cols=114 Identities=13% Similarity=0.347 Sum_probs=104.0
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCC----------CCCCcEEEEcCCCCCCCHHHHHHhhcCCCC
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP----------NTPTTKVFVGNLSDNTRAPEVRELFVPYGT 70 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~----------~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~ 70 (346)
+|||+|.+.++|++|++.|++..+.|+.|.|.++...... ....++|||+|||..+++++|+++|++||.
T Consensus 72 ~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~ 151 (216)
T 2qfj_A 72 FAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK 151 (216)
T ss_dssp EEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSC
T ss_pred eEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCC
Confidence 4899999999999999999999999999999887755421 145689999999999999999999999999
Q ss_pred eEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 71 VVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 71 v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
|.++.+. +|||||+|.+ ++|.+|+..|||..|+|+.|.|.++.+
T Consensus 152 v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 152 IKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred eeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 9999997 5899999999 999999999999999999999999988
No 32
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.83 E-value=4.3e-20 Score=158.70 Aligned_cols=114 Identities=23% Similarity=0.360 Sum_probs=98.8
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCC-----CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEE
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN-----TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD 75 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~-----~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~ 75 (346)
.|||+|.+.++|++|++ +++..+.|+.|.|.++....... ...++|||+|||+.+++++|+++|++||.|..+.
T Consensus 57 ~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~ 135 (196)
T 1l3k_A 57 FGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135 (196)
T ss_dssp EEEEEESSHHHHHHHHH-TCSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEE
T ss_pred eEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEE
Confidence 48999999999999998 59999999999999987654322 3468999999999999999999999999999999
Q ss_pred EE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeeccC
Q psy16419 76 IV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFIS 116 (346)
Q Consensus 76 i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 116 (346)
++ +|||||+|.+ ++|.+|+.. ++..++|+.|.|.++.++.
T Consensus 136 i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC---
T ss_pred EeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChh
Confidence 87 6899999999 999999986 8999999999999998843
No 33
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.83 E-value=3.4e-20 Score=163.95 Aligned_cols=114 Identities=16% Similarity=0.328 Sum_probs=103.7
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC----------------------------------CCCCCcE
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG----------------------------------PNTPTTK 46 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~----------------------------------~~~~~~~ 46 (346)
+|||+|.+.++|++|++.|||..+.|+.|.|.++..+.. ...+.++
T Consensus 74 ~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (229)
T 2adc_A 74 NALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSAT 153 (229)
T ss_dssp CEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSE
T ss_pred EEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCE
Confidence 489999999999999999999999999999998864410 0123689
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEE---CCEEEEEecC-HHHHHHHHHhCCcEEC-CEEEEEEEeec
Q psy16419 47 VFVGNLSDNTRAPEVRELFVPYG-TVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVD-GKPMKVVVAGF 114 (346)
Q Consensus 47 lfV~nLp~~~~e~~L~~~F~~~G-~v~~~~i~---~g~afV~f~~-~~a~~Ai~~l~g~~~~-g~~l~v~~a~~ 114 (346)
|||+|||..+++++|+++|++|| .|.++.++ +|||||+|.+ ++|.+|+..|||..++ |++|+|.++++
T Consensus 154 l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 154 LHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred EEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 99999999999999999999999 99999995 7999999999 9999999999999999 99999999876
No 34
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.83 E-value=2.5e-20 Score=162.05 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=97.9
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC------------------------------------CCCCC
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG------------------------------------PNTPT 44 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~------------------------------------~~~~~ 44 (346)
.|||+|++.++|++|++.|||..|.|+.|.|.++..+.. ...+.
T Consensus 44 ~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~ 123 (205)
T 3tyt_A 44 AAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPS 123 (205)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCc
Confidence 489999999999999999999999999999998753210 00235
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCe--EEEEEE------CCEEEEEecC-HHHHHHHHHhCCcEECCE----EEEEEE
Q psy16419 45 TKVFVGNLSDNTRAPEVRELFVPYGTV--VECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGK----PMKVVV 111 (346)
Q Consensus 45 ~~lfV~nLp~~~~e~~L~~~F~~~G~v--~~~~i~------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~----~l~v~~ 111 (346)
.+|||+|||+++++++|+++|++||.| .++.+. +|||||+|.+ ++|.+|+..|||..|.|. ++.|++
T Consensus 124 ~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 124 NVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp SEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 689999999999999999999999999 888887 4899999999 999999999999999886 677776
Q ss_pred e
Q psy16419 112 A 112 (346)
Q Consensus 112 a 112 (346)
+
T Consensus 204 ~ 204 (205)
T 3tyt_A 204 C 204 (205)
T ss_dssp E
T ss_pred c
Confidence 5
No 35
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.83 E-value=2.6e-20 Score=156.98 Aligned_cols=113 Identities=23% Similarity=0.386 Sum_probs=102.8
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeC---CeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVN---EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV 77 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~---g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~ 77 (346)
.|||+|.+.++|++|++.|++..+. ++.+.+.++..........++|||+|||..+++++|+++|++||.|.++.++
T Consensus 49 ~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~ 128 (175)
T 3nmr_A 49 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRIL 128 (175)
T ss_dssp EEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE
T ss_pred EEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEE
Confidence 3899999999999999999998876 6888898888777666678999999999999999999999999999999987
Q ss_pred -------CCEEEEEecC-HHHHHHHHHhCCcEEC---CEEEEEEEee
Q psy16419 78 -------RNYGFVHIDS-PDINKCIKELNGMMVD---GKPMKVVVAG 113 (346)
Q Consensus 78 -------~g~afV~f~~-~~a~~Ai~~l~g~~~~---g~~l~v~~a~ 113 (346)
+|||||+|.+ ++|.+|+..|||..+. +++|.|.+|.
T Consensus 129 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 129 RGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp ECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred ECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 6899999999 9999999999998776 4999999873
No 36
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.83 E-value=2.2e-20 Score=161.19 Aligned_cols=114 Identities=16% Similarity=0.328 Sum_probs=103.8
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCC----------------------------------CCCCCcE
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG----------------------------------PNTPTTK 46 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~----------------------------------~~~~~~~ 46 (346)
.|||+|.+.++|++|++.|||..+.|+.|.|.++..... ...+.++
T Consensus 43 ~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 122 (198)
T 1qm9_A 43 NALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSAT 122 (198)
T ss_dssp CCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCE
T ss_pred EEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccE
Confidence 489999999999999999999999999999998764310 0134789
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEE---CCEEEEEecC-HHHHHHHHHhCCcEEC-CEEEEEEEeec
Q psy16419 47 VFVGNLSDNTRAPEVRELFVPYG-TVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVD-GKPMKVVVAGF 114 (346)
Q Consensus 47 lfV~nLp~~~~e~~L~~~F~~~G-~v~~~~i~---~g~afV~f~~-~~a~~Ai~~l~g~~~~-g~~l~v~~a~~ 114 (346)
|||+|||..+++++|+++|++|| .|.++.+. +|+|||+|.+ ++|.+|+..|||..++ |++|+|.++++
T Consensus 123 l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 123 LHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp EEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 99999999999999999999999 99999995 7999999999 9999999999999999 99999999876
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=1.3e-19 Score=150.85 Aligned_cols=113 Identities=19% Similarity=0.339 Sum_probs=92.9
Q ss_pred eEEEecCHHHHHHHHHHhCCCee-CC------eeeEEeecCC-----CCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCC
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIV-NE------KPLKIEAATS-----RKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYG 69 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l-~g------~~i~v~~~~~-----~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G 69 (346)
|||+|.+.++|++|++.+++... .| .......... ........++|||+|||+.+++++|+++|++||
T Consensus 16 ~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G 95 (158)
T 2kn4_A 16 TTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYG 95 (158)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHS
T ss_pred hHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 89999999999999988875322 22 2222222111 112234578999999999999999999999999
Q ss_pred CeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 70 TVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 70 ~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.|.+|.|+ +|||||+|.+ ++|.+|+..|||..++|++|+|.++.+
T Consensus 96 ~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 96 RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 99999987 6899999999 999999999999999999999999988
No 38
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.79 E-value=3.9e-20 Score=154.88 Aligned_cols=110 Identities=22% Similarity=0.403 Sum_probs=99.5
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 77 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--- 77 (346)
.|||+|.+.++|++|++. +..+.|+.|.+.++.++... ...++|||+|||..+++++|+++|++||.|.++.+.
T Consensus 47 ~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~~~-~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 123 (167)
T 2cjk_A 47 FGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPRDEQ-DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK 123 (167)
T ss_dssp CEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCHHHH-HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS
T ss_pred eEEEEEccHHHHHHHHhc--ccccCCeEcccccccchhhc-cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC
Confidence 489999999999999984 68999999999987654322 346799999999999999999999999999999987
Q ss_pred -----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 78 -----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 78 -----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+|||||+|.+ ++|.+|++ +++..++|++|.|.++.+
T Consensus 124 ~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 124 DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp SSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 5799999999 99999998 899999999999999987
No 39
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=133.43 Aligned_cols=73 Identities=32% Similarity=0.495 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
..+++|||+|||+++|+++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|++.|||..++|++|+|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 457899999999999999999999999999999987 5899999999 9999999999999999999999999
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 87
No 40
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.77 E-value=2.6e-18 Score=154.84 Aligned_cols=107 Identities=25% Similarity=0.374 Sum_probs=99.4
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 77 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--- 77 (346)
.|||+|.+.++|++|+..|||..+.|+.|.|.++.+ .++|||+|||+.+++++|+++|+.||.|.+|.|+
T Consensus 60 ~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~-------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~ 132 (261)
T 3sde_A 60 FGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH-------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD 132 (261)
T ss_dssp EEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred EEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC
Confidence 489999999999999999999999999999999864 5799999999999999999999999999999987
Q ss_pred ----CCEEEEEecC-HHHHHHHHHh-CCcEEC---CEEEEEEEeec
Q psy16419 78 ----RNYGFVHIDS-PDINKCIKEL-NGMMVD---GKPMKVVVAGF 114 (346)
Q Consensus 78 ----~g~afV~f~~-~~a~~Ai~~l-~g~~~~---g~~l~v~~a~~ 114 (346)
+|||||+|.+ ++|.+|+..| ++..+. +++|.|.++..
T Consensus 133 ~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 133 RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 7899999999 9999999999 555655 89999999887
No 41
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=7.7e-18 Score=141.28 Aligned_cols=111 Identities=19% Similarity=0.329 Sum_probs=70.2
Q ss_pred EEecCHHHHHHHHHHhCCCeeC--CeeeEEeecC-------------------CCCCCCCCCcEEEEcCCCCCCCHHHHH
Q psy16419 4 GHMENDEEGRTAIKELNGQIVN--EKPLKIEAAT-------------------SRKGPNTPTTKVFVGNLSDNTRAPEVR 62 (346)
Q Consensus 4 V~F~~~e~A~~Al~~lng~~l~--g~~i~v~~~~-------------------~~~~~~~~~~~lfV~nLp~~~~e~~L~ 62 (346)
.+|++.++|+.|+..+++.... |+.+...... +......+.++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 4789999999999999886654 5444443211 111123457889999999999999999
Q ss_pred HhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 63 ELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 63 ~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
++|++||.|..|.|+ +|||||+|.+ ++|.+||..|||..|.|++|.|.++.+
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 151 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 151 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 999999999999997 5899999999 999999999999999999999999988
No 42
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-17 Score=125.01 Aligned_cols=75 Identities=37% Similarity=0.661 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEECCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeecc
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFI 115 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 115 (346)
....++|||+|||..+++++|+++|++||.|.+|.++++||||+|.+ ++|.+|+..||+..++|+.|+|++++++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 35689999999999999999999999999999999999999999999 9999999999999999999999999883
No 43
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=124.48 Aligned_cols=75 Identities=37% Similarity=0.713 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEECCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeeccC
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFIS 116 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 116 (346)
.+.++|||+|||.++++++|+++|++||.|.++.++++||||+|.+ ++|++|++.||+..++|++|+|++++++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 5689999999999999999999999999999999999999999999 99999999999999999999999998833
No 44
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.73 E-value=2.4e-17 Score=127.11 Aligned_cols=75 Identities=23% Similarity=0.475 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEECCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeeccC
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFIS 116 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 116 (346)
.+.++|||+|||+.+++++|+++|++||.|.+|.++++||||+|.+ ++|.+|++.||+..|+|++|+|+++.++.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 4578999999999999999999999999999999999999999999 99999999999999999999999998843
No 45
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=1.4e-17 Score=122.60 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=68.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.+.-|||+||++.+||++|+++|.+||+|.++.+. ||||||+|.+ ++|++|++.||+..+.|++|+|++|..
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 36789999999999999999999999999999998 9999999999 999999999999999999999999854
No 46
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.3e-17 Score=126.32 Aligned_cols=75 Identities=20% Similarity=0.304 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEC-CEEEEEecC-HHHHHHHHHhCCcEECC-----EEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR-NYGFVHIDS-PDINKCIKELNGMMVDG-----KPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~~-g~afV~f~~-~~a~~Ai~~l~g~~~~g-----~~l~v~~a~~ 114 (346)
...++|||+|||+++++++|+++|++||.|.+|.|++ |||||+|.+ ++|++||+.||+..|+| +.|+|+++.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 5578999999999999999999999999999999996 999999999 99999999999999999 9999999988
Q ss_pred cC
Q psy16419 115 IS 116 (346)
Q Consensus 115 ~~ 116 (346)
+.
T Consensus 93 ~~ 94 (108)
T 1x4c_A 93 RS 94 (108)
T ss_dssp CS
T ss_pred CC
Confidence 33
No 47
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=123.77 Aligned_cols=74 Identities=41% Similarity=0.707 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEECCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
..+.++|||+|||..+++++|+++|++||.|.++.++++||||+|.+ ++|++|+..|||..++|++|+|+++.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 35678999999999999999999999999999999999999999999 999999999999999999999999988
No 48
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.72 E-value=2.2e-18 Score=139.73 Aligned_cols=111 Identities=20% Similarity=0.334 Sum_probs=72.1
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE----
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---- 77 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~---- 77 (346)
+|.+|++...+.+|++.++|....|+.- .....+ .....+.++|||+|||..+++++|+++|++||.|.+|.|+
T Consensus 7 ~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~-~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~ 84 (135)
T 2lea_A 7 HHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY 84 (135)
T ss_dssp -----------------------------CCSCCS-CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSS
T ss_pred ccccccCCCchhhhhhhccCCCCCCCCC-CCcCCC-CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC
Confidence 6889999999999999999877666532 222222 1223557899999999999999999999999999999987
Q ss_pred ----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 78 ----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 78 ----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+|||||+|.+ ++|++|+..|||..|+|++|+|+++++
T Consensus 85 ~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 85 TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp SSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 6799999999 999999999999999999999999988
No 49
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=127.14 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=69.6
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCC--cEECCEEEEEEEee
Q psy16419 40 PNTPTTKVFVGNLSD-NTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNG--MMVDGKPMKVVVAG 113 (346)
Q Consensus 40 ~~~~~~~lfV~nLp~-~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g--~~~~g~~l~v~~a~ 113 (346)
...+.++|||+|||+ .+++++|+++|++||.|.+|.|+ ++||||+|++ ++|.+|++.||+ ..|.|++|+|.+++
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 345789999999999 99999999999999999999998 7999999999 999999999886 46999999999998
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
.
T Consensus 91 ~ 91 (102)
T 1x4d_A 91 K 91 (102)
T ss_dssp C
T ss_pred C
Confidence 7
No 50
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.72 E-value=2.7e-17 Score=128.42 Aligned_cols=90 Identities=26% Similarity=0.569 Sum_probs=78.8
Q ss_pred CCeeeEEeecCCC--CCCCCCCcEEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEECCEEEEEecC-HHHHHHHHHhCCc
Q psy16419 25 NEKPLKIEAATSR--KGPNTPTTKVFVGNLSDN-TRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGM 100 (346)
Q Consensus 25 ~g~~i~v~~~~~~--~~~~~~~~~lfV~nLp~~-~~e~~L~~~F~~~G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~g~ 100 (346)
.|.+|.+..+... ..+....++|||+|||+. +++++|+++|++||.|.+|.|.+|||||+|.+ ++|++|+..||+.
T Consensus 6 ~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~ 85 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGR 85 (110)
T ss_dssp CSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTC
T ss_pred CCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCC
Confidence 4566666655432 233355689999999999 99999999999999999999999999999999 9999999999999
Q ss_pred EECCEEEEEEEeec
Q psy16419 101 MVDGKPMKVVVAGF 114 (346)
Q Consensus 101 ~~~g~~l~v~~a~~ 114 (346)
.++|+.|+|+++++
T Consensus 86 ~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 86 VLAGQTLDINMAGE 99 (110)
T ss_dssp EETTEECCEEESCC
T ss_pred EECCeEEEEEECCC
Confidence 99999999999986
No 51
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.72 E-value=9.2e-18 Score=132.06 Aligned_cols=73 Identities=19% Similarity=0.344 Sum_probs=69.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
...++|||+|||..+++++|+++|++||.|.+|.++ +|||||+|.+ ++|.+|+..|||..++|+.|.|.++.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 457899999999999999999999999999999997 6899999999 999999999999999999999999887
No 52
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.7e-17 Score=123.28 Aligned_cols=75 Identities=29% Similarity=0.516 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCC--CCeEEEEEECCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeeccC
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPY--GTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFIS 116 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~--G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 116 (346)
.+.++|||+|||+.+++++|+++|++| |.|.++.+.+|||||+|.+ ++|.+|+..|||..++|++|+|++++++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 567899999999999999999999999 9999999999999999999 99999999999999999999999998833
No 53
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=127.89 Aligned_cols=73 Identities=18% Similarity=0.393 Sum_probs=69.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhC--CcEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELN--GMMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~--g~~~~g~~l~v~~a~~ 114 (346)
.+.++|||+|||+++++++|+++|++||.|.+|.|+ ||||||+|++ ++|.+|++.|+ +..++|++|+|.++++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 568999999999999999999999999999999999 8999999999 99999999886 4799999999999987
No 54
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.71 E-value=4.8e-17 Score=126.99 Aligned_cols=73 Identities=23% Similarity=0.297 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.+.++|||+|||+.+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|++|++.|||..++|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457899999999999999999999999999999987 6899999999 9999999999999999999999998
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 76
No 55
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=5.6e-17 Score=123.69 Aligned_cols=73 Identities=25% Similarity=0.519 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEECCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSD-NTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~-~~~e~~L~~~F~~~G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.+.++|||+|||. .+++++|+++|++||.|.++.+.+|||||+|.+ ++|.+|+..|||..++|+.|+|+++++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 5689999999998 999999999999999999999999999999999 999999999999999999999999987
No 56
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.71 E-value=3.8e-17 Score=124.39 Aligned_cols=73 Identities=12% Similarity=0.209 Sum_probs=69.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcE--ECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMM--VDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~--~~g~~l~v~~a~~ 114 (346)
.++++|||+|||+++++++|+++|++||.|.++.++ ||||||+|++ ++|.+|++.|++.. +.|++|.|.+++.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 568899999999999999999999999999999998 8999999999 99999999998874 8899999999987
No 57
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.9e-17 Score=125.18 Aligned_cols=75 Identities=21% Similarity=0.478 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
..+.++|||+|||..+++++|+++|++||.|.+|.|. ++||||+|.+ ++|++|++.||+..|+|+.|+|+++++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 3567899999999999999999999999999999998 6899999999 999999999999999999999999988
Q ss_pred c
Q psy16419 115 I 115 (346)
Q Consensus 115 ~ 115 (346)
+
T Consensus 99 ~ 99 (109)
T 1x4a_A 99 G 99 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 58
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.1e-17 Score=122.40 Aligned_cols=75 Identities=24% Similarity=0.515 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.+.++|||+|||..+++++|+++|++||.|.++.++ +|||||+|.+ ++|.+|++.|||..++|++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 457899999999999999999999999999999998 5799999999 9999999999999999999999999
Q ss_pred eccC
Q psy16419 113 GFIS 116 (346)
Q Consensus 113 ~~~~ 116 (346)
.++.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 8843
No 59
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=123.18 Aligned_cols=75 Identities=24% Similarity=0.434 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
..+.++|||+|||..+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|+..|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3668999999999999999999999999999999997 5799999999 999999999999999999999999
Q ss_pred eecc
Q psy16419 112 AGFI 115 (346)
Q Consensus 112 a~~~ 115 (346)
+.++
T Consensus 92 a~~~ 95 (103)
T 2cq0_A 92 AKPS 95 (103)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9883
No 60
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=122.40 Aligned_cols=74 Identities=15% Similarity=0.303 Sum_probs=69.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHh--CCcEECCEEEEEEEeec
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKEL--NGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l--~g~~~~g~~l~v~~a~~ 114 (346)
..+.++|||+|||+.+++++|+++|++||.|.+|.|+ ||||||+|.+ ++|.+|++.| ++..+.|++|.|.+++.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 3568899999999999999999999999999999988 7999999999 9999999976 57889999999999987
No 61
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.6e-17 Score=125.22 Aligned_cols=76 Identities=25% Similarity=0.521 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEECCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeeccCC
Q psy16419 42 TPTTKVFVGNLSD-NTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFISS 117 (346)
Q Consensus 42 ~~~~~lfV~nLp~-~~~e~~L~~~F~~~G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 117 (346)
.+.++|||+|||+ .+++++|+++|++||.|.++.+.+|||||+|.+ ++|.+|+..|||..+.|++|+|++++++.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 5689999999998 999999999999999999999999999999999 999999999999999999999999988433
No 62
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2e-16 Score=121.83 Aligned_cols=74 Identities=27% Similarity=0.449 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
....++|||+|||+.+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|+..||+..+.|++|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 3568999999999999999999999999999999998 5899999999 99999999999999999999999998
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
+
T Consensus 92 ~ 92 (103)
T 2cqi_A 92 T 92 (103)
T ss_dssp C
T ss_pred C
Confidence 8
No 63
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=121.51 Aligned_cols=75 Identities=23% Similarity=0.429 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.+.++|||+|||..+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|+..|||..++|++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 567899999999999999999999999999999987 5899999999 9999999999999999999999999
Q ss_pred eccC
Q psy16419 113 GFIS 116 (346)
Q Consensus 113 ~~~~ 116 (346)
.++.
