Your job contains 1 sequence.
>psy16419
MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPE
VRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVVVAGFISSILS
CLNVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKSKSSHKIYQDALVLWEDQDLWTGLVK
GTSDLVVVIASPIHQAHCDSFLCCSRRFGAVGGPGPLDRFGYPREAYPRDPYPPPPPPSF
LRDRMMGGYPMKFGLILIPRSQIESLDLCGHFKQTKTTIVWSPRYQSFGTVVVIEARNMP
GFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV
The BLAST search returned 14 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy16419
(346 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0011640 - symbol:lark "lark" species:7227 "Drosoph... 444 6.6e-42 1
UNIPROTKB|E9PLB0 - symbol:RBM4B "RNA-binding protein 4B" ... 144 4.8e-19 2
UNIPROTKB|E9PM61 - symbol:RBM4B "RNA-binding protein 4B" ... 142 4.8e-19 2
RGD|1306891 - symbol:Rbm4 "RNA binding motif protein 4" s... 142 4.8e-19 2
UNIPROTKB|D6R9K7 - symbol:RBM4 "RNA-binding protein 4" sp... 140 6.1e-19 2
UNIPROTKB|J3QRR5 - symbol:RBM4 "RNA-binding protein 4" sp... 140 6.1e-19 2
ZFIN|ZDB-GENE-030131-3902 - symbol:rbm4.1 "RNA binding mo... 216 5.0e-18 2
ZFIN|ZDB-GENE-040426-1811 - symbol:zgc:77262 "zgc:77262" ... 190 2.4e-16 2
UNIPROTKB|F8WDX3 - symbol:RBM14 "RNA-binding protein 14" ... 118 5.6e-16 2
ZFIN|ZDB-GENE-040426-2455 - symbol:rbm14b "RNA binding mo... 219 1.1e-15 1
UNIPROTKB|E9PB51 - symbol:RBM4 "RNA-binding protein 4" sp... 153 1.4e-15 2
ZFIN|ZDB-GENE-040426-1938 - symbol:rbm4.3 "RNA binding mo... 153 3.1e-15 2
UNIPROTKB|F2Z2W2 - symbol:RBM14-RBM4 "Protein RBM14-RBM4"... 111 3.3e-15 2
UNIPROTKB|Q2PYN1 - symbol:RBM14 "RNA-binding protein 14" ... 111 3.3e-15 2
MGI|MGI:1913954 - symbol:Rbm4b "RNA binding motif protein... 200 1.1e-14 2
RGD|1359343 - symbol:Rbm4b "RNA binding motif protein 4B"... 200 1.1e-14 2
UNIPROTKB|Q64LC9 - symbol:Rbm4b "RNA-binding protein 4B" ... 200 1.1e-14 2
UNIPROTKB|Q2KIV3 - symbol:RBM4B "Uncharacterized protein"... 201 1.2e-14 2
UNIPROTKB|E2RSD7 - symbol:RBM4B "Uncharacterized protein"... 200 1.2e-14 2
UNIPROTKB|Q9BQ04 - symbol:RBM4B "RNA-binding protein 4B" ... 200 1.2e-14 2
UNIPROTKB|Q06AT9 - symbol:RBM4B "RNA-binding protein 4B" ... 200 1.2e-14 2
UNIPROTKB|Q9BDY9 - symbol:RBM4 "RNA-binding protein 4" sp... 200 1.2e-14 2
UNIPROTKB|D4A1W5 - symbol:Rbm4 "Protein Rbm4" species:101... 201 1.2e-14 2
UNIPROTKB|Q3MHX3 - symbol:RBM4 "RNA-binding protein 4" sp... 201 1.5e-14 2
UNIPROTKB|Q9BWF3 - symbol:RBM4 "RNA-binding protein 4" sp... 201 1.6e-14 2
UNIPROTKB|Q4R979 - symbol:RBM4 "RNA-binding protein 4" sp... 201 1.6e-14 2
UNIPROTKB|E2RS70 - symbol:RBM4 "Uncharacterized protein" ... 201 1.6e-14 2
UNIPROTKB|H9L1A3 - symbol:LOC100859076 "Uncharacterized p... 201 2.0e-14 2
UNIPROTKB|B8ZZ74 - symbol:RBM14 "RNA-binding protein 14" ... 111 1.9e-13 2
ZFIN|ZDB-GENE-030131-3019 - symbol:rbm4.2 "RNA binding mo... 189 1.9e-12 1
UNIPROTKB|E2RS43 - symbol:RBM14 "Uncharacterized protein"... 161 6.4e-12 2
UNIPROTKB|Q96PK6 - symbol:RBM14 "RNA-binding protein 14" ... 161 6.4e-12 2
UNIPROTKB|F1MI47 - symbol:RBM14 "RNA-binding protein 14" ... 160 6.4e-12 2
UNIPROTKB|Q5EA36 - symbol:RBM14 "RNA-binding protein 14" ... 160 6.4e-12 2
MGI|MGI:1929092 - symbol:Rbm14 "RNA binding motif protein... 160 6.4e-12 2
ZFIN|ZDB-GENE-050522-496 - symbol:rbm14a "RNA binding mot... 185 9.4e-12 1
WB|WBGene00004384 - symbol:rnp-1 species:6239 "Caenorhabd... 175 3.9e-11 1
UNIPROTKB|E9PTC9 - symbol:Rbm4 "Protein Rbm4" species:101... 139 4.0e-11 2
UNIPROTKB|F1RUT8 - symbol:RBM4B "RNA-binding protein 4B" ... 165 4.9e-11 2
UNIPROTKB|E9PTZ4 - symbol:Rbm4 "Protein Rbm4" species:101... 139 5.0e-11 2
UNIPROTKB|B0LM41 - symbol:RBM14/RBM4 fusion "Transcriptio... 111 9.3e-11 2
UNIPROTKB|D4A1U6 - symbol:Rbm4 "Protein Rbm4" species:101... 119 1.8e-10 2
UNIPROTKB|F1RUT1 - symbol:RBM4 "Uncharacterized protein" ... 138 8.2e-10 2
FB|FBgn0039730 - symbol:CG7903 species:7227 "Drosophila m... 146 1.8e-07 1
DICTYBASE|DDB_G0280393 - symbol:DDB_G0280393 "CCHC-type z... 141 7.6e-07 1
UNIPROTKB|J9PA38 - symbol:SRSF6 "Uncharacterized protein"... 117 1.5e-06 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 124 2.0e-06 2
UNIPROTKB|D6RF44 - symbol:HNRNPD "Heterogeneous nuclear r... 80 6.1e-06 2
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 134 9.5e-06 1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 109 1.1e-05 1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 111 1.2e-05 2
DICTYBASE|DDB_G0290745 - symbol:pabpc1B "putative polyade... 124 1.4e-05 2
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 119 2.4e-05 2
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 120 2.4e-05 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 118 3.3e-05 2
TAIR|locus:2049766 - symbol:RS2Z33 "arginine/serine-rich ... 123 4.1e-05 1
ZFIN|ZDB-GENE-030131-591 - symbol:srsf4 "serine/arginine-... 120 4.2e-05 2
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 128 4.5e-05 1
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 100 6.1e-05 2
TAIR|locus:2083936 - symbol:RS2Z32 "arginine/serine-rich ... 121 6.5e-05 1
UNIPROTKB|H0YEQ8 - symbol:PABPC4 "Polyadenylate-binding p... 102 6.5e-05 1
TAIR|locus:2014340 - symbol:UBP1A "oligouridylate-binding... 124 6.7e-05 1
UNIPROTKB|D6RAF8 - symbol:HNRNPD "Heterogeneous nuclear r... 96 8.1e-05 2
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 99 8.1e-05 2
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 107 8.4e-05 2
UNIPROTKB|J3KTC1 - symbol:MSI2 "RNA-binding protein Musas... 80 8.9e-05 2
FB|FBgn0004227 - symbol:nonA "no on or off transient A" s... 127 9.2e-05 2
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 99 9.3e-05 2
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 99 9.3e-05 2
UNIPROTKB|F1NLH0 - symbol:ELAVL4 "Uncharacterized protein... 99 9.7e-05 2
RGD|1560027 - symbol:Elavl4 "ELAV (embryonic lethal, abno... 99 9.8e-05 2
UNIPROTKB|O09032 - symbol:Elavl4 "ELAV-like protein 4" sp... 99 9.8e-05 2
ZFIN|ZDB-GENE-990415-246 - symbol:elavl4 "ELAV (embryonic... 100 9.9e-05 2
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 121 0.00010 2
UNIPROTKB|F1LRX3 - symbol:Elavl4 "ELAV-like protein 4" sp... 99 0.00010 2
UNIPROTKB|F1P856 - symbol:ELAVL4 "Uncharacterized protein... 99 0.00011 2
UNIPROTKB|F1LRL1 - symbol:Elavl4 "ELAV-like protein 4" sp... 99 0.00011 2
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 124 0.00011 1
MGI|MGI:107427 - symbol:Elavl4 "ELAV (embryonic lethal, a... 99 0.00011 2
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 120 0.00012 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 124 0.00012 1
DICTYBASE|DDB_G0284167 - symbol:DDB_G0284167 "RNA-binding... 119 0.00012 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 118 0.00012 2
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 124 0.00013 1
UNIPROTKB|B1APY9 - symbol:ELAVL4 "cDNA FLJ50619, highly s... 98 0.00013 2
UNIPROTKB|P26378 - symbol:ELAVL4 "ELAV-like protein 4" sp... 98 0.00014 2
UNIPROTKB|Q5ZLF9 - symbol:SRSF5 "Uncharacterized protein"... 99 0.00014 1
UNIPROTKB|B4DJK0 - symbol:SRSF5 "Serine/arginine-rich-spl... 99 0.00014 1
UNIPROTKB|G3V5K8 - symbol:SRSF5 "Serine/arginine-rich-spl... 99 0.00014 1
UNIPROTKB|B1APY8 - symbol:ELAVL4 "ELAV-like protein 4" sp... 98 0.00014 2
ZFIN|ZDB-GENE-070424-97 - symbol:hnrnpd "heterogeneous nu... 91 0.00014 2
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 123 0.00016 1
UNIPROTKB|H0Y8G5 - symbol:HNRNPD "Heterogeneous nuclear r... 96 0.00016 2
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 115 0.00017 1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 118 0.00017 2
UNIPROTKB|E7ETJ9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 98 0.00018 1
FB|FBgn0010263 - symbol:Rbp9 "RNA-binding protein 9" spec... 113 0.00019 2
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 121 0.00020 2
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 122 0.00020 1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 93 0.00021 2
WARNING: Descriptions of 51 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0011640 [details] [associations]
symbol:lark "lark" species:7227 "Drosophila melanogaster"
[GO:0009790 "embryo development" evidence=IMP] [GO:0008062
"eclosion rhythm" evidence=NAS;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=NAS;IMP] [GO:0045804 "negative regulation of
eclosion" evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0045475 "locomotor rhythm" evidence=IMP;TAS]
[GO:0007562 "eclosion" evidence=TAS] [GO:0040011 "locomotion"
evidence=TAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0003723 "RNA binding" evidence=NAS] [GO:0007303
"cytoplasmic transport, nurse cell to oocyte" evidence=IMP]
[GO:0008104 "protein localization" evidence=IMP] [GO:0030036 "actin
cytoskeleton organization" evidence=IMP] [GO:0007067 "mitosis"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005737 GO:GO:0008104
EMBL:AE014296 GO:GO:0007067 GO:GO:0000166 GO:GO:0046872
GO:GO:0030036 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0009790 GO:GO:0007303 GO:GO:0045475 Gene3D:4.10.60.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0008062 EMBL:U59476
EMBL:AY061458 RefSeq:NP_523957.1 RefSeq:NP_729237.1
RefSeq:NP_729238.1 RefSeq:NP_729239.1 RefSeq:NP_729240.1
UniGene:Dm.7078 ProteinModelPortal:Q94901 SMR:Q94901
MINT:MINT-786921 STRING:Q94901 PaxDb:Q94901 PRIDE:Q94901
EnsemblMetazoa:FBtr0076841 EnsemblMetazoa:FBtr0076842
EnsemblMetazoa:FBtr0076843 EnsemblMetazoa:FBtr0076844
EnsemblMetazoa:FBtr0076845 GeneID:38811 KEGG:dme:Dmel_CG8597
UCSC:CG8597-RA CTD:38811 FlyBase:FBgn0011640 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 InParanoid:Q94901 KO:K13187
OMA:GGHWSKE OrthoDB:EOG4DV42Z PhylomeDB:Q94901 GenomeRNAi:38811
NextBio:810485 Bgee:Q94901 GermOnline:CG8597 GO:GO:0045804
Uniprot:Q94901
Length = 352
Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
Identities = 91/164 (55%), Positives = 111/164 (67%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HME +++GR AI+ LNG +NE +K+EAA SR+ PNTPTTK+FVGNL+D TRAPEVREL
Sbjct: 46 HMETEQQGRDAIQNLNGYTLNEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVREL 105
Query: 65 FVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YGTVVECDIVRNYGFVH+D D+ IKELNG +VDG+P+KV V+ +
Sbjct: 106 FQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMG 165
Query: 123 NVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKSKSSHKIYQDAL 166
+ RCGR GHWSKECPR G S S Y+D +
Sbjct: 166 DPEQCYRCGRSGHWSKECPRLYGSAGGGREPPSPLSAGGYRDRM 209
Score = 179 (68.1 bits), Expect = 8.1e-22, Sum P(2) = 8.1e-22
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINK-CIKELN 98
P T K+F+GNL + T+A E+R LF YGTVVECD+V+NYGFVH+++ + I+ LN
Sbjct: 2 PGAGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLN 61
Query: 99 GMMVDGKPMKVVVA 112
G ++ +KV A
Sbjct: 62 GYTLNEFAIKVEAA 75
Score = 159 (61.0 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 32/48 (66%), Positives = 36/48 (75%)
Query: 299 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
MPG GTFK+FIGN++ T +R LFEKYG VVECDVVKNYGFV
Sbjct: 1 MPG---AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFV 45
Score = 136 (52.9 bits), Expect = 8.1e-22, Sum P(2) = 8.1e-22
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 292 VVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+ +EA + T KIF+GN+ T +R LF+KYG VVECD+V+NYGFV
Sbjct: 70 IKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFV 124
Score = 44 (20.5 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 16/51 (31%), Positives = 20/51 (39%)
Query: 204 CSRRFGAVGG----PGPLDRFGXXXXXXXXXXXXXXXXXS-FLRDRMMGGY 249
C R +G+ GG P PL G FLRDR+M G+
Sbjct: 183 CPRLYGSAGGGREPPSPLSAGGYRDRMYGRDPYPPPPPPPPFLRDRIMDGF 233
>UNIPROTKB|E9PLB0 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00979194
ProteinModelPortal:E9PLB0 SMR:E9PLB0 Ensembl:ENST00000531969
ArrayExpress:E9PLB0 Bgee:E9PLB0 Uniprot:E9PLB0
Length = 143
Score = 144 (55.7 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 33/102 (32%), Positives = 57/102 (55%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGK 105
F YG V+ECDIV++Y FVH++ + D + I+ L+ G+
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGR 139
Score = 138 (53.6 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VNINV 67
Score = 129 (50.5 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 116 (45.9 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>UNIPROTKB|E9PM61 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00977800
ProteinModelPortal:E9PM61 SMR:E9PM61 Ensembl:ENST00000524637
ArrayExpress:E9PM61 Bgee:E9PM61 Uniprot:E9PM61
Length = 147
Score = 142 (55.0 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 33/101 (32%), Positives = 56/101 (55%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
F YG V+ECDIV++Y FVH++ + D + I+ L+ G
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQG 138
Score = 138 (53.6 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VNINV 67
Score = 129 (50.5 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 116 (45.9 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>RGD|1306891 [details] [associations]
symbol:Rbm4 "RNA binding motif protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0002190 "cap-independent
translational initiation" evidence=ISO] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494
"cytoplasmic stress granule" evidence=ISO] [GO:0016607 "nuclear
speck" evidence=ISO] [GO:0017148 "negative regulation of
translation" evidence=ISO] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO] [GO:0033554
"cellular response to stress" evidence=ISO] [GO:0035198 "miRNA
binding" evidence=ISO] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=ISO]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISO] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISO] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISO] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISO] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISO] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1306891 RGD:1359343
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:CH473953 UniGene:Rn.203522 HOGENOM:HOG000089965 EMBL:BC086338
IPI:IPI00950131 SMR:Q5U212 STRING:Q5U212 Ensembl:ENSRNOT00000067093
InParanoid:Q5U212 Genevestigator:Q5U212 Uniprot:Q5U212
Length = 143
Score = 142 (55.0 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 33/101 (32%), Positives = 56/101 (55%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDG 104
F YG V+ECDIV++Y FVH++ + D + I+ L+ G
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQG 138
Score = 138 (53.6 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VNINV 67
Score = 129 (50.5 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 116 (45.9 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>UNIPROTKB|D6R9K7 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 HOGENOM:HOG000089965 IPI:IPI00965408
ProteinModelPortal:D6R9K7 SMR:D6R9K7 Ensembl:ENST00000506523