T Consensus 86 ~~~~ 89 (99)
T 1whw_A 86 TIKK 89 (99)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8843
No 64
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.6e-16 Score=120.42 Aligned_cols=75 Identities=24% Similarity=0.616 Sum_probs=71.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 40 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.....++|||+|||..+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|+..||+..|+|+.|+|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 34668999999999999999999999999999999998 7899999999 9999999999999999999999999
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
.+
T Consensus 91 ~~ 92 (103)
T 2cq3_A 91 TA 92 (103)
T ss_dssp CS
T ss_pred cc
Confidence 88
No 65
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=121.20 Aligned_cols=74 Identities=19% Similarity=0.242 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HhhcCCCCeEEEEEE-----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEE
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVR----ELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVV 110 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~----~~F~~~G~v~~~~i~-----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~ 110 (346)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.|+ ++||||+|.+ ++|++|++.|||..++|++|+|+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3567899999999999999999 999999999999998 8999999999 99999999999999999999999
Q ss_pred Eeec
Q psy16419 111 VAGF 114 (346)
Q Consensus 111 ~a~~ 114 (346)
++++
T Consensus 86 ~a~~ 89 (96)
T 2dgx_A 86 LATG 89 (96)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 9987
No 66
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=118.90 Aligned_cols=73 Identities=26% Similarity=0.531 Sum_probs=67.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.+.++|||+|||..+++++|+++|++||.|.++.++ +|||||+|.+ ++|.+|++.|||..++|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 457899999999999999999999999999999997 5899999999 9999999999999999999999999
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
++
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 87
No 67
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.2e-17 Score=122.31 Aligned_cols=74 Identities=22% Similarity=0.472 Sum_probs=69.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEE-EEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC-DIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~-~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
.+.++|||+|||..+++++|+++|++||.|.++ .|+ +|||||+|.+ ++|++|+..|||..++|++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999998 886 5899999999 999999999999999999999999
Q ss_pred eecc
Q psy16419 112 AGFI 115 (346)
Q Consensus 112 a~~~ 115 (346)
+.++
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 9883
No 68
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.68 E-value=1.5e-16 Score=117.93 Aligned_cols=72 Identities=24% Similarity=0.521 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.+.++|||+|||+++++++|+++|++||.|.++.++ +|||||+|.+ ++|.+|++.|||..++|++|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 467899999999999999999999999999999885 7999999999 9999999999999999999999997
Q ss_pred e
Q psy16419 113 G 113 (346)
Q Consensus 113 ~ 113 (346)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 69
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.68 E-value=1.8e-16 Score=116.96 Aligned_cols=71 Identities=27% Similarity=0.556 Sum_probs=68.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+++|||+|||.++++++|+++|++||.|.++.++ +|||||+|.+ ++|.+|+..|||..++|++|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999987 6899999999 999999999999999999999999987
No 70
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=122.09 Aligned_cols=75 Identities=29% Similarity=0.589 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
..+.++|||+|||+.+++++|+++|++||.|.+|.|. +|||||+|.+ ++|.+|+..|||..++|++|.|+++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 3568999999999999999999999999999999998 6899999999 99999999999999999999999998
Q ss_pred cc
Q psy16419 114 FI 115 (346)
Q Consensus 114 ~~ 115 (346)
++
T Consensus 92 ~~ 93 (103)
T 2d9p_A 92 RK 93 (103)
T ss_dssp SC
T ss_pred cc
Confidence 83
No 71
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=1.3e-16 Score=124.16 Aligned_cols=74 Identities=26% Similarity=0.558 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEECCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
....++|||+|||..+++++|+++|++||.|.+|.+.+|||||+|.+ ++|++|+..|||..++|+.|.|+++++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 36689999999999999999999999999999999999999999999 999999999999999999999999987
No 72
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=117.46 Aligned_cols=72 Identities=19% Similarity=0.455 Sum_probs=68.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHh-CCcEECCEEEEEEEee
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKEL-NGMMVDGKPMKVVVAG 113 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l-~g~~~~g~~l~v~~a~ 113 (346)
...++|||+|||..+++++|+++|++||.|.++.++ +|||||+|.+ ++|.+|+..| ++..++|++|+|++++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 567899999999999999999999999999999999 7999999999 9999999999 9999999999999974
No 73
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2e-16 Score=120.97 Aligned_cols=74 Identities=31% Similarity=0.524 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
..+.++|||+|||..+++++|+++|++||.|.+|.+. +|||||+|.+ ++|.+|++.|||..++|++|+|+++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 3567899999999999999999999999999999999 7999999999 999999999999999999999999988
No 74
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=122.19 Aligned_cols=74 Identities=23% Similarity=0.501 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.+.++|||+|||..+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|++|++.||+..|+|++|+|+++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 567899999999999999999999999999999986 6899999999 9999999999999999999999999
Q ss_pred ecc
Q psy16419 113 GFI 115 (346)
Q Consensus 113 ~~~ 115 (346)
+++
T Consensus 90 ~~~ 92 (102)
T 2cqb_A 90 KPM 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 883
No 75
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=125.29 Aligned_cols=75 Identities=27% Similarity=0.488 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
.+.++|||+|||.++++++|+++|++||.|.+|.|. +|||||+|.+ ++|++|+..|||..++|+.|+|++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 457899999999999999999999999999999998 4999999999 99999999999999999999999998
Q ss_pred ccC
Q psy16419 114 FIS 116 (346)
Q Consensus 114 ~~~ 116 (346)
++.
T Consensus 85 ~~~ 87 (116)
T 2fy1_A 85 KPS 87 (116)
T ss_dssp CSS
T ss_pred CCC
Confidence 843
No 76
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=122.85 Aligned_cols=76 Identities=32% Similarity=0.526 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
....++|||+|||..+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|+..||+..|+|++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3668999999999999999999999999999999987 5899999999 999999999999999999999999
Q ss_pred eeccC
Q psy16419 112 AGFIS 116 (346)
Q Consensus 112 a~~~~ 116 (346)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 98843
No 77
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=2.2e-16 Score=131.11 Aligned_cols=77 Identities=22% Similarity=0.304 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.+.++|||+|||..+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|++|++.||+..|+|++|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 567999999999999999999999999999999996 5899999999 9999999999999999999999999
Q ss_pred eccCCC
Q psy16419 113 GFISSI 118 (346)
Q Consensus 113 ~~~~~~ 118 (346)
.+....
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 884443
No 78
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3e-16 Score=120.18 Aligned_cols=74 Identities=19% Similarity=0.401 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
..+.++|||+|||..+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|++.|||..++|++|+|+++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 3567899999999999999999999999999999998 4899999999 9999999999999999999999999
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
++
T Consensus 94 ~~ 95 (100)
T 2do4_A 94 NS 95 (100)
T ss_dssp CC
T ss_pred CC
Confidence 88
No 79
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.68 E-value=6e-16 Score=121.62 Aligned_cols=76 Identities=25% Similarity=0.529 Sum_probs=71.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEE
Q psy16419 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVV 110 (346)
Q Consensus 40 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~ 110 (346)
...+.++|||+|||..+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|++|++.|||..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34678999999999999999999999999999999997 5799999999 99999999999999999999999
Q ss_pred Eeecc
Q psy16419 111 VAGFI 115 (346)
Q Consensus 111 ~a~~~ 115 (346)
++.++
T Consensus 91 ~a~~~ 95 (115)
T 2dgo_A 91 WATRK 95 (115)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 99883
No 80
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.1e-16 Score=121.93 Aligned_cols=74 Identities=12% Similarity=0.247 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCc--EECCEEEEEEEeecc
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGM--MVDGKPMKVVVAGFI 115 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~--~~~g~~l~v~~a~~~ 115 (346)
.+.++|||+|||+.+++++|+++|++||.|.+|.|+ ||||||+|.+ ++|.+|++.|++. .++|++|+|.+++.+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 567899999999999999999999999999999988 8999999999 9999999988654 589999999999873
No 81
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.2e-16 Score=119.79 Aligned_cols=73 Identities=26% Similarity=0.532 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.+.++|||+|||..+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|++ ||+..++|++|+|+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 567899999999999999999999999999999997 6899999999 99999998 9999999999999999
Q ss_pred ecc
Q psy16419 113 GFI 115 (346)
Q Consensus 113 ~~~ 115 (346)
.++
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 883
No 82
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=121.05 Aligned_cols=73 Identities=22% Similarity=0.445 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEEC--CEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVD--GKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~--g~~l~v~~a~~ 114 (346)
.+.++|||+|||..+++++|+++|++||.|.++.+. +|||||+|.+ ++|++|++.||+..+. |++|+|+++++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 457899999999999999999999999999999998 7899999999 9999999999999999 99999999988
No 83
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=121.87 Aligned_cols=73 Identities=27% Similarity=0.478 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.+.++|||+|||..+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|++|+..|||..++|+.|+|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 567999999999999999999999999999999987 5899999999 9999999999999999999999999
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
++
T Consensus 91 ~~ 92 (103)
T 2dnm_A 91 RY 92 (103)
T ss_dssp SS
T ss_pred Cc
Confidence 87
No 84
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=120.61 Aligned_cols=73 Identities=26% Similarity=0.374 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCC-eEEEEEE-CCEEEEEecC-HHHHHHHHHhCC-cEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGT-VVECDIV-RNYGFVHIDS-PDINKCIKELNG-MMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~-v~~~~i~-~g~afV~f~~-~~a~~Ai~~l~g-~~~~g~~l~v~~a~~ 114 (346)
...++|||+|||.++++++|+++|++||. |..+.+. +|||||+|.+ ++|++|++.||| ..++|++|+|+++.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 45789999999999999999999999999 6666666 9999999999 999999999999 999999999999988
No 85
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.67 E-value=3.2e-16 Score=121.07 Aligned_cols=74 Identities=27% Similarity=0.498 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECC---EEEEE
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDG---KPMKV 109 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g---~~l~v 109 (346)
....++|||+|||..+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|++.|||..+.| ++|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 3568999999999999999999999999999999998 5899999999 99999999999999988 99999
Q ss_pred EEeec
Q psy16419 110 VVAGF 114 (346)
Q Consensus 110 ~~a~~ 114 (346)
+++.+
T Consensus 92 ~~a~~ 96 (105)
T 2dnh_A 92 KFADT 96 (105)
T ss_dssp EESCS
T ss_pred EECcc
Confidence 99988
No 86
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.4e-16 Score=118.34 Aligned_cols=72 Identities=22% Similarity=0.433 Sum_probs=68.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.+.++|||+|||..+++++|+++|++||.|.++.++ +|||||+|.+ ++|.+|++.||+..++|++|+|+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 567899999999999999999999999999999997 5899999999 9999999999999999999999997
Q ss_pred e
Q psy16419 113 G 113 (346)
Q Consensus 113 ~ 113 (346)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 87
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.7e-16 Score=119.15 Aligned_cols=74 Identities=30% Similarity=0.482 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
..+.++|||+|||..+++++|+++|++||.|.++.++ +|||||+|.+ ++|.+|+..|||..++|++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3567899999999999999999999999999999987 5799999999 999999999999999999999999
Q ss_pred eec
Q psy16419 112 AGF 114 (346)
Q Consensus 112 a~~ 114 (346)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 875
No 88
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.7e-17 Score=126.38 Aligned_cols=73 Identities=18% Similarity=0.400 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCC--cEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNG--MMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g--~~~~g~~l~v~~a~~ 114 (346)
.++++|||+|||+++++++|+++|++||.|.+|.|+ ||||||+|++ ++|.+|++.|++ ..+.|++|+|.++++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 567899999999999999999999999999999999 8999999999 999999998874 689999999999987
No 89
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.67 E-value=3.1e-16 Score=127.48 Aligned_cols=76 Identities=29% Similarity=0.481 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
...++|||+|||.++++++|+++|+.||.|.+|.|+ +|||||+|.+ ++|.+|++.|||..|+|+.|+|+++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 557899999999999999999999999999999987 6899999999 9999999999999999999999999
Q ss_pred eccCC
Q psy16419 113 GFISS 117 (346)
Q Consensus 113 ~~~~~ 117 (346)
+++..
T Consensus 120 ~~~~~ 124 (139)
T 1u6f_A 120 ASGHQ 124 (139)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 88443
No 90
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=121.82 Aligned_cols=75 Identities=35% Similarity=0.618 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.+.++|||+|||+.+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|++.||+..|+|++|+|+++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 567899999999999999999999999999999997 5799999999 9999999999999999999999999
Q ss_pred eccC
Q psy16419 113 GFIS 116 (346)
Q Consensus 113 ~~~~ 116 (346)
+++.
T Consensus 90 ~~~~ 93 (102)
T 1x5s_A 90 GKSS 93 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9833
No 91
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.67 E-value=2.5e-16 Score=123.84 Aligned_cols=75 Identities=23% Similarity=0.488 Sum_probs=70.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
..+.++|||+|||.++++++|+++|++||.|.+|.|+ +|||||+|.+ ++|++|++.||+..|+|++|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3567899999999999999999999999999999987 4799999999 999999999999999999999999
Q ss_pred eecc
Q psy16419 112 AGFI 115 (346)
Q Consensus 112 a~~~ 115 (346)
++++
T Consensus 102 a~~~ 105 (115)
T 2cpz_A 102 KRSK 105 (115)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9883
No 92
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.67 E-value=3.7e-17 Score=123.22 Aligned_cols=71 Identities=14% Similarity=0.298 Sum_probs=65.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEE--------CCEEEEEecC-HHHHHHHHHh-CCcEECCEEEEEEEe
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPYG-TVVECDIV--------RNYGFVHIDS-PDINKCIKEL-NGMMVDGKPMKVVVA 112 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~G-~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l-~g~~~~g~~l~v~~a 112 (346)
+++|||+|||+++|+++|+++|++|| .|.+|+|+ ||||||+|.+ ++|.+|++.+ ++..++|++|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 79999886 7999999999 9999999987 456899999999999
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
.+
T Consensus 81 ~~ 82 (91)
T 2lxi_A 81 DP 82 (91)
T ss_dssp CS
T ss_pred CC
Confidence 88
No 93
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.3e-16 Score=121.93 Aligned_cols=73 Identities=21% Similarity=0.475 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
...++|||+|||..+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|+..|||..++|++|+|.++++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 457899999999999999999999999999999999 8999999999 999999999999999999999999988
No 94
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.67 E-value=2.7e-16 Score=119.54 Aligned_cols=72 Identities=17% Similarity=0.428 Sum_probs=69.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
++++|||+|||..+++++|+++|++||.|.++.|+ +|||||+|.+ ++|.+|++.|||..++|+.|+|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999987 6899999999 99999999999999999999999998
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
+
T Consensus 81 ~ 81 (96)
T 2x1f_A 81 N 81 (96)
T ss_dssp C
T ss_pred C
Confidence 8
No 95
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.8e-16 Score=119.07 Aligned_cols=74 Identities=26% Similarity=0.515 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-----------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-----------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v 109 (346)
.+.++|||+|||+++++++|+++|++||.|.+|.|+ +|||||+|.+ ++|++|+..|||..++|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 457899999999999999999999999999999887 3699999999 9999999999999999999999
Q ss_pred EEeecc
Q psy16419 110 VVAGFI 115 (346)
Q Consensus 110 ~~a~~~ 115 (346)
+++.++
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 999883
No 96
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.7e-16 Score=121.56 Aligned_cols=75 Identities=31% Similarity=0.556 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
....++|||+|||+.+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|++|+..|++ .|+|+.|+|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 4568999999999999999999999999999999997 5899999999 999999999998 89999999999
Q ss_pred eeccC
Q psy16419 112 AGFIS 116 (346)
Q Consensus 112 a~~~~ 116 (346)
+..+.
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 97743
No 97
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.66 E-value=3.8e-16 Score=121.77 Aligned_cols=73 Identities=19% Similarity=0.360 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.+.++|||+|||..+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|+..|||..++|++|+|+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 567899999999999999999999999999999987 5899999999 9999999999999999999999999
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
.+
T Consensus 104 ~~ 105 (110)
T 1oo0_B 104 FV 105 (110)
T ss_dssp EE
T ss_pred cc
Confidence 88
No 98
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.66 E-value=5e-16 Score=115.85 Aligned_cols=72 Identities=25% Similarity=0.531 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~---------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
..++|||+|||.++++++|+++|++||.|.++.++ +|||||+|.+ ++|.+|+..|||..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 46899999999999999999999999999999884 7899999999 9999999999999999999999999
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
.+
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 87
No 99
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=7.4e-16 Score=118.66 Aligned_cols=74 Identities=20% Similarity=0.468 Sum_probs=68.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEE
Q psy16419 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVV 110 (346)
Q Consensus 40 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~ 110 (346)
+..+.++|||+|||+.+++++|+++|++|| |.+|.|+ +|||||+|.+ ++|.+|+ .||+..|+|++|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345689999999999999999999999997 9999987 5799999999 9999999 899999999999999
Q ss_pred Eeecc
Q psy16419 111 VAGFI 115 (346)
Q Consensus 111 ~a~~~ 115 (346)
++.++
T Consensus 89 ~a~~~ 93 (103)
T 2dng_A 89 IAEGR 93 (103)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99883
No 100
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=120.81 Aligned_cols=73 Identities=22% Similarity=0.425 Sum_probs=66.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCC--eEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCc----EECCEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGT--VVECDIV--------RNYGFVHIDS-PDINKCIKELNGM----MVDGKP 106 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~--v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~----~~~g~~ 106 (346)
....+|||+|||+.+|+++|+++|++||. |.+|+++ ||||||+|.+ ++|.+|++.|||. .++|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45789999999999999999999999996 5677776 7899999999 9999999999996 599999
Q ss_pred EEEEEeec
Q psy16419 107 MKVVVAGF 114 (346)
Q Consensus 107 l~v~~a~~ 114 (346)
|.|++|+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999875
No 101
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.66 E-value=2.8e-16 Score=118.37 Aligned_cols=73 Identities=23% Similarity=0.392 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.+.++|||+|||..+++++|+++|++||.|.++.|+ +|||||+|.+ ++|++|+..||+..++|+.|+|+++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 567899999999999999999999999999999987 6899999999 999999999999999999999999988
No 102
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.65 E-value=5.2e-16 Score=122.53 Aligned_cols=73 Identities=25% Similarity=0.530 Sum_probs=68.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
..+.++|||+|||+++++++|+++|++||.|.+|.|+ +|||||+|.+ ++|++|++.|||..++|+.|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3567999999999999999999999999999999997 6899999999 999999999999999999999998
Q ss_pred ee
Q psy16419 112 AG 113 (346)
Q Consensus 112 a~ 113 (346)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 103
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.65 E-value=1.7e-16 Score=123.84 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEE----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYG-TVVECDIV----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G-~v~~~~i~----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
...++|||+|||+++++++|+++|++|| .|..+.|. +|||||+|.+ ++|++|++.|||..++|+.|+|+++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 3478999999999999999999999999 89999886 8999999999 999999999999999999999999876
No 104
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-16 Score=123.93 Aligned_cols=74 Identities=16% Similarity=0.298 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhC--CcEECCEEEEEEEeecc
Q psy16419 42 TPTTKVFVGNLSDN-TRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELN--GMMVDGKPMKVVVAGFI 115 (346)
Q Consensus 42 ~~~~~lfV~nLp~~-~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~--g~~~~g~~l~v~~a~~~ 115 (346)
.++++|||+|||++ +++++|+++|++||.|.+|.|+ ||||||+|.+ ++|.+|++.|+ +..|.|++|+|.+++.+
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccc
Confidence 56889999999998 9999999999999999999998 7999999999 99999999885 45699999999999873
No 105
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.9e-16 Score=121.65 Aligned_cols=74 Identities=24% Similarity=0.622 Sum_probs=70.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
....++|||+|||..+++++|+++|++||.|.+|.+. +|||||+|.+ ++|++|+..|||..++|++|+|++++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 3668999999999999999999999999999999998 7899999999 99999999999999999999999988
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
+
T Consensus 106 ~ 106 (109)
T 2err_A 106 A 106 (109)
T ss_dssp C
T ss_pred C
Confidence 7
No 106
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.65 E-value=4.1e-16 Score=118.18 Aligned_cols=73 Identities=30% Similarity=0.540 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
...++|||+|||+.+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|+..||+..++|++|+|++++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 557899999999999999999999999999999997 5899999999 99999999999999999999999986
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 107
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=8e-16 Score=118.68 Aligned_cols=74 Identities=20% Similarity=0.454 Sum_probs=68.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEE
Q psy16419 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109 (346)
Q Consensus 40 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~---------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v 109 (346)
+..+.++|||+|||+.+++++|+++|++|| |.+|.|+ +|||||+|.+ ++|++|+ .||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 335679999999999999999999999999 9999987 5799999999 9999999 99999999999999
Q ss_pred EEeecc
Q psy16419 110 VVAGFI 115 (346)
Q Consensus 110 ~~a~~~ 115 (346)
+++.++
T Consensus 89 ~~a~~~ 94 (104)
T 1wi8_A 89 DVADQA 94 (104)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 999883
No 108
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.2e-16 Score=121.19 Aligned_cols=73 Identities=16% Similarity=0.373 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
...++|||+|||..+++++|+++|++||.|.++.+. +|||||+|.+ ++|.+|+..|||..++|+.|+|+++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 447899999999999999999999999999999998 8999999999 999999999999999999999999876
No 109
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.5e-16 Score=120.16 Aligned_cols=74 Identities=24% Similarity=0.441 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhC------CcEECCEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELN------GMMVDGKP 106 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~------g~~~~g~~ 106 (346)
.+.++|||+|||+.+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|+..|| +..++|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 567899999999999999999999999999999987 6899999999 99999999999 99999999
Q ss_pred EEEEEeecc
Q psy16419 107 MKVVVAGFI 115 (346)
Q Consensus 107 l~v~~a~~~ 115 (346)
|+|+++.++
T Consensus 93 l~v~~a~~~ 101 (111)
T 1x4h_A 93 LKVDLAVTR 101 (111)
T ss_dssp EEEECCCCC
T ss_pred EEEEECCCC
Confidence 999999883
No 110
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.9e-16 Score=120.79 Aligned_cols=73 Identities=18% Similarity=0.387 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.+.++|||+|||..+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|+..|||..++|+.|+|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 567899999999999999999999999999999997 6899999999 9999999999999999999999999
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
.+
T Consensus 101 ~~ 102 (106)
T 1p27_B 101 FV 102 (106)
T ss_dssp EE
T ss_pred cC
Confidence 88
No 111
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.65 E-value=3.6e-16 Score=124.95 Aligned_cols=76 Identities=17% Similarity=0.367 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
..+.++|||+|||+.+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|++.|||..|+|+.|.|++
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3568899999999999999999999999999999987 7899999999 999999999999999999999999
Q ss_pred eeccC
Q psy16419 112 AGFIS 116 (346)
Q Consensus 112 a~~~~ 116 (346)
+.++.
T Consensus 99 a~~~~ 103 (126)
T 3ex7_B 99 CFVRG 103 (126)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98843
No 112
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.7e-16 Score=120.32 Aligned_cols=73 Identities=27% Similarity=0.389 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHH---HhhcCCCCeEEEEEE-----------CCEEEEEecC-HHHHHHHHHhCCcEECCEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVR---ELFVPYGTVVECDIV-----------RNYGFVHIDS-PDINKCIKELNGMMVDGKP 106 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~---~~F~~~G~v~~~~i~-----------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~ 106 (346)
...++|||+|||+.+++++|+ ++|++||.|.+|.|+ +|||||+|.+ ++|++|++.|||..|+|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 457899999999999999999 999999999999998 2699999999 9999999999999999999
Q ss_pred EEEEEeec
Q psy16419 107 MKVVVAGF 114 (346)
Q Consensus 107 l~v~~a~~ 114 (346)
|+|+++.+
T Consensus 93 l~V~~a~~ 100 (111)
T 2cpi_A 93 LKASLGTT 100 (111)
T ss_dssp EEEESCCC
T ss_pred EEEEeccc
Confidence 99999988
No 113
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.4e-15 Score=114.46 Aligned_cols=72 Identities=24% Similarity=0.439 Sum_probs=68.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
..+.++|||+|| .+++++|+++|++||.|.+|.|. +|||||+|.+ ++|.+|+..|||..++|++|+|.++.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 356789999996 89999999999999999999998 8999999999 999999999999999999999999988
No 114
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.9e-15 Score=118.43 Aligned_cols=73 Identities=29% Similarity=0.428 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
...++|||+|||..+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|++|+..||+..|+|+.|+|+++.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 567899999999999999999999999999999987 5899999999 99999999999999999999999987
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
.
T Consensus 93 ~ 93 (114)
T 2do0_A 93 R 93 (114)
T ss_dssp C
T ss_pred c
Confidence 6
No 115
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.5e-16 Score=120.65 Aligned_cols=75 Identities=19% Similarity=0.345 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeE--------EEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEEC
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVV--------ECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVD 103 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~--------~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~ 103 (346)
..+.++|||+|||..+++++|+++|++||.|. .|.|+ +|||||+|.+ ++|.+|+..|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 35689999999999999999999999999998 57776 6899999999 9999999999999999
Q ss_pred CEEEEEEEeecc
Q psy16419 104 GKPMKVVVAGFI 115 (346)
Q Consensus 104 g~~l~v~~a~~~ 115 (346)
|+.|+|++++++
T Consensus 92 g~~l~V~~a~~~ 103 (113)
T 2cpe_A 92 GSKLKVSLARKK 103 (113)
T ss_dssp TEECEEECSSCC
T ss_pred CCEEEEEECCCC
Confidence 999999999883
No 116
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.64 E-value=1e-15 Score=118.64 Aligned_cols=73 Identities=27% Similarity=0.488 Sum_probs=69.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
..+.++|||+|||+.+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|++.|||..++|+.|+|+++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3568999999999999999999999999999999988 6899999999 9999999999999999999999997
Q ss_pred e
Q psy16419 113 G 113 (346)
Q Consensus 113 ~ 113 (346)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 117
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.64 E-value=2.7e-16 Score=123.79 Aligned_cols=73 Identities=19% Similarity=0.329 Sum_probs=65.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEC-CEEEEEecC-HHHHHHHHHhCCcEECCEE-----EEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR-NYGFVHIDS-PDINKCIKELNGMMVDGKP-----MKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~~-g~afV~f~~-~~a~~Ai~~l~g~~~~g~~-----l~v~~a~~ 114 (346)
...++|||+|||+++++++|+++|++||.|.+|.|++ |||||+|.+ ++|++||+.|||..|+|+. |+|..+.+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 3468999999999999999999999999999999996 999999999 9999999999999999988 77777666
No 118
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=8.5e-16 Score=119.04 Aligned_cols=74 Identities=26% Similarity=0.458 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---------CCEEEEEecC-HHHHHHHHHh-CCcEECCEEEEE
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---------RNYGFVHIDS-PDINKCIKEL-NGMMVDGKPMKV 109 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~---------~g~afV~f~~-~~a~~Ai~~l-~g~~~~g~~l~v 109 (346)
....++|||+|||..+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|+..| |+..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 3568999999999999999999999999999999985 5899999999 9999999999 999999999999
Q ss_pred EEeec
Q psy16419 110 VVAGF 114 (346)
Q Consensus 110 ~~a~~ 114 (346)
+++.+
T Consensus 92 ~~a~~ 96 (107)
T 2cph_A 92 EWADS 96 (107)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 99988
No 119
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.64 E-value=6e-16 Score=120.34 Aligned_cols=75 Identities=27% Similarity=0.553 Sum_probs=70.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEE
Q psy16419 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVV 110 (346)
Q Consensus 40 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~ 110 (346)
...+.++|||+|||..+++++|+++|++||.|.++.|+ +|||||+|.+ ++|.+|++.|||..++|++|+|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34668999999999999999999999999999999987 5899999999 99999999999999999999999
Q ss_pred Eeec
Q psy16419 111 VAGF 114 (346)
Q Consensus 111 ~a~~ 114 (346)
++++
T Consensus 102 ~a~~ 105 (108)
T 2jrs_A 102 HVTE 105 (108)
T ss_dssp CSCS
T ss_pred Eccc
Confidence 9887
No 120
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.64 E-value=4.6e-16 Score=120.38 Aligned_cols=76 Identities=18% Similarity=0.353 Sum_probs=70.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEE---CCEEE
Q psy16419 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMV---DGKPM 107 (346)
Q Consensus 40 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~---~g~~l 107 (346)
...+.++|||+|||..+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|++.||+..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 34668999999999999999999999999999999987 5899999999 999999999999988 89999
Q ss_pred EEEEeecc
Q psy16419 108 KVVVAGFI 115 (346)
Q Consensus 108 ~v~~a~~~ 115 (346)
+|+++.++
T Consensus 89 ~v~~a~~~ 96 (106)
T 2dgp_A 89 QVKPADSE 96 (106)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99999883
No 121
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.4e-16 Score=122.41 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
..++|||+|||+.+++++|+++|++||.|.+|.|. ++||||+|.+ ++|.+|+..|||..++|++|.|+|+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 46899999999999999999999999999999987 8999999999 999999999999999999999999987
No 122
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.1e-16 Score=119.16 Aligned_cols=73 Identities=22% Similarity=0.460 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeE-EEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEE----E
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVV-ECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKP----M 107 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~-~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~----l 107 (346)
...++|||+|||+.+++++|+++|++||.|. ++.|+ +|||||+|.+ ++|++|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 5689999999999999999999999999999 99887 4899999999 9999999999999999999 9
Q ss_pred EEEEeec
Q psy16419 108 KVVVAGF 114 (346)
Q Consensus 108 ~v~~a~~ 114 (346)
+|.++++
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 9999987
No 123
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.63 E-value=1.8e-15 Score=112.73 Aligned_cols=70 Identities=29% Similarity=0.593 Sum_probs=65.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.+.++|||+|||+.+++++|+++|++||.|.++.++ +|||||+|.+ ++|.+|++ +++..++|+.|.|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 567899999999999999999999999999999987 6899999999 99999996 5889999999999875
No 124
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.63 E-value=7.5e-16 Score=117.75 Aligned_cols=73 Identities=23% Similarity=0.433 Sum_probs=68.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEE--------EEEE--------CCEEEEEecC-HHHHHHHHHhCCcEEC
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE--------CDIV--------RNYGFVHIDS-PDINKCIKELNGMMVD 103 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~--------~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~ 103 (346)
....++|||+|||.++++++|+++|++||.|.+ +.++ +|||||+|.+ ++|.+|++.|||..++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 356899999999999999999999999999999 8887 5899999999 9999999999999999
Q ss_pred CEEEEEEEee
Q psy16419 104 GKPMKVVVAG 113 (346)
Q Consensus 104 g~~l~v~~a~ 113 (346)
|+.|+|++++
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999874
No 125
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.63 E-value=1.8e-16 Score=121.52 Aligned_cols=73 Identities=21% Similarity=0.242 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCC------CCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECC-E
Q psy16419 42 TPTTKVFVGNLSD------NTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDG-K 105 (346)
Q Consensus 42 ~~~~~lfV~nLp~------~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g-~ 105 (346)
...++|||+|||. .+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|+..|||..++| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 99999999999999999999987 7999999999 99999999999999999 9
Q ss_pred EEEEEEeec
Q psy16419 106 PMKVVVAGF 114 (346)
Q Consensus 106 ~l~v~~a~~ 114 (346)
+|+|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999987
No 126
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.63 E-value=1.1e-15 Score=114.33 Aligned_cols=70 Identities=19% Similarity=0.454 Sum_probs=67.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.++|||+|||+++++++|+++|++||.|.++.+. +|||||+|.+ ++|.+|+ .|||..++|+.|+|+++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 5789999999999999999999999999999987 6799999999 9999999 8999999999999999887
No 127
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2e-15 Score=115.72 Aligned_cols=75 Identities=16% Similarity=0.305 Sum_probs=66.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeecc
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFI 115 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 115 (346)
..+.++|||+|||..+++++|+++|++||.|.-+... +|||||+|.+ ++|++|+..||+..|+|+.|+|++++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 3568999999999999999999999999988322221 7999999999 9999999999999999999999999884
No 128
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-15 Score=116.41 Aligned_cols=77 Identities=21% Similarity=0.293 Sum_probs=66.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 40 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
...+.++|||+|||..+++++|+++|+.|+.|.-+... +|||||+|.+ ++|.+|+..||+..|+|+.|+|++++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 34668999999999999999999999998654433222 5899999999 99999999999999999999999999
Q ss_pred ccC
Q psy16419 114 FIS 116 (346)
Q Consensus 114 ~~~ 116 (346)
++.
T Consensus 91 ~~~ 93 (102)
T 2fc8_A 91 PKG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 843
No 129
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=118.16 Aligned_cols=74 Identities=27% Similarity=0.481 Sum_probs=69.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
..+.++|||+|||+.+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|+.. ++..|+|+.|.|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 3567999999999999999999999999999999998 4899999999 999999998 99999999999999
Q ss_pred eecc
Q psy16419 112 AGFI 115 (346)
Q Consensus 112 a~~~ 115 (346)
+.++
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 9883
No 130
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=3e-16 Score=120.36 Aligned_cols=72 Identities=25% Similarity=0.475 Sum_probs=68.4
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeeccC
Q psy16419 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFIS 116 (346)
Q Consensus 45 ~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~---~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 116 (346)
++|||+|||.++++++|+++|++||.|.++.+. +|||||+|.+ ++|++|++.|||..++|+.|+|++++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 589999999999999999999999999999997 7899999999 99999999999999999999999998833
No 131
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.62 E-value=1.1e-15 Score=116.17 Aligned_cols=73 Identities=19% Similarity=0.505 Sum_probs=69.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HhhcCCCCeEEEEEE-----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVR----ELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~----~~F~~~G~v~~~~i~-----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
.+.++|||+|||..+++++|+ ++|++||.|.+|.+. +|||||+|.+ ++|.+|+..|||..++|++|+|.+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457899999999999999999 999999999999987 7999999999 999999999999999999999999
Q ss_pred eec
Q psy16419 112 AGF 114 (346)
Q Consensus 112 a~~ 114 (346)
+++
T Consensus 86 a~~ 88 (97)
T 1nu4_A 86 AKT 88 (97)
T ss_dssp CSS
T ss_pred ccC
Confidence 987
No 132
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=6.3e-16 Score=117.74 Aligned_cols=72 Identities=21% Similarity=0.434 Sum_probs=67.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
...++|||+|||+.+++++|+++|++||.|. +.++ +|||||+|.+ ++|++|+..|||..++|+.|+|+++++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 5578999999999999999999999999996 5555 8999999999 999999999999999999999999987
No 133
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.1e-16 Score=120.15 Aligned_cols=72 Identities=14% Similarity=0.261 Sum_probs=68.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
...++|||+|||+++++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|+. +++..++|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 456899999999999999999999999999999998 6999999999 99999999 89999999999999976
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 134
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.62 E-value=1.2e-16 Score=120.02 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=63.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCC--CeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 45 TKVFVGNLSDNTRAPEVRELFVPYG--TVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 45 ~~lfV~nLp~~~~e~~L~~~F~~~G--~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
.+|||+|||+++++++|+++|++|| .|.++.++ +|||||+|.+ ++|++|++.|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999887 6899999999 99999999999999999999999998
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
+
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 7
No 135
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=7.5e-16 Score=123.16 Aligned_cols=73 Identities=11% Similarity=0.321 Sum_probs=68.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HhhcCCCCeEEEEEE-----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVR----ELFVPYGTVVECDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~----~~F~~~G~v~~~~i~-----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
.+.++|||+|||+.+++++|+ ++|++||.|.+|.+. ||||||+|.+ ++|.+|+..|||..+.|++|+|.+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 557899999999999999876 699999999999886 7999999999 999999999999999999999999
Q ss_pred eec
Q psy16419 112 AGF 114 (346)
Q Consensus 112 a~~ 114 (346)
++.
T Consensus 107 a~~ 109 (127)
T 2a3j_A 107 SET 109 (127)
T ss_dssp CCC
T ss_pred ccC
Confidence 987
No 136
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=126.63 Aligned_cols=72 Identities=25% Similarity=0.361 Sum_probs=67.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCC--CeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYG--TVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G--~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
..++|||+|||+++++++|+++|++|| .|.+|.|+ +|||||+|.+ ++|.+||..|||..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 99999987 6899999999 999999999999999999999999
Q ss_pred eec
Q psy16419 112 AGF 114 (346)
Q Consensus 112 a~~ 114 (346)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 976
No 137
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=7.2e-16 Score=118.86 Aligned_cols=75 Identities=27% Similarity=0.507 Sum_probs=70.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcC-CCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcE-ECCEEEEEE
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVP-YGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMM-VDGKPMKVV 110 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~-~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~-~~g~~l~v~ 110 (346)
..+.++|||+|||+.+++++|+++|++ ||.|.+|.|+ +|||||+|.+ ++|.+|+..||+.. ++|++|+|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 356789999999999999999999999 9999999997 6899999999 99999999999999 999999999
Q ss_pred Eeecc
Q psy16419 111 VAGFI 115 (346)
Q Consensus 111 ~a~~~ 115 (346)
++.++
T Consensus 86 ~a~~~ 90 (104)
T 2dhg_A 86 VAIPK 90 (104)
T ss_dssp BCCCC
T ss_pred EccCC
Confidence 99873
No 138
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=119.40 Aligned_cols=73 Identities=23% Similarity=0.491 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
..++|||+|||..+++++|+++|++||.|..|.|+ +|||||+|.+ ++|.+|+.. ++..|+|+.|+|+++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 46899999999999999999999999999999998 5899999999 999999997 9999999999999998
Q ss_pred ccC
Q psy16419 114 FIS 116 (346)
Q Consensus 114 ~~~ 116 (346)
++.
T Consensus 105 ~~~ 107 (116)
T 1x4b_A 105 ARE 107 (116)
T ss_dssp SCC
T ss_pred CCc
Confidence 843
No 139
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=115.97 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=68.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeeccC
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFIS 116 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~---~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 116 (346)
..+.++|||+|||..+++++|+++|++||.|..+... +|||||+|.+ ++|.+|+..|||..++|++|+|+++.++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 3567999999999999999999999999998877221 7999999999 99999999999999999999999998843
No 140
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1e-15 Score=116.66 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=67.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
...++|||+|||+.+++++|+++|++||.|..+.++ +|||||+|.+ ++|++|++.|||..|+|+.|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 456899999999999999999999999999766554 6899999999 9999999999999999999999998
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 141
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3e-16 Score=116.43 Aligned_cols=72 Identities=24% Similarity=0.456 Sum_probs=67.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.+.++|||+|||+.+++++|+++|++||.|.++.|+ +|||||+|.+ ++|.+|++.|||..++|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 457899999999999999999999999999999987 6899999999 9999999999999999999988765
Q ss_pred e
Q psy16419 113 G 113 (346)
Q Consensus 113 ~ 113 (346)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 142
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=7.5e-16 Score=120.99 Aligned_cols=74 Identities=16% Similarity=0.306 Sum_probs=68.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCe----EEEEEE----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTV----VECDIV----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v----~~~~i~----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.+.++|||+|||..+++++|+++|++||.| ..+.+. +|||||+|.+ ++|.+|+..|||..++|++|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 567999999999999999999999999998 566665 7999999999 9999999999999999999999999
Q ss_pred ecc
Q psy16419 113 GFI 115 (346)
Q Consensus 113 ~~~ 115 (346)
.++
T Consensus 103 ~~~ 105 (115)
T 2cpx_A 103 KNK 105 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 883
No 143
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.9e-16 Score=119.68 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=68.5
Q ss_pred CCCcEEEE--cCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEE-----CCEEEEEEE
Q psy16419 42 TPTTKVFV--GNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMV-----DGKPMKVVV 111 (346)
Q Consensus 42 ~~~~~lfV--~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~-----~g~~l~v~~ 111 (346)
.+..+||| +||++.+++++|+++|++||.|.+|.|. ||||||+|.+ ++|++|++.|||..+ .|++|.|.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 56789999 7799999999999999999999999888 8999999999 999999999999998 689999999
Q ss_pred eec
Q psy16419 112 AGF 114 (346)
Q Consensus 112 a~~ 114 (346)
++.
T Consensus 103 a~~ 105 (114)
T 2cq2_A 103 VEK 105 (114)
T ss_dssp ESC
T ss_pred ccc
Confidence 876
No 144
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=118.78 Aligned_cols=71 Identities=21% Similarity=0.382 Sum_probs=67.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
..++|||+|||..+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|+ .|||..|+|+.|+|+++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 35799999999999999999999999999999997 6899999999 9999999 999999999999999998
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
+
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 7
No 145
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=117.83 Aligned_cols=73 Identities=15% Similarity=0.252 Sum_probs=68.7
Q ss_pred CCCcEEEEcCCCCCC------CHHHHHHhhcCCCCeEEEEEE------CCEEEEEecC-HHHHHHHHHhCCcEECCE-EE
Q psy16419 42 TPTTKVFVGNLSDNT------RAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGK-PM 107 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~------~e~~L~~~F~~~G~v~~~~i~------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~-~l 107 (346)
...++|||+|||+.+ ++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|+..|||..++|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 457899999999999 789999999999999999987 6999999999 999999999999999998 99
Q ss_pred EEEEeec
Q psy16419 108 KVVVAGF 114 (346)
Q Consensus 108 ~v~~a~~ 114 (346)
+|.++..
T Consensus 93 ~V~~a~~ 99 (105)
T 2nlw_A 93 RVNLFTD 99 (105)
T ss_dssp EEECSCC
T ss_pred EEEEcch
Confidence 9999876
No 146
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.61 E-value=9.3e-16 Score=123.17 Aligned_cols=74 Identities=30% Similarity=0.473 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
..+.++|||+|||+.+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|++|+..|||..|+|++|+|++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3567899999999999999999999999999999997 6899999999 999999999999999999999999
Q ss_pred eec
Q psy16419 112 AGF 114 (346)
Q Consensus 112 a~~ 114 (346)
+.+
T Consensus 123 a~~ 125 (129)
T 2kxn_B 123 SIT 125 (129)
T ss_dssp CSS
T ss_pred ecC
Confidence 887
No 147
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.61 E-value=1.8e-15 Score=113.10 Aligned_cols=72 Identities=19% Similarity=0.358 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
...++|||+|||+.+++++|+++|++| .|.++.+. +|||||+|.+ ++|++|++.|||..++|++|+|+++..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 346899999999999999999999999 99999887 8999999999 999999999999999999999999876
No 148
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.61 E-value=7e-16 Score=116.87 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=65.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
...++|||+|||+.+++++|+++|++||.|.++.++ +|||||+|.+ ++|++|++.||+..++|++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 346899999999999999999999999999877665 6899999999 9999999999999999999999987
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 149
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.60 E-value=3.1e-15 Score=119.28 Aligned_cols=73 Identities=14% Similarity=0.295 Sum_probs=68.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---CCE-EEEEecC-HHHHHHHHHhCCcEECC--EEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---RNY-GFVHIDS-PDINKCIKELNGMMVDG--KPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~---~g~-afV~f~~-~~a~~Ai~~l~g~~~~g--~~l~v~~a~~ 114 (346)
..-.+|||+||++.+++++|+++|++||.|.+|.|. +|| |||+|.+ ++|.+|++.|||..|.| ++|+|+++++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 345678999999999999999999999999999887 677 9999999 99999999999999988 9999999988
No 150
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6.6e-15 Score=113.23 Aligned_cols=73 Identities=21% Similarity=0.360 Sum_probs=67.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
..+.++|||+|||..+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|+. ++..++|+.|.|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3567899999999999999999999999999999987 5799999999 99999998 47899999999999
Q ss_pred eecc
Q psy16419 112 AGFI 115 (346)
Q Consensus 112 a~~~ 115 (346)
+.++
T Consensus 90 a~~~ 93 (103)
T 2cqg_A 90 PNSK 93 (103)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 9883
No 151
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.60 E-value=3.2e-15 Score=119.05 Aligned_cols=74 Identities=26% Similarity=0.465 Sum_probs=70.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
....++|||+|||..+++++|+++|++||.|.+|.|. +|||||+|.+ ++|.+|+..|||..++|+.|+|+++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 3567899999999999999999999999999999997 6899999999 9999999999999999999999999
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
.+
T Consensus 112 ~~ 113 (124)
T 2kt5_A 112 AS 113 (124)
T ss_dssp CC
T ss_pred CC
Confidence 87
No 152
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.3e-15 Score=115.74 Aligned_cols=72 Identities=11% Similarity=0.154 Sum_probs=65.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
...++|||+|||+++++++|+++|++||.+ +|.|+ +|||||+|.+ ++|++||. +|+..|+|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 557899999999999999999999999955 88887 6899999999 99999995 79999999999999988
Q ss_pred cc
Q psy16419 114 FI 115 (346)
Q Consensus 114 ~~ 115 (346)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 153
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=5.5e-15 Score=111.01 Aligned_cols=71 Identities=23% Similarity=0.309 Sum_probs=67.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
...++|||+|||+.+++++|+++|++| .|.+|.|+ +|||||+|.+ ++|.+|+. ||+..++|+.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 567899999999999999999999999 99999887 6899999999 99999999 99999999999999998
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
+
T Consensus 86 ~ 86 (91)
T 2dgw_A 86 S 86 (91)
T ss_dssp S
T ss_pred c
Confidence 7
No 154
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=1.3e-15 Score=146.73 Aligned_cols=74 Identities=24% Similarity=0.446 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.+.++|||+|||+.+++++|+++|++||.|+.|.|+ +|||||+|.+ ++|.+||..|||..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999987 7899999999 9999999999999999999999999
Q ss_pred ecc
Q psy16419 113 GFI 115 (346)
Q Consensus 113 ~~~ 115 (346)
.++
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 873
No 155
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.60 E-value=2.9e-15 Score=119.24 Aligned_cols=71 Identities=17% Similarity=0.456 Sum_probs=67.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
..++|||+|||.++++++|+++|++||.|.+|.++ +|||||+|.+ ++|.+|+ .|||..|+|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 36899999999999999999999999999999987 6899999999 9999999 799999999999999998
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
+
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 7
No 156
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.59 E-value=4.2e-15 Score=115.71 Aligned_cols=72 Identities=31% Similarity=0.491 Sum_probs=65.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
.+.++|||+|||.++++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|+..+ +..++|+.|+|+++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 567899999999999999999999999999999997 6899999999 9999999976 59999999999999
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
.+
T Consensus 102 ~~ 103 (109)
T 2rs2_A 102 FP 103 (109)
T ss_dssp CC
T ss_pred cC
Confidence 87
No 157
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.7e-15 Score=115.76 Aligned_cols=73 Identities=23% Similarity=0.512 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEE--------CCE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMV--------DGK 105 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~--------~g~ 105 (346)
...++|||+|||+.+++++|+++|++||.|.++.|+ +|||||+|.+ ++|.+|+..|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 567899999999999999999999999999999997 5899999999 999999999999999 578
Q ss_pred EEEEEEeec
Q psy16419 106 PMKVVVAGF 114 (346)
Q Consensus 106 ~l~v~~a~~ 114 (346)
+|.|+++.+
T Consensus 103 ~l~v~~a~p 111 (114)
T 1x5o_A 103 PLLCKFSGP 111 (114)
T ss_dssp CBEEEECCC
T ss_pred ceeEEccCC
Confidence 899999987
No 158
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=8.6e-16 Score=112.94 Aligned_cols=66 Identities=17% Similarity=0.339 Sum_probs=61.8
Q ss_pred CcEEEEcCCCCCC------CHHHHHHhhcCCCCeEEEEEE------CCEEEEEecC-HHHHHHHHHhCCcEECCE-EEEE
Q psy16419 44 TTKVFVGNLSDNT------RAPEVRELFVPYGTVVECDIV------RNYGFVHIDS-PDINKCIKELNGMMVDGK-PMKV 109 (346)
Q Consensus 44 ~~~lfV~nLp~~~------~e~~L~~~F~~~G~v~~~~i~------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~-~l~v 109 (346)
+++|||+|||..+ ++++|+++|++||.|.++.|+ +|||||+|.+ ++|.+|+..|||..++|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3689999999999 679999999999999999987 6999999999 999999999999999999 8876
No 159
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-15 Score=117.29 Aligned_cols=72 Identities=26% Similarity=0.520 Sum_probs=68.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
..++|||+|||..+++++|+++|++||.|.++.++ +|||||+|.+ ++|.+|++.|||..++|+.|+|+++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45789999999999999999999999999999987 6899999999 99999999999999999999999998
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
+
T Consensus 87 ~ 87 (104)
T 1p1t_A 87 S 87 (104)
T ss_dssp C
T ss_pred C
Confidence 7
No 160
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.58 E-value=6.1e-15 Score=119.75 Aligned_cols=72 Identities=24% Similarity=0.525 Sum_probs=67.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
..+.++|||+|||..+++++|+++|++||.|.++.|+ +|||||+|.+ ++|.+|++.|||..++|++|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3568999999999999999999999999999999986 6899999999 999999999999999999999987
Q ss_pred e
Q psy16419 112 A 112 (346)
Q Consensus 112 a 112 (346)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 161
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-15 Score=110.86 Aligned_cols=67 Identities=33% Similarity=0.575 Sum_probs=63.7
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 45 ~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
++|||+|||+++++++|+++|++||.|.++.++ +|||||+|.+ ++|.+|+..++ ..++|++|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999987 5899999999 99999999999 9999999999986
No 162
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=116.31 Aligned_cols=71 Identities=18% Similarity=0.435 Sum_probs=65.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~---------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
...++|||+|||.++++++|+++|++|| |.+|.|+ +|||||+|.+ ++|.+|+ .|||..++|+.|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 5679999999999999999999999999 9999986 5899999999 9999999 8999999999999999
Q ss_pred eec
Q psy16419 112 AGF 114 (346)
Q Consensus 112 a~~ 114 (346)
+++
T Consensus 95 a~~ 97 (100)
T 2j76_E 95 ADQ 97 (100)
T ss_dssp CCC
T ss_pred ccC
Confidence 987
No 163
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.58 E-value=7.9e-16 Score=111.29 Aligned_cols=66 Identities=30% Similarity=0.521 Sum_probs=62.4
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 46 ~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
+|||+|||+++++++|+++|++||.|.++.++ +|||||+|.+ ++|++|++ ||+..++|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999887 5899999999 99999998 9999999999999875
No 164
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=1.6e-16 Score=125.13 Aligned_cols=75 Identities=23% Similarity=0.396 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEE--------EEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECC
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE--------CDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDG 104 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~--------~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g 104 (346)
.+.++|||+|||..+++++|+++|++||.|.. |.|+ +|||||+|.+ ++|.+|+..|||..++|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999998 7665 6899999999 99999999999999999
Q ss_pred EEEEEEEeeccC
Q psy16419 105 KPMKVVVAGFIS 116 (346)
Q Consensus 105 ~~l~v~~a~~~~ 116 (346)
++|+|+++.++.