ArrayExpress:D6R9K7 Bgee:D6R9K7 Uniprot:D6R9K7
Length = 150
Score = 140 (54.3 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELN 98
F YG V+ECDIV++Y FVH++ + D + I+ L+
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132
Score = 138 (53.6 bits), Expect = 6.1e-19, Sum P(2) = 6.1e-19
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VNINV 67
Score = 129 (50.5 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 115 (45.5 bits), Expect = 6.1e-19, Sum P(2) = 6.1e-19
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>UNIPROTKB|J3QRR5 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 ProteinModelPortal:J3QRR5
Ensembl:ENST00000578778 Uniprot:J3QRR5
Length = 155
Score = 140 (54.3 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELN 98
F YG V+ECDIV++Y FVH++ + D + I+ L+
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132
Score = 138 (53.6 bits), Expect = 6.1e-19, Sum P(2) = 6.1e-19
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VNINV 67
Score = 129 (50.5 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 115 (45.5 bits), Expect = 6.1e-19, Sum P(2) = 6.1e-19
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>ZFIN|ZDB-GENE-030131-3902 [details] [associations]
symbol:rbm4.1 "RNA binding motif protein 4.1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-030131-3902 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
EMBL:BC046057 EMBL:BC071513 IPI:IPI00501593 RefSeq:NP_955999.1
UniGene:Dr.132298 ProteinModelPortal:Q6IQ97 SMR:Q6IQ97 PRIDE:Q6IQ97
Ensembl:ENSDART00000052862 GeneID:573001 KEGG:dre:573001 CTD:573001
HOGENOM:HOG000026790 HOVERGEN:HBG062217 InParanoid:Q6IQ97
OMA:PYEERDP OrthoDB:EOG4NP74W NextBio:20891027 ArrayExpress:Q6IQ97
Bgee:Q6IQ97 Uniprot:Q6IQ97
Length = 419
Score = 216 (81.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 52/147 (35%), Positives = 81/147 (55%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ E AI+ L+ ++N + +E + + P T +TK+ VGN+S + E+R
Sbjct: 41 HMDSKSEADEAIQNLHHYMLNGMAMNVEMSKGK--PKT-STKLHVGNISSSCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG VVECDIV++Y FVH++ D + I L+ GK M V ++ + +
Sbjct: 98 FEEYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAFQGKLMSVKLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP--RAGNFR 147
RCG+ GHWSKECP + G++R
Sbjct: 158 ERTGCYRCGQEGHWSKECPLDQNGSYR 184
Score = 177 (67.4 bits), Expect = 5.0e-18, Sum P(2) = 5.0e-18
Identities = 34/65 (52%), Positives = 47/65 (72%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDG 104
K+FVGNLS NT A E+R LF YG + ECDIV+N+GFVH+DS + ++ I+ L+ M++G
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62
Query: 105 KPMKV 109
M V
Sbjct: 63 MAMNV 67
Score = 142 (55.0 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 24/38 (63%), Positives = 32/38 (84%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GN++P T+ E IR LF +YGK+ ECD+VKN+GFV
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFV 40
Score = 106 (42.4 bits), Expect = 5.0e-18, Sum P(2) = 5.0e-18
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+ +GN++ + + +R FE+YG VVECD+VK+Y FV
Sbjct: 79 KLHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFV 116
>ZFIN|ZDB-GENE-040426-1811 [details] [associations]
symbol:zgc:77262 "zgc:77262" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1811 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P19339 HOVERGEN:HBG002295 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 EMBL:BX530031 EMBL:BC065633
IPI:IPI00497767 RefSeq:NP_991217.1 UniGene:Dr.6046
Ensembl:ENSDART00000065402 Ensembl:ENSDART00000145013 GeneID:402952
KEGG:dre:402952 InParanoid:Q6P0G2 OMA:HMAKERE NextBio:20816762
Uniprot:Q6P0G2
Length = 331
Score = 190 (71.9 bits), Expect = 8.4e-13, P = 8.4e-13
Identities = 42/106 (39%), Positives = 64/106 (60%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM+ +E + A+ L+ VN + +E AT+ K N TK++VGN+ + A +++EL
Sbjct: 41 HMDEEEAAQKAVSALHKHEVNGSRITVEYATT-KVRNA--TKIYVGNVPEGVAAAKIKEL 97
Query: 65 FVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 109
F P+G VVECDIV+NY FVH+ + I +LN VDG+ + V
Sbjct: 98 FQPFGKVVECDIVKNYAFVHMQRENEALDAIAKLNHSKVDGQKIFV 143
Score = 143 (55.4 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 29/68 (42%), Positives = 42/68 (61%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDI-NKCIKELNGMMVDG 104
K+FVGN++ T E+R LF YG V +CDI++NYGFVH+D + K + L+ V+G
Sbjct: 3 KIFVGNVASATTEDELRALFEKYGAVSDCDILKNYGFVHMDEEEAAQKAVSALHKHEVNG 62
Query: 105 KPMKVVVA 112
+ V A
Sbjct: 63 SRITVEYA 70
Score = 129 (50.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/38 (60%), Positives = 30/38 (78%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIF+GNV T+ + +R LFEKYG V +CD++KNYGFV
Sbjct: 3 KIFVGNVASATTEDELRALFEKYGAVSDCDILKNYGFV 40
Score = 125 (49.1 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KI++GNV G + I+ LF+ +GKVVECD+VKNY FV
Sbjct: 79 KIYVGNVPEGVAAAKIKELFQPFGKVVECDIVKNYAFV 116
>UNIPROTKB|F8WDX3 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:14219 ChiTaRS:RBM14 IPI:IPI00916896
ProteinModelPortal:F8WDX3 SMR:F8WDX3 Ensembl:ENST00000443702
ArrayExpress:F8WDX3 Bgee:F8WDX3 Uniprot:F8WDX3
Length = 129
Score = 118 (46.6 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK Y
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKGY 114
Score = 110 (43.8 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 5 HMENDEEGRTAIKELNGQIVNE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G + + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNY 80
LF G V+ECD+V+ Y
Sbjct: 98 LFERRGRVIECDVVKGY 114
Score = 108 (43.1 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNG 99
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHG 57
>ZFIN|ZDB-GENE-040426-2455 [details] [associations]
symbol:rbm14b "RNA binding motif protein 14b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-2455 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF57756 HSSP:P19339
KO:K13189 HOVERGEN:HBG062132 EMBL:BC056604 EMBL:BC068361
IPI:IPI00492284 RefSeq:NP_997973.1 UniGene:Dr.132507 GeneID:402858
KEGG:dre:402858 CTD:402858 InParanoid:Q6NV05 NextBio:20816684
Uniprot:Q6NV05
Length = 556
Score = 219 (82.2 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 51/141 (36%), Positives = 81/141 (57%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H++ + AI+ELNG+ + L +E + R P +TKVFVGNLS +++EL
Sbjct: 46 HLQGEGAAERAIRELNGREFKGRNLVVEESRGR--P-LHSTKVFVGNLSSMCTTEDLQEL 102
Query: 65 FVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVAGFISSILSCLN 123
F +G V+ECD V+ Y FVH+++ D + I+ L+G G+P+ V ++ S +
Sbjct: 103 FQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQTPTG 162
Query: 124 VIFFIRCGRGGHWSKECPRAG 144
I + CG+ GH++ ECP AG
Sbjct: 163 KIPCVSCGKQGHYAGECP-AG 182
Score = 129 (50.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDI-NKCIKELNGMMV 102
T K+FVGNL+ +T E+ +F YG VV C ++R + FVH+ + I+ELNG
Sbjct: 6 TVKLFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF 65
Query: 103 DGKPMKV 109
G+ + V
Sbjct: 66 KGRNLVV 72
Score = 112 (44.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 291 VVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
+VV E+R P S+ K+F+GN++ + E ++ LF+ +GKV+ECD VK Y FV
Sbjct: 70 LVVEESRGRPLHST----KVFVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFV 121
>UNIPROTKB|E9PB51 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 IPI:IPI00974578
ProteinModelPortal:E9PB51 SMR:E9PB51 Ensembl:ENST00000510173
ArrayExpress:E9PB51 Bgee:E9PB51 Uniprot:E9PB51
Length = 240
Score = 153 (58.9 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 36/106 (33%), Positives = 59/106 (55%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKV 109
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
Score = 138 (53.6 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VNINV 67
Score = 129 (50.5 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 115 (45.5 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>ZFIN|ZDB-GENE-040426-1938 [details] [associations]
symbol:rbm4.3 "RNA binding motif protein 4.3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016772
"transferase activity, transferring phosphorus-containing groups"
evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1938
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 EMBL:AL928799 EMBL:BC067153 IPI:IPI00493442
RefSeq:NP_998482.1 UniGene:Dr.5277 SMR:Q6NXC1 STRING:Q6NXC1
Ensembl:ENSDART00000037817 Ensembl:ENSDART00000135207 GeneID:406277
KEGG:dre:406277 CTD:406277 InParanoid:Q6NXC1 OMA:RPYDAER
OrthoDB:EOG4J9N12 NextBio:20817910 Uniprot:Q6NXC1
Length = 341
Score = 153 (58.9 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 37/109 (33%), Positives = 60/109 (55%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ + AIK L+ ++ P+ +EA+ +G N K+ V N+ T E+R L
Sbjct: 41 HMDDRKSATKAIKNLHLYKLHGTPINVEAS---RGKNQGPVKLHVANVEKGTD-DELRAL 96
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
F YGTV EC I++N+ FVH+++ D IK L+ GK + V ++
Sbjct: 97 FEDYGTVAECAIIKNFAFVHMNNSDEAMDAIKGLDNTEFQGKRIHVQIS 145
Score = 142 (55.0 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 27/65 (41%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
K+F+GNL E++ LF YGTV EC I++N+ FVH+D K IK L+ + G
Sbjct: 3 KIFIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSATKAIKNLHLYKLHG 62
Query: 105 KPMKV 109
P+ V
Sbjct: 63 TPINV 67
Score = 116 (45.9 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ GT + +EA G + G K+ + NV GT EL R LFE YG V EC ++KN+
Sbjct: 58 YKLHGTPINVEASR--G-KNQGPVKLHVANVEKGTDDEL-RALFEDYGTVAECAIIKNFA 113
Query: 345 FV 346
FV
Sbjct: 114 FV 115
>UNIPROTKB|F2Z2W2 [details] [associations]
symbol:RBM14-RBM4 "Protein RBM14-RBM4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
ChiTaRS:RBM14-RBM4 HGNC:HGNC:38840 IPI:IPI00916274
ProteinModelPortal:F2Z2W2 SMR:F2Z2W2 Ensembl:ENST00000421355
ArrayExpress:F2Z2W2 Bgee:F2Z2W2 Uniprot:F2Z2W2
Length = 147
Score = 111 (44.1 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 341
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112
Score = 108 (43.1 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNG 99
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHG 57
Score = 103 (41.3 bits), Expect = 0.00036, P = 0.00036
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 5 HMENDEEGRTAIKELNGQIVNE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G + + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVR 78
LF G V+ECD+V+
Sbjct: 98 LFERRGRVIECDVVK 112
>UNIPROTKB|Q2PYN1 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HOVERGEN:HBG002295 CTD:10432 KO:K13189 UniGene:Hs.533712
DNASU:10432 GeneID:10432 KEGG:hsa:10432 HGNC:HGNC:14219
ChiTaRS:RBM14 GenomeRNAi:10432 NextBio:39542 HOGENOM:HOG000089965
EMBL:DQ294957 IPI:IPI00969146 RefSeq:NP_001185766.1 SMR:Q2PYN1
STRING:Q2PYN1 Ensembl:ENST00000409738 UCSC:uc009yrh.3
Uniprot:Q2PYN1
Length = 119
Score = 111 (44.1 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 341
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112
Score = 108 (43.1 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNG 99
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHG 57
Score = 103 (41.3 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 5 HMENDEEGRTAIKELNGQIVNE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G + + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVR 78
LF G V+ECD+V+
Sbjct: 98 LFERRGRVIECDVVK 112
>MGI|MGI:1913954 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IDA] [GO:0032922 "circadian regulation of gene
expression" evidence=IDA] [GO:0043153 "entrainment of circadian
clock by photoperiod" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 MGI:MGI:1913954
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:BC019488 IPI:IPI00177224
RefSeq:NP_079993.2 UniGene:Mm.396734 ProteinModelPortal:Q8VE92
SMR:Q8VE92 PhosphoSite:Q8VE92 PaxDb:Q8VE92 PRIDE:Q8VE92
Ensembl:ENSMUST00000036744 GeneID:66704 KEGG:mmu:66704
UCSC:uc008gar.1 InParanoid:Q8VE92 NextBio:322415 Bgee:Q8VE92
CleanEx:MM_RBM4B Genevestigator:Q8VE92
GermOnline:ENSMUSG00000033760 Uniprot:Q8VE92
Length = 357
Score = 200 (75.5 bits), Expect = 6.9e-14, P = 6.9e-14
Identities = 47/139 (33%), Positives = 76/139 (54%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 138 (53.6 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VNINV 67
Score = 129 (50.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 116 (45.9 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>RGD|1359343 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=ISO;ISS] [GO:0007623 "circadian rhythm"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO;ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1359343
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747
RefSeq:NP_001007015.2 UniGene:Rn.203522 ProteinModelPortal:Q64LC9
SMR:Q64LC9 IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 200 (75.5 bits), Expect = 6.9e-14, P = 6.9e-14
Identities = 47/139 (33%), Positives = 76/139 (54%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 138 (53.6 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VNINV 67
Score = 129 (50.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 116 (45.9 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>UNIPROTKB|Q64LC9 [details] [associations]
symbol:Rbm4b "RNA-binding protein 4B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1359343 GO:GO:0006417 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0032922
GO:GO:0010628 Gene3D:4.10.60.10 GO:GO:0043153 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:83759 OMA:VYYNDAY
EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747 RefSeq:NP_001007015.2
UniGene:Rn.203522 ProteinModelPortal:Q64LC9 SMR:Q64LC9
IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 200 (75.5 bits), Expect = 6.9e-14, P = 6.9e-14
Identities = 47/139 (33%), Positives = 76/139 (54%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 138 (53.6 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VNINV 67
Score = 129 (50.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 116 (45.9 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>UNIPROTKB|Q2KIV3 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:DAAA02063594 EMBL:BC112497
IPI:IPI00711574 RefSeq:NP_001039393.1 UniGene:Bt.88781 SMR:Q2KIV3
Ensembl:ENSBTAT00000007153 GeneID:505756 KEGG:bta:505756
InParanoid:Q2KIV3 NextBio:20867298 Uniprot:Q2KIV3
Length = 359
Score = 201 (75.8 bits), Expect = 5.3e-14, P = 5.3e-14
Identities = 49/144 (34%), Positives = 79/144 (54%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP--RAG 144
+ RCG+ GHWSKECP R+G
Sbjct: 158 DQSGCYRCGKEGHWSKECPVDRSG 181
Score = 138 (53.6 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VNINV 67
Score = 129 (50.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 116 (45.9 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>UNIPROTKB|E2RSD7 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=IEA] [GO:0032922 "circadian regulation of