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999998843
No 165
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=110.26 Aligned_cols=72 Identities=14% Similarity=0.305 Sum_probs=65.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEC--C-EEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR--N-YGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~~--g-~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
...++|||+|||+++++++|+++|++||.|.+|.+.+ + ||||+|.+ ++|.+|+. |||..++|+.|.|+++.+
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 3467999999999999999999999999999983331 2 99999999 99999999 999999999999998876
No 166
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.57 E-value=4e-15 Score=123.13 Aligned_cols=73 Identities=14% Similarity=0.252 Sum_probs=68.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE----CCEEEEEecC-HHHHHHHHHhCCcEECC--EEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV----RNYGFVHIDS-PDINKCIKELNGMMVDG--KPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~----~g~afV~f~~-~~a~~Ai~~l~g~~~~g--~~l~v~~a~~ 114 (346)
....+|||+||++.+++++|+++|++||.|.+|.|. +|||||+|.+ ++|++|++.|||..|.| ++|+|+++++
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 345789999999999999999999999999999987 5799999999 99999999999999965 9999999988
No 167
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.2e-15 Score=116.12 Aligned_cols=73 Identities=12% Similarity=0.142 Sum_probs=68.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCe-EEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTV-VECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v-~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
..+.++|||+|||+++++++|+++|+.||.| ..|.|+ +|||||+|.+ ++|.+|+.. |+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3567899999999999999999999999999 788886 7999999999 999999987 99999999999999
Q ss_pred eec
Q psy16419 112 AGF 114 (346)
Q Consensus 112 a~~ 114 (346)
+.+
T Consensus 91 a~~ 93 (114)
T 2cpy_A 91 VTL 93 (114)
T ss_dssp ECH
T ss_pred CCH
Confidence 987
No 168
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.57 E-value=5.1e-15 Score=116.93 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=67.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCC---eEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGT---VVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVV 110 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~---v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~ 110 (346)
...++|||+|||+++++++|+++|+.||. |..|.|+ +|||||+|.+ ++|++|+. ||+..|+|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45789999999999999999999999999 8888887 6899999999 99999999 99999999999999
Q ss_pred Eeec
Q psy16419 111 VAGF 114 (346)
Q Consensus 111 ~a~~ 114 (346)
++..
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9876
No 169
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=7.4e-15 Score=116.51 Aligned_cols=71 Identities=18% Similarity=0.116 Sum_probs=65.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCE-EEEEecC-HHHHHHHHHhCCcEECC--EEEEEEEeec
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNY-GFVHIDS-PDINKCIKELNGMMVDG--KPMKVVVAGF 114 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~-afV~f~~-~~a~~Ai~~l~g~~~~g--~~l~v~~a~~ 114 (346)
...|||+||++.+++++|+++|++||.|.+|.|. .|| |||+|.+ ++|.+|++.|||..|.| ++|+|.++++
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 3457899999999999999999999999999888 586 9999999 99999999999999987 6999999988
No 170
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.6e-15 Score=115.88 Aligned_cols=73 Identities=18% Similarity=0.285 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCC-eEEEEEE---------CCEEEEEecC-HHHHHHHHHhC--CcEECCEEEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGT-VVECDIV---------RNYGFVHIDS-PDINKCIKELN--GMMVDGKPMK 108 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~-v~~~~i~---------~g~afV~f~~-~~a~~Ai~~l~--g~~~~g~~l~ 108 (346)
.+.++|||+|||..+++++|+++|++||. |.++.++ +|||||+|.+ ++|.+|+..|+ +..++|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999886 6899999999 99999999996 5899999999
Q ss_pred EEEeec
Q psy16419 109 VVVAGF 114 (346)
Q Consensus 109 v~~a~~ 114 (346)
|+++.+
T Consensus 86 V~~a~~ 91 (109)
T 2dis_A 86 VDWAEP 91 (109)
T ss_dssp EEESCS
T ss_pred EEEcCC
Confidence 999988
No 171
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=5.9e-15 Score=109.73 Aligned_cols=69 Identities=19% Similarity=0.506 Sum_probs=65.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCC----C-------CeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEECCEEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPY----G-------TVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPM 107 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~----G-------~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l 107 (346)
.+.++|||+|||+++++++|+++|++| | .|.++.+. +|||||+|.+ ++|.+|+ .|||..++|+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 457899999999999999999999999 8 99999998 8999999999 9999999 999999999999
Q ss_pred EEEE
Q psy16419 108 KVVV 111 (346)
Q Consensus 108 ~v~~ 111 (346)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9974
No 172
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.56 E-value=7.6e-16 Score=115.48 Aligned_cols=69 Identities=26% Similarity=0.599 Sum_probs=64.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 45 ~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
++|||+|||.++++++|+++|++||.|.++.+. +|||||+|.+ + |.+|+..|||..++|++|+|+++.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 689999999999999999999999999999987 6899999999 9 9999999999999999999999987
No 173
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8.1e-15 Score=113.07 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=67.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEE-EEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE-CDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~-~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
...++|||+|||+++++++|+++|++||.|.+ |.|+ +|||||+|.+ ++|++|+.. |+..++|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 55789999999999999999999999999987 7775 7999999999 999999997 999999999999998
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
..
T Consensus 92 ~~ 93 (104)
T 1wg5_A 92 SR 93 (104)
T ss_dssp CT
T ss_pred CH
Confidence 76
No 174
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.55 E-value=8.8e-16 Score=124.62 Aligned_cols=111 Identities=9% Similarity=0.082 Sum_probs=66.0
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecC-CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAAT-SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--- 77 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~-~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--- 77 (346)
+|.+|+.++.+-.++..+... ..|....-.... .........++|||+|||+++++++|+++|++|| |++|.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~ 81 (139)
T 2hgn_A 4 SHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP 81 (139)
T ss_dssp ------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS
T ss_pred ccccccCccccchhcccchhc-cCCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC
Confidence 355666666665555544332 222222111111 1112235578999999999999999999999999 6688887
Q ss_pred ----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeecc
Q psy16419 78 ----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFI 115 (346)
Q Consensus 78 ----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 115 (346)
+|||||+|.+ ++|++|| .+|+..|+|+.|+|..+.++
T Consensus 82 ~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 82 DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCS
T ss_pred CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCC
Confidence 7899999999 9999999 78999999999999998873
No 175
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.4e-15 Score=119.85 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=66.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEE-EEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC-DIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~-~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
...++|||+|||+++++++|+++|+.||.|.++ .+. +|||||+|.+ ++|.+||. ||+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 557899999999999999999999999999774 333 7899999999 99999999 9999999999999998
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 77
No 176
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-15 Score=117.28 Aligned_cols=73 Identities=26% Similarity=0.443 Sum_probs=65.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
...++|||+|||+++++++|+++|++||.|..+.+. +|||||+|.+ ++|.+|++ |||..+.|+.|+|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 467899999999999999999999999987662111 7999999999 99999998 99999999999999998
Q ss_pred cc
Q psy16419 114 FI 115 (346)
Q Consensus 114 ~~ 115 (346)
++
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 83
No 177
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.55 E-value=1.6e-14 Score=108.14 Aligned_cols=69 Identities=29% Similarity=0.473 Sum_probs=59.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---CCEEEEEecC-HHHHHHHHHhCCcE--ECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMM--VDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~---~g~afV~f~~-~~a~~Ai~~l~g~~--~~g~~l~v~~a~~ 114 (346)
.+.++|||+|||+++++++|+++|++||.|.+|.|+ ||||||+|.+ ++|++ +++.. +.|+.|.|.++.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 567899999999999999999999999999999998 7999999999 88873 45654 5699999999987
No 178
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=7.2e-15 Score=111.47 Aligned_cols=73 Identities=21% Similarity=0.312 Sum_probs=67.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEE-EE----CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD-IV----RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~-i~----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
...++|||+|||+.+++++|+++|++||.|.+++ ++ .+.|||+|.+ ++|.+|+..|||..++|++|+|+++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 4578999999999999999999999999999994 66 3569999999 999999999999999999999999988
No 179
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.55 E-value=4.6e-15 Score=119.94 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=67.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCC---eEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGT---VVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVV 110 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~---v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~ 110 (346)
...++|||+|||+++|+++|+++|++||. |.+|.|+ +|||||+|.+ ++|++|++ ||+..|+|+.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 55789999999999999999999999999 7888887 6899999999 99999999 99999999999999
Q ss_pred Eeec
Q psy16419 111 VAGF 114 (346)
Q Consensus 111 ~a~~ 114 (346)
++.+
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 9876
No 180
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.5e-14 Score=112.44 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=65.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
...+|||+|||+++++++|+++|+.| .|.+|.|+ +|||||+|.+ ++|++|+ .+|+..|+|+.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 35799999999999999999999999 89999987 7999999999 9999999 6999999999999988876
No 181
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.54 E-value=5.6e-15 Score=130.31 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=67.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCC--CeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYG--TVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G--~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
..++|||+||++.+++++|+++|++|| .|.+|.|+ ||||||+|.+ ++|++||+.||+..|+|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467899999999999999999999999 99999987 6899999999 999999999999999999999999
Q ss_pred eec
Q psy16419 112 AGF 114 (346)
Q Consensus 112 a~~ 114 (346)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 876
No 182
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=9.4e-15 Score=108.57 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=63.2
Q ss_pred CcEEEEcCCCCCCCHHH----HHHhhcCC-CCeEEEEEECCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 44 TTKVFVGNLSDNTRAPE----VRELFVPY-GTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~----L~~~F~~~-G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.+.|||+|||+.+++++ |+++|++| |+|.+| ..|+|||.|.+ ++|.+|++.|+|..+.|++|+|.+++.
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 34499999999999987 55899999 599888 35999999999 999999999999999999999999988
No 183
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.54 E-value=3.8e-15 Score=119.89 Aligned_cols=74 Identities=16% Similarity=0.411 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEE--EEEE--------CCEEEEEecCHHHHHHHHHhCCc----EECCEEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE--CDIV--------RNYGFVHIDSPDINKCIKELNGM----MVDGKPM 107 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~--~~i~--------~g~afV~f~~~~a~~Ai~~l~g~----~~~g~~l 107 (346)
...++|||+|||+++++++|+++|++||.|.. |+|+ ||||||+|.+.+|.+|+..|||. .++|+.|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIEAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHHHHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCHHHHHHHHHhcCCCCCccCCCEEE
Confidence 56789999999999999999999999999976 8777 69999999998899999999999 9999999
Q ss_pred EEEEeecc
Q psy16419 108 KVVVAGFI 115 (346)
Q Consensus 108 ~v~~a~~~ 115 (346)
+|++++++
T Consensus 101 ~V~~a~~~ 108 (131)
T 2m2b_A 101 NVEFAKGS 108 (131)
T ss_dssp CCEECCCS
T ss_pred EEEECCCC
Confidence 99999883
No 184
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.53 E-value=1.6e-14 Score=114.54 Aligned_cols=72 Identities=24% Similarity=0.439 Sum_probs=68.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
..+.++|||+|| ++++++|+++|++||.|.+|.+. +|||||+|.+ ++|.+|+..|||..++|+.|+|.++.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 356899999996 69999999999999999999998 8999999999 999999999999999999999999988
No 185
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=8.8e-15 Score=109.22 Aligned_cols=72 Identities=24% Similarity=0.421 Sum_probs=62.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeecc
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGFI 115 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~---~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 115 (346)
...++|||+|||+++++++|+++|++||.|.+|.|+ +|||||+|.+ ++|++|+. ....+.|++|.|.++.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPK 78 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCC
Confidence 357899999999999999999999999999999998 7999999999 98875432 134568999999999883
No 186
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=5.3e-14 Score=120.77 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHh--CCCeeCCeeeEEeecCCCCCCC--------CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE
Q psy16419 8 NDEEGRTAIKEL--NGQIVNEKPLKIEAATSRKGPN--------TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV 77 (346)
Q Consensus 8 ~~e~A~~Al~~l--ng~~l~g~~i~v~~~~~~~~~~--------~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~ 77 (346)
+.+....|++.. ....+.+....|........+. ...++|||+|||+++++++|+++|++||.|.+|.|.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 667788888876 5566777666666653222221 135899999999999999999999999999999987
Q ss_pred -------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 78 -------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 78 -------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
+|||||+|.+ ++|.+|+..+ +..++|++|.|.++..
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 6999999999 9999999865 4599999999998765
No 187
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.53 E-value=1.3e-14 Score=118.51 Aligned_cols=74 Identities=24% Similarity=0.464 Sum_probs=67.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEE--------EEEE-----CCEEEEEecC-HHHHHHHHHhCCcEECCEE
Q psy16419 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVE--------CDIV-----RNYGFVHIDS-PDINKCIKELNGMMVDGKP 106 (346)
Q Consensus 41 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~--------~~i~-----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~ 106 (346)
..+.++|||+|||+.+++++|+++|++||.|.. +.+. +|||||+|.+ ++|.+|+..|||..+.|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 356799999999999999999999999999865 3333 7999999999 9999999999999999999
Q ss_pred EEEEEeec
Q psy16419 107 MKVVVAGF 114 (346)
Q Consensus 107 l~v~~a~~ 114 (346)
|.|.++++
T Consensus 122 l~V~~a~~ 129 (143)
T 3egn_A 122 MVVQFARS 129 (143)
T ss_dssp CEEEECCC
T ss_pred EEEEECCC
Confidence 99999987
No 188
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.51 E-value=5.9e-15 Score=114.45 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=67.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCC---eEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGT---VVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVV 110 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~---v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~ 110 (346)
...++|||+|||+++++++|+++|+.||. |.+|.|+ +|||||+|.+ ++|.+|+. +|+..++|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 56789999999999999999999999998 8888887 6899999999 99999999 99999999999999
Q ss_pred Eeec
Q psy16419 111 VAGF 114 (346)
Q Consensus 111 ~a~~ 114 (346)
++.+
T Consensus 88 ~a~~ 91 (107)
T 2lmi_A 88 EINN 91 (107)
T ss_dssp ECCH
T ss_pred ECCH
Confidence 9876
No 189
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.51 E-value=4e-15 Score=107.48 Aligned_cols=66 Identities=27% Similarity=0.465 Sum_probs=61.9
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 46 ~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
+|||+|||+++++++|+++|++||.|.++.++ +|||||+|.+ ++|.+|+.. ++..++|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 59999999999999999999999999999886 6899999999 999999985 899999999999875
No 190
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.51 E-value=2e-14 Score=110.27 Aligned_cols=71 Identities=31% Similarity=0.537 Sum_probs=67.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
...++|||+|||+.+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|++|+. ++..++|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 346899999999999999999999999999999997 5999999999 99999998 9999999999999998
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
+
T Consensus 85 ~ 85 (102)
T 2xs2_A 85 R 85 (102)
T ss_dssp E
T ss_pred c
Confidence 7
No 191
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.51 E-value=7.7e-15 Score=120.85 Aligned_cols=41 Identities=22% Similarity=0.405 Sum_probs=38.5
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe---cceeeC
Q psy16419 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---KNYGFV 346 (346)
Q Consensus 306 ~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~---k~fgFV 346 (346)
+.++|||+|||+++|+++|+++|++||.|.+|+|+ ||||||
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV 115 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFV 115 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEE
Confidence 36799999999999999999999999999999997 679997
No 192
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.51 E-value=2.4e-14 Score=121.21 Aligned_cols=73 Identities=26% Similarity=0.481 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
...++|||+|||+.+++++|+++|++||.|.+|.|. +|||||+|.+ ++|.+|++.|||..|+|++|+|+++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 457899999999999999999999999999999997 6999999999 99999999999999999999999987
Q ss_pred c
Q psy16419 114 F 114 (346)
Q Consensus 114 ~ 114 (346)
.
T Consensus 166 ~ 166 (177)
T 2f3j_A 166 S 166 (177)
T ss_dssp S
T ss_pred C
Confidence 6
No 193
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.48 E-value=3.6e-14 Score=125.04 Aligned_cols=73 Identities=18% Similarity=0.321 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCCCC---------CHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEE-------
Q psy16419 42 TPTTKVFVGNLSDNT---------RAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMV------- 102 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~---------~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~------- 102 (346)
...++|||+||+..+ ++++|+++|++||.|.+|.|+ ||||||+|.+ ++|+.|++.|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e 211 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKE 211 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccccc
Confidence 567899999999998 799999999999999999998 9999999999 999999999999999
Q ss_pred -----CCEEEEEEEeec
Q psy16419 103 -----DGKPMKVVVAGF 114 (346)
Q Consensus 103 -----~g~~l~v~~a~~ 114 (346)
.|+.|.|+||..
T Consensus 212 ~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 212 WDDRREGTGLLVKWANE 228 (240)
T ss_dssp GGGGGGSCCCEEEECC-
T ss_pred ccccCCCCEEEEEEccC
Confidence 899999999987
No 194
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2.8e-14 Score=113.26 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=65.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCe----EEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTV----VECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v----~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v 109 (346)
...++|||+|||+++++++|+++|++||.| .+|.|+ +|||||+|.+ ++|++|+.. |+..|+|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 446899999999999999999999999975 577776 6999999999 999999996 999999999999
Q ss_pred EEeec
Q psy16419 110 VVAGF 114 (346)
Q Consensus 110 ~~a~~ 114 (346)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98876
No 195
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.47 E-value=7.1e-14 Score=111.28 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=64.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeE--EEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVV--ECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~--~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
...++|||+|||+++++++|+++|++| .|+ +|.|+ +|||||+|.+ ++|++|+.. ++..|+|+.|+|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 457899999999999999999999999 676 88887 7999999999 999999984 78999999999998
Q ss_pred eec
Q psy16419 112 AGF 114 (346)
Q Consensus 112 a~~ 114 (346)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 865
No 196
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.45 E-value=1.5e-13 Score=113.99 Aligned_cols=41 Identities=32% Similarity=0.591 Sum_probs=37.8
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 306 ~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
+.++|||+|||+++|+++|+++|++||+|.+|.|+ ||||||
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV 117 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 117 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEE
Confidence 36799999999999999999999999999999997 459997
No 197
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.42 E-value=7.8e-13 Score=101.98 Aligned_cols=73 Identities=25% Similarity=0.377 Sum_probs=65.4
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHhhcCCCCeEEEEEE---------CCEEEEEecC-HHHHHHHHHhCCcEECCEE
Q psy16419 42 TPTTKVFVGNLSD-----NTRAPEVRELFVPYGTVVECDIV---------RNYGFVHIDS-PDINKCIKELNGMMVDGKP 106 (346)
Q Consensus 42 ~~~~~lfV~nLp~-----~~~e~~L~~~F~~~G~v~~~~i~---------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~ 106 (346)
.++++|+|.||.. +-++++|+++|++||.|.+|.|+ +|||||+|.+ ++|.+|+..|||..++|++
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999963 23689999999999999999987 5899999999 9999999999999999999
Q ss_pred EEEEEeec
Q psy16419 107 MKVVVAGF 114 (346)
Q Consensus 107 l~v~~a~~ 114 (346)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999876
No 198
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.42 E-value=4e-13 Score=105.51 Aligned_cols=70 Identities=13% Similarity=0.279 Sum_probs=64.6
Q ss_pred cEEEEcCC----CCCCCHHHHHHhhcCCCCeEEEEEE--------CCEEEEEec------C-HH--HHHHHH--HhCCcE
Q psy16419 45 TKVFVGNL----SDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHID------S-PD--INKCIK--ELNGMM 101 (346)
Q Consensus 45 ~~lfV~nL----p~~~~e~~L~~~F~~~G~v~~~~i~--------~g~afV~f~------~-~~--a~~Ai~--~l~g~~ 101 (346)
++|||+|| |+.+++++|+++|+.||+|.+|.++ +|||||+|. + .. |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999998 799999998 3 22 889988 789999
Q ss_pred ECCEEEEEEEeec
Q psy16419 102 VDGKPMKVVVAGF 114 (346)
Q Consensus 102 ~~g~~l~v~~a~~ 114 (346)
|+|++|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999999776
No 199
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.4e-12 Score=101.76 Aligned_cols=73 Identities=14% Similarity=0.227 Sum_probs=66.0
Q ss_pred CCCcEEEEcCCCCCCC-----------HHHHHHhhcCCCCeEEEEEE----CCEEEEEecC-HHHHHHHHHhCCcEECCE
Q psy16419 42 TPTTKVFVGNLSDNTR-----------APEVRELFVPYGTVVECDIV----RNYGFVHIDS-PDINKCIKELNGMMVDGK 105 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~-----------e~~L~~~F~~~G~v~~~~i~----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~ 105 (346)
.++++|+|.||....+ +++|+++|++||.|.+|.|. +|||||+|.+ ++|.+|+..|||..++|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 5688999999944332 57999999999999999776 7999999999 999999999999999999
Q ss_pred EEEEEEeec
Q psy16419 106 PMKVVVAGF 114 (346)
Q Consensus 106 ~l~v~~a~~ 114 (346)
+|+|.++.+
T Consensus 93 ~l~v~~a~~ 101 (112)
T 2dit_A 93 QITAQAWDG 101 (112)
T ss_dssp ECEEEECCS
T ss_pred EEEEEEeCC
Confidence 999999987
No 200
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=7.6e-13 Score=103.65 Aligned_cols=70 Identities=26% Similarity=0.406 Sum_probs=60.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-----------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEE
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-----------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v 109 (346)
...++|||+|||+++++++|+++|++||.|. +.++ +|||||+|.+ ++|++|++.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999998 6554 5899999999 99999999983 478888877
Q ss_pred EEeec
Q psy16419 110 VVAGF 114 (346)
Q Consensus 110 ~~a~~ 114 (346)
..+..