gene expression" evidence=IEA] [GO:0010628 "positive regulation of
gene expression" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0032922 GO:GO:0010628
Gene3D:4.10.60.10 GO:GO:0043153 GeneTree:ENSGT00390000020883
KO:K13187 CTD:83759 OMA:VYYNDAY EMBL:AAEX03011624
RefSeq:XP_533216.1 ProteinModelPortal:E2RSD7
Ensembl:ENSCAFT00000019655 GeneID:476008 KEGG:cfa:476008
NextBio:20851739 Uniprot:E2RSD7
Length = 359
Score = 200 (75.5 bits), Expect = 7.0e-14, P = 7.0e-14
Identities = 47/139 (33%), Positives = 76/139 (54%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 138 (53.6 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VNINV 67
Score = 129 (50.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 116 (45.9 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>UNIPROTKB|Q9BQ04 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0007623 "circadian rhythm" evidence=ISS]
[GO:0032922 "circadian regulation of gene expression" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 EMBL:CH471076 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W EMBL:AK095158 EMBL:BC003503
EMBL:BC004951 IPI:IPI00027838 RefSeq:NP_113680.1 UniGene:Hs.618713
PDB:2DGT PDBsum:2DGT ProteinModelPortal:Q9BQ04 SMR:Q9BQ04
IntAct:Q9BQ04 MINT:MINT-1379498 STRING:Q9BQ04 PhosphoSite:Q9BQ04
DMDM:62511129 SWISS-2DPAGE:Q9BQ04 PaxDb:Q9BQ04 PeptideAtlas:Q9BQ04
PRIDE:Q9BQ04 DNASU:83759 Ensembl:ENST00000310046
Ensembl:ENST00000525754 GeneID:83759 KEGG:hsa:83759 UCSC:uc001oja.3
CTD:83759 GeneCards:GC11M066432 HGNC:HGNC:28842 neXtProt:NX_Q9BQ04
PharmGKB:PA134977404 InParanoid:Q9BQ04 OMA:VYYNDAY PhylomeDB:Q9BQ04
ChiTaRS:RBM4B EvolutionaryTrace:Q9BQ04 GenomeRNAi:83759
NextBio:72795 ArrayExpress:Q9BQ04 Bgee:Q9BQ04 CleanEx:HS_RBM4B
Genevestigator:Q9BQ04 GermOnline:ENSG00000173914 Uniprot:Q9BQ04
Length = 359
Score = 200 (75.5 bits), Expect = 7.0e-14, P = 7.0e-14
Identities = 47/139 (33%), Positives = 76/139 (54%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 138 (53.6 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VNINV 67
Score = 129 (50.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 116 (45.9 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>UNIPROTKB|Q06AT9 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0007623 "circadian rhythm" evidence=ISS] [GO:0006417
"regulation of translation" evidence=ISS] [GO:0043153 "entrainment
of circadian clock by photoperiod" evidence=ISS] [GO:0032922
"circadian regulation of gene expression" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 Gene3D:4.10.60.10 GO:GO:0043153
eggNOG:NOG294108 KO:K13187 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 EMBL:DQ917636 RefSeq:NP_001116660.1 UniGene:Ssc.53769
ProteinModelPortal:Q06AT9 SMR:Q06AT9 GeneID:100144418
KEGG:ssc:100144418 Uniprot:Q06AT9
Length = 359
Score = 200 (75.5 bits), Expect = 7.0e-14, P = 7.0e-14
Identities = 47/139 (33%), Positives = 76/139 (54%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 138 (53.6 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VNINV 67
Score = 129 (50.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 116 (45.9 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>UNIPROTKB|Q9BDY9 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9986
"Oryctolagus cuniculus" [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=ISS] [GO:0002190
"cap-independent translational initiation" evidence=ISS]
[GO:0002192 "IRES-dependent translational initiation" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0017148
"negative regulation of translation" evidence=ISS] [GO:0032055
"negative regulation of translation in response to stress"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS] [GO:0035278
"negative regulation of translation involved in gene silencing by
miRNA" evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0045947 "negative regulation of translational
initiation" evidence=ISS] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=ISS] [GO:0051149 "positive
regulation of muscle cell differentiation" evidence=ISS]
[GO:0051403 "stress-activated MAPK cascade" evidence=ISS]
[GO:0097157 "pre-mRNA intronic binding" evidence=ISS] [GO:0097158
"pre-mRNA intronic pyrimidine-rich binding" evidence=ISS]
[GO:0097167 "circadian regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0030154 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0045947
GO:GO:0016607 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0046822 GO:GO:0051149 GO:GO:0003730 GO:GO:0032922
GO:GO:0010628 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 CTD:38811
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W OMA:VYYNDAY GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:AF233063
RefSeq:NP_001075548.1 UniGene:Ocu.2534 ProteinModelPortal:Q9BDY9
SMR:Q9BDY9 PRIDE:Q9BDY9 Ensembl:ENSOCUT00000006692 GeneID:100008755
Uniprot:Q9BDY9
Length = 359
Score = 200 (75.5 bits), Expect = 7.0e-14, P = 7.0e-14
Identities = 47/139 (33%), Positives = 76/139 (54%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DQSGCYRCGKEGHWSKECP 176
Score = 138 (53.6 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VNINV 67
Score = 129 (50.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 116 (45.9 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>UNIPROTKB|D4A1W5 [details] [associations]
symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1306891
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00371612
ProteinModelPortal:D4A1W5 Ensembl:ENSRNOT00000026611
ArrayExpress:D4A1W5 Uniprot:D4A1W5
Length = 361
Score = 201 (75.8 bits), Expect = 5.5e-14, P = 5.5e-14
Identities = 49/144 (34%), Positives = 79/144 (54%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP--RAG 144
+ RCG+ GHWSKECP R+G
Sbjct: 158 DQSGCYRCGKEGHWSKECPIDRSG 181
Score = 138 (53.6 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VNINV 67
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 116 (45.9 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>UNIPROTKB|Q3MHX3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9913 "Bos
taurus" [GO:0097167 "circadian regulation of translation"
evidence=ISS] [GO:0002192 "IRES-dependent translational initiation"
evidence=ISS] [GO:0002190 "cap-independent translational
initiation" evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0046822
"regulation of nucleocytoplasmic transport" evidence=ISS]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0051403 "stress-activated MAPK cascade"
evidence=ISS] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=ISS] [GO:0045947 "negative regulation of
translational initiation" evidence=ISS] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0032055 "negative regulation of translation in
response to stress" evidence=ISS] [GO:0017148 "negative regulation
of translation" evidence=ISS] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0030154 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0045947 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
EMBL:BT030489 EMBL:BC104570 IPI:IPI00689636 RefSeq:NP_001070478.1
UniGene:Bt.20177 ProteinModelPortal:Q3MHX3 SMR:Q3MHX3
Ensembl:ENSBTAT00000000541 GeneID:767937 KEGG:bta:767937 CTD:5936
InParanoid:Q3MHX3 OMA:IPTIDTC NextBio:20918294 GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 Uniprot:Q3MHX3
Length = 362
Score = 201 (75.8 bits), Expect = 5.5e-14, P = 5.5e-14
Identities = 49/144 (34%), Positives = 79/144 (54%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP--RAG 144
+ RCG+ GHWSKECP R+G
Sbjct: 158 DQSGCYRCGKEGHWSKECPVDRSG 181
Score = 138 (53.6 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VNINV 67
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 115 (45.5 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>UNIPROTKB|Q9BWF3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0032055
"negative regulation of translation in response to stress"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0033554 "cellular response to stress"
evidence=IDA] [GO:0051403 "stress-activated MAPK cascade"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0045947
"negative regulation of translational initiation" evidence=IDA]
[GO:0035198 "miRNA binding" evidence=IDA] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0002192 "IRES-dependent translational initiation" evidence=IDA]
[GO:0002190 "cap-independent translational initiation"
evidence=IDA] [GO:0097167 "circadian regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0006396 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 EMBL:AP001157
GO:GO:0000381 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:5936 OMA:IPTIDTC
GO:GO:0097158 GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:U89505
EMBL:AK097592 EMBL:AK303984 EMBL:AL832566 EMBL:BC000307
EMBL:BC021120 EMBL:BC032735 EMBL:BC064960 IPI:IPI00003704
IPI:IPI00556034 IPI:IPI00908491 IPI:IPI00940890
RefSeq:NP_001185772.1 RefSeq:NP_001185773.1 RefSeq:NP_002887.2
UniGene:Hs.523822 UniGene:Hs.728823 PDB:2DNQ PDBsum:2DNQ
ProteinModelPortal:Q9BWF3 SMR:Q9BWF3 DIP:DIP-44199N IntAct:Q9BWF3
MINT:MINT-1187795 STRING:Q9BWF3 PhosphoSite:Q9BWF3 DMDM:62511089
PaxDb:Q9BWF3 PRIDE:Q9BWF3 DNASU:5936 Ensembl:ENST00000310092
Ensembl:ENST00000396053 Ensembl:ENST00000398692
Ensembl:ENST00000408993 Ensembl:ENST00000409406
Ensembl:ENST00000483858 Ensembl:ENST00000530235
Ensembl:ENST00000532968 GeneID:5936 KEGG:hsa:5936 UCSC:uc001oiv.3
UCSC:uc001oiw.2 UCSC:uc001oix.2 GeneCards:GC11P066406
HGNC:HGNC:9901 MIM:602571 neXtProt:NX_Q9BWF3 PharmGKB:PA34266
ChiTaRS:RBM4 EvolutionaryTrace:Q9BWF3 GenomeRNAi:5936 NextBio:23140
ArrayExpress:Q9BWF3 Bgee:Q9BWF3 CleanEx:HS_RBM4
Genevestigator:Q9BWF3 GermOnline:ENSG00000173933 Uniprot:Q9BWF3
Length = 364
Score = 201 (75.8 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 49/144 (34%), Positives = 79/144 (54%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP--RAG 144
+ RCG+ GHWSKECP R+G
Sbjct: 158 DQSGCYRCGKEGHWSKECPIDRSG 181
Score = 138 (53.6 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VNINV 67
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 115 (45.5 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>UNIPROTKB|Q4R979 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9541 "Macaca
fascicularis" [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0002190 "cap-independent
translational initiation" evidence=ISS] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISS] [GO:0033554
"cellular response to stress" evidence=ISS] [GO:0035198 "miRNA
binding" evidence=ISS] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0043153
"entrainment of circadian clock by photoperiod" evidence=ISS]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISS] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISS] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISS] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISS] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISS] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISS] [GO:0097167 "circadian regulation of
translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149 GO:GO:0003730
GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10 GO:GO:0051403
GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 HSSP:Q99K48
HOVERGEN:HBG062217 GO:GO:0097158 GO:GO:0097167 GO:GO:0002192
GO:GO:0032055 EMBL:AB168217 ProteinModelPortal:Q4R979 SMR:Q4R979
PRIDE:Q4R979 Uniprot:Q4R979
Length = 364
Score = 201 (75.8 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 49/144 (34%), Positives = 79/144 (54%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP--RAG 144
+ RCG+ GHWSKECP R+G
Sbjct: 158 DQSGCYRCGKEGHWSKECPIDRSG 181
Score = 138 (53.6 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VNINV 67
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 115 (45.5 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>UNIPROTKB|E2RS70 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
KO:K13187 CTD:5936 OMA:IPTIDTC EMBL:AAEX03011624 RefSeq:XP_852303.1
ProteinModelPortal:E2RS70 Ensembl:ENSCAFT00000019680 GeneID:610648
KEGG:cfa:610648 NextBio:20896200 Uniprot:E2RS70
Length = 365
Score = 201 (75.8 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 49/144 (34%), Positives = 79/144 (54%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP--RAG 144
+ RCG+ GHWSKECP R+G
Sbjct: 158 DQSGCYRCGKEGHWSKECPIDRSG 181
Score = 138 (53.6 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VNINV 67
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 115 (45.5 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE+YG V+ECD+VK+Y
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYA 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>UNIPROTKB|H9L1A3 [details] [associations]
symbol:LOC100859076 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883 EMBL:AADN02074654
Ensembl:ENSGALT00000029963 OMA:EAYNEQY Uniprot:H9L1A3
Length = 306
Score = 201 (75.8 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 47/139 (33%), Positives = 77/139 (55%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHHKLHGVCINVEAS---KNKSKASTKLHVGNISPTCTNLELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG V+ECDIV++Y FVH++ + D + I+ L+ GK M+V ++ + +
Sbjct: 98 FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMRVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 158 DKSGCYRCGKEGHWSKECP 176
Score = 136 (52.9 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKLHG 62
Score = 129 (50.5 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 113 (44.8 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 289 GTVVVIEARNMPGFSSVGTFKIFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFV 346
G + +EA +S K+ +GN++P T++EL R FE+YG V+ECD+VK+Y FV
Sbjct: 62 GVCINVEASKNKSKAST---KLHVGNISPTCTNLEL-RAKFEEYGPVIECDIVKDYAFV 116
>UNIPROTKB|B8ZZ74 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HOVERGEN:HBG002295 HGNC:HGNC:14219 ChiTaRS:RBM14 IPI:IPI00917085
ProteinModelPortal:B8ZZ74 SMR:B8ZZ74 STRING:B8ZZ74 PRIDE:B8ZZ74
Ensembl:ENST00000409372 HOGENOM:HOG000089965 ArrayExpress:B8ZZ74
Bgee:B8ZZ74 Uniprot:B8ZZ74
Length = 159
Score = 111 (44.1 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 341
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112
Score = 108 (43.1 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNG 99
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHG 57
Score = 103 (41.3 bits), Expect = 0.00097, P = 0.00097
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 5 HMENDEEGRTAIKELNGQIVNE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G + + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVR 78
LF G V+ECD+V+
Sbjct: 98 LFERRGRVIECDVVK 112
>ZFIN|ZDB-GENE-030131-3019 [details] [associations]
symbol:rbm4.2 "RNA binding motif protein 4.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-030131-3019 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339
HOGENOM:HOG000026790 HOVERGEN:HBG062217 EMBL:BC044503 EMBL:BC153457
IPI:IPI00493444 RefSeq:NP_955971.1 UniGene:Dr.123162 SMR:Q803F7
STRING:Q803F7 GeneID:557528 KEGG:dre:557528 CTD:557528
InParanoid:Q803F7 NextBio:20882029 Uniprot:Q803F7
Length = 385
Score = 189 (71.6 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 46/143 (32%), Positives = 74/143 (51%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
HM++ +E AI++L+ + + + +E + KG +TK+ V N+S E+R
Sbjct: 41 HMDSKKEAEAAIRKLHHYELKGQAINVELS---KGKPRGSTKLHVSNISSGCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGKPMKVVVA-GFISSILSCL 122
F YG VVECDIV++Y FVH++ D + I L GK +KV ++ + +
Sbjct: 98 FEEYGPVVECDIVKDYAFVHMERMDDAMEAISGLENTTFQGKLIKVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECPRAGN 145
+ CG GHWSK+C + N
Sbjct: 158 DQTGCYICGEQGHWSKDCRHSQN 180
Score = 146 (56.5 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 27/65 (41%), Positives = 44/65 (67%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDG 104
K+F+GNLS + A ++R LF +G V ECD+++NYGFVH+DS + I++L+ + G
Sbjct: 3 KIFIGNLSPTSTADDLRSLFSEFGIVKECDVLKNYGFVHMDSKKEAEAAIRKLHHYELKG 62
Query: 105 KPMKV 109
+ + V
Sbjct: 63 QAINV 67
Score = 122 (48.0 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
KIFIGN++P ++ + +R LF ++G V ECDV+KNYGFV
Sbjct: 3 KIFIGNLSPTSTADDLRSLFSEFGIVKECDVLKNYGFV 40
Score = 113 (44.8 bits), Expect = 0.00095, P = 0.00095
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 273 KQTKTTIVWSPRYQSFGTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKY 331
K+ + I Y+ G + +E ++ P G+ K+ + N++ G + + +R FE+Y
Sbjct: 46 KEAEAAIRKLHHYELKGQAINVELSKGKPR----GSTKLHVSNISSGCTNQELRAKFEEY 101
Query: 332 GKVVECDVVKNYGFV 346
G VVECD+VK+Y FV
Sbjct: 102 GPVVECDIVKDYAFV 116
>UNIPROTKB|E2RS43 [details] [associations]
symbol:RBM14 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0016575 "histone deacetylation"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003676
GO:GO:0005667 GO:GO:0030374 GO:GO:0016575
GeneTree:ENSGT00390000020883 CTD:10432 KO:K13189 OMA:SLTSYGA
EMBL:AAEX03011624 EMBL:AAEX03011625 RefSeq:XP_852283.2
ProteinModelPortal:E2RS43 Ensembl:ENSCAFT00000019697 GeneID:610639
KEGG:cfa:610639 NextBio:20896193 Uniprot:E2RS43
Length = 669
Score = 161 (61.7 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 41/107 (38%), Positives = 59/107 (55%)
Query: 5 HMENDEEGRTAIKELNGQIVNE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G + + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 129 (50.5 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 108 (43.1 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNG 99
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHG 57
>UNIPROTKB|Q96PK6 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IPI] [GO:0016592 "mediator complex"
evidence=NAS] [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=NAS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0016575 "histone deacetylation" evidence=IPI] [GO:0009725
"response to hormone stimulus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=NAS]
[GO:0042921 "glucocorticoid receptor signaling pathway"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0006310
"DNA recombination" evidence=NAS] [GO:0006281 "DNA repair"
evidence=NAS] [GO:0006260 "DNA replication" evidence=NAS]
[GO:0030674 "protein binding, bridging" evidence=NAS] [GO:0005667
"transcription factor complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0042921 GO:GO:0000166 GO:GO:0006260 GO:GO:0006281
EMBL:CH471076 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0030674
GO:GO:0003723 GO:GO:0005667 GO:GO:0006310 GO:GO:0009725
GO:GO:0030529 GO:GO:0030520 GO:GO:0030374 GO:GO:0016575
eggNOG:COG0724 EMBL:AP001157 GO:GO:0016592 GO:GO:0001104 CTD:10432
HOGENOM:HOG000065673 HOVERGEN:HBG053180 KO:K13189 OrthoDB:EOG45X7XS
EMBL:AF315632 EMBL:AF315633 EMBL:AF080561 EMBL:AK021768
EMBL:AK222830 EMBL:BC000488 EMBL:BE885635 EMBL:CR749306
IPI:IPI00013174 IPI:IPI00644837 IPI:IPI01009009
RefSeq:NP_001185765.1 RefSeq:NP_001185775.1 RefSeq:NP_006319.1
UniGene:Hs.533712 PDB:2DNP PDBsum:2DNP ProteinModelPortal:Q96PK6
SMR:Q96PK6 IntAct:Q96PK6 MINT:MINT-2798129 STRING:Q96PK6
PhosphoSite:Q96PK6 DMDM:73913750 PaxDb:Q96PK6 PRIDE:Q96PK6
DNASU:10432 Ensembl:ENST00000310137 Ensembl:ENST00000393979
Ensembl:ENST00000500635 GeneID:100526737 GeneID:10432
KEGG:hsa:10432 UCSC:uc001oit.3 UCSC:uc009yri.3 CTD:100526737
GeneCards:GC11P066384 HGNC:HGNC:14219 HPA:HPA006628 MIM:612409
neXtProt:NX_Q96PK6 PharmGKB:PA34263 InParanoid:Q96PK6 OMA:SLTSYGA
PhylomeDB:Q96PK6 ChiTaRS:RBM14 ChiTaRS:RBM14-RBM4
EvolutionaryTrace:Q96PK6 GenomeRNAi:10432 NextBio:39542
ArrayExpress:Q96PK6 Bgee:Q96PK6 Genevestigator:Q96PK6
GermOnline:ENSG00000173959 Uniprot:Q96PK6
Length = 669
Score = 161 (61.7 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 41/107 (38%), Positives = 59/107 (55%)
Query: 5 HMENDEEGRTAIKELNGQIVNE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G + + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 129 (50.5 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 108 (43.1 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNG 99
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHG 57
>UNIPROTKB|F1MI47 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
[GO:0016575 "histone deacetylation" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003676 GO:GO:0005667 GO:GO:0030374
GO:GO:0016575 GeneTree:ENSGT00390000020883 IPI:IPI00690613
UniGene:Bt.91172 OMA:SLTSYGA EMBL:DAAA02063594
Ensembl:ENSBTAT00000001619 Uniprot:F1MI47
Length = 669
Score = 160 (61.4 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 41/107 (38%), Positives = 59/107 (55%)
Query: 5 HMENDEEGRTAIKELNGQIVNE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G + + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 129 (50.5 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 108 (43.1 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNG 99
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHG 57
>UNIPROTKB|Q5EA36 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 EMBL:BT020733 IPI:IPI00690613
RefSeq:NP_001014901.1 UniGene:Bt.91172 ProteinModelPortal:Q5EA36
SMR:Q5EA36 STRING:Q5EA36 PRIDE:Q5EA36 GeneID:511512 KEGG:bta:511512
CTD:10432 HOGENOM:HOG000065673 HOVERGEN:HBG053180 InParanoid:Q5EA36
KO:K13189 OrthoDB:EOG45X7XS NextBio:20869968 Uniprot:Q5EA36
Length = 669
Score = 160 (61.4 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 41/107 (38%), Positives = 59/107 (55%)
Query: 5 HMENDEEGRTAIKELNGQIVNE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G + + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 129 (50.5 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 108 (43.1 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNG 99
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHG 57
>MGI|MGI:1929092 [details] [associations]
symbol:Rbm14 "RNA binding motif protein 14" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016575 "histone deacetylation" evidence=ISO]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1929092 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006351
GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0016575
eggNOG:COG0724 GeneTree:ENSGT00390000020883 CTD:10432
HOGENOM:HOG000065673 HOVERGEN:HBG053180 KO:K13189 OrthoDB:EOG45X7XS
OMA:SLTSYGA ChiTaRS:RBM14 EMBL:AK004928 EMBL:AK088201 EMBL:AK167503
EMBL:BC010294 IPI:IPI00404707 IPI:IPI00649362 RefSeq:NP_063922.2
UniGene:Mm.276338 UniGene:Mm.441002 ProteinModelPortal:Q8C2Q3
SMR:Q8C2Q3 DIP:DIP-58946N IntAct:Q8C2Q3 STRING:Q8C2Q3
PhosphoSite:Q8C2Q3 PaxDb:Q8C2Q3 PRIDE:Q8C2Q3
Ensembl:ENSMUST00000006625 GeneID:56275 KEGG:mmu:56275
UCSC:uc008gay.1 UCSC:uc008gaz.1 InParanoid:Q8C2Q3 NextBio:312164
Bgee:Q8C2Q3 CleanEx:MM_RBM14 Genevestigator:Q8C2Q3
GermOnline:ENSMUSG00000006456 Uniprot:Q8C2Q3
Length = 669
Score = 160 (61.4 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 41/107 (38%), Positives = 59/107 (55%)
Query: 5 HMENDEEGRTAIKELNGQIVNE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G + + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V++Y FVH++ D I +LNG V GK + V
Sbjct: 98 LFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
Score = 129 (50.5 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK+Y FV
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFV 117
Score = 108 (43.1 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNG 99
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHG 57
>ZFIN|ZDB-GENE-050522-496 [details] [associations]
symbol:rbm14a "RNA binding motif protein 14a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-050522-496 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
GeneTree:ENSGT00390000020883 EMBL:BX511175 EMBL:BC095368
EMBL:BC157376 IPI:IPI00487638 RefSeq:NP_001108616.1
UniGene:Dr.77963 STRING:Q503D7 Ensembl:ENSDART00000009234
Ensembl:ENSDART00000122073 GeneID:323721 KEGG:dre:323721 CTD:323721
HOGENOM:HOG000063724 HOVERGEN:HBG062132 InParanoid:Q503D7
OMA:HMERKEE OrthoDB:EOG4Q2DFQ NextBio:20808405 Uniprot:Q503D7
Length = 471
Score = 185 (70.2 bits), Expect = 9.4e-12, P = 9.4e-12
Identities = 46/145 (31%), Positives = 77/145 (53%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H++ + +AI++LNG+ + L +E + KG +TKVFVGNL + ++ +L
Sbjct: 46 HLQGEGAADSAIRDLNGREYRGRSLVVEES---KGRPLNSTKVFVGNLCASCSVEDLYDL 102
Query: 65 FVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGFIS 116
F PYG V++CD V+ Y FV+++ D + I+ L+G G+P+ V +S
Sbjct: 103 FSPYGKVLDCDKVKTKPSSLTGYAFVYMEHKEDAEQAIEGLHGTTFMGRPLAVE----LS 158
Query: 117 SILSCLNVIFFIRCGRGGHWSKECP 141
+ N + CG GH++ ECP
Sbjct: 159 KVQQSTNKVPCASCGAHGHFAGECP 183
Score = 111 (44.1 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDI-NKCIKELNG 99
++ K+FVGNL T ++ LF P+G VV ++R + FVH+ + I++LNG
Sbjct: 3 DSSAVKLFVGNLDLETTQDDLIALFAPFGEVVHITVLRQFAFVHLQGEGAADSAIRDLNG 62
Query: 100 MMVDGKPMKV 109
G+ + V
Sbjct: 63 REYRGRSLVV 72
Score = 95 (38.5 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 290 TVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 341
++VV E++ P + + K+F+GN+ SVE + LF YGKV++CD VK
Sbjct: 69 SLVVEESKGRP----LNSTKVFVGNLCASCSVEDLYDLFSPYGKVLDCDKVK 116
>WB|WBGene00004384 [details] [associations]
symbol:rnp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003723
EMBL:Z78019 EMBL:U21302 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 PIR:T28063 RefSeq:NP_001256408.1
ProteinModelPortal:Q10667 SMR:Q10667 DIP:DIP-24668N IntAct:Q10667
MINT:MINT-1103041 STRING:Q10667 PaxDb:Q10667
EnsemblMetazoa:ZK863.7a GeneID:179672 KEGG:cel:CELE_ZK863.7
UCSC:ZK863.7 CTD:179672 WormBase:ZK863.7 HOGENOM:HOG000022464
InParanoid:Q10667 OMA:FCKVTEC NextBio:906394 ArrayExpress:Q10667
Uniprot:Q10667
Length = 305
Score = 175 (66.7 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 36/99 (36%), Positives = 57/99 (57%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMVDG 104
+K+FVGNL DN + +++++F P+ V ECDIV+NY FVHI+ D++ I L G +DG
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIEEDDVDPIITRLTGYTIDG 62
Query: 105 KPMKVVVA-GFISSILSCLNVIFFIRCGRGGHWSKECPR 142
K + + + + N F RC H + +CP+
Sbjct: 63 KVVNIKKSTSKLRPTPGMPNRCF--RCQSDEHRTPQCPQ 99
>UNIPROTKB|E9PTC9 [details] [associations]
symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306891 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00781602 Ensembl:ENSRNOT00000054844 ArrayExpress:E9PTC9
Uniprot:E9PTC9
Length = 615
Score = 139 (54.0 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 39/107 (36%), Positives = 54/107 (50%)
Query: 5 HMENDEEGRTAIKELNGQIVNE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G + + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V+ Y F H+D D LN V GK + V
Sbjct: 98 LFERRGRVIECDVVKVYSFAHLDKQADAEPACMCLNRSEVSGKRINV 144
Score = 121 (47.7 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGF 345
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK Y F
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKVYSF 116
Score = 108 (43.1 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNG 99
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHG 57
>UNIPROTKB|F1RUT8 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 GeneTree:ENSGT00390000020883 OMA:VYYNDAY
Ensembl:ENSSSCT00000014136 Uniprot:F1RUT8
Length = 359
Score = 165 (63.1 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 41/140 (29%), Positives = 72/140 (51%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S E+R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKASTKLHVGNISPTCTNQELRAK 97
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPDINKCIKE--LNGMMVDGKPMKVVVA-GFISSILSC 121
F YG ++ C + ++Y F+H++ C++ L+G GK M V ++ + +
Sbjct: 98 FEAYGGLLRCFLKKDYIFIHLEREQ-PACLRVPGLDGTQAQGKRMHVQLSTSRLRTAPGM 156
Query: 122 LNVIFFIRCGRGGHWSKECP 141
+ RCG+ GHWSKECP
Sbjct: 157 GDQSGCYRCGKEGHWSKECP 176
Score = 138 (53.6 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VNINV 67
Score = 129 (50.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 81 (33.6 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R FE YG ++ C + K+Y
Sbjct: 58 YKLHGVNINVEASKNKSKAST---KLHVGNISPTCTNQELRAKFEAYGGLLRCFLKKDYI 114
Query: 345 FV 346
F+
Sbjct: 115 FI 116
>UNIPROTKB|E9PTZ4 [details] [associations]
symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306891 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003676 GO:GO:0005667 GO:GO:0030374 GO:GO:0016575
IPI:IPI00948500 Ensembl:ENSRNOT00000026621 ArrayExpress:E9PTZ4
Uniprot:E9PTZ4
Length = 667
Score = 139 (54.0 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 39/107 (36%), Positives = 54/107 (50%)
Query: 5 HMENDEEGRTAIKELNGQIVNE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G + + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGAVRAIEALHGHELRPGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDGKPMKV 109
LF G V+ECD+V+ Y F H+D D LN V GK + V
Sbjct: 98 LFERRGRVIECDVVKVYSFAHLDKQADAEPACMCLNRSEVSGKRINV 144
Score = 121 (47.7 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGF 345
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK Y F
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKVYSF 116
Score = 108 (43.1 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNG 99
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHG 57
>UNIPROTKB|B0LM41 [details] [associations]
symbol:RBM14/RBM4 fusion "Transcriptional coactivator CoAZ"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001157 UniGene:Hs.533712
GeneID:100526737 CTD:100526737 ChiTaRS:RBM14-RBM4
HOGENOM:HOG000026790 HOVERGEN:HBG062217 UniGene:Hs.523822
EMBL:EU287938 IPI:IPI00719549 RefSeq:NP_001185774.1 SMR:B0LM41
STRING:B0LM41 Ensembl:ENST00000412278 KEGG:hsa:100526737
UCSC:uc009yrk.3 HGNC:HGNC:38840 OrthoDB:EOG4M65KF
GenomeRNAi:100526737 Uniprot:B0LM41
Length = 339
Score = 111 (44.1 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVK 341
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK
Sbjct: 63 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112