T Consensus 83 ~~~~~ 87 (114)
T 2dnl_A 83 VSSPT 87 (114)
T ss_dssp ECCSS
T ss_pred ccCCC
Confidence 65443
No 201
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.3e-12 Score=100.33 Aligned_cols=42 Identities=24% Similarity=0.240 Sum_probs=39.3
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--k~fgFV 346 (346)
.+.++|||+|||+++||++|+++|++||+|++|.|+ ||||||
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFV 57 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFI 57 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEE
Confidence 447899999999999999999999999999999999 689998
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.28 E-value=6.2e-12 Score=116.52 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=64.6
Q ss_pred CCCCcEEEEcC--CCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEEC---CE--EEEEE
Q psy16419 41 NTPTTKVFVGN--LSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVD---GK--PMKVV 110 (346)
Q Consensus 41 ~~~~~~lfV~n--Lp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~---g~--~l~v~ 110 (346)
..++.+|||+| |+..++|++|+++|++||.|.+|.+. ||||||+|.+ ++|++|++.|||..+. |+ +|.+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 35688999999 57899999999999999999998886 9999999999 9999999999999883 44 67777
Q ss_pred Eee
Q psy16419 111 VAG 113 (346)
Q Consensus 111 ~a~ 113 (346)
++.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 764
No 203
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.28 E-value=9.8e-12 Score=95.80 Aligned_cols=73 Identities=22% Similarity=0.262 Sum_probs=64.2
Q ss_pred CCCcEEEEcCC--CCCCC--------HHHHHHhhcCCCCeEEEEEE----------CCEEEEEecC-HHHHHHHHHhCCc
Q psy16419 42 TPTTKVFVGNL--SDNTR--------APEVRELFVPYGTVVECDIV----------RNYGFVHIDS-PDINKCIKELNGM 100 (346)
Q Consensus 42 ~~~~~lfV~nL--p~~~~--------e~~L~~~F~~~G~v~~~~i~----------~g~afV~f~~-~~a~~Ai~~l~g~ 100 (346)
.+++.|.+.|+ |..+. +++|+++|++||.|.+|.|+ +|++||+|.+ ++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35778999998 33443 36899999999999999987 4899999999 9999999999999
Q ss_pred EECCEEEEEEEeec
Q psy16419 101 MVDGKPMKVVVAGF 114 (346)
Q Consensus 101 ~~~g~~l~v~~a~~ 114 (346)
.++||+|+|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999866
No 204
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.28 E-value=2.4e-12 Score=96.15 Aligned_cols=42 Identities=26% Similarity=0.555 Sum_probs=38.4
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe---cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~---k~fgFV 346 (346)
.+.++|||+|||+++||++|+++|++||+|++|+|+ ||||||
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV 53 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFV 53 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEE
Confidence 346899999999999999999999999999999997 689997
No 205
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.27 E-value=4.9e-12 Score=96.09 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=39.9
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--k~fgFV 346 (346)
..|+++|||+|||+++||++|+++|++||+|.+|.|+ ||||||
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFV 62 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALV 62 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEE
Confidence 3457899999999999999999999999999999998 789997
No 206
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=5.5e-12 Score=99.15 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=40.5
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--k~fgFV 346 (346)
...+.++|||+|||+++||++|+++|++||+|++|.|+ ||||||
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFV 72 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFI 72 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEE
Confidence 44567899999999999999999999999999999999 689997
No 207
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=8.1e-12 Score=95.52 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=40.3
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--k~fgFV 346 (346)
...+.++|||+|||+++||++|+++|++||.|++|.|+ |+||||
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFV 56 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFL 56 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEE
Confidence 44567899999999999999999999999999999998 589997
No 208
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.23 E-value=5.8e-12 Score=96.40 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=39.7
Q ss_pred CCCcceEEEecCCC-CCCHHHHHHHhhcccceEEEEEec--ceeeC
Q psy16419 304 SVGTFKIFIGNVNP-GTSVELIRPLFEKYGKVVECDVVK--NYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~-~~tee~L~~~F~~~G~I~~v~i~k--~fgFV 346 (346)
..+.++|||+|||+ ++||++|+++|++||+|.+|.|++ +||||
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFV 57 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFI 57 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEE
Confidence 34678999999999 999999999999999999999985 79997
No 209
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.5e-11 Score=92.53 Aligned_cols=59 Identities=14% Similarity=0.181 Sum_probs=54.4
Q ss_pred CCCCHHHHHHhhcCCCCeEEEEEE---CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 54 DNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 54 ~~~~e~~L~~~F~~~G~v~~~~i~---~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
..+++++|+++|++||.|.+|.|+ +|||||+|.+ ++|++|+..+++ +.|++|+|+|+++
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 578999999999999999999997 8999999999 999999998554 6799999999887
No 210
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.22 E-value=2.9e-12 Score=98.67 Aligned_cols=64 Identities=22% Similarity=0.417 Sum_probs=57.4
Q ss_pred EcCCCCCCCHHHHHHhh------------cCCCCeEEEEEE-------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEE
Q psy16419 49 VGNLSDNTRAPEVRELF------------VPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMK 108 (346)
Q Consensus 49 V~nLp~~~~e~~L~~~F------------~~~G~v~~~~i~-------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~ 108 (346)
+.+|+..+++++|++.| ++||.|.+|.|+ +|||||+|.+ ++|.+|+..|||..++|++|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777788888777666 999999999998 6999999999 999999999999999999999
Q ss_pred EEEe
Q psy16419 109 VVVA 112 (346)
Q Consensus 109 v~~a 112 (346)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9885
No 211
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.21 E-value=1.1e-11 Score=94.38 Aligned_cols=40 Identities=23% Similarity=0.507 Sum_probs=37.6
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
+++|||+|||+++||++|+++|++||+|.+|+|+ ||||||
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV 66 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEE
Confidence 6789999999999999999999999999999997 469997
No 212
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.21 E-value=2e-11 Score=93.85 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=39.8
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--k~fgFV 346 (346)
..+.++|||+|||+++||++|+++|++||+|.+|.|+ |+||||
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFV 56 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALV 56 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEE
Confidence 3457899999999999999999999999999999998 689997
No 213
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=1.7e-11 Score=91.53 Aligned_cols=42 Identities=57% Similarity=1.083 Sum_probs=40.0
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEecceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||+|++|.|+|+||||
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~g~afV 47 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 47 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEETTEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCEEEE
Confidence 447899999999999999999999999999999999999997
No 214
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.19 E-value=8.8e-11 Score=92.29 Aligned_cols=72 Identities=24% Similarity=0.248 Sum_probs=63.4
Q ss_pred CCcEEEEcCCC--CCC---CHHHHHHhhcCCCCeEEEEEE------------CCEEEEEecC-HHHHHHHHHhCCcEECC
Q psy16419 43 PTTKVFVGNLS--DNT---RAPEVRELFVPYGTVVECDIV------------RNYGFVHIDS-PDINKCIKELNGMMVDG 104 (346)
Q Consensus 43 ~~~~lfV~nLp--~~~---~e~~L~~~F~~~G~v~~~~i~------------~g~afV~f~~-~~a~~Ai~~l~g~~~~g 104 (346)
+++.|++.|+- .++ -++||++.|++||.|.+|.|+ +|++||+|.+ ++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 47889999983 222 358999999999999999987 2799999999 99999999999999999
Q ss_pred EEEEEEEeec
Q psy16419 105 KPMKVVVAGF 114 (346)
Q Consensus 105 ~~l~v~~a~~ 114 (346)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999865
No 215
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=1.9e-11 Score=91.69 Aligned_cols=43 Identities=42% Similarity=0.886 Sum_probs=40.4
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEecceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k~fgFV 346 (346)
..+.++|||+|||+++|+++|+++|++||+|++|.|+++||||
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~~afV 49 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFV 49 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCEEEE
Confidence 3457899999999999999999999999999999999999997
No 216
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.18 E-value=1.9e-11 Score=95.78 Aligned_cols=40 Identities=35% Similarity=0.724 Sum_probs=37.7
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe------cceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~------k~fgFV 346 (346)
.++|||+|||+++||++|+++|++||+|++|+|+ ||||||
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV 50 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFV 50 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEE
Confidence 5689999999999999999999999999999997 579997
No 217
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=1.9e-11 Score=91.32 Aligned_cols=42 Identities=52% Similarity=0.990 Sum_probs=39.9
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEecceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||+|.+|+|+++||||
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~afV 48 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 48 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECCEEEE
Confidence 447899999999999999999999999999999999999997
No 218
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.17 E-value=1e-10 Score=91.22 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=62.9
Q ss_pred CCCcEEEEcCCCCCCC----------HHHHHHhhcCCCCeEEEEEE----CCEEEEEecC-HHHHHHHHHhCCcEECCEE
Q psy16419 42 TPTTKVFVGNLSDNTR----------APEVRELFVPYGTVVECDIV----RNYGFVHIDS-PDINKCIKELNGMMVDGKP 106 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~----------e~~L~~~F~~~G~v~~~~i~----~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~ 106 (346)
.+++.|.+.|+=.... ++||++.|++||.|.+|.|. +|++||+|.+ ++|.+|+..|||..++|+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4567788888832211 34789999999999999987 6999999999 9999999999999999999
Q ss_pred EEEEEeec
Q psy16419 107 MKVVVAGF 114 (346)
Q Consensus 107 l~v~~a~~ 114 (346)
|.|.++..
T Consensus 85 i~v~~~~~ 92 (114)
T 3s6e_A 85 ITAAYVPL 92 (114)
T ss_dssp CEEEEECH
T ss_pred EEEEEEcH
Confidence 99999865
No 219
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.16 E-value=1.9e-11 Score=94.94 Aligned_cols=43 Identities=23% Similarity=0.253 Sum_probs=39.9
Q ss_pred CCCcceEEEecCCCC-CCHHHHHHHhhcccceEEEEEe--cceeeC
Q psy16419 304 SVGTFKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVV--KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~-~tee~L~~~F~~~G~I~~v~i~--k~fgFV 346 (346)
..+.++|||+|||++ +||++|+++|++||+|.+|.|+ |+||||
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFV 67 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFI 67 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEE
Confidence 456789999999998 9999999999999999999998 589997
No 220
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.15 E-value=3.5e-11 Score=93.52 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=38.8
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
.+.++|||+|||+++||++|+++|++||+|++|+|+ ||||||
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV 53 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARV 53 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEE
Confidence 346799999999999999999999999999999996 579997
No 221
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.15 E-value=2.6e-11 Score=91.72 Aligned_cols=42 Identities=26% Similarity=0.589 Sum_probs=39.5
Q ss_pred CCcceEEEecCCC-CCCHHHHHHHhhcccceEEEEEecceeeC
Q psy16419 305 VGTFKIFIGNVNP-GTSVELIRPLFEKYGKVVECDVVKNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~-~~tee~L~~~F~~~G~I~~v~i~k~fgFV 346 (346)
.+.++|||+|||+ ++|+++|+++|++||+|.+|.|.|+||||
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV 50 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFI 50 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEETTEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEE
Confidence 4478999999999 99999999999999999999999999997
No 222
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.15 E-value=3.2e-11 Score=92.43 Aligned_cols=42 Identities=21% Similarity=0.516 Sum_probs=39.8
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEecceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||+|++|.|+|+||||
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV 50 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFI 50 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEE
Confidence 346899999999999999999999999999999999999997
No 223
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.15 E-value=3.6e-11 Score=91.19 Aligned_cols=44 Identities=27% Similarity=0.566 Sum_probs=40.5
Q ss_pred CCCCcceEEEecCCC-CCCHHHHHHHhhcccceEEEEEecceeeC
Q psy16419 303 SSVGTFKIFIGNVNP-GTSVELIRPLFEKYGKVVECDVVKNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~-~~tee~L~~~F~~~G~I~~v~i~k~fgFV 346 (346)
...+.++|||+|||+ ++|+++|+++|++||.|.+|+|.||||||
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV 62 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFI 62 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEECSSEEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEE
Confidence 344578999999998 99999999999999999999999999997
No 224
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.9e-11 Score=90.87 Aligned_cols=41 Identities=24% Similarity=0.632 Sum_probs=38.6
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe---cceeeC
Q psy16419 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---KNYGFV 346 (346)
Q Consensus 306 ~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~---k~fgFV 346 (346)
+.++|||+|||+++|+++|+++|++||+|.+|+|+ |+||||
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV 47 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFV 47 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEE
Confidence 46899999999999999999999999999999997 689997
No 225
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.15 E-value=3.4e-11 Score=88.50 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=38.0
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--cceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--k~fgFV 346 (346)
+..|||+||++.+||++|+++|++||+|.+|.|+ ||||||
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFV 48 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALC 48 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEE
Confidence 5689999999999999999999999999999996 899997
No 226
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.14 E-value=3.5e-11 Score=93.16 Aligned_cols=44 Identities=14% Similarity=0.423 Sum_probs=40.6
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEecceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|++|.|+||||||
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~kg~afV 70 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFV 70 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEETTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEE
Confidence 34457899999999999999999999999999999999999997
No 227
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=5e-11 Score=91.47 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=38.4
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe-------cceeeC
Q psy16419 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFV 346 (346)
Q Consensus 306 ~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~-------k~fgFV 346 (346)
+.++|||+|||+++|+++|+++|++||+|.+|.|+ ||||||
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV 57 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFV 57 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEE
Confidence 46789999999999999999999999999999997 579997
No 228
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.1e-10 Score=88.80 Aligned_cols=43 Identities=26% Similarity=0.434 Sum_probs=40.3
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcc--cceEEEEEecceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKY--GKVVECDVVKNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~--G~I~~v~i~k~fgFV 346 (346)
..+.++|||+|||+++|+++|+++|++| |.|.+|++.|+||||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV 56 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFV 56 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEE
Confidence 3457899999999999999999999999 999999999999997
No 229
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.10 E-value=1.1e-10 Score=90.51 Aligned_cols=44 Identities=36% Similarity=0.705 Sum_probs=40.7
Q ss_pred CCCCcceEEEecCCCC-CCHHHHHHHhhcccceEEEEEecceeeC
Q psy16419 303 SSVGTFKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~-~tee~L~~~F~~~G~I~~v~i~k~fgFV 346 (346)
+..+.++|||+|||++ +|+++|+++|++||+|++|.|.|+||||
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV 67 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 67 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEETTEEEE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEeCCEEEE
Confidence 3345689999999999 9999999999999999999999999997
No 230
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.10 E-value=9.8e-11 Score=86.67 Aligned_cols=42 Identities=31% Similarity=0.710 Sum_probs=38.7
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||+|.+|.|+ ++||||
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 58 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFI 58 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEE
Confidence 447899999999999999999999999999999997 569997
No 231
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=2.3e-10 Score=84.18 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=62.7
Q ss_pred CCCcEEEEcCCC----CCCCH----HHHHHhhcCCCCeEEEEEECCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEe
Q psy16419 42 TPTTKVFVGNLS----DNTRA----PEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA 112 (346)
Q Consensus 42 ~~~~~lfV~nLp----~~~~e----~~L~~~F~~~G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a 112 (346)
++..||+|.-.+ .++-+ .+|.+.|++||.|..+++..+.+||+|.+ ++|.+|+. |||..++|+.|+|+.+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 456788887766 23334 57899999999999999998889999999 99999998 9999999999999998
Q ss_pred ec
Q psy16419 113 GF 114 (346)
Q Consensus 113 ~~ 114 (346)
.+
T Consensus 84 t~ 85 (91)
T 2dnr_A 84 SP 85 (91)
T ss_dssp CC
T ss_pred CC
Confidence 87
No 232
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.09 E-value=1.1e-10 Score=90.19 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=38.9
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhcccceEEEEEec-ceeeC
Q psy16419 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK-NYGFV 346 (346)
Q Consensus 306 ~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k-~fgFV 346 (346)
..++|||+|||+++|+++|+++|++||+|++|+|++ +||||
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV 55 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVV 55 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEE
Confidence 368999999999999999999999999999999998 89997
No 233
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=1.9e-10 Score=87.96 Aligned_cols=44 Identities=23% Similarity=0.548 Sum_probs=40.1
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~------k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|++|+|+ ++||||
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV 60 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFV 60 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEE
Confidence 34457899999999999999999999999999999998 679997
No 234
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.08 E-value=1.9e-10 Score=88.32 Aligned_cols=42 Identities=36% Similarity=0.584 Sum_probs=39.1
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe-------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~-------k~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||+|++|.|+ |+||||
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV 61 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFV 61 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEE
Confidence 457899999999999999999999999999999998 579997
No 235
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=1.1e-10 Score=86.04 Aligned_cols=42 Identities=36% Similarity=0.718 Sum_probs=38.7
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
.++++|||+|||+++|+++|+++|++||+|.+|.|+ ++||||
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV 52 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFV 52 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEE
Confidence 457899999999999999999999999999999997 469997
No 236
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.07 E-value=2.2e-11 Score=91.23 Aligned_cols=39 Identities=15% Similarity=0.329 Sum_probs=36.5
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccc-ceEEEEEe--------cceeeC
Q psy16419 308 FKIFIGNVNPGTSVELIRPLFEKYG-KVVECDVV--------KNYGFV 346 (346)
Q Consensus 308 ~~lfV~nLp~~~tee~L~~~F~~~G-~I~~v~i~--------k~fgFV 346 (346)
++|||+|||+++||++|+++|++|| +|.+|+|+ ||||||
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV 49 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFV 49 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEE
Confidence 5899999999999999999999999 89999996 579997
No 237
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=1.2e-10 Score=88.07 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=39.4
Q ss_pred CCcceEEEecCCCCCCHHHHH----HHhhcccceEEEEEe-----cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIR----PLFEKYGKVVECDVV-----KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~----~~F~~~G~I~~v~i~-----k~fgFV 346 (346)
.+.++|||+|||+++|+++|+ ++|++||+|++|+|+ |+||||
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV 57 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVV 57 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEE
Confidence 346899999999999999999 999999999999999 889997
No 238
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=1.8e-10 Score=88.14 Aligned_cols=44 Identities=25% Similarity=0.616 Sum_probs=40.1
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~------k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|++|.|+ ++||||
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV 60 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFV 60 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEE
Confidence 34467899999999999999999999999999999998 579997
No 239
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.06 E-value=1.5e-10 Score=96.65 Aligned_cols=42 Identities=21% Similarity=0.469 Sum_probs=38.3
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||+|.+|.|+ ++||||
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 119 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALV 119 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEE
Confidence 346799999999999999999999999999999997 579997
No 240
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.06 E-value=9.2e-10 Score=86.31 Aligned_cols=43 Identities=23% Similarity=0.404 Sum_probs=39.2
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
..+.++|||+|||+++|+++|+++|++||+|++|+|+ |+||||
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV 87 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFV 87 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEE
Confidence 3457899999999999999999999999999999997 569997
No 241
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=2.5e-10 Score=84.01 Aligned_cols=42 Identities=17% Similarity=0.400 Sum_probs=38.9
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEec--ceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--NYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k--~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||+|.+|.|++ +||||
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV 53 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFI 53 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEE
Confidence 4467999999999999999999999999999999985 89997
No 242
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=7.2e-11 Score=91.83 Aligned_cols=44 Identities=30% Similarity=0.427 Sum_probs=39.3
Q ss_pred CCCCcceEEE--ecCCCCCCHHHHHHHhhcccceEEEEEe--cceeeC
Q psy16419 303 SSVGTFKIFI--GNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV--~nLp~~~tee~L~~~F~~~G~I~~v~i~--k~fgFV 346 (346)
...|+++||| +||++++||++|+++|++||+|++|.|. |+||||
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV 68 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFA 68 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEE
Confidence 3345789999 6699999999999999999999999997 679998
No 243
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.04 E-value=8.6e-11 Score=88.73 Aligned_cols=40 Identities=25% Similarity=0.468 Sum_probs=35.9
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccc--eEEEEEe--------cceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGK--VVECDVV--------KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~--I~~v~i~--------k~fgFV 346 (346)
..+|||+|||+++||++|+++|++||. |.+|+|+ ||||||
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV 58 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFV 58 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEE
Confidence 568999999999999999999999995 6788886 569997
No 244
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.04 E-value=1.9e-10 Score=84.27 Aligned_cols=40 Identities=33% Similarity=0.717 Sum_probs=37.3
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
+.+|||+|||+++|+++|+++|++||+|.+|.|+ ++||||
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV 48 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFV 48 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEE
Confidence 3689999999999999999999999999999997 579997
No 245
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=2.7e-10 Score=86.44 Aligned_cols=42 Identities=29% Similarity=0.630 Sum_probs=38.7
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||+|++|.|+ |+||||
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 57 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 57 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEE
Confidence 446899999999999999999999999999999996 579997
No 246
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=3.1e-10 Score=87.79 Aligned_cols=44 Identities=27% Similarity=0.593 Sum_probs=39.7
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe-----cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~-----k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|++|+|. |+||||
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV 66 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFV 66 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEE
Confidence 34457899999999999999999999999999999996 569997
No 247
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.03 E-value=2.4e-10 Score=88.54 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=39.4
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
..+.++|||+|||+++|+++|+++|++||+|.+|.|+ ++||||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 62 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFA 62 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEE
Confidence 3457899999999999999999999999999999997 579997
No 248
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=1.7e-10 Score=89.33 Aligned_cols=44 Identities=20% Similarity=0.539 Sum_probs=40.3
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~------k~fgFV 346 (346)
...+.++|||+|||.++|+++|+++|++||+|++|+|+ |+||||
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV 74 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFV 74 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEE
Confidence 44557899999999999999999999999999999998 679997
No 249
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.03 E-value=2.5e-10 Score=83.96 Aligned_cols=42 Identities=12% Similarity=0.456 Sum_probs=38.5
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||+|.+|.|+ ++||||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV 54 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFV 54 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEE
Confidence 457899999999999999999999999999999994 679997
No 250
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.03 E-value=2.9e-10 Score=86.30 Aligned_cols=43 Identities=40% Similarity=0.713 Sum_probs=39.6
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEec--ceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--NYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k--~fgFV 346 (346)
..+.++|||+|||+++|+++|+++|++||+|++|.|.+ +||||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV 56 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFI 56 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEE
Confidence 34578999999999999999999999999999999985 89997
No 251
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=3.3e-10 Score=86.67 Aligned_cols=44 Identities=25% Similarity=0.523 Sum_probs=39.9
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEec------ceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK------NYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k------~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|++|+|++ +||||
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV 60 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFV 60 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEE
Confidence 344578999999999999999999999999999999985 79997
No 252
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=2.8e-10 Score=87.44 Aligned_cols=44 Identities=27% Similarity=0.477 Sum_probs=39.8
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|.+|.|+ ++||||
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV 70 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLV 70 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEE
Confidence 34457899999999999999999999999999999997 579997
No 253
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.02 E-value=2.6e-10 Score=84.36 Aligned_cols=40 Identities=30% Similarity=0.591 Sum_probs=37.5
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEE---------ecceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDV---------VKNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i---------~k~fgFV 346 (346)
.++|||+|||+++|+++|+++|++||+|.+|.| .++||||
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV 52 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYV 52 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEE
Confidence 578999999999999999999999999999999 4679997
No 254
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=3.7e-10 Score=84.77 Aligned_cols=44 Identities=23% Similarity=0.452 Sum_probs=39.6
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|++|.|+ ++||||
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV 63 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFI 63 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEE
Confidence 44557899999999999999999999999999999996 469997
No 255
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.02 E-value=2e-10 Score=89.02 Aligned_cols=43 Identities=37% Similarity=0.702 Sum_probs=37.0
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
..+.++|||+|||+++|+++|+++|++||+|++|.|+ ||||||
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV 72 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFV 72 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEE
Confidence 3446899999999999999999999999999999997 469997
No 256
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=3.3e-10 Score=86.90 Aligned_cols=44 Identities=30% Similarity=0.524 Sum_probs=39.5
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEec--------ceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k--------~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|++|.|++ +||||
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 62 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFV 62 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEE
Confidence 345578999999999999999999999999999999974 59997
No 257
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.01 E-value=2.9e-10 Score=86.06 Aligned_cols=41 Identities=34% Similarity=0.690 Sum_probs=37.8
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe-----------cceeeC
Q psy16419 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----------KNYGFV 346 (346)
Q Consensus 306 ~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~-----------k~fgFV 346 (346)
+.++|||+|||+++|+++|+++|++||+|++|.|+ ++||||
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV 55 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFV 55 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEE
Confidence 46799999999999999999999999999999997 369997
No 258
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=3.9e-10 Score=84.77 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=39.8
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|.+|.|+ ++||||
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV 62 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 62 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEE
Confidence 44567899999999999999999999999999999997 469997
No 259
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.01 E-value=2.3e-10 Score=86.41 Aligned_cols=41 Identities=22% Similarity=0.457 Sum_probs=38.1
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 306 ~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
|+++|||+|||+++|+++|+++|++||.|.+|+|+ ++||||
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 49 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFI 49 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEE
Confidence 46799999999999999999999999999999997 569997
No 260
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.01 E-value=3.1e-10 Score=88.67 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=39.3
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|++|+|+ |+||||
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 72 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFV 72 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEE
Confidence 33456899999999999999999999999999999997 369997
No 261
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.01 E-value=2.1e-10 Score=88.17 Aligned_cols=44 Identities=32% Similarity=0.654 Sum_probs=39.7
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|.+|.|+ |+||||
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 60 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFL 60 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEE
Confidence 34557899999999999999999999999999999997 469997
No 262
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.01 E-value=1.6e-10 Score=92.54 Aligned_cols=43 Identities=19% Similarity=0.429 Sum_probs=38.6
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEE--EEEe--------cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE--CDVV--------KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~--v~i~--------k~fgFV 346 (346)
..+.++|||+|||+++||++|+++|++||.|.. |+|+ ||||||
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV 72 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFI 72 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEE
Confidence 345789999999999999999999999999977 8886 579997
No 263
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.01 E-value=1.3e-10 Score=90.30 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=38.4
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhccc-ceEEEEEe----cceeeC
Q psy16419 306 GTFKIFIGNVNPGTSVELIRPLFEKYG-KVVECDVV----KNYGFV 346 (346)
Q Consensus 306 ~~~~lfV~nLp~~~tee~L~~~F~~~G-~I~~v~i~----k~fgFV 346 (346)
..++|||+|||+++|+++|+++|++|| +|..|+|. ||||||
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV 72 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGAL 72 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEE
Confidence 367999999999999999999999999 99999996 789997
No 264
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=5.3e-10 Score=84.98 Aligned_cols=44 Identities=20% Similarity=0.360 Sum_probs=39.7
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEec-------ceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK-------NYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k-------~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|++|.|++ +||||
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV 63 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYV 63 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEE
Confidence 344578999999999999999999999999999999974 79997
No 265
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.00 E-value=2.9e-10 Score=86.65 Aligned_cols=41 Identities=22% Similarity=0.432 Sum_probs=38.5
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--cceeeC
Q psy16419 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFV 346 (346)
Q Consensus 306 ~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--k~fgFV 346 (346)
..++|||+|||+++|+++|+++|++||.|.+|+|. |+||||
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV 68 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFI 68 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEE
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEE
Confidence 36799999999999999999999999999999997 789997
No 266
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.00 E-value=4.8e-10 Score=84.76 Aligned_cols=43 Identities=23% Similarity=0.612 Sum_probs=39.2
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEec--ceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--NYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k--~fgFV 346 (346)
..+.++|||+|||+++|+++|+++|++||+|++|.|.+ +||||