Score = 108 (43.1 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNG 99
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+ ++ + I+ L+G
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHG 57
Score = 103 (41.3 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 5 HMENDEEGRTAIKELNGQIVNE-KPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
HM + AI+ L+G + + L +E SR P T K+FVGN+S + E+R
Sbjct: 41 HMRENAGALRAIEALHGHELRPGRALVVEM--SRPRPLN-TWKIFVGNVSAACTSQELRS 97
Query: 64 LFVPYGTVVECDIVR 78
LF G V+ECD+V+
Sbjct: 98 LFERRGRVIECDVVK 112
Score = 76 (31.8 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 129 RCGRGGHWSKECP--RAG 144
RCG+ GHWSKECP R+G
Sbjct: 139 RCGKEGHWSKECPIDRSG 156
>UNIPROTKB|D4A1U6 [details] [associations]
symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306891 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00200107 PRIDE:D4A1U6 Ensembl:ENSRNOT00000026636
ArrayExpress:D4A1U6 Uniprot:D4A1U6
Length = 566
Score = 119 (46.9 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 289 GTVVVIE-ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGF 345
G +V+E +R P + T+KIF+GNV+ + + +R LFE+ G+V+ECDVVK + F
Sbjct: 60 GRALVVEMSRPRP----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKGWAF 113
Score = 103 (41.3 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 46 KVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHI 85
K+FVGN+ PE + LF PYGTV+ C +++ + FVH+
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHM 42
>UNIPROTKB|F1RUT1 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
Ensembl:ENSSSCT00000014143 OMA:NTAMANH Uniprot:F1RUT1
Length = 356
Score = 138 (53.6 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
K+F+GNL E+R LF YG V+ECDI++NYGFVHI D I+ L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 105 KPMKV 109
+ V
Sbjct: 63 VNINV 67
Score = 138 (53.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 40/144 (27%), Positives = 69/144 (47%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
H+E+ AI+ L+ ++ + +EA+ K + +TK+ VGN+S +R
Sbjct: 41 HIEDKTAAEDAIRNLHHYKLHGVNINVEAS---KNKSKTSTKLHVGNISPTCTNKSLRSK 97
Query: 65 FVPYGTVVECDIVRNYGFVHIDSPDINKCIKELNGMMV-DGKPMKVVVA-GFISSILSCL 122
F+ YG DI +++ FVH ++ + + GK M V ++ + +
Sbjct: 98 FLCYGRAFILDIFKDFFFVHQQKKKKKVHALRISDLTIFKGKRMHVQLSTSRLRTAPGMG 157
Query: 123 NVIFFIRCGRGGHWSKECP--RAG 144
+ RCG+ GHWSKECP R+G
Sbjct: 158 DQSGCYRCGKEGHWSKECPIDRSG 181
Score = 129 (50.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGFV 346
K+FIGN+ + + IR LFE+YGKV+ECD++KNYGFV
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFV 40
Score = 69 (29.3 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 285 YQSFGTVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYG 344
Y+ G + +EA +S K+ +GN++P + + +R F YG+ D+ K++
Sbjct: 58 YKLHGVNINVEASKNKSKTST---KLHVGNISPTCTNKSLRSKFLCYGRAFILDIFKDFF 114
Query: 345 FV 346
FV
Sbjct: 115 FV 116
>FB|FBgn0039730 [details] [associations]
symbol:CG7903 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 EMBL:AY071654 ProteinModelPortal:Q8SYB8
SMR:Q8SYB8 PaxDb:Q8SYB8 PRIDE:Q8SYB8 FlyBase:FBgn0039730
eggNOG:NOG315296 InParanoid:Q8SYB8 OrthoDB:EOG4HDR9C
ArrayExpress:Q8SYB8 Bgee:Q8SYB8 Uniprot:Q8SYB8
Length = 384
Score = 146 (56.5 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 34/74 (45%), Positives = 48/74 (64%)
Query: 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKC-IKELNG 99
NT T KVFVG+L + E+R LF YG+VVECD++ FVH+++ D+ + I LNG
Sbjct: 2 NT-TAKVFVGSLP-RCKPEELRRLFTNYGSVVECDVMNRCAFVHLENTDMAEAAIAALNG 59
Query: 100 MMVDGKPMKVVVAG 113
+ G+P+ VV AG
Sbjct: 60 TIFKGQPI-VVEAG 72
>DICTYBASE|DDB_G0280393 [details] [associations]
symbol:DDB_G0280393 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0280393 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AAFI02000035 Gene3D:4.10.60.10 SUPFAM:SSF57756
ProtClustDB:CLSZ2846809 RefSeq:XP_641373.1
ProteinModelPortal:Q54VI2 PRIDE:Q54VI2 EnsemblProtists:DDB0233308
GeneID:8622507 KEGG:ddi:DDB_G0280393 eggNOG:NOG242322
InParanoid:Q54VI2 OMA:PRERHTE Uniprot:Q54VI2
Length = 412
Score = 141 (54.7 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 33/103 (32%), Positives = 55/103 (53%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDG 104
+V+VG +S+ T + + F+ +G V+ CD+ Y FV D+ I+E++ +VDG
Sbjct: 176 RVYVGRISNKTTRESLEDSFLKFGKVLSCDVKNGYAFVEFDNEKSARDAIEEMHDSIVDG 235
Query: 105 KPMKVVVAGFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFR 147
+ K++V S + F R GRG HW++ CP+ G R
Sbjct: 236 E--KILVEKSHSG-KKHPDECFICR-GRG-HWARSCPKGGRGR 273
>UNIPROTKB|J9PA38 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431 EMBL:AAEX03013949
GeneID:403667 KEGG:cfa:403667 RefSeq:XP_003639909.1
Ensembl:ENSCAFT00000044157 Uniprot:J9PA38
Length = 135
Score = 117 (46.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
+V++G LS N R +++ F YG ++E D+ YGFV DS D + + ELNG + G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 105 KPMKVVV 111
+ +V+V
Sbjct: 63 E--RVIV 67
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 124 (48.7 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 37/121 (30%), Positives = 59/121 (48%)
Query: 8 NDE-EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRE 63
ND G A+ ELN ++ KP +I S++ P T VF+ NL + +
Sbjct: 91 NDTAHGERALDELNYTLIKGKPCRI--MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHD 148
Query: 64 LFVPYGTVVECDIVRN-------YGFVHIDSPDI-NKCIKELNGMMVDGKPMKVVVAGFI 115
F +G ++ C + ++ YGFVH ++ + N IK +NGM+++ K KV V I
Sbjct: 149 TFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDK--KVFVGHHI 206
Query: 116 S 116
S
Sbjct: 207 S 207
Score = 61 (26.5 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN 342
I+I N++P E R LFEK+G++ + ++
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRD 257
Score = 49 (22.3 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 295 EARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN 342
EA M S +++ N+ + +R LF YG + V+++
Sbjct: 313 EAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRD 360
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 80 (33.2 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCI--K 95
+F+G LS +T ++++ F +G VV+C + R +GFV +S ++K + K
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 96 E--LNGMMVDGKPMKVV 110
E LNG ++D K K +
Sbjct: 61 EHKLNGKVIDPKRAKAM 77
Score = 60 (26.2 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKV 334
KIF+G ++P T E IR F +G+V
Sbjct: 85 KIFVGGLSPDTPEEKIREYFGGFGEV 110
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 134 (52.2 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 34/116 (29%), Positives = 55/116 (47%)
Query: 4 GHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
G + E +T +K GQ+ +KP KIE + ++V NL D +R+
Sbjct: 264 GRAQKKVERQTELKHKFGQMKQDKP-KIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRK 322
Query: 64 LFVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
F P+GT+ + + +GFV SP+ K + E+NG +V KP+ V +A
Sbjct: 323 EFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 378
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 109 (43.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSPD-INKCI 94
+ ++FV LS T +R+LF P+G + E ++R+ +GF+ DS D K +
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 95 KELNGMMVDGKPMKVVVAGFISSILSCLN 123
K L+G +VDG+ + V VA + + +N
Sbjct: 66 KSLDGKIVDGRLIFVEVAKNAEEVRAGIN 94
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 111 (44.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 29/110 (26%), Positives = 57/110 (51%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGP---NTPTTKVFVGNLSDNTRAPEVRELFVP 67
+G A++ELN ++ +P +I S++ P T VF+ NL + + F
Sbjct: 114 DGEKALEELNYTLIKGRPCRI--MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAA 171
Query: 68 YGTVVECDIVRN-------YGFVHIDSPDI-NKCIKELNGMMVDGKPMKV 109
+G ++ C + ++ YGFVH ++ + ++ IK +NGM+++ K + V
Sbjct: 172 FGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV 221
Score = 68 (29.0 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN 342
I++ N+NP + + R LFEKYG V + ++
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARD 276
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 124 (48.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 38/132 (28%), Positives = 63/132 (47%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKV---FVGNLSDNTRAPEVREL 64
N+ + A+ LN +V+ KP +I S + P T V FV NL + +
Sbjct: 236 NNHDAERALDTLNYTLVHGKPCRI--MWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDT 293
Query: 65 FVPYGTVVECD------IVRNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAGFISS 117
F +G ++ C I + YG+VH ++ D K I+++NG ++ GKP+ V F+S
Sbjct: 294 FSSFGNILSCKVEFEKGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINV--ERFVSK 351
Query: 118 I--LSCLNVIFF 127
+ N +FF
Sbjct: 352 VERYKVENKVFF 363
Score = 54 (24.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 310 IFIGNVNPGTSVELIRPLFEKYG-----KVVECDVVKNYGF 345
+FI N++ +LI+ F K+G K+V+ + +N GF
Sbjct: 472 LFINNIDESIDRDLIKEEFAKHGTIIGIKIVQDENARNKGF 512
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 119 (46.9 bits), Expect = 0.00045, P = 0.00045
Identities = 32/118 (27%), Positives = 56/118 (47%)
Query: 3 SGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVR 62
+G +D+E + + E + E +S G ++V NL D ++R
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 63 ELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGKPMKVVVA 112
ELF +GT+ C ++R+ GFV + + ++ + E+NG MV GKP+ V +A
Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALA 403
Score = 118 (46.6 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 29/112 (25%), Positives = 60/112 (53%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT-----TKVFVGNLSDNTRAPEV 61
+ ++ + AI++LNG+++N+K + + ++ + T V+V NLS+ T E+
Sbjct: 182 DTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDEL 241
Query: 62 RELFVPYGTVVECDIVRN-------YGFVHIDSP-DINKCIKELNGMMVDGK 105
+ F YG++ ++R+ +GFV+ ++P D + ++ LNG D K
Sbjct: 242 KTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDK 293
Score = 110 (43.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 32/117 (27%), Positives = 57/117 (48%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIE-AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFV 66
N ++ A+++LN +N K ++I ++ + +FV NL + + E F
Sbjct: 96 NTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFS 155
Query: 67 PYGTVVECDIV-------RNYGFVHIDSPDINK-CIKELNGMMVDGKPMKVVVAGFI 115
GT+V C + R YGFV D+ D K I++LNG +++ K ++ V F+
Sbjct: 156 GCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDK--QIFVGPFL 210
Score = 56 (24.8 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 10/48 (20%), Positives = 25/48 (52%)
Query: 295 EARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN 342
E + G + +++ N++ + E +R LF ++G + C V+++
Sbjct: 315 EQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRD 362
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 120 (47.3 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 31/116 (26%), Positives = 56/116 (48%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK G T V++ N +
Sbjct: 57 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 116
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 117 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 172
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 118 (46.6 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 30/122 (24%), Positives = 65/122 (53%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ ++ ++ A+ +N ++ KP++I S++ P+ + +FV NL + +
Sbjct: 58 NFQHTKDAEHALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDKSINNKAL 115
Query: 62 RELFVPYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVVVAGF 114
+ +G ++ C++V + YGFVH ++ + + IK++NGM+++G+ KV V F
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR--KVFVGQF 173
Query: 115 IS 116
S
Sbjct: 174 KS 175
Score = 41 (19.5 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFV 346
++I N E ++ LF K+G + V+ K +GFV
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFV 236
>TAIR|locus:2049766 [details] [associations]
symbol:RS2Z33 "arginine/serine-rich zinc
knuckle-containing protein 33" species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0000245 "spliceosomal
complex assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0008380
"RNA splicing" evidence=NAS] [GO:0005829 "cytosol" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002685 GO:GO:0000166
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
EMBL:AC005896 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
UniGene:At.48558 UniGene:At.71153 GO:GO:0000245 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 PIR:F84791 EMBL:AJ293801
EMBL:AY072315 EMBL:AY114563 EMBL:AK176551 EMBL:BX842463
EMBL:BX842467 EMBL:AK176666 IPI:IPI00543174 RefSeq:NP_850280.1
RefSeq:NP_973619.1 RefSeq:NP_973620.1 ProteinModelPortal:Q8VYA5
SMR:Q8VYA5 IntAct:Q8VYA5 STRING:Q8VYA5 PRIDE:Q8VYA5 ProMEX:Q8VYA5
EnsemblPlants:AT2G37340.1 GeneID:818311 KEGG:ath:AT2G37340
TAIR:At2g37340 InParanoid:Q8VYA5 OMA:NNGDDPS PhylomeDB:Q8VYA5
ProtClustDB:CLSN2680093 Genevestigator:Q8VYA5 Uniprot:Q8VYA5
Length = 290
Score = 123 (48.4 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 37/123 (30%), Positives = 57/123 (46%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVD 103
T+++VG LS TR ++ LF YG V + D+ R+Y FV P D + L+G D
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFD 70
Query: 104 GKPMKVVVA-GF------ISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKSK 156
G + V + G S CG GHW+++C AG++++ CY +
Sbjct: 71 GSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCT-AGDWKNK-CYRCGE 128
Query: 157 SSH 159
H
Sbjct: 129 RGH 131
>ZFIN|ZDB-GENE-030131-591 [details] [associations]
symbol:srsf4 "serine/arginine-rich splicing factor
4" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-591 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6429 EMBL:BC046895 EMBL:CR450687 IPI:IPI00503693
RefSeq:NP_955868.1 RefSeq:XP_003200617.1 UniGene:Dr.4165
Ensembl:ENSDART00000125200 GeneID:321872 KEGG:dre:321872
InParanoid:Q802Y1 NextBio:20807565 Uniprot:Q802Y1
Length = 366
Score = 120 (47.3 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVD 103
++V+VG LS R +V F YG ++E D+ YGFV D P D + + +LNG +
Sbjct: 2 SRVYVGKLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKDLC 61
Query: 104 GKPMKVVV 111
GK +V+V
Sbjct: 62 GK--RVIV 67
Score = 44 (20.5 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 205 SRRFGAVGGPGPLDRFG 221
S R+G GG G DR+G
Sbjct: 84 SNRYGRGGGGGGGDRYG 100
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 128 (50.1 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 36/123 (29%), Positives = 61/123 (49%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTP---TTKVFVGNLSDNTRAPEV 61
+ N E+G A+ ELN ++ +P +I S++ P+ T VF+ NL +
Sbjct: 127 NFHNMEDGEKALDELNYTLIKGRPCRI--MWSQRDPSLRKMGTGNVFIKNLDPAIDNKAL 184
Query: 62 RELFVPYGTVVECDIV-------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVAG 113
+ F +G ++ C + + YGFVH DS + N I+ +NGM+++ K KV V
Sbjct: 185 HDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDK--KVYVGH 242
Query: 114 FIS 116
+S
Sbjct: 243 HVS 245
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 100 (40.3 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 32/121 (26%), Positives = 60/121 (49%)
Query: 4 GHMENDEEGRT--AIKELNGQIVNEKPLKI----EAATSRKGPNTPTT-KVFVGNLSDNT 56
G +E D+ G A++ LNG+ V++ +++ +AATS +T +FVG+LS+
Sbjct: 128 GFVEYDDPGAADRAMQTLNGRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEV 187
Query: 57 RAPEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPM 107
+ + F +G+V E ++ R YGFV D D K + ++G + + +
Sbjct: 188 NDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAI 247
Query: 108 K 108
+
Sbjct: 248 R 248
Score = 68 (29.0 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 311 FIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGF 345
++GN+ P T+ + PLF+ +G VVE + GF
Sbjct: 305 YVGNLTPYTTANDVVPLFQNFGYVVESRFQADRGF 339
>TAIR|locus:2083936 [details] [associations]
symbol:RS2Z32 "arginine/serine-rich zinc
knuckle-containing protein 32" species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA;TAS] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132966
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0000398 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 EMBL:AY095996 EMBL:BT001034
EMBL:AK316697 IPI:IPI00525747 PIR:F84791 PIR:T45890
RefSeq:NP_190918.3 RefSeq:NP_851015.1 UniGene:At.26777
ProteinModelPortal:Q9FYB7 SMR:Q9FYB7 STRING:Q9FYB7 PRIDE:Q9FYB7
EnsemblPlants:AT3G53500.2 GeneID:824518 KEGG:ath:AT3G53500
TAIR:At3g53500 InParanoid:Q9FYB7 OMA:GSPKENG PhylomeDB:Q9FYB7
ProtClustDB:CLSN2680397 Genevestigator:Q9FYB7 Uniprot:Q9FYB7
Length = 284
Score = 121 (47.7 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 38/129 (29%), Positives = 58/129 (44%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVD 103
T+++VG LS TR ++ LF YG V + D+ R+Y FV P D + L+G D
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFD 70
Query: 104 GKPMKVVVA-------------GFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSG 150
G + V + G C N CG GHW+++C AG++++
Sbjct: 71 GSRITVEASRGAPRGSRDNGSRGPPPGSGRCFN------CGVDGHWARDCT-AGDWKNK- 122
Query: 151 CYCKSKSSH 159
CY + H
Sbjct: 123 CYRCGERGH 131
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 102 (41.0 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 24/111 (21%), Positives = 57/111 (51%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ + + A+ +N ++ KP++I S++ P+ + VF+ NL + +
Sbjct: 2 NFQQPADAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAL 59
Query: 62 RELFVPYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGK 105
+ F +G ++ C +V + Y FVH ++ + +K I+++NGM+++ +
Sbjct: 60 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 110
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 124 (48.7 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 49/151 (32%), Positives = 72/151 (47%)
Query: 43 PTT--KVFVGNLSDNTRAPEV--RELFVPYGTVVECDIVR----NYGFVH-IDSPDINKC 93
PTT V+ GN+ +T+ E+ +E+F G + C ++R +YGFVH D +
Sbjct: 59 PTTCRSVYAGNI--HTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMA 116
Query: 94 IKELNGMMVDGKPMKV---VVAGFISSILSCLNVIFFIRCGRGGHWSKECPRAGNFRSSG 150
I LNG + G+PMKV G S N+ F+ G S E A F S
Sbjct: 117 IMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNI--FV-----GDLSPEVTDAALFDSFS 169
Query: 151 CYCKSKSSHKIYQDALVLWEDQDLWTGLVKG 181
+ S SS+ Y+DA V+W+ + TG +G
Sbjct: 170 AF-NSCSSY--YRDARVMWDQK---TGRSRG 194
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 96 (38.9 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 25 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------- 77
N P EAAT+++ K+F+G LS +T ++++ F +G VV+C +
Sbjct: 81 NSSPRHSEAATAQR----EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 136
Query: 78 -RNYGFVHI-DSPDINKCI--KE--LNGMMVDGKPMKVV 110
R +GFV +S ++K + KE LNG ++D K K +
Sbjct: 137 SRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAM 175
Score = 60 (26.2 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKV 334
KIF+G ++P T E IR F +G+V
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEV 208
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 99 (39.9 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 32/94 (34%), Positives = 43/94 (45%)
Query: 28 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------- 79
P++ AAT + T + V L N E R LF G + C +VR+
Sbjct: 32 PMQTGAAT-----DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 86
Query: 80 YGFV-HIDSPDINKCIKELNGMMVDGKPMKVVVA 112
YGFV +ID D K I LNG+ + K +KV A
Sbjct: 87 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 120
Score = 64 (27.6 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG + G + IF+ N++P + ++ LF +G V V++++
Sbjct: 259 NIPGHTGTG-WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 303
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 107 (42.7 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 34/106 (32%), Positives = 55/106 (51%)
Query: 18 ELNGQIVNEKPLKIEAATSRKGPNTPT----TKVFVGNLSDNTRAPEVRELFVPYGTVVE 73
+L GQ N + +A + G T T T ++VG+L N ++ + F GTVV
Sbjct: 5 QLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVT 64
Query: 74 ---C-DIVRN----YGFVHIDSP-DINKCIKELNGMMVDGKPMKVV 110
C D+V YG+V+ +P D + I+ELN + + GKP++V+
Sbjct: 65 VRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVM 110
Score = 62 (26.9 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 293 VIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGF 345
V+ + P G IFI N++ + + F +G +V C V K YGF
Sbjct: 109 VMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGF 168
Query: 346 V 346
V
Sbjct: 169 V 169
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 80 (33.2 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINK 92
+P++K+F+G LS T +R+ F +G + EC ++R+ +GFV P ++K
Sbjct: 14 SPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK 73
Query: 93 CI----KELNGMMVDGK 105
+ EL+ +D K
Sbjct: 74 VLGQPHHELDSKTIDPK 90
Score = 68 (29.0 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKV 334
T KIF+G ++ T VE ++ FE++GKV
Sbjct: 105 TKKIFVGGLSANTVVEDVKQYFEQFGKV 132
>FB|FBgn0004227 [details] [associations]
symbol:nonA "no on or off transient A" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA]
[GO:0045433 "male courtship behavior, veined wing generated song
production" evidence=NAS;IMP;TAS] [GO:0007601 "visual perception"
evidence=NAS;IMP;TAS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0008187 "poly-pyrimidine tract binding"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS]
[GO:0007632 "visual behavior" evidence=NAS] [GO:0042331
"phototaxis" evidence=NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0007601
GO:GO:0042331 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0045433 GO:GO:0007632
InterPro:IPR012975 Pfam:PF08075 EMBL:M33496 EMBL:X55902
EMBL:AY119651 PIR:JH0162 PIR:JH0163 RefSeq:NP_001014747.1
RefSeq:NP_523367.2 UniGene:Dm.179 ProteinModelPortal:Q04047
SMR:Q04047 MINT:MINT-810524 STRING:Q04047 PaxDb:Q04047
EnsemblMetazoa:FBtr0074232 GeneID:32603 KEGG:dme:Dmel_CG4211
CTD:32603 FlyBase:FBgn0004227 eggNOG:NOG298586
GeneTree:ENSGT00390000005004 InParanoid:Q04047 KO:K13219
OrthoDB:EOG4GTHVF GenomeRNAi:32603 NextBio:779385 Bgee:Q04047
GermOnline:CG4211 Uniprot:Q04047
Length = 700
Score = 127 (49.8 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 32/116 (27%), Positives = 65/116 (56%)
Query: 16 IKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC- 74
++ ++G +P+++ T G N +++VGNL+++ E+RE+F PYG + E
Sbjct: 277 LRSISGPTFELEPVEVPTETKFSGRN----RLYVGNLTNDITDDELREMFKPYGEISEIF 332
Query: 75 -DIVRNYGFVHID-SPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFI 128
++ +N+ F+ +D P+ K + L+G M G+ ++V A ++IL N+ F+
Sbjct: 333 SNLDKNFTFLKVDYHPNAEKAKRALDGSMRKGRQLRVRFAPN-ATILRVSNLTPFV 387
Score = 41 (19.5 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 312 IGNVNPGTSVELIRPLFEKYGKVVECDV 339
+ N+ P S EL+ FE +G + +
Sbjct: 380 VSNLTPFVSNELLYKSFEIFGPIERASI 407
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 99 (39.9 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 32/94 (34%), Positives = 43/94 (45%)
Query: 28 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------- 79
P++ AAT + T + V L N E R LF G + C +VR+
Sbjct: 34 PMQTGAAT-----DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 80 YGFV-HIDSPDINKCIKELNGMMVDGKPMKVVVA 112
YGFV +ID D K I LNG+ + K +KV A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 64 (27.6 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG + G + IF+ N++P + ++ LF +G V V++++
Sbjct: 274 NIPGHTGTG-WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 318
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 99 (39.9 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 32/94 (34%), Positives = 43/94 (45%)
Query: 28 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------- 79
P++ AAT + T + V L N E R LF G + C +VR+
Sbjct: 34 PMQTGAAT-----DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 80 YGFV-HIDSPDINKCIKELNGMMVDGKPMKVVVA 112
YGFV +ID D K I LNG+ + K +KV A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 64 (27.6 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG + G + IF+ N++P + ++ LF +G V V++++
Sbjct: 274 NIPGHTGTG-WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 318
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 99 (39.9 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 32/94 (34%), Positives = 43/94 (45%)
Query: 28 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------- 79
P++ AAT + T + V L N E R LF G + C +VR+
Sbjct: 39 PMQTGAAT-----DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 93
Query: 80 YGFV-HIDSPDINKCIKELNGMMVDGKPMKVVVA 112
YGFV +ID D K I LNG+ + K +KV A
Sbjct: 94 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127
Score = 64 (27.6 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG + G + IF+ N++P + ++ LF +G V V++++
Sbjct: 279 NIPGHTGTG-WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 323
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 99 (39.9 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 32/94 (34%), Positives = 43/94 (45%)
Query: 28 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------- 79
P++ AAT + T + V L N E R LF G + C +VR+
Sbjct: 27 PMQTGAAT-----DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 81
Query: 80 YGFV-HIDSPDINKCIKELNGMMVDGKPMKVVVA 112
YGFV +ID D K I LNG+ + K +KV A
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 64 (27.6 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG + G + IF+ N++P + ++ LF +G V V++++
Sbjct: 281 NIPGHTGTG-WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 325
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 99 (39.9 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 32/94 (34%), Positives = 43/94 (45%)
Query: 28 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------- 79
P++ AAT + T + V L N E R LF G + C +VR+
Sbjct: 27 PMQTGAAT-----DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 81
Query: 80 YGFV-HIDSPDINKCIKELNGMMVDGKPMKVVVA 112
YGFV +ID D K I LNG+ + K +KV A
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 64 (27.6 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG + G + IF+ N++P + ++ LF +G V V++++
Sbjct: 281 NIPGHTGTG-WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 325
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 100 (40.3 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 34/103 (33%), Positives = 44/103 (42%)
Query: 20 NGQIVNEKPLKIEAATSRKGPNTPT-TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR 78
NG N + T G N + T + V L N E R LF G + C +VR
Sbjct: 64 NGPSSNSRSCPSPMQTG--GSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR 121
Query: 79 N--------YGFV-HIDSPDINKCIKELNGMMVDGKPMKVVVA 112
+ YGFV +ID D K I LNG+ + K +KV A
Sbjct: 122 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 164
Score = 64 (27.6 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG + G + IF+ N++P + ++ LF +G V V++++
Sbjct: 316 NIPGHTGTG-WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 360
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 121 (47.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 30/120 (25%), Positives = 61/120 (50%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-PNTPTTKVFVGNLSDNTRAPEVRE 63
+ + + A+ +N +++ +P++I + G + VF+ NL D+ + +
Sbjct: 58 NFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYD 117
Query: 64 LFVPYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C +V R YGFVH ++ + N+ I+ +NGM+++ + KV V F S
Sbjct: 118 TFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDR--KVFVGHFKS 175
Score = 46 (21.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFV 346
+++ N++ G + +R F YG + V+ K +GFV
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFV 338
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 99 (39.9 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 32/94 (34%), Positives = 43/94 (45%)
Query: 28 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------- 79
P++ AAT + T + V L N E R LF G + C +VR+
Sbjct: 34 PMQTGAAT-----DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 80 YGFV-HIDSPDINKCIKELNGMMVDGKPMKVVVA 112
YGFV +ID D K I LNG+ + K +KV A
Sbjct: 89 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 64 (27.6 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG + G + IF+ N++P + ++ LF +G V V++++
Sbjct: 288 NIPGHTGTG-WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 332
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 99 (39.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 32/94 (34%), Positives = 43/94 (45%)
Query: 28 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------- 79
P++ AAT + T + V L N E R LF G + C +VR+
Sbjct: 50 PMQTGAAT-----DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 104
Query: 80 YGFV-HIDSPDINKCIKELNGMMVDGKPMKVVVA 112
YGFV +ID D K I LNG+ + K +KV A
Sbjct: 105 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 138
Score = 64 (27.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG + G + IF+ N++P + ++ LF +G V V++++
Sbjct: 290 NIPGHTGTG-WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 334
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 99 (39.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 32/94 (34%), Positives = 43/94 (45%)
Query: 28 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------- 79
P++ AAT + T + V L N E R LF G + C +VR+
Sbjct: 38 PMQTGAAT-----DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 92
Query: 80 YGFV-HIDSPDINKCIKELNGMMVDGKPMKVVVA 112
YGFV +ID D K I LNG+ + K +KV A
Sbjct: 93 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 126
Score = 64 (27.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG + G + IF+ N++P + ++ LF +G V V++++
Sbjct: 292 NIPGHTGTG-WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 336
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 33/120 (27%), Positives = 58/120 (48%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK G T V++ N +
Sbjct: 73 HFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 132