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV 58 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYI 58 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEE
Confidence 34568999999999999999999999999999999984 59997
No 267
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.00 E-value=4.1e-10 Score=86.69 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=39.5
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe-------cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~-------k~fgFV 346 (346)
..+.++|||+|||+++|+++|+++|++||+|++|+|+ ++||||
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV 75 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADV 75 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEE
Confidence 3457899999999999999999999999999999998 679997
No 268
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.00 E-value=3.3e-10 Score=85.96 Aligned_cols=42 Identities=31% Similarity=0.536 Sum_probs=38.5
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||+|++|.|+ ++||||
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 55 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFV 55 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEE
Confidence 347899999999999999999999999999999996 479997
No 269
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.00 E-value=3.5e-10 Score=86.94 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=38.4
Q ss_pred CCcceEEEecCCCCC------CHHHHHHHhhcccceEEEEEe------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGT------SVELIRPLFEKYGKVVECDVV------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~------tee~L~~~F~~~G~I~~v~i~------k~fgFV 346 (346)
...++|||+|||+.+ |+++|+++|++||+|.+|.|+ ||||||
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV 66 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFL 66 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEE
Confidence 346799999999999 789999999999999999997 689997
No 270
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=5.9e-10 Score=85.22 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=39.5
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|++|.|+ |+||||
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 62 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFV 62 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEE
Confidence 44557899999999999999999999999999999997 359997
No 271
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.99 E-value=5.3e-10 Score=86.44 Aligned_cols=44 Identities=25% Similarity=0.773 Sum_probs=39.8
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|.+|.|+ +|||||
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 73 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 73 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEE
Confidence 44557899999999999999999999999999999997 469997
No 272
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.99 E-value=2e-10 Score=89.89 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=37.8
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEec-ceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK-NYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k-~fgFV 346 (346)
.++|||+|||+++|+++|+++|++||+|++|.|++ +||||
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV 56 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVV 56 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEE
Confidence 57899999999999999999999999999999998 89997
No 273
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.99 E-value=4.3e-10 Score=84.01 Aligned_cols=42 Identities=26% Similarity=0.497 Sum_probs=38.8
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~------k~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||+|.+|+|+ |+||||
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV 53 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVV 53 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEE
Confidence 346899999999999999999999999999999997 579997
No 274
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=3e-10 Score=86.14 Aligned_cols=42 Identities=21% Similarity=0.472 Sum_probs=38.4
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceE-EEEEe--------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVV-ECDVV--------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~-~v~i~--------k~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||+|+ +|+|+ ++||||
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV 57 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFV 57 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEE
Confidence 3478999999999999999999999999999 99997 369997
No 275
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=4.7e-10 Score=85.75 Aligned_cols=43 Identities=30% Similarity=0.552 Sum_probs=39.1
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
..+.++|||+|||+++|+++|+++|++||+|++|.|+ |+||||
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV 60 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFV 60 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEE
Confidence 3457899999999999999999999999999999997 469997
No 276
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.99 E-value=4.1e-10 Score=83.19 Aligned_cols=42 Identities=33% Similarity=0.786 Sum_probs=37.5
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||+|.+|.|+ ++||||
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 53 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFV 53 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEE
Confidence 346799999999999999999999999999999997 459997
No 277
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.99 E-value=2.5e-10 Score=83.39 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=36.5
Q ss_pred ceEEEecCCCCC------CHHHHHHHhhcccceEEEEEe------cceeeC
Q psy16419 308 FKIFIGNVNPGT------SVELIRPLFEKYGKVVECDVV------KNYGFV 346 (346)
Q Consensus 308 ~~lfV~nLp~~~------tee~L~~~F~~~G~I~~v~i~------k~fgFV 346 (346)
++|||+|||+.+ |+++|+++|++||+|.+|.|. ||||||
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV 52 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFL 52 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEE
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEE
Confidence 589999999999 789999999999999999997 589997
No 278
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.98 E-value=5.9e-10 Score=84.59 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=39.4
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEE--------EEEe--------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE--------CDVV--------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~--------v~i~--------k~fgFV 346 (346)
+..+.++|||+|||+++|+++|+++|++||.|.+ |+|+ ||||||
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV 68 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATV 68 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEE
Confidence 4455789999999999999999999999999999 9887 469997
No 279
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.98 E-value=3.9e-10 Score=87.28 Aligned_cols=44 Identities=23% Similarity=0.463 Sum_probs=39.8
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|++|.|+ ++||||
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 73 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALV 73 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEE
Confidence 34557899999999999999999999999999999997 579997
No 280
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=6.2e-10 Score=83.66 Aligned_cols=42 Identities=26% Similarity=0.699 Sum_probs=38.4
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEec--------ceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k--------~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||+|++|.|++ +||||
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV 52 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 52 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEE
Confidence 3468999999999999999999999999999999974 59997
No 281
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=4.3e-10 Score=87.01 Aligned_cols=41 Identities=29% Similarity=0.681 Sum_probs=38.6
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--cceeeC
Q psy16419 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFV 346 (346)
Q Consensus 306 ~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--k~fgFV 346 (346)
+.++|||+|||+++|+++|+++|++||+|++|+|+ |+||||
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV 66 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFV 66 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEE
Confidence 46799999999999999999999999999999998 689997
No 282
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=5.1e-10 Score=85.90 Aligned_cols=44 Identities=36% Similarity=0.757 Sum_probs=39.8
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEec--------ceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k--------~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|++|.|++ +||||
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV 63 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 63 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEE
Confidence 445578999999999999999999999999999999974 59997
No 283
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=5.5e-10 Score=85.57 Aligned_cols=43 Identities=19% Similarity=0.457 Sum_probs=38.6
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe---------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~---------k~fgFV 346 (346)
+..+.++|||+|||+++|+++|+++|++|| |++|.|+ ++||||
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV 62 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYA 62 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEE
Confidence 445578999999999999999999999999 9999997 469997
No 284
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=5.9e-10 Score=85.34 Aligned_cols=42 Identities=31% Similarity=0.631 Sum_probs=38.6
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhc-ccceEEEEEe-------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEK-YGKVVECDVV-------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~-~G~I~~v~i~-------k~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++ ||+|.+|.|+ |+||||
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV 56 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFV 56 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEE
Confidence 34689999999999999999999999 9999999996 579997
No 285
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=5.7e-10 Score=86.98 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=37.7
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
.++|||+|||+++|+++|+++|++||.|.+|.|+ ++||||
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 72 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYV 72 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEE
Confidence 5789999999999999999999999999999997 579997
No 286
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.97 E-value=3.1e-10 Score=88.23 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=37.7
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--cceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--k~fgFV 346 (346)
.++|||+|||+++|+++|+++|++||.|.+|.|+ |+||||
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV 51 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIV 51 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEE
Confidence 5789999999999999999999999999999996 689997
No 287
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=6.9e-10 Score=85.13 Aligned_cols=42 Identities=19% Similarity=0.128 Sum_probs=37.9
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEE-EEEe-------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE-CDVV-------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~-v~i~-------k~fgFV 346 (346)
.+.++|||+|||+++||++|+++|++||.|.+ |.|+ ||||||
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV 62 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFV 62 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEE
Confidence 34689999999999999999999999999998 8775 679997
No 288
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.97 E-value=6.2e-10 Score=86.88 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=39.2
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe-----cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~-----k~fgFV 346 (346)
..++++|||+|||+++|+++|+++|++||.|.+|.|+ ++||||
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV 52 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYV 52 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEE
Confidence 3457899999999999999999999999999999997 579997
No 289
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=6.2e-10 Score=85.06 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=39.6
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEec--------ceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k--------~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|++|.|++ +||||
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV 62 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFI 62 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEE
Confidence 345578999999999999999999999999999999974 59997
No 290
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=8.3e-10 Score=86.33 Aligned_cols=44 Identities=34% Similarity=0.588 Sum_probs=39.7
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEec--------ceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k--------~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|++|+|++ +||||
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 64 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 64 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEE
Confidence 345578999999999999999999999999999999974 59997
No 291
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.96 E-value=2.8e-10 Score=82.04 Aligned_cols=39 Identities=41% Similarity=0.785 Sum_probs=36.2
Q ss_pred ceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 308 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 308 ~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
++|||+|||+++|+++|+++|++||+|.+|.|+ +|||||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV 47 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFV 47 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEE
Confidence 479999999999999999999999999999997 469997
No 292
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.96 E-value=6.4e-10 Score=85.55 Aligned_cols=43 Identities=30% Similarity=0.505 Sum_probs=38.9
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEec---------ceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK---------NYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k---------~fgFV 346 (346)
..+.++|||+|||+++|+++|+++|++||+|++|.|++ +||||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV 63 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFV 63 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEE
Confidence 34578999999999999999999999999999999964 59997
No 293
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.96 E-value=6.6e-10 Score=83.51 Aligned_cols=44 Identities=25% Similarity=0.547 Sum_probs=39.6
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe-------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~-------k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|++|.|+ |+||||
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV 62 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFV 62 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEE
Confidence 34457899999999999999999999999999999997 469997
No 294
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.96 E-value=4.2e-10 Score=85.88 Aligned_cols=41 Identities=34% Similarity=0.708 Sum_probs=38.1
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe-------cceeeC
Q psy16419 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFV 346 (346)
Q Consensus 306 ~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~-------k~fgFV 346 (346)
+.++|||+|||+++|+++|+++|++||.|.+|.|+ ||||||
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV 55 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFV 55 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEE
Confidence 36789999999999999999999999999999996 489997
No 295
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=4.6e-10 Score=84.88 Aligned_cols=42 Identities=14% Similarity=0.329 Sum_probs=37.5
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe----cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV----KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~----k~fgFV 346 (346)
....++|||+|||+++|+++|+++|++||.|. +.|+ ++||||
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV 61 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFL 61 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEE
Confidence 34467999999999999999999999999997 7776 789997
No 296
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.95 E-value=1.7e-09 Score=87.37 Aligned_cols=44 Identities=25% Similarity=0.517 Sum_probs=39.7
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|++|+|+ |+||||
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 89 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFV 89 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEE
Confidence 33457899999999999999999999999999999997 569997
No 297
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.95 E-value=1.1e-09 Score=83.70 Aligned_cols=43 Identities=19% Similarity=0.400 Sum_probs=38.6
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
+..+.++|||+|||+++|+++|+++|++|| |++|.|+ |+||||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV 61 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYV 61 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEE
Confidence 445578999999999999999999999997 9999997 469997
No 298
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=4.6e-10 Score=85.61 Aligned_cols=42 Identities=12% Similarity=0.456 Sum_probs=38.6
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||+|++|.|+ ++||||
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV 59 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFV 59 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEE
Confidence 457899999999999999999999999999999995 569997
No 299
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.95 E-value=1.1e-09 Score=85.41 Aligned_cols=44 Identities=34% Similarity=0.814 Sum_probs=39.6
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||.|++|+|+ ++||||
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 62 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 62 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEE
Confidence 34457899999999999999999999999999999997 459997
No 300
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.95 E-value=6e-10 Score=88.43 Aligned_cols=44 Identities=27% Similarity=0.477 Sum_probs=39.8
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||.|.+|.|+ ++||||
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 69 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLV 69 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEE
Confidence 34457899999999999999999999999999999997 679997
No 301
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.95 E-value=2.9e-10 Score=84.76 Aligned_cols=39 Identities=23% Similarity=0.413 Sum_probs=35.1
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccc--ceEEEEEe--------cceeeC
Q psy16419 308 FKIFIGNVNPGTSVELIRPLFEKYG--KVVECDVV--------KNYGFV 346 (346)
Q Consensus 308 ~~lfV~nLp~~~tee~L~~~F~~~G--~I~~v~i~--------k~fgFV 346 (346)
.+|||+|||+++|+++|+++|++|| .|.+|+|+ ||||||
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV 50 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALV 50 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEE
Confidence 4799999999999999999999999 99999997 469997
No 302
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.94 E-value=2.7e-10 Score=91.81 Aligned_cols=40 Identities=30% Similarity=0.551 Sum_probs=37.2
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
.++|||+|||+++|+++|+++|++||+|++|+|+ |+||||
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV 94 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 94 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEE
Confidence 5789999999999999999999999999999997 459997
No 303
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.94 E-value=7.2e-10 Score=86.86 Aligned_cols=42 Identities=29% Similarity=0.562 Sum_probs=38.7
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEec-------ceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK-------NYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k-------~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||.|++|.|++ +||||
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV 53 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFI 53 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEE
Confidence 3467999999999999999999999999999999984 79997
No 304
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=5.3e-10 Score=86.35 Aligned_cols=42 Identities=26% Similarity=0.422 Sum_probs=38.7
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccc-eEEEEEe---------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGK-VVECDVV---------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~-I~~v~i~---------k~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||. |++|.|+ |+||||
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV 57 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFV 57 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEE
Confidence 34789999999999999999999999999 9999997 579997
No 305
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.94 E-value=2.8e-10 Score=86.68 Aligned_cols=40 Identities=28% Similarity=0.358 Sum_probs=37.6
Q ss_pred cceEEEecCCC------CCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 307 TFKIFIGNVNP------GTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~------~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
.++|||+|||+ ++|+++|+++|++||+|.+|+|+ ||||||
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV 59 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFV 59 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEE
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEE
Confidence 57899999999 99999999999999999999996 689997
No 306
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=7e-10 Score=84.84 Aligned_cols=41 Identities=7% Similarity=0.027 Sum_probs=36.6
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe-------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~-------k~fgFV 346 (346)
.+.++|||+|||+++||++|+++|++|| |++|.|+ |+||||
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV 60 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADV 60 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEE
Confidence 4467999999999999999999999999 5599997 569997
No 307
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.93 E-value=8.6e-10 Score=88.10 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=39.9
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|++|+|+ |+||||
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV 93 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 93 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEE
Confidence 44567899999999999999999999999999999997 469997
No 308
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.93 E-value=7.4e-10 Score=83.58 Aligned_cols=42 Identities=21% Similarity=0.515 Sum_probs=39.0
Q ss_pred CCcceEEEecCCCCCCHHHHH----HHhhcccceEEEEEe-----cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIR----PLFEKYGKVVECDVV-----KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~----~~F~~~G~I~~v~i~-----k~fgFV 346 (346)
.+.++|||+|||+++|+++|+ ++|++||.|.+|.|. ++||||
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV 56 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFV 56 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEE
Confidence 447899999999999999999 999999999999997 689997
No 309
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.92 E-value=3.8e-10 Score=80.99 Aligned_cols=38 Identities=39% Similarity=0.821 Sum_probs=35.5
Q ss_pred eEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 309 ~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
+|||+|||+++|+++|+++|++||+|.+|.|+ ++||||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 46 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFV 46 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEE
Confidence 59999999999999999999999999999996 469997
No 310
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=6.7e-10 Score=86.71 Aligned_cols=43 Identities=12% Similarity=0.016 Sum_probs=38.9
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccce-EEEEEe-------cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKV-VECDVV-------KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I-~~v~i~-------k~fgFV 346 (346)
..+.++|||+|||+++|+++|+++|++||.| .+|.|+ ||||||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV 62 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALV 62 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEE
Confidence 3456899999999999999999999999999 899996 689997
No 311
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.92 E-value=7.5e-10 Score=91.45 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=37.1
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhccc--ceEEEEEe--------cceeeC
Q psy16419 306 GTFKIFIGNVNPGTSVELIRPLFEKYG--KVVECDVV--------KNYGFV 346 (346)
Q Consensus 306 ~~~~lfV~nLp~~~tee~L~~~F~~~G--~I~~v~i~--------k~fgFV 346 (346)
..++|||+|||+++||++|+++|++|| .|.+|+|+ ||||||
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV 104 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEV 104 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEE
Confidence 357999999999999999999999999 99999997 569997
No 312
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=1e-09 Score=83.68 Aligned_cols=42 Identities=36% Similarity=0.662 Sum_probs=38.5
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEec--------ceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k--------~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||+|++|.|++ +||||
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV 59 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFV 59 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEE
Confidence 4478999999999999999999999999999999974 59997
No 313
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.91 E-value=1e-09 Score=87.37 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=38.0
Q ss_pred CCCcceEEEecCCCCCCHHHHH----HHhhcccceEEEEEe-----cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIR----PLFEKYGKVVECDVV-----KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~----~~F~~~G~I~~v~i~-----k~fgFV 346 (346)
..+.++|||+|||+++|+++|+ ++|++||+|++|.|. ||||||
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV 77 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYI 77 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEE
Confidence 3457899999999999999876 699999999999985 589997
No 314
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.8e-09 Score=84.00 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=39.0
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe-------cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~-------k~fgFV 346 (346)
..+.++|||+|||+++|+++|+++|++||+|++|+|+ ++||||
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV 61 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTV 61 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEE
Confidence 3457899999999999999999999999999999997 469997
No 315
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=5.7e-10 Score=83.61 Aligned_cols=42 Identities=29% Similarity=0.557 Sum_probs=36.8
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccc-eEEEEEe-cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGK-VVECDVV-KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~-I~~v~i~-k~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||. |..+.+. ++||||
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV 49 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFV 49 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEE
Confidence 34679999999999999999999999999 6666664 789997
No 316
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=6.2e-10 Score=83.83 Aligned_cols=42 Identities=29% Similarity=0.724 Sum_probs=38.3
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEE-EEec--------ceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVEC-DVVK--------NYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v-~i~k--------~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||+|.+| +|++ +||||
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV 53 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFI 53 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEE
Confidence 346899999999999999999999999999999 9974 59997
No 317
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=2e-09 Score=83.83 Aligned_cols=44 Identities=14% Similarity=0.434 Sum_probs=39.5
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe-------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~-------k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|.+|+|+ |+||||
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV 71 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFA 71 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEE
Confidence 33457899999999999999999999999999999997 469997
No 318
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=4.2e-09 Score=82.41 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=65.6
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC--HHHHHHHHHhC--CcEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDN-TRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS--PDINKCIKELN--GMMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~-~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~--~~a~~Ai~~l~--g~~~~g~~l~v~~a~~ 114 (346)
..++-|||+||++. +++++|+++|++||.|..|.+. ...|||+|.+ ++|..|+..|| +..|+|..++++....
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 56899999999999 9999999999999999999999 5689999999 68999999994 7788998888887654
No 319
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=7e-10 Score=86.58 Aligned_cols=40 Identities=33% Similarity=0.702 Sum_probs=36.1
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe-----------cceeeC
Q psy16419 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----------KNYGFV 346 (346)
Q Consensus 306 ~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~-----------k~fgFV 346 (346)
+.++|||+|||+++|+++|+++|++||+|. +.++ ||||||
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV 57 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFL 57 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEE
Confidence 367899999999999999999999999999 7765 579997
No 320
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.89 E-value=1e-09 Score=86.29 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=38.5
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccc---eEEEEEe-------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGK---VVECDVV-------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~---I~~v~i~-------k~fgFV 346 (346)
.+.++|||+|||+++||++|+++|++||. |.+|+|+ ||||||
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV 66 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFV 66 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEE
Confidence 34688999999999999999999999999 8999997 579997
No 321
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.89 E-value=3.7e-10 Score=81.02 Aligned_cols=38 Identities=34% Similarity=0.728 Sum_probs=35.6
Q ss_pred eEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 309 ~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
+|||+|||+++|+++|+++|++||+|.+|.|+ ++||||
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 46 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 46 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEE
Confidence 59999999999999999999999999999996 569997
No 322
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=9.4e-10 Score=84.14 Aligned_cols=40 Identities=33% Similarity=0.639 Sum_probs=37.7
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
.++|||+|||+++|+++|+++|++||+|.+|.|+ ++||||
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV 55 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFC 55 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEE
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEE
Confidence 5789999999999999999999999999999997 579997
No 323
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.88 E-value=1.7e-09 Score=80.11 Aligned_cols=40 Identities=25% Similarity=0.585 Sum_probs=37.3
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
.++|||+|||+++|+++|+++|++||+|.+|.|+ ++||||
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 53 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYI 53 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEE
Confidence 5789999999999999999999999999999997 459997
No 324
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.88 E-value=1.7e-09 Score=85.56 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=39.8
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe-------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~-------k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|++|+|+ ++||||
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV 81 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADV 81 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEE
Confidence 34557899999999999999999999999999999996 479997
No 325
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.88 E-value=1.3e-09 Score=80.46 Aligned_cols=42 Identities=24% Similarity=0.535 Sum_probs=38.8
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcc----c-------ceEEEEEe--cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKY----G-------KVVECDVV--KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~----G-------~I~~v~i~--k~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++| | +|.+|.+. |+||||
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV 58 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFL 58 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEE
Confidence 346899999999999999999999999 8 99999998 789997
No 326
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=8.3e-10 Score=86.31 Aligned_cols=41 Identities=37% Similarity=0.758 Sum_probs=37.9
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhcccceEEEEEec--------ceeeC
Q psy16419 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--------NYGFV 346 (346)
Q Consensus 306 ~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k--------~fgFV 346 (346)
+.++|||+|||+++|+++|+++|++||+|++|.|++ +||||
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 74 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFV 74 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEE
Confidence 357899999999999999999999999999999974 59997
No 327
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.87 E-value=7.1e-10 Score=84.41 Aligned_cols=43 Identities=19% Similarity=0.457 Sum_probs=35.9
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe---------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~---------k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++|| |.+|+|+ ||||||
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV 66 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYA 66 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEE
Confidence 344578999999999999999999999999 9999996 469997
No 328
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.87 E-value=2.1e-09 Score=86.66 Aligned_cols=44 Identities=14% Similarity=0.460 Sum_probs=39.7
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||+|++|+|+ |+||||
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV 110 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFV 110 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEE
Confidence 34457899999999999999999999999999999996 569997
No 329
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.87 E-value=4.1e-10 Score=83.83 Aligned_cols=39 Identities=33% Similarity=0.757 Sum_probs=36.7
Q ss_pred ceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 308 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 308 ~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
++|||+|||+++|+++|+++|++||+|++|.|+ ++||||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 48 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFV 48 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEE
Confidence 579999999999999999999999999999997 569997
No 330
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=7.9e-10 Score=87.61 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=38.1
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
+..+.++|||+|||+++|+++|+++|++||.|.++.++ ||||||
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV 72 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFV 72 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEE
Confidence 34456899999999999999999999999999885543 689997
No 331
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.87 E-value=1.5e-09 Score=85.90 Aligned_cols=40 Identities=20% Similarity=0.575 Sum_probs=37.5
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
.++|||+|||+++|+++|+++|++||+|++|.|+ ++||||
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 83 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYI 83 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEE
Confidence 5789999999999999999999999999999997 569997
No 332
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=1.1e-09 Score=86.74 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=36.9
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhcccce----EEEEEe-------cceeeC
Q psy16419 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKV----VECDVV-------KNYGFV 346 (346)
Q Consensus 306 ~~~~lfV~nLp~~~tee~L~~~F~~~G~I----~~v~i~-------k~fgFV 346 (346)
+..+|||+|||+++||++|+++|++||+| .+|.|+ ||||||
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV 73 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFV 73 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEE
Confidence 36799999999999999999999999975 689886 579997
No 333
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.86 E-value=1.2e-09 Score=83.20 Aligned_cols=39 Identities=23% Similarity=0.553 Sum_probs=36.6