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+RELF +G + ++R+ +GFV + D NK ++E+NG + GK + V
Sbjct: 133 DENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 192
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 99 (39.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 32/94 (34%), Positives = 43/94 (45%)
Query: 28 PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------- 79
P++ AAT + T + V L N E R LF G + C +VR+
Sbjct: 39 PMQTGAAT-----DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 93
Query: 80 YGFV-HIDSPDINKCIKELNGMMVDGKPMKVVVA 112
YGFV +ID D K I LNG+ + K +KV A
Sbjct: 94 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127
Score = 64 (27.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG + G + IF+ N++P + ++ LF +G V V++++
Sbjct: 293 NIPGHTGTG-WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 337
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 120 (47.3 bits), Expect = 0.00012, P = 0.00012
Identities = 36/123 (29%), Positives = 63/123 (51%)
Query: 6 MENDEEGRTAIKELNGQIVNEKPLKIEAATSR-----KGPNT--PTTKVFVGNLSDNTRA 58
M + +E TA+++ N +N + L + A R + P P +V+VGNL +
Sbjct: 198 MSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDN 257
Query: 59 PEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMKV 109
+ +LF +G VVE +V R +GFV + D ++N+ I L+G ++G+ ++V
Sbjct: 258 GRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
Query: 110 VVA 112
VA
Sbjct: 318 NVA 320
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 124 (48.7 bits), Expect = 0.00012, P = 0.00012
Identities = 33/120 (27%), Positives = 58/120 (48%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK G T V++ N +
Sbjct: 144 HFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+RELF +G + ++R+ +GFV + D NK ++E+NG + GK + V
Sbjct: 204 DENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 263
Score = 113 (44.8 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 30/122 (24%), Positives = 62/122 (50%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ + + A+ +N ++ KP++I S++ P+ + VF+ NL + +
Sbjct: 58 NFQQPADAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAL 115
Query: 62 RELFVPYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVVVAGF 114
+ F +G ++ C +V + Y FVH ++ + NK I+++NGM+++ + KV V F
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDR--KVFVGRF 173
Query: 115 IS 116
S
Sbjct: 174 KS 175
Score = 47 (21.6 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN 342
++I N E +R LF ++GK + V+++
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD 225
>DICTYBASE|DDB_G0284167 [details] [associations]
symbol:DDB_G0284167 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0284167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000063 eggNOG:COG0724 RefSeq:XP_638767.1
ProteinModelPortal:Q54Q30 STRING:Q54Q30 EnsemblProtists:DDB0233340
GeneID:8624438 KEGG:ddi:DDB_G0284167 InParanoid:Q54Q30 OMA:DASANNE
Uniprot:Q54Q30
Length = 293
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN------YGFVHI-DSPDINK 92
P TP ++FVGNL++N + + F +G V+ I++ +GFV + D NK
Sbjct: 12 PTTPAHRIFVGNLTENVESSTLETAFAEFGKVLSVRIIKKKFKSNTFGFVDMEDLETANK 71
Query: 93 CIKELNGMMVDGKPMKVVVA 112
+ +NG DGK + V +A
Sbjct: 72 AVAAINGREFDGKQVNVEIA 91
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 118 (46.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 30/122 (24%), Positives = 65/122 (53%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ ++ ++ A+ +N ++ KP++I S++ P+ + +FV NL + +
Sbjct: 58 NFQHTKDAEHALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDKSINNKAL 115
Query: 62 RELFVPYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVVVAGF 114
+ +G ++ C++V + YGFVH ++ + + IK++NGM+++G+ KV V F
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR--KVFVGQF 173
Query: 115 IS 116
S
Sbjct: 174 KS 175
Score = 41 (19.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFV 346
++I N E ++ LF K+G + V+ K +GFV
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFV 236
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
Identities = 33/120 (27%), Positives = 58/120 (48%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK G T V++ N +
Sbjct: 144 HFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
+RELF +G + ++R+ +GFV + D NK ++E+NG + GK + V
Sbjct: 204 DENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 263
Score = 113 (44.8 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 30/122 (24%), Positives = 62/122 (50%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ + + A+ +N ++ KP++I S++ P+ + VF+ NL + +
Sbjct: 58 NFQQPADAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAL 115
Query: 62 RELFVPYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVVVAGF 114
+ F +G ++ C +V + Y FVH ++ + NK I+++NGM+++ + KV V F
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDR--KVFVGRF 173
Query: 115 IS 116
S
Sbjct: 174 KS 175
Score = 47 (21.6 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN 342
++I N E +R LF ++GK + V+++
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD 225
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 98 (39.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 28/77 (36%), Positives = 36/77 (46%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKCIK 95
T + V L N E R LF G + C +VR+ YGFV +ID D K I
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 96 ELNGMMVDGKPMKVVVA 112
LNG+ + K +KV A
Sbjct: 111 TLNGLRLQTKTIKVSYA 127
Score = 64 (27.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG + G + IF+ N++P + ++ LF +G V V++++
Sbjct: 279 NIPGHTGTG-WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 323
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 98 (39.6 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 28/77 (36%), Positives = 36/77 (46%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKCIK 95
T + V L N E R LF G + C +VR+ YGFV +ID D K I
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 96 ELNGMMVDGKPMKVVVA 112
LNG+ + K +KV A
Sbjct: 106 TLNGLRLQTKTIKVSYA 122
Score = 64 (27.6 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG + G + IF+ N++P + ++ LF +G V V++++
Sbjct: 288 NIPGHTGTG-WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 332
>UNIPROTKB|Q5ZLF9 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 OrthoDB:EOG4RJG2V EMBL:AADN02003156
EMBL:AJ719775 IPI:IPI00651527 UniGene:Gga.4502 STRING:Q5ZLF9
Ensembl:ENSGALT00000032618 Uniprot:Q5ZLF9
Length = 123
Score = 99 (39.9 bits), Expect = 0.00014, P = 0.00014
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNG 99
+VF+G L+ R +V F YG + + D+ R +GFV + P D + + EL+G
Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDG 59
>UNIPROTKB|B4DJK0 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AL157789
UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5 EMBL:AL355837
EMBL:AK296113 IPI:IPI01025047 ProteinModelPortal:B4DJK0 SMR:B4DJK0
STRING:B4DJK0 Ensembl:ENST00000555349 ArrayExpress:B4DJK0
Bgee:B4DJK0 Uniprot:B4DJK0
Length = 124
Score = 99 (39.9 bits), Expect = 0.00014, P = 0.00014
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNG 99
+VF+G L+ R +V F YG + + D+ R +GFV + P D + + EL+G
Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDG 59
>UNIPROTKB|G3V5K8 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0051726 "regulation
of cell cycle" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0051726 EMBL:AL157789 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 ProteinModelPortal:G3V5K8 SMR:G3V5K8
Ensembl:ENST00000553548 ArrayExpress:G3V5K8 Bgee:G3V5K8
Uniprot:G3V5K8
Length = 99
Score = 99 (39.9 bits), Expect = 0.00014, P = 0.00014
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNG 99
+VF+G L+ R +V F YG + + D+ R +GFV + P D + + EL+G
Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDG 59
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 98 (39.6 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 28/77 (36%), Positives = 36/77 (46%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKCIK 95
T + V L N E R LF G + C +VR+ YGFV +ID D K I
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 96 ELNGMMVDGKPMKVVVA 112
LNG+ + K +KV A
Sbjct: 111 TLNGLRLQTKTIKVSYA 127
Score = 64 (27.6 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG + G + IF+ N++P + ++ LF +G V V++++
Sbjct: 293 NIPGHTGTG-WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 337
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 91 (37.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 35/120 (29%), Positives = 58/120 (48%)
Query: 7 ENDEE---GRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRE 63
END+ G + NG + KI+A+ + + K+FVG LS +T ++++
Sbjct: 17 ENDDGEGFGEEQMSGDNGGQGEAEGSKIDASKNEEDEG----KMFVGGLSWDTTKKDLKD 72
Query: 64 LFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCI--KE--LNGMMVDGKPMKVV 110
F +G VV+C + R +GFV ++ + K I KE LNG ++D K K +
Sbjct: 73 YFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQKEHKLNGKVIDPKKAKAM 132
Score = 69 (29.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKV 334
KIF+G ++P T E IR F+ YG+V
Sbjct: 140 KIFVGGLSPDTPEEKIREYFDAYGEV 165
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 123 (48.4 bits), Expect = 0.00016, P = 0.00016
Identities = 33/120 (27%), Positives = 59/120 (49%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTR 57
H E + AI+++NG ++N++ + + SRK G T V++ N D+
Sbjct: 145 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMD 204
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++ELF YG + ++ R +GFV + D NK ++E+NG ++GK + V
Sbjct: 205 DQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFV 264
Score = 110 (43.8 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 30/122 (24%), Positives = 62/122 (50%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ + + A+ +N +V KP++I S++ P+ + VF+ NL + +
Sbjct: 59 NFQQPADAERALDTMNFDVVKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAL 116
Query: 62 RELFVPYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVVVAGF 114
+ F +G ++ C +V + Y FVH ++ D ++ I+++NGM+++ + KV V F
Sbjct: 117 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR--KVFVGRF 174
Query: 115 IS 116
S
Sbjct: 175 KS 176
Score = 49 (22.3 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV 340
++I N + ++ LF+KYGK + V+
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVM 224
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 96 (38.9 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 25 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------- 77
N P EAAT+++ K+F+G LS +T ++++ F +G VV+C +
Sbjct: 14 NSSPRHSEAATAQR----EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 69
Query: 78 -RNYGFVHI-DSPDINKCI--KE--LNGMMVDGKPMKVV 110
R +GFV +S ++K + KE LNG ++D K K +
Sbjct: 70 SRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAM 108
Score = 60 (26.2 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKV 334
KIF+G ++P T E IR F +G+V
Sbjct: 116 KIFVGGLSPDTPEEKIREYFGGFGEV 141
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 115 (45.5 bits), Expect = 0.00017, P = 0.00017
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKCIKE 96
K+F+G LS +T + E F YGT+ + D++R+ +GFV ++P D +
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 97 LNGMMVDGKPMKVVVAG 113
+NG VDG+ ++V AG
Sbjct: 84 MNGKQVDGRMIRVDEAG 100
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 118 (46.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 29/120 (24%), Positives = 61/120 (50%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-PNTPTTKVFVGNLSDNTRAPEVRE 63
+ + + A+ +N +++ +P++I + G + VF+ NL ++ + +
Sbjct: 58 NFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYD 117
Query: 64 LFVPYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C +V R YGFVH ++ + N+ I+ +NGM+++ + KV V F S
Sbjct: 118 TFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDR--KVFVGHFKS 175
Score = 47 (21.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFV 346
+++ N++ G + +R F YG + V+ K +GFV
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFV 338
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 98 (39.6 bits), Expect = 0.00018, P = 0.00018
Identities = 26/110 (23%), Positives = 51/110 (46%)
Query: 11 EGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK---VFVGNLSDNTRAPEVRELFVP 67
+ A+ +NG+ + K +K+ AT+ T+ VFVG+LS +++ F P
Sbjct: 21 DAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAP 80
Query: 68 YGTVVECDIVRN--------YGFVHI-DSPDINKCIKELNGMMVDGKPMK 108
+G + + +V++ YGFV + D I + G + G+ ++
Sbjct: 81 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 130
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 113 (44.8 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 30/91 (32%), Positives = 43/91 (47%)
Query: 34 ATSRKGPNT---PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGF 82
AT+ N P T + V L E+R LFV +G V C ++R+ YGF
Sbjct: 96 ATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGF 155
Query: 83 V-HIDSPDINKCIKELNGMMVDGKPMKVVVA 112
V ++ D K I LNG+ + K +KV +A
Sbjct: 156 VNYVKQEDAEKAINALNGLRLQNKTIKVSIA 186
Score = 48 (22.0 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN 342
IF+ N+ P T ++ LF +G V V+++
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRD 395
Score = 43 (20.2 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 290 TVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVV 335
T+ V AR P S+ +++ + + + LF YGK++
Sbjct: 180 TIKVSIAR--PSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKII 223
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 121 (47.7 bits), Expect = 0.00028, P = 0.00028
Identities = 32/95 (33%), Positives = 52/95 (54%)
Query: 26 EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN------ 79
E+ LK EAA +G N ++V NL ++ ++RE F P+GT+ C ++R+
Sbjct: 314 EQSLK-EAADKSQGSN-----LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSR 367
Query: 80 -YGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
GFV +P+ + I E+NG M+ KP+ V +A
Sbjct: 368 GSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Score = 120 (47.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 33/112 (29%), Positives = 54/112 (48%)
Query: 7 ENDEEGRTAIKELNGQIVNEK-----PLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEV 61
+ DE + AI +LNG ++N+K P + G T V+V NLS++ E+
Sbjct: 181 DTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEEL 240
Query: 62 RELFVPYGTVVECDIVRN-------YGFVHID-SPDINKCIKELNGMMVDGK 105
++F +G C I+R+ +GFV+ + S D + + LNG D K
Sbjct: 241 NKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDK 292
Score = 45 (20.9 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 6/33 (18%), Positives = 19/33 (57%)
Query: 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN 342
+++ N++ + + +R F +G + C V+++
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRD 361
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 122 (48.0 bits), Expect = 0.00020, P = 0.00020
Identities = 31/116 (26%), Positives = 57/116 (49%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTR 57
H E + AI+++NG ++N++ + + SRK G T V++ N D+
Sbjct: 144 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMD 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF YG + ++ + +GFV + D NK ++E+NG ++GK
Sbjct: 204 DERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGK 259
Score = 109 (43.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 29/122 (23%), Positives = 62/122 (50%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ + + A+ +N ++ KP++I S++ P+ + VF+ NL + +
Sbjct: 58 NFQQPADAERALDTMNFDVIKGKPIRI--MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAL 115
Query: 62 RELFVPYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVVVAGF 114
+ F +G ++ C +V + Y FVH ++ D ++ I+++NGM+++ + KV V F
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR--KVFVGRF 173
Query: 115 IS 116
S
Sbjct: 174 KS 175
Score = 53 (23.7 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFV 346
++I N E ++ LF KYGK + V+ K +GFV
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFV 236
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 93 (37.8 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS-PDINKCIKE 96
K+FVGNL N + ++ +LF G V +++ R +GFV + S ++ ++
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 97 LNGMMVDGKPMKV 109
NG +DG+P++V
Sbjct: 152 FNGYELDGRPLRV 164
Score = 64 (27.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 301 GFSSVGTF-KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346
G S G+ ++++GN++ G + LF + GKVVE V+ K +GFV
Sbjct: 196 GGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFV 250
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 97 (39.2 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 25 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------- 77
N P EAAT+++ K+F+G LS +T ++++ F +G VV+C +
Sbjct: 79 NSSPRHTEAATAQR----EEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGR 134
Query: 78 -RNYGFVHI-DSPDINKCI--KE--LNGMMVDGKPMKVV 110
R +GFV +S ++K + KE LNG ++D K K +
Sbjct: 135 SRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAM 173
Score = 60 (26.2 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKV 334
KIF+G ++P T E IR F +G+V
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEV 206
>UNIPROTKB|F6T1J1 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich-splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AL357500 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL590729 HGNC:HGNC:10786 ChiTaRS:SRSF4
IPI:IPI00908618 ProteinModelPortal:F6T1J1 SMR:F6T1J1
Ensembl:ENST00000546138 UCSC:uc010ofy.2 ArrayExpress:F6T1J1
Bgee:F6T1J1 Uniprot:F6T1J1
Length = 158
Score = 107 (42.7 bits), Expect = 0.00022, P = 0.00022
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDS-PDINKCIKELNGMMVDG 104
+V++G LS R +V F YG ++E D+ YGFV D D + + ELNG + G
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62
Query: 105 KPMKVVV 111
+ +V+V
Sbjct: 63 E--RVIV 67
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 99 (39.9 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 34/108 (31%), Positives = 48/108 (44%)
Query: 20 NGQIVNEK---PLKIEAATSRKGPNTPTTK--VFVGNLSDNTRAPEVRELFVPYGTVVEC 74
NG N P I ++ + NT +K + V L N E++ LF G + C
Sbjct: 36 NGPTCNNTANCPNTINCSSPVESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESC 95
Query: 75 DIVRN---------YGFV-HIDSPDINKCIKELNGMMVDGKPMKVVVA 112
+VR+ YGFV +ID D K I LNG+ + K +KV A
Sbjct: 96 KLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 143
Score = 61 (26.5 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N PG + G + IF+ N+ P ++ +F +G V V++++
Sbjct: 297 NFPGHAGTG-WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDF 341
>UNIPROTKB|G3V251 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V251 SMR:G3V251 Ensembl:ENST00000554891
ArrayExpress:G3V251 Bgee:G3V251 Uniprot:G3V251
Length = 126
Score = 97 (39.2 bits), Expect = 0.00023, P = 0.00023
Identities = 19/80 (23%), Positives = 44/80 (55%)
Query: 35 TSRKGPNTPTTKVFVGNLSDNT-RAPEVRELFVPYGTVVECDIVRNYGFV-HIDSPDINK 92
T++ P + ++VF+GNL+ + +V +F YG +V C + + + FV +++ +
Sbjct: 6 TNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARA 65
Query: 93 CIKELNGMMVDGKPMKVVVA 112
+ +G M+ G+ + + +A
Sbjct: 66 AVAGEDGRMIAGQVLDINLA 85
>UNIPROTKB|G3V3K6 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V3K6 SMR:G3V3K6 Ensembl:ENST00000556226
ArrayExpress:G3V3K6 Bgee:G3V3K6 Uniprot:G3V3K6
Length = 121
Score = 97 (39.2 bits), Expect = 0.00023, P = 0.00023
Identities = 19/80 (23%), Positives = 44/80 (55%)
Query: 35 TSRKGPNTPTTKVFVGNLSDNT-RAPEVRELFVPYGTVVECDIVRNYGFV-HIDSPDINK 92
T++ P + ++VF+GNL+ + +V +F YG +V C + + + FV +++ +
Sbjct: 6 TNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARA 65
Query: 93 CIKELNGMMVDGKPMKVVVA 112
+ +G M+ G+ + + +A
Sbjct: 66 AVAGEDGRMIAGQVLDINLA 85
>UNIPROTKB|G3V5X6 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V5X6 SMR:G3V5X6 Ensembl:ENST00000555176
ArrayExpress:G3V5X6 Bgee:G3V5X6 Uniprot:G3V5X6
Length = 117
Score = 97 (39.2 bits), Expect = 0.00023, P = 0.00023
Identities = 19/80 (23%), Positives = 44/80 (55%)
Query: 35 TSRKGPNTPTTKVFVGNLSDNT-RAPEVRELFVPYGTVVECDIVRNYGFV-HIDSPDINK 92
T++ P + ++VF+GNL+ + +V +F YG +V C + + + FV +++ +
Sbjct: 6 TNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARA 65
Query: 93 CIKELNGMMVDGKPMKVVVA 112
+ +G M+ G+ + + +A
Sbjct: 66 AVAGEDGRMIAGQVLDINLA 85
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 31/116 (26%), Positives = 56/116 (48%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK G T V++ N +
Sbjct: 46 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 105
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 106 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 161
>UNIPROTKB|F1PTE0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431
OMA:KPRSSHR EMBL:AAEX03013949 RefSeq:XP_003639908.1
Ensembl:ENSCAFT00000014759 GeneID:403667 KEGG:cfa:403667
Uniprot:F1PTE0
Length = 344
Score = 117 (46.2 bits), Expect = 0.00028, P = 0.00028
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
+V++G LS N R +++ F YG ++E D+ YGFV DS D + + ELNG + G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 105 KPMKVVV 111
+ +V+V
Sbjct: 63 E--RVIV 67
>UNIPROTKB|Q13247 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471077 GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295 EMBL:AL031681
KO:K12893 ChiTaRS:SRSF6 OrthoDB:EOG41C6X9 CTD:6431 EMBL:U30883
EMBL:U30828 EMBL:U30829 EMBL:AK300411 EMBL:BC006832 IPI:IPI00012345
IPI:IPI00018203 IPI:IPI00215879 PIR:S59043 RefSeq:NP_006266.2
UniGene:Hs.6891 ProteinModelPortal:Q13247 SMR:Q13247 IntAct:Q13247
MINT:MINT-1474667 STRING:Q13247 PhosphoSite:Q13247 DMDM:20981728
PaxDb:Q13247 PRIDE:Q13247 DNASU:6431 Ensembl:ENST00000244020
Ensembl:ENST00000483871 GeneID:6431 KEGG:hsa:6431 UCSC:uc002xki.3
GeneCards:GC20P042087 HGNC:HGNC:10788 HPA:CAB034889 HPA:HPA029005
MIM:601944 neXtProt:NX_Q13247 PharmGKB:PA35704 InParanoid:Q13247
OMA:KPRSSHR PhylomeDB:Q13247 GenomeRNAi:6431 NextBio:24979
Bgee:Q13247 CleanEx:HS_SFRS6 Genevestigator:Q13247
GermOnline:ENSG00000124193 Uniprot:Q13247
Length = 344
Score = 117 (46.2 bits), Expect = 0.00028, P = 0.00028
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
+V++G LS N R +++ F YG ++E D+ YGFV DS D + + ELNG + G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 105 KPMKVVV 111
+ +V+V
Sbjct: 63 E--RVIV 67
>UNIPROTKB|F1MXY9 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich-splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 IPI:IPI00687852
UniGene:Bt.38355 OMA:KPRSSHR EMBL:DAAA02036693
ProteinModelPortal:F1MXY9 Ensembl:ENSBTAT00000011240 Uniprot:F1MXY9
Length = 345
Score = 117 (46.2 bits), Expect = 0.00028, P = 0.00028
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
+V++G LS N R +++ F YG ++E D+ YGFV DS D + + ELNG + G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 105 KPMKVVV 111
+ +V+V
Sbjct: 63 E--RVIV 67
>UNIPROTKB|Q06AA0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6431 OMA:KPRSSHR EMBL:CU407126 EMBL:DQ972964
RefSeq:NP_001070685.1 UniGene:Ssc.9241 Ensembl:ENSSSCT00000008057
GeneID:768102 KEGG:ssc:768102 Uniprot:Q06AA0
Length = 345
Score = 117 (46.2 bits), Expect = 0.00028, P = 0.00028
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI-DSPDINKCIKELNGMMVDG 104
+V++G LS N R +++ F YG ++E D+ YGFV DS D + + ELNG + G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 105 KPMKVVV 111
+ +V+V
Sbjct: 63 E--RVIV 67
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 96 (38.9 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 25 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------- 77
N P EAAT+++ K+F+G LS +T ++++ F +G VV+C +
Sbjct: 81 NSSPRHSEAATAQR----EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 136
Query: 78 -RNYGFVHI-DSPDINKCI--KE--LNGMMVDGKPMKVV 110
R +GFV +S ++K + KE LNG ++D K K +
Sbjct: 137 SRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAM 175
Score = 60 (26.2 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKV 334
KIF+G ++P T E IR F +G+V
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEV 208
>UNIPROTKB|Q5QPM2 [details] [associations]
symbol:RALY "RNA-binding protein Raly" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL031668
UniGene:Hs.136947 HGNC:HGNC:15921 ChiTaRS:RALY EMBL:AL034549
IPI:IPI00640938 SMR:Q5QPM2 MINT:MINT-1399328 STRING:Q5QPM2
Ensembl:ENST00000413297 Uniprot:Q5QPM2
Length = 89
Score = 96 (38.9 bits), Expect = 0.00029, P = 0.00029
Identities = 22/85 (25%), Positives = 44/85 (51%)
Query: 29 LKIEAA--TSRKGPNTPTTKVFVGNLSDN-TRAPEVRELFVPYGTVVECDIVRNYGFVHI 85
LK++A+ T++ P + ++VF+GNL+ + +V +F YG V C + + Y FV
Sbjct: 3 LKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQY 62
Query: 86 DSP-DINKCIKELNGMMVDGKPMKV 109
+ + NG ++ G+ + +
Sbjct: 63 SNERHARAAVLGENGRVLAGQTLDI 87
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 120 (47.3 bits), Expect = 0.00032, P = 0.00032
Identities = 31/116 (26%), Positives = 56/116 (48%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK G T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 120 (47.3 bits), Expect = 0.00033, P = 0.00033
Identities = 31/116 (26%), Positives = 56/116 (48%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK G T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 120 (47.3 bits), Expect = 0.00033, P = 0.00033
Identities = 31/116 (26%), Positives = 56/116 (48%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK G T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 97 (39.2 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 27/77 (35%), Positives = 37/77 (48%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKCIK 95
T + V L N E++ LF G + C +VR+ YGFV +ID D K I
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 96 ELNGMMVDGKPMKVVVA 112
LNG+ + K +KV A
Sbjct: 99 TLNGLRLQTKTIKVSYA 115
Score = 60 (26.2 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG G + IF+ N+ P ++ +F +G V V++++
Sbjct: 254 NIPGHPGTG-WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDF 298
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 120 (47.3 bits), Expect = 0.00034, P = 0.00034
Identities = 31/116 (26%), Positives = 56/116 (48%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK G T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 97 (39.2 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 25 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------- 77
N P EAAT+++ K+F+G LS +T ++++ F +G VV+C +
Sbjct: 79 NSSPRHTEAATAQR----EEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGR 134
Query: 78 -RNYGFVHI-DSPDINKCI--KE--LNGMMVDGKPMKVV 110
R +GFV +S ++K + KE LNG ++D K K +
Sbjct: 135 SRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAM 173
Score = 60 (26.2 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKV 334
KIF+G ++P T E IR F +G+V
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEV 206
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 97 (39.2 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 25 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------- 77
N P EAAT+++ K+F+G LS +T ++++ F +G VV+C +
Sbjct: 79 NSSPRHTEAATAQR----EEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGR 134
Query: 78 -RNYGFVHI-DSPDINKCI--KE--LNGMMVDGKPMKVV 110
R +GFV +S ++K + KE LNG ++D K K +
Sbjct: 135 SRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAM 173
Score = 60 (26.2 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKV 334
KIF+G ++P T E IR F +G+V
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEV 206
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 97 (39.2 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 27/77 (35%), Positives = 37/77 (48%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKCIK 95
T + V L N E++ LF G + C +VR+ YGFV +ID D K I
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 96 ELNGMMVDGKPMKVVVA 112
LNG+ + K +KV A
Sbjct: 99 TLNGLRLQTKTIKVSYA 115
Score = 60 (26.2 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG G + IF+ N+ P ++ +F +G V V++++
Sbjct: 267 NIPGHPGTG-WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDF 311
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 120 (47.3 bits), Expect = 0.00038, P = 0.00038
Identities = 31/116 (26%), Positives = 56/116 (48%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK G T V++ N +
Sbjct: 184 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 243
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 244 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 299
>UNIPROTKB|E2QWT4 [details] [associations]
symbol:E2QWT4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000006718 EMBL:AAEX03015913
Ensembl:ENSCAFT00000039292 OMA:RIAGISM Uniprot:E2QWT4
Length = 98
Score = 95 (38.5 bits), Expect = 0.00038, P = 0.00038
Identities = 18/75 (24%), Positives = 39/75 (52%)
Query: 35 TSRKGPNTPTTKVFVGNLSDN-TRAPEVRELFVPYGTVVECDIVRNYGFV-HIDSPDINK 92
T++ P + ++VF+GNL+ + ++ +F YG +V C + + Y FV ++
Sbjct: 11 TNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARA 70
Query: 93 CIKELNGMMVDGKPM 107
+ N ++ G+P+
Sbjct: 71 AVAGENARIIAGQPL 85
Score = 92 (37.4 bits), Expect = 0.00080, P = 0.00080
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 309 KIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFV 346
++FIGN+N ++ I +F KYGK+V C V K Y FV
Sbjct: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
>UNIPROTKB|E5RG71 [details] [associations]
symbol:RALYL "RNA-binding Raly-like protein" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:27036
ChiTaRS:RALYL EMBL:AC009901 EMBL:AC012400 EMBL:AC027043
EMBL:AC087368 EMBL:AC092699 EMBL:AC092709 EMBL:AC103816
IPI:IPI00981789 SMR:E5RG71 Ensembl:ENST00000517988
Ensembl:ENST00000522613 Uniprot:E5RG71
Length = 85
Score = 95 (38.5 bits), Expect = 0.00038, P = 0.00038
Identities = 18/75 (24%), Positives = 39/75 (52%)
Query: 35 TSRKGPNTPTTKVFVGNLSDN-TRAPEVRELFVPYGTVVECDIVRNYGFV-HIDSPDINK 92
T++ P + ++VF+GNL+ + ++ +F YG +V C + + Y FV ++
Sbjct: 11 TNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARA 70
Query: 93 CIKELNGMMVDGKPM 107
+ N ++ G+P+
Sbjct: 71 AVAGENARVIAGQPL 85
Score = 92 (37.4 bits), Expect