Q ss_pred ceEEEecCCCCCCHHHHHHHhhcccceEEEEEe---cceeeC
Q psy16419 308 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---KNYGFV 346 (346)
Q Consensus 308 ~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~---k~fgFV 346 (346)
++|||+|||+++|+++|+++|++||+|++|.|+ ++||||
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV 42 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFV 42 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEE
Confidence 479999999999999999999999999999996 569997
No 334
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.86 E-value=2.6e-09 Score=88.08 Aligned_cols=43 Identities=26% Similarity=0.348 Sum_probs=39.2
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
..+.++|||+|||+++|+++|+++|++||+|++|.|+ |+||||
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 86 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFV 86 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEE
Confidence 3457899999999999999999999999999999996 469997
No 335
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.86 E-value=9.7e-10 Score=83.14 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=37.6
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
...++|||+|||+++|+++|+++|++||.|.++.++ |+||||
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV 62 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMV 62 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEE
Confidence 346889999999999999999999999999988775 579997
No 336
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.85 E-value=1.5e-09 Score=87.34 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=38.3
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccc---eEEEEEe-------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGK---VVECDVV-------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~---I~~v~i~-------k~fgFV 346 (346)
.+.++|||+|||+++||++|+++|++||. |.+|.|+ ||||||
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV 93 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFV 93 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEE
Confidence 34679999999999999999999999999 8999997 579997
No 337
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.85 E-value=7.1e-10 Score=83.34 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=36.9
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
.++|||+|||+++|+++|+++|++||.|.++.++ |+||||
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV 62 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMV 62 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEE
Confidence 5799999999999999999999999999988886 479997
No 338
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.84 E-value=1.1e-09 Score=84.35 Aligned_cols=42 Identities=10% Similarity=0.068 Sum_probs=38.1
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccc---eEEEEEe-------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGK---VVECDVV-------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~---I~~v~i~-------k~fgFV 346 (346)
...++|||+|||+++|+++|+++|++||. |.+|.|+ ||||||
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV 60 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALI 60 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEE
Confidence 34678999999999999999999999998 9999997 569997
No 339
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=1.7e-09 Score=83.73 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=36.6
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe-------cceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~-------k~fgFV 346 (346)
..+|||+|||+++||++|+++|++| .|++|.|+ ||||||
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV 61 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLV 61 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEE
Confidence 5789999999999999999999999 89999997 679997
No 340
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.83 E-value=2.4e-09 Score=94.14 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=37.0
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhccc--ceEEEEEe--------cceeeC
Q psy16419 306 GTFKIFIGNVNPGTSVELIRPLFEKYG--KVVECDVV--------KNYGFV 346 (346)
Q Consensus 306 ~~~~lfV~nLp~~~tee~L~~~F~~~G--~I~~v~i~--------k~fgFV 346 (346)
..++|||+|||+++||++|+++|++|| +|++|+|+ |+||||
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV 117 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALV 117 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEE
Confidence 367899999999999999999999999 99999997 569997
No 341
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.83 E-value=2.5e-09 Score=83.02 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=39.2
Q ss_pred CCCCcceEEEecCCCCCCHHHHH---HHhhcccceEEEEEec-----------ceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIR---PLFEKYGKVVECDVVK-----------NYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~---~~F~~~G~I~~v~i~k-----------~fgFV 346 (346)
...+.++|||+|||+++|+++|+ ++|++||+|++|.|++ +||||
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV 68 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYV 68 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEE
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEE
Confidence 34457899999999999999999 9999999999999973 59997
No 342
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=5.9e-09 Score=78.70 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=37.1
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--k~fgFV 346 (346)
..+.++|||+|| ++|+++|+++|++||+|.+|.|. |+||||
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV 54 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV 54 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEE
Confidence 345789999996 89999999999999999999997 789997
No 343
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.82 E-value=3.6e-09 Score=84.12 Aligned_cols=40 Identities=15% Similarity=0.487 Sum_probs=36.6
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe---cce-eeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV---KNY-GFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~---k~f-gFV 346 (346)
...|||+||++.+|+++|+++|++||+|.+|.|+ |+| |||
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFV 71 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 71 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEE
Confidence 5679999999999999999999999999999997 457 997
No 344
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=6.7e-09 Score=76.73 Aligned_cols=72 Identities=21% Similarity=0.261 Sum_probs=61.8
Q ss_pred CCCcEEEEcCCCCC-----CCH----HHHHHhhcCCCCeEEEEEECCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEE
Q psy16419 42 TPTTKVFVGNLSDN-----TRA----PEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVV 111 (346)
Q Consensus 42 ~~~~~lfV~nLp~~-----~~e----~~L~~~F~~~G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~ 111 (346)
++..||+|.-++.. +-+ .+|.+.|++||.|..+++...-+||+|.+ ++|.+||. |||..++|+.|+|++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKVKGRAVKISG 91 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEETTEEEEEEC
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeeeCCeEEEEec
Confidence 55789999877643 322 46899999999999999998889999999 99999998 999999999999987
Q ss_pred eec
Q psy16419 112 AGF 114 (346)
Q Consensus 112 a~~ 114 (346)
..+
T Consensus 92 k~~ 94 (95)
T 1ufw_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 544
No 345
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.82 E-value=1.2e-09 Score=88.33 Aligned_cols=40 Identities=10% Similarity=0.041 Sum_probs=36.6
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe-------cceeeC
Q psy16419 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFV 346 (346)
Q Consensus 306 ~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~-------k~fgFV 346 (346)
..++|||+|||+++||++|+++|++|| |++|.|+ ||||||
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV 91 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADV 91 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEE
Confidence 467899999999999999999999999 7799997 579997
No 346
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.82 E-value=3.6e-09 Score=83.96 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=36.6
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceE--EEEEe-------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVV--ECDVV-------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~--~v~i~-------k~fgFV 346 (346)
.+.++|||+|||+++||++|+++|++| .|+ +|+|+ ||||||
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV 89 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFV 89 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEE
Confidence 346789999999999999999999999 677 89987 679997
No 347
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.81 E-value=3e-09 Score=87.80 Aligned_cols=40 Identities=15% Similarity=0.404 Sum_probs=37.1
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe----cceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV----KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~----k~fgFV 346 (346)
..+|||+||++.+|+++|+++|++||+|++|.|. ++||||
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFV 89 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 89 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEE
Confidence 5679999999999999999999999999999997 459997
No 348
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.81 E-value=6.8e-09 Score=82.04 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=36.0
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEec--ce-eeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK--NY-GFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k--~f-gFV 346 (346)
...|||+||++.+|+++|+++|++||+|.+|.|++ || |||
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFV 67 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMV 67 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEE
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEE
Confidence 34578999999999999999999999999999974 66 997
No 349
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=3.3e-09 Score=82.42 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=38.8
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceE--------EEEEe--------cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVV--------ECDVV--------KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~--------~v~i~--------k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||.|. .|+|+ |+||||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV 70 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 70 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEE
Confidence 334578999999999999999999999999999 68886 459997
No 350
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=3.7e-09 Score=82.35 Aligned_cols=43 Identities=12% Similarity=0.377 Sum_probs=37.9
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccce----EEEEEe----cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKV----VECDVV----KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I----~~v~i~----k~fgFV 346 (346)
..+.++|||+|||+++|+++|+++|++||.| +.+++. |+||||
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV 72 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFI 72 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEE
Confidence 3457899999999999999999999999999 666665 689997
No 351
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.80 E-value=3.3e-09 Score=78.64 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=36.6
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--cceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--k~fgFV 346 (346)
.++|||+|||+++|+++|+++|++| +|.+|+|. |+||||
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV 45 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFV 45 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEE
Confidence 5789999999999999999999999 99999986 789997
No 352
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=6.8e-09 Score=77.88 Aligned_cols=40 Identities=18% Similarity=0.370 Sum_probs=34.8
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEecc---eeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN---YGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k~---fgFV 346 (346)
.++|||+|||+++|+++|+++|++||+|.+|.+-+. ||||
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV 50 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIV 50 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEE
Confidence 579999999999999999999999999999833221 9997
No 353
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.76 E-value=1.7e-09 Score=82.35 Aligned_cols=41 Identities=29% Similarity=0.560 Sum_probs=35.7
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||.|.+ .++ |+||||
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV 63 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYV 63 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEE
Confidence 34689999999999999999999999999887 332 679997
No 354
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=1e-08 Score=76.30 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=37.4
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe-------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~-------k~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++| .|.+|.|+ +|||||
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV 55 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFV 55 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEE
Confidence 346899999999999999999999999 99999997 459997
No 355
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.74 E-value=4.7e-09 Score=92.29 Aligned_cols=42 Identities=26% Similarity=0.464 Sum_probs=38.9
Q ss_pred CCcceEEEecCCCCC---------CHHHHHHHhhcccceEEEEEe--cceeeC
Q psy16419 305 VGTFKIFIGNVNPGT---------SVELIRPLFEKYGKVVECDVV--KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~---------tee~L~~~F~~~G~I~~v~i~--k~fgFV 346 (346)
...++|||+||+.++ ||++|+++|++||+|++|+|+ ||||||
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV 184 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFV 184 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEE
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEE
Confidence 346899999999998 799999999999999999998 789998
No 356
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=6.7e-09 Score=78.92 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=35.6
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEE----ecceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDV----VKNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i----~k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|++||.|.-+.. .|+||||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV 58 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFI 58 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEE
Confidence 3445789999999999999999999999999832222 2679997
No 357
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.72 E-value=6.4e-09 Score=78.23 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=37.2
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEE---ecceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDV---VKNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i---~k~fgFV 346 (346)
..+.++|||+|||+++|+++|+++|++||.|..+.. .+|||||
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV 58 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYI 58 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEE
Confidence 345789999999999999999999999999988822 3789997
No 358
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.70 E-value=7.1e-09 Score=84.12 Aligned_cols=43 Identities=14% Similarity=0.313 Sum_probs=36.8
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEE--------EEe-----cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVEC--------DVV-----KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v--------~i~-----k~fgFV 346 (346)
..+.++|||+|||+++|+++|+++|++||.|.+| .+. +|||||
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV 97 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFI 97 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEE
Confidence 4457899999999999999999999999998774 332 689997
No 359
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.69 E-value=1.1e-08 Score=86.26 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=39.2
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe-------cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~-------k~fgFV 346 (346)
..+.++|||+|||+++|+++|+++|++||+|++|.|+ ++||||
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV 134 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADV 134 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEE
Confidence 3457899999999999999999999999999999997 479997
No 360
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.69 E-value=1.3e-08 Score=97.77 Aligned_cols=43 Identities=28% Similarity=0.503 Sum_probs=39.5
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--------cceeeC
Q psy16419 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346 (346)
Q Consensus 304 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--------k~fgFV 346 (346)
..+.++|||+|||++||+++|+++|++||+|++|.|+ +|||||
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV 149 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFI 149 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEE
Confidence 3456899999999999999999999999999999996 679998
No 361
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.69 E-value=1.1e-08 Score=80.67 Aligned_cols=40 Identities=18% Similarity=0.407 Sum_probs=36.7
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe--cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~--k~fgFV 346 (346)
.+.++|||+|| ++|+++|+++|++||+|.+|.|. |+||||
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV 78 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV 78 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEE
Confidence 44789999996 69999999999999999999998 789997
No 362
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.13 E-value=2.1e-09 Score=84.03 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=37.6
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhcccceEE--------EEEe--------cceeeC
Q psy16419 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVE--------CDVV--------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~--------v~i~--------k~fgFV 346 (346)
.+.++|||+|||+++|+++|+++|++||.|.+ |.|+ |+||||
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV 62 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATV 62 (116)
Confidence 34678999999999999999999999999999 7776 469997
No 363
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.67 E-value=1.6e-08 Score=86.37 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=37.7
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEe-------cceeeC
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFV 346 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~-------k~fgFV 346 (346)
.++|||+|||+++|+++|+++|++||+|.+|+|+ ||||||
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFV 155 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFV 155 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEE
Confidence 5789999999999999999999999999999997 589997
No 364
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1.9e-08 Score=75.57 Aligned_cols=41 Identities=29% Similarity=0.424 Sum_probs=35.7
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhcccceEEEE-Eecc----eeeC
Q psy16419 306 GTFKIFIGNVNPGTSVELIRPLFEKYGKVVECD-VVKN----YGFV 346 (346)
Q Consensus 306 ~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~-i~k~----fgFV 346 (346)
..++|||+|||+++|+++|+++|++||+|.+|+ |+++ .|||
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV 59 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNV 59 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEE
Confidence 467899999999999999999999999999995 7643 4775
No 365
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=3.2e-08 Score=75.19 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=34.6
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhcccceEEEEEe-----cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~-----k~fgFV 346 (346)
...+.++|||+|||+++|+++|+++|+.|+.|.-+.-. |+||||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV 59 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFV 59 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEE
Confidence 44567899999999999999999999988644333221 579997
No 366
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=3.8e-08 Score=72.98 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=32.8
Q ss_pred cce-EEEecCCCCCCHHH----HHHHhhcc-cceEEEEEecceeeC
Q psy16419 307 TFK-IFIGNVNPGTSVEL----IRPLFEKY-GKVVECDVVKNYGFV 346 (346)
Q Consensus 307 ~~~-lfV~nLp~~~tee~----L~~~F~~~-G~I~~v~i~k~fgFV 346 (346)
..+ |||+|||+++++++ |+++|++| |+|.+| ..|||||
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tgG~AfV 51 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TGCSAIL 51 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CTTCEEE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ecCEEEE
Confidence 445 99999999999988 55899999 599999 4599997
No 367
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.49 E-value=1.6e-07 Score=81.77 Aligned_cols=59 Identities=25% Similarity=0.235 Sum_probs=54.4
Q ss_pred CCHHHHHHhhcCCCCeEEEEEE------------CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 56 TRAPEVRELFVPYGTVVECDIV------------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 56 ~~e~~L~~~F~~~G~v~~~~i~------------~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
-.+++|++.|++||.|.++.|. +|++||+|.+ ++|.+|+..|||..++||.|.+.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4567899999999999999986 5899999999 999999999999999999999999865
No 368
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.39 E-value=1.3e-06 Score=65.78 Aligned_cols=72 Identities=17% Similarity=0.122 Sum_probs=65.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCC-----CCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVPY-----GTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~~-----G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
...++|-+-|||..+++..|+.+.+.+ |.++.+.+. -+-|+|+|.+ ..|-+|.-.|+|.+|.|++|+|.-..
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv~ 98 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTIN 98 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECHH
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecCHH
Confidence 456788899999999999999999999 999999888 6889999999 99999999999999999999997543
No 369
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=2.6e-07 Score=72.25 Aligned_cols=42 Identities=19% Similarity=0.149 Sum_probs=38.5
Q ss_pred CCcceEEEecCCCC-CCHHHHHHHhhcccceEEEEEecc--eeeC
Q psy16419 305 VGTFKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKN--YGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~~-~tee~L~~~F~~~G~I~~v~i~k~--fgFV 346 (346)
.+++.|||+||+++ +|+++|+++|++||+|..|++++| .|||
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfV 60 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGII 60 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEE
Confidence 34789999999999 999999999999999999999976 7876
No 370
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.18 E-value=1.9e-06 Score=66.58 Aligned_cols=44 Identities=16% Similarity=0.096 Sum_probs=36.1
Q ss_pred CCCCcceEEEecCCCCCC-----------HHHHHHHhhcccceEEEEEe----cceeeC
Q psy16419 303 SSVGTFKIFIGNVNPGTS-----------VELIRPLFEKYGKVVECDVV----KNYGFV 346 (346)
Q Consensus 303 ~~~~~~~lfV~nLp~~~t-----------ee~L~~~F~~~G~I~~v~i~----k~fgFV 346 (346)
...++++|+|+||....+ +++|+++|++||+|.+|.|. ||||||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV 69 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASV 69 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEE
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEE
Confidence 334578999999954432 68999999999999999775 789997
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=3.3e-06 Score=63.91 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHhhcccceEEEEEe---cceeeC
Q psy16419 317 PGTSVELIRPLFEKYGKVVECDVV---KNYGFV 346 (346)
Q Consensus 317 ~~~tee~L~~~F~~~G~I~~v~i~---k~fgFV 346 (346)
.++||++|+++|++||+|++|.|+ ||||||
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFV 59 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVV 59 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEE
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEE
Confidence 568999999999999999999996 789997
No 372
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.16 E-value=1.9e-06 Score=65.91 Aligned_cols=42 Identities=24% Similarity=0.242 Sum_probs=34.8
Q ss_pred CCcceEEEecCCC-----CCCHHHHHHHhhcccceEEEEEe---------cceeeC
Q psy16419 305 VGTFKIFIGNVNP-----GTSVELIRPLFEKYGKVVECDVV---------KNYGFV 346 (346)
Q Consensus 305 ~~~~~lfV~nLp~-----~~tee~L~~~F~~~G~I~~v~i~---------k~fgFV 346 (346)
.+++.|+|+||.. +-++++|+++|++||+|++|.|+ ||||||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV 61 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFL 61 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEE
Confidence 3467899999963 34799999999999999999997 468887
No 373
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.71 E-value=4.3e-05 Score=58.26 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=32.5
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 35 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~ 35 (346)
|||+|++.++|++|++.|||+.+.|+.|.|.+..
T Consensus 62 ~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 62 IFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp EEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 7999999999999999999999999999998865
No 374
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=97.69 E-value=4.1e-05 Score=58.23 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=32.1
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeec
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAA 34 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~ 34 (346)
.|||+|++.++|++|++.|||+.+.|+.|.|.++
T Consensus 70 ~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 70 NVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred EEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 3899999999999999999999999999999875
No 375
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.64 E-value=6.1e-05 Score=58.30 Aligned_cols=35 Identities=11% Similarity=0.043 Sum_probs=33.1
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 35 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~ 35 (346)
.|||+|++.++|++|++.|||+.+.|+.|.|.++.
T Consensus 57 ~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 57 NVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp CEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 48999999999999999999999999999999875
No 376
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=97.58 E-value=8.3e-05 Score=57.91 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=32.5
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 35 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~ 35 (346)
|||+|++.++|++|++.|||+.+.|+.|.|.+..
T Consensus 74 ~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 74 IFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp EEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 7999999999999999999999999999998865
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.47 E-value=0.00012 Score=53.67 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=32.1
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 36 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~ 36 (346)
+||+|++.++|.+|++ |||..+.|+.|+|+.+.+
T Consensus 52 ~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 52 MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 7999999999999998 999999999999998764
No 378
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.41 E-value=0.00033 Score=52.52 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=60.6
Q ss_pred CcEEEEcCCCCCC-C----HHHHHHhhcCCCCeEEEEEEC--CEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 44 TTKVFVGNLSDNT-R----APEVRELFVPYGTVVECDIVR--NYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 44 ~~~lfV~nLp~~~-~----e~~L~~~F~~~G~v~~~~i~~--g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
.++|+|.||+.++ . .+.++++|..|+++......+ .-..|.|.+ ++|.+|-..|++..+.|++|+|-++.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 4789999998754 2 257899999999998887774 345899999 999999999999999999999999876
No 379
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.26 E-value=0.0015 Score=48.67 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=61.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcC-----CCCeEEEEEECCEEEEEecC-HHHHHHHHHhCCcEECCEEEEEEEeec
Q psy16419 42 TPTTKVFVGNLSDNTRAPEVRELFVP-----YGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVAGF 114 (346)
Q Consensus 42 ~~~~~lfV~nLp~~~~e~~L~~~F~~-----~G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 114 (346)
....+|.|.|||+.++++.|+-+|+. =|.|.++....+-|+|+|.+ +.|++.+.. ..+.+.+.+|.|....+
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCC
Confidence 34678999999999999999999976 27899998888999999999 888888763 46788899999977655
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.09 E-value=0.00045 Score=50.88 Aligned_cols=33 Identities=12% Similarity=0.268 Sum_probs=30.7
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 35 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~ 35 (346)
+||+|.+.++|.+||+ |||..+.|+.|+|+.-.
T Consensus 61 ~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 61 MLVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp EEEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred EEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 7999999999999999 99999999999998643
No 381
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=96.94 E-value=0.00019 Score=58.11 Aligned_cols=99 Identities=16% Similarity=0.271 Sum_probs=61.5
Q ss_pred HHHHHhhcCCCCeEEEEEECCEEEEEec--------C-HHH---HHHHHHhCCc--EECCEEEEEEEeecc---------
Q psy16419 59 PEVRELFVPYGTVVECDIVRNYGFVHID--------S-PDI---NKCIKELNGM--MVDGKPMKVVVAGFI--------- 115 (346)
Q Consensus 59 ~~L~~~F~~~G~v~~~~i~~g~afV~f~--------~-~~a---~~Ai~~l~g~--~~~g~~l~v~~a~~~--------- 115 (346)
+|+.++|...|.|+.....||||||.-. . ++. ..+|. ..+. .-.|..+........
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~-~~g~~~l~eG~~V~f~~~~g~kG~~A~~V~ 80 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLH-MEGFRSLKEGEAVEFTFKKSAKGLESIRVT 80 (148)
T ss_dssp ----CCEEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBC-SSSSCCCCTTCEEEEEEEEETTEEEEEEEE
T ss_pred CcccccccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhc-ccCCccCCCCCEEEEEEEEccccchhhccc
Confidence 5677888888999888777999999976 1 221 12222 1221 124555444443321
Q ss_pred --------CCCCCccCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy16419 116 --------SSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKSKSSHK 160 (346)
Q Consensus 116 --------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
...+.+.+...||+|+..||++++|+.... ...||.++..+|.
T Consensus 81 ~pgg~pv~GS~rrp~~~~~C~~Cg~~GH~a~~C~~~~~--~~~C~~Cg~~GH~ 131 (148)
T 3ts2_A 81 GPGGVFCIGSERRPKGGDRCYNCGGLDHHAKECKLPPQ--PKKCHFCQSINHM 131 (148)
T ss_dssp SGGGCCCCCCTTSCCCSCCCTTTCCSSCCGGGCCSCCC--CCCCTTTCCSSCC
T ss_pred ccCCccccccccccCCCCcccEeCCccchhhhCCCCCC--CCcccccCCcCCE
Confidence 111223335679999999999999997543 4589999999988
No 382
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.93 E-value=0.0043 Score=45.57 Aligned_cols=59 Identities=14% Similarity=0.219 Sum_probs=51.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE----------CCEEEEEecC-HHHHHHHHHhCCcEEC
Q psy16419 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV----------RNYGFVHIDS-PDINKCIKELNGMMVD 103 (346)
Q Consensus 45 ~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~----------~g~afV~f~~-~~a~~Ai~~l~g~~~~ 103 (346)
++|.|++||+.+||+++.+.++....+...... -.-|||.|.+ +++..-.+.++|+.+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 579999999999999999999999887766655 2479999999 9999999999999873
No 383
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.35 E-value=0.011 Score=43.53 Aligned_cols=52 Identities=13% Similarity=0.298 Sum_probs=42.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEECCEEEEEecC-HHHHHHHHHh
Q psy16419 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKEL 97 (346)
Q Consensus 45 ~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l 97 (346)
..++| ++|+++...||.++|+.||.|.=-.|.---|||.|.+ +.|..|+..+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhc
Confidence 44555 9999999999999999999654333337899999999 9999999866
No 384
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.29 E-value=0.0089 Score=44.18 Aligned_cols=51 Identities=12% Similarity=0.359 Sum_probs=42.3
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-CCEEEEEecC-HHHHHHHHHhC
Q psy16419 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-RNYGFVHIDS-PDINKCIKELN 98 (346)
Q Consensus 46 ~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-~g~afV~f~~-~~a~~Ai~~l~ 98 (346)
.++| ++|+++...||.++|+.||.|. |..+ ---|||.|.+ +.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~-I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEE-EEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 3455 9999999999999999999443 3333 7899999999 99999998764
No 385
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.06 E-value=0.032 Score=42.87 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=57.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE--CCEEEEEecC-HHHHHHHHHhCCcEECC-EEEEEEEe
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--RNYGFVHIDS-PDINKCIKELNGMMVDG-KPMKVVVA 112 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~--~g~afV~f~~-~~a~~Ai~~l~g~~~~g-~~l~v~~a 112 (346)
..+-|.|-+.|+.. ...+.+.|++||.|.+.... ...-.|.|.+ .+|++|+. .||..++| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 36788899999885 56777889999999988875 5799999999 99999998 49999985 67777774
No 386
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=94.85 E-value=0.027 Score=51.85 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=29.1
Q ss_pred CeEEEecCHHHHHHHHHHhCCCeeC---Ce--eeEEeecC
Q psy16419 1 MSSGHMENDEEGRTAIKELNGQIVN---EK--PLKIEAAT 35 (346)
Q Consensus 1 ~aFV~F~~~e~A~~Al~~lng~~l~---g~--~i~v~~~~ 35 (346)
.|||+|++.++|++|++.|||..+. |+ .+++.+..
T Consensus 58 faFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 58 YSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp EEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred EEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 4899999999999999999998883 44 57777653
No 387
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.81 E-value=0.04 Score=41.53 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=29.7
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEee
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEA 33 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~ 33 (346)
|+|+|.|...|-||.-.|+|.++.|++|.+..
T Consensus 65 Aivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 65 AIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp EEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred eEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 79999999999999988999999999998864
No 388
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.66 E-value=0.046 Score=40.36 Aligned_cols=60 Identities=12% Similarity=0.190 Sum_probs=47.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE----------CCEEEEEecC-HHHHHHHHHhCCcEEC
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV----------RNYGFVHIDS-PDINKCIKELNGMMVD 103 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~----------~g~afV~f~~-~~a~~Ai~~l~g~~~~ 103 (346)
+-+|.|+.||+.+||+++.+.++..=.+...... -.-|||.|.+ ++...-.+.++|..+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 4679999999999999998888776554332222 2468999999 9999999999999873
No 389
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.025 Score=44.32 Aligned_cols=36 Identities=8% Similarity=0.067 Sum_probs=29.0
Q ss_pred CeEEEecC----HHH----HHHHHH--HhCCCeeCCeeeEEeecCC
Q psy16419 1 MSSGHMEN----DEE----GRTAIK--ELNGQIVNEKPLKIEAATS 36 (346)
Q Consensus 1 ~aFV~F~~----~e~----A~~Al~--~lng~~l~g~~i~v~~~~~ 36 (346)
+|||+|.+ +++ |.+|+. .|||..|.|++|.|.....
T Consensus 50 fgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 50 VYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKH 95 (136)
T ss_dssp EEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCT
T ss_pred EEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECcc
Confidence 48999996 333 889988 7899999999999987653
No 390
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.82 E-value=0.063 Score=39.98 Aligned_cols=50 Identities=10% Similarity=0.207 Sum_probs=42.5
Q ss_pred eEEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCCCCCCCCCCcEEEEcCCCCCCC
Q psy16419 2 SSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTR 57 (346)
Q Consensus 2 aFV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~~~~~~~~~~~lfV~nLp~~~~ 57 (346)
|+|+|.+.+.|++.|+ ...+.|++.+|.|.+..++. ..+|++.+|++.++
T Consensus 50 AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~~~~-----~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 50 GVLTFREPADAERVLA-QADHELHGAQLSLRPAPPRA-----PARLLLQGLPPGTS 99 (104)
T ss_dssp EEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECCCCC-----CCCCCCCSCCCCCC
T ss_pred EEEEEcChHHHHHHhc-CCcceecCeEEEEEcCCCCC-----cceEeeecCCCCCC
Confidence 7999999999999987 45788999999998876643 57899999998875
No 391
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.75 E-value=0.028 Score=53.65 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=39.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE---CCEEEEEecC-HHHHHHHH
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDS-PDINKCIK 95 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~---~g~afV~f~~-~~a~~Ai~ 95 (346)
.+.|||. .|..+++.+|.++|++||+|.++.+- .-|+.|+|.+ +++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 4689997 79999999999999999999998777 3499999999 88876654
No 392
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=93.67 E-value=0.11 Score=31.71 Aligned_cols=27 Identities=33% Similarity=0.687 Sum_probs=22.1
Q ss_pred CCccCccccccCCCCCCCCCCCCCCCC
Q psy16419 119 LSCLNVIFFIRCGRGGHWSKECPRAGN 145 (346)
Q Consensus 119 ~~~~~~~~~~~~~~~g~~~~~~~~~~~ 145 (346)
++......||.|+..|||+++||....
T Consensus 5 ~~~~~~~~C~~Cgk~GH~ardCP~~~~ 31 (40)
T 1a6b_B 5 RSQLDRDQCAYCKEKGHWAKDCPKKPR 31 (40)
T ss_dssp CCSCCSSSCSSSCCTTCCTTSCSSSCC
T ss_pred cCCCCCCeeeECCCCCcchhhCcCCcc
Confidence 344557899999999999999997544
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.33 E-value=0.1 Score=40.65 Aligned_cols=69 Identities=16% Similarity=0.267 Sum_probs=53.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeEEE-EE---------------------ECCEEEEEecC-HHHHHHHHHhCCc
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVEC-DI---------------------VRNYGFVHIDS-PDINKCIKELNGM 100 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~-~i---------------------~~g~afV~f~~-~~a~~Ai~~l~g~ 100 (346)
.+-|.|-+.|++... .+-+.|++||.|.+- .+ -...-.|+|++ .+|.+|+. .||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 456777788776554 566789999999762 11 13566999999 99999998 5999
Q ss_pred EECCEEEEEEEeec
Q psy16419 101 MVDGKPMKVVVAGF 114 (346)
Q Consensus 101 ~~~g~~l~v~~a~~ 114 (346)
.|+|..|-|.+..+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999888888765
No 394
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=92.51 E-value=0.17 Score=36.98 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=28.5
Q ss_pred ceEEEecCCCCCCHHHHHHHhhcccceEEEEEe
Q psy16419 308 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV 340 (346)
Q Consensus 308 ~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~ 340 (346)
++|-|++||++.||+++.+..+...++.-..-+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv 34 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFF 34 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEe
Confidence 479999999999999999999999877655544
No 395
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=92.45 E-value=0.073 Score=29.10 Aligned_cols=20 Identities=25% Similarity=0.733 Sum_probs=17.1
Q ss_pred cccccCCCCCCCCCCCCCCC
Q psy16419 125 IFFIRCGRGGHWSKECPRAG 144 (346)
Q Consensus 125 ~~~~~~~~~g~~~~~~~~~~ 144 (346)
..||+||..|||+++|+...
T Consensus 3 ~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC-
T ss_pred CeeEeCCCCCcccccCCCcc
Confidence 46899999999999999753
No 396
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=92.05 E-value=0.088 Score=44.97 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=20.6
Q ss_pred CCCHHHHHHHhhcccceEEEEEe
Q psy16419 318 GTSVELIRPLFEKYGKVVECDVV 340 (346)
Q Consensus 318 ~~tee~L~~~F~~~G~I~~v~i~ 340 (346)
+-.+++|++.|++||+|.+|.|+
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~ 162 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIY 162 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEE
T ss_pred HHHHHHHHHHHHccCCeEEEEEe
Confidence 34678999999999999999996
No 397
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=89.95 E-value=0.24 Score=32.52 Aligned_cols=25 Identities=32% Similarity=0.741 Sum_probs=20.6
Q ss_pred ccCccccccCCCCCCCCCCCCCCCC
Q psy16419 121 CLNVIFFIRCGRGGHWSKECPRAGN 145 (346)
Q Consensus 121 ~~~~~~~~~~~~~g~~~~~~~~~~~ 145 (346)
......||.|+..|||+++||....
T Consensus 20 ~~~~~~C~~Cge~GH~ardCp~~~~ 44 (56)
T 1u6p_A 20 QLDRDQCAYCKEKGHWAKDCPKKPR 44 (56)
T ss_dssp TCCTTBCSSSCCBSSCGGGCTTCCC
T ss_pred CCCCCcceeCCCCCcccccCcCCcc
Confidence 3445789999999999999998543
No 398
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=87.99 E-value=0.38 Score=35.48 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=21.8
Q ss_pred eEEEecCCCCCCHHHHHHHhhcccce
Q psy16419 309 KIFIGNVNPGTSVELIRPLFEKYGKV 334 (346)
Q Consensus 309 ~lfV~nLp~~~tee~L~~~F~~~G~I 334 (346)
.++| +.|.++.-.||.++|++||.|
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv 32 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI 32 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE
Confidence 4556 999999999999999999943
No 399
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=85.23 E-value=0.95 Score=33.26 Aligned_cols=26 Identities=12% Similarity=0.287 Sum_probs=22.3
Q ss_pred ceEEEecCCCCCCHHHHHHHhhcccce
Q psy16419 308 FKIFIGNVNPGTSVELIRPLFEKYGKV 334 (346)
Q Consensus 308 ~~lfV~nLp~~~tee~L~~~F~~~G~I 334 (346)
..++| +.|.++.-.||.++|++||.|
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv 42 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI 42 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE
Confidence 34555 999999999999999999854
No 400
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=82.68 E-value=0.95 Score=33.69 Aligned_cols=34 Identities=18% Similarity=0.052 Sum_probs=31.1
Q ss_pred EEEecCHHHHHHHHHHhCCCeeCCeeeEEeecCC
Q psy16419 3 SGHMENDEEGRTAIKELNGQIVNEKPLKIEAATS 36 (346)
Q Consensus 3 FV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~~ 36 (346)
.|.|.++++|.+|...|++..+.|+.++|-.+.+
T Consensus 50 rv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 50 RINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp EEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred EEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 5899999999999999999999999999988763
No 401
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.10 E-value=0.62 Score=30.42 Aligned_cols=19 Identities=42% Similarity=0.978 Sum_probs=17.1
Q ss_pred ccccccCCCCCCCCCCCCC
Q psy16419 124 VIFFIRCGRGGHWSKECPR 142 (346)
Q Consensus 124 ~~~~~~~~~~g~~~~~~~~ 142 (346)
...||+||..|||.++|+.
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~ 25 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPT 25 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSG
T ss_pred CCccccCCCcCcccccCCC
Confidence 4579999999999999985
No 402
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=79.65 E-value=0.88 Score=43.37 Aligned_cols=37 Identities=11% Similarity=0.204 Sum_probs=29.0
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccceEEEEEeccee
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k~fg 344 (346)
.++|||. .|..+++.+|.++|++||+|.++-.-+++|
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g 89 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG 89 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC
Confidence 3579996 799999999999999999999998765543
No 403
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=79.53 E-value=2.8 Score=26.40 Aligned_cols=34 Identities=35% Similarity=0.766 Sum_probs=28.2
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy16419 124 VIFFIRCGRGGHWSKECPRAGNFRSSGCYCKSKSSHK 160 (346)
Q Consensus 124 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
...+|+++..||++++|+.. +...+|..+..+|.
T Consensus 6 ~~~C~~Cg~~GH~a~~C~~~---~~~~C~~Cg~~GH~ 39 (49)
T 2ec7_A 6 VIRCWNCGKEGHSARQCRAP---RRQGCWKCGKTGHV 39 (49)
T ss_dssp CCBCTTTCCBTCCTTTCCCS---SCCSCSSSCCSSCC
T ss_pred cCeeeecCCCCcChhhCcCC---CCCeeCcCCCcCCc
Confidence 46799999999999999875 23568888888887
No 404
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=79.21 E-value=3.7 Score=28.46 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=30.7
Q ss_pred ccCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy16419 121 CLNVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKSKSSHK 160 (346)
Q Consensus 121 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
......+|+|+..||++++|+... ....+|..+..+|.
T Consensus 21 ~~r~~~C~~Cg~~GH~a~~C~~~~--~~~~C~~Cg~~GH~ 58 (74)
T 2li8_A 21 RSKGDRCYNCGGLDHHAKECKLPP--QPKKCHFCQSISHM 58 (74)
T ss_dssp CSTTSCCTTTCCSSSCTTTCSSCC--CCCCCTTTCCTTSC
T ss_pred cCCCCcccccCCcCcCcccCCCCC--CCCccCCcCCcCCc
Confidence 345568999999999999998643 34678999999888
No 405
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=78.50 E-value=0.85 Score=33.53 Aligned_cols=27 Identities=15% Similarity=0.285 Sum_probs=22.8
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcccc
Q psy16419 307 TFKIFIGNVNPGTSVELIRPLFEKYGK 333 (346)
Q Consensus 307 ~~~lfV~nLp~~~tee~L~~~F~~~G~ 333 (346)
.-+|-|+.||++.||+++.+.++..=+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~ 35 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPA 35 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSS
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCc
Confidence 347999999999999999888877644
No 406
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=78.45 E-value=3.4 Score=39.89 Aligned_cols=53 Identities=11% Similarity=0.354 Sum_probs=43.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEE-CCEEEEEecC-HHHHHHHHHhC
Q psy16419 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-RNYGFVHIDS-PDINKCIKELN 98 (346)
Q Consensus 44 ~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~-~g~afV~f~~-~~a~~Ai~~l~ 98 (346)
...++|+ +|..+...+|.++|+.||.| +|..+ ...|||.|.+ +.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCCeEEEEECCHHHHHHHHHHHH
Confidence 3466665 99999999999999999965 44444 7899999999 99999999885
No 407
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=77.33 E-value=2.8 Score=24.92 Aligned_cols=32 Identities=28% Similarity=0.760 Sum_probs=25.6
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy16419 126 FFIRCGRGGHWSKECPRAGNFRSSGCYCKSKSSHK 160 (346)
Q Consensus 126 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
.+|+++..||++++|+.. +...++..+..+|.
T Consensus 2 ~C~~Cg~~GH~a~~C~~~---~~~~C~~Cg~~GH~ 33 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP---RQEGCWNCGSKEHR 33 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC---CCSSCTTTCCSSSC
T ss_pred eeeccCCCCcccccCCCC---CCCccccCCCCCCc
Confidence 478999999999999864 34577888888876
No 408
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=75.88 E-value=2.5 Score=29.12 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=45.5
Q ss_pred EEEEcCC-CCCCCHHHHHHhhcCCC-----CeEEEEEECCEEEEEecCHHHHHHHHHhCCcEECCEEEEEEEee
Q psy16419 46 KVFVGNL-SDNTRAPEVRELFVPYG-----TVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVVVAG 113 (346)
Q Consensus 46 ~lfV~nL-p~~~~e~~L~~~F~~~G-----~v~~~~i~~g~afV~f~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 113 (346)
++||..= -..++..+|-.++..-+ .|-.+.|...|.||+-..+.+..++..|++..+.|+.+.|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s~v~v~~~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNGKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSSCEEEEECTTCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCCcEEEEECHHHHHHHHHHhccccCcCceEEEEECC
Confidence 4555211 23556667766665443 36677787899999999988999999999999999999988754
No 409
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.35 E-value=5.6 Score=26.46 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=28.7
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy16419 124 VIFFIRCGRGGHWSKECPRAGNFRSSGCYCKSKSSHK 160 (346)
Q Consensus 124 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
...+|+|+..||++++|+... +...+|..+..+|.
T Consensus 7 ~~~C~~Cg~~GH~a~~C~~~~--~~~~C~~Cg~~GH~ 41 (63)
T 2cqf_A 7 GDRCYNCGGLDHHAKECKLPP--QPKKCHFCQSISHM 41 (63)
T ss_dssp CCCCSSSCCSSSCTTTCCSCC--CSSCCTTTCCSSSC
T ss_pred CCcccccCCCCcChhhCCCCC--CCCccCCcCCcCCc
Confidence 457999999999999998643 34678888888887
No 410
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=74.13 E-value=1.4 Score=29.08 Aligned_cols=35 Identities=23% Similarity=0.509 Sum_probs=8.1
Q ss_pred ccccCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCc
Q psy16419 126 FFIRCGRGGHWSKECPRAGNF-----RSSGCYCKSKSSHK 160 (346)
Q Consensus 126 ~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 160 (346)
.+|+++..||++++|+..... +...+|..+..+|.
T Consensus 3 ~Cf~Cg~~GH~a~~C~~~~~~~~~~~~~~~C~~Cg~~GH~ 42 (60)
T 1cl4_A 3 SCFKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGKHW 42 (60)
T ss_dssp --------------------------CCCSCSSCSSCSSC
T ss_pred ccccCCCCCcCHhhCcCCCCCccccCCCcceeECCCCCCc
Confidence 467777777777777654321 23456666666665
No 411
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=73.99 E-value=3.6 Score=31.90 Aligned_cols=32 Identities=22% Similarity=0.171 Sum_probs=28.1
Q ss_pred EEEecCHHHHHHHHHHhCCCeeCCeeeEEeecC
Q psy16419 3 SGHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 35 (346)
Q Consensus 3 FV~F~~~e~A~~Al~~lng~~l~g~~i~v~~~~ 35 (346)
.|.|++..+|++||. .||..+.|.-|-|.+..
T Consensus 66 kItYds~~~A~rAL~-~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 66 KITYDNPASAVDALL-ENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp EEEBSSHHHHHHHHT-TTTCEETTEECEEEECC
T ss_pred EEEcCCHHHHHHHHH-hCCeEeCcEEEEEEECC
Confidence 589999999999998 79999999877777664
No 412
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=73.96 E-value=2.5 Score=27.97 Aligned_cols=37 Identities=22% Similarity=0.511 Sum_probs=28.1
Q ss_pred ccccccCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCc
Q psy16419 124 VIFFIRCGRGGHWSKECPRAGNF--RSSGCYCKSKSSHK 160 (346)
Q Consensus 124 ~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~ 160 (346)
...+|+|+..||++++|+..... ....+|..+..+|.
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~~~~~~~~~~C~~Cg~~GH~ 42 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNGMGHN 42 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTTTSSSCCCSBCTTTCCBSSC
T ss_pred CCcccccCCCCeehhhCcCCcCCCCCCCeeCCCCCCCCC
Confidence 45789999999999999875432 23568888888887
No 413
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=70.49 E-value=2.6 Score=27.21 Aligned_cols=36 Identities=31% Similarity=0.726 Sum_probs=28.7
Q ss_pred cCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy16419 122 LNVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKSKSSHK 160 (346)
Q Consensus 122 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
.....+|+++..||++++|+.. +...+|..+..+|.
T Consensus 10 ~~~~~C~~Cg~~GH~a~~C~~~---~~~~C~~Cg~~GH~ 45 (55)
T 1a1t_A 10 RKTVKCFNCGKEGHIAKNCRAP---RKKGCWKCGKEGHQ 45 (55)
T ss_dssp GGTCBCTTTCCBSSCGGGCSSC---SCCBCTTTCCBSSC
T ss_pred CCCcceeeeCCCCcChhhcCCC---CCCEeCCCCCcCCc
Confidence 3446799999999999999874 33568888888887
No 414
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=68.96 E-value=4.9 Score=23.48 Aligned_cols=30 Identities=27% Similarity=0.610 Sum_probs=24.4
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy16419 126 FFIRCGRGGHWSKECPRAGNFRSSGCYCKSKSSHK 160 (346)
Q Consensus 126 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
.+|+++..||++++|+.. ..++..+..+|.
T Consensus 2 ~C~~Cg~~GH~~~~C~~~-----~~C~~Cg~~GH~ 31 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP-----KVCFKCKQPGHF 31 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB-----TTCSSCCCTTGG
T ss_pred cccccCCCCcchhhCcCc-----CeEccCCCcCCc
Confidence 478999999999999864 467888887776
No 415
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=68.81 E-value=2.3 Score=23.55 Aligned_cols=20 Identities=35% Similarity=0.783 Sum_probs=17.2
Q ss_pred ccccccCCCCCCCCCCCCCC
Q psy16419 124 VIFFIRCGRGGHWSKECPRA 143 (346)
Q Consensus 124 ~~~~~~~~~~g~~~~~~~~~ 143 (346)
...||+|+..||++++|+..
T Consensus 6 ~~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSS
T ss_pred CCEEEECCccccCHhHCccc
Confidence 35799999999999999864
No 416
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=60.15 E-value=11 Score=28.66 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=26.6
Q ss_pred EEEecCHHHHHHHHHHhCCCeeCC-eeeEEeecC
Q psy16419 3 SGHMENDEEGRTAIKELNGQIVNE-KPLKIEAAT 35 (346)
Q Consensus 3 FV~F~~~e~A~~Al~~lng~~l~g-~~i~v~~~~ 35 (346)
.|.|++..+|++||. .||..+.| .-|-|.+..
T Consensus 63 hI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 63 HIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp EEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred EEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 589999999999998 79999985 667776643
No 417
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=49.32 E-value=6.1 Score=28.00 Aligned_cols=23 Identities=26% Similarity=0.749 Sum_probs=19.6
Q ss_pred ccccccCCCCCCCCCCCCCCCCC
Q psy16419 124 VIFFIRCGRGGHWSKECPRAGNF 146 (346)
Q Consensus 124 ~~~~~~~~~~g~~~~~~~~~~~~ 146 (346)
...+|+||..||++++|+..+..
T Consensus 46 ~~~CYnCG~~GH~~rdC~~~r~s 68 (83)
T 3nyb_B 46 TIYCYNCGGKGHFGDDCKEKRSS 68 (83)
T ss_dssp CCBCSSSSCBSSCGGGCSSCCSC
T ss_pred CCeecccCCCCcCcccCCccccC
Confidence 46899999999999999986543
No 418
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=37.85 E-value=27 Score=30.41 Aligned_cols=32 Identities=13% Similarity=0.254 Sum_probs=27.8
Q ss_pred ceEEEecCCCCCCHHHHHHHhhcccceEEEEEe
Q psy16419 308 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV 340 (346)
Q Consensus 308 ~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~ 340 (346)
..+.|+|||+.++..-|..++.. ..+.+..++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 46799999999999999999988 788877764
No 419
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=36.43 E-value=1.1e+02 Score=21.65 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=46.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEECCEEEEEecC-HHHHHHHHHh
Q psy16419 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKEL 97 (346)
Q Consensus 43 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~v~~~~i~~g~afV~f~~-~~a~~Ai~~l 97 (346)
..+-|-|-|+|..+-..++--.....|---.|+.+-|-|.|.|.+ ++-..|+..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyidgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecCeeEEEecCChHHHHHHHHH
Confidence 467788889999998888777777778777888889999999999 8888888766
No 420
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=34.41 E-value=17 Score=31.87 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=28.5
Q ss_pred ceEEEecCCCCCCHHHHHHHhhcccceEEEEEe
Q psy16419 308 FKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV 340 (346)
Q Consensus 308 ~~lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~ 340 (346)
..+.|+|||+.++..-|..++..-..+.++.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 357999999999999999999877778887774
No 421
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=29.07 E-value=21 Score=30.87 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=27.6
Q ss_pred EEEecCCCCCCHHHHHHHhhcccceEEEEEe
Q psy16419 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV 340 (346)
Q Consensus 310 lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~ 340 (346)
..|+|||+.++.+-|..++.....+.++.++
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 4899999999999999999988888888775
No 422
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=25.56 E-value=29 Score=26.32 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=24.1
Q ss_pred EEEecCCCCCCHHHHHHHhhcccceEEEEEecc
Q psy16419 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN 342 (346)
Q Consensus 310 lfV~nLp~~~tee~L~~~F~~~G~I~~v~i~k~ 342 (346)
|=|- -|..++.+.|++.| +||.+ ++++++|
T Consensus 60 vgVp-~pe~vD~e~v~a~l-PyG~~-~v~vv~G 89 (122)
T 3c8l_A 60 VAVP-YPEQVREEEVLAVL-PFGRK-TLTVESG 89 (122)
T ss_dssp EEES-SGGGCCHHHHHTTS-CSSEE-EEEEEEC
T ss_pred EeCC-ChhhcCHHHHHhhC-CCCce-EEEEEeC
Confidence 3443 48999999999999 89999 4888754
No 423
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=25.50 E-value=2.1e+02 Score=23.06 Aligned_cols=49 Identities=8% Similarity=0.162 Sum_probs=33.7
Q ss_pred EEEcCCCC---------CCCHHHHHHhh--cCCCCeEEEEEE-----CCEEEEEecC--HHHHHHHH
Q psy16419 47 VFVGNLSD---------NTRAPEVRELF--VPYGTVVECDIV-----RNYGFVHIDS--PDINKCIK 95 (346)
Q Consensus 47 lfV~nLp~---------~~~e~~L~~~F--~~~G~v~~~~i~-----~g~afV~f~~--~~a~~Ai~ 95 (346)
+.|-|+|. ..+..+|++.| +.|.++.-..+- .|++.|.|.. .--..|+.
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 44556665 24457899977 999987755444 6899999998 44455554
No 424
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=24.41 E-value=44 Score=30.39 Aligned_cols=22 Identities=23% Similarity=0.145 Sum_probs=19.6
Q ss_pred eEEEecCCCCCCHHHHHHHhhc
Q psy16419 309 KIFIGNVNPGTSVELIRPLFEK 330 (346)
Q Consensus 309 ~lfV~nLp~~~tee~L~~~F~~ 330 (346)
-..|+|||++++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4799999999999999988874
No 425
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=24.38 E-value=21 Score=25.46 Aligned_cols=15 Identities=33% Similarity=0.687 Sum_probs=11.6
Q ss_pred cccceEEEEEecceeeC
Q psy16419 330 KYGKVVECDVVKNYGFV 346 (346)
Q Consensus 330 ~~G~I~~v~i~k~fgFV 346 (346)
..|.|...+ ||||||
T Consensus 19 ~~G~Vk~f~--kGfGFI 33 (88)
T 2yty_A 19 LLGYVATLK--DNFGFI 33 (88)
T ss_dssp EEEEEEEEC--SSEEEE
T ss_pred eeEEEEEEE--CCccEE
Confidence 367888776 899986
No 426
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=22.81 E-value=23 Score=25.27 Aligned_cols=14 Identities=29% Similarity=0.605 Sum_probs=10.2
Q ss_pred ccceEEEEEecceeeC
Q psy16419 331 YGKVVECDVVKNYGFV 346 (346)
Q Consensus 331 ~G~I~~v~i~k~fgFV 346 (346)
.|.|...+ ||||||
T Consensus 20 ~G~Vkwf~--KGfGFI 33 (89)
T 1wfq_A 20 TGVIEKLL--TSYGFI 33 (89)
T ss_dssp EEEEEEEC--SSEEEE
T ss_pred ceEEEEEe--CCeeEE
Confidence 57777665 888886
No 427
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=22.39 E-value=34 Score=26.94 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=18.8
Q ss_pred ccccccCCCCCCCCCCCCCCCC
Q psy16419 124 VIFFIRCGRGGHWSKECPRAGN 145 (346)
Q Consensus 124 ~~~~~~~~~~g~~~~~~~~~~~ 145 (346)
...||+|+..||+.++||....
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~~~ 140 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLKAQ 140 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTTTC
T ss_pred CCcccccCCcCCEeccCcCCCC
Confidence 4689999999999999997533
No 428
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=21.50 E-value=49 Score=19.30 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=12.3
Q ss_pred CCCCHHHHHHHhhcc
Q psy16419 317 PGTSVELIRPLFEKY 331 (346)
Q Consensus 317 ~~~tee~L~~~F~~~ 331 (346)
-++|.++|+.+|..-
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 358899999999764
No 429
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.40 E-value=37 Score=22.74 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=15.3
Q ss_pred CCeEEEEEECCEEEEEecC
Q psy16419 69 GTVVECDIVRNYGFVHIDS 87 (346)
Q Consensus 69 G~v~~~~i~~g~afV~f~~ 87 (346)
|+|.+|...+..++|.|++
T Consensus 28 GtV~kV~~~~~~ClV~FeD 46 (68)
T 2e5p_A 28 GTIKKVDSAREVCLVQFED 46 (68)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred eEEEEEecCCcEEEEEEcc
Confidence 5677766668999999997
No 430
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=20.55 E-value=33 Score=25.00 Aligned_cols=12 Identities=50% Similarity=0.930 Sum_probs=8.1
Q ss_pred HHHHHHHhhccc
Q psy16419 321 VELIRPLFEKYG 332 (346)
Q Consensus 321 ee~L~~~F~~~G 332 (346)
-..|+++|++||
T Consensus 90 I~~ire~fqKYG 101 (101)
T 4aj5_1 90 IMKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHcC
Confidence 356788888887
Done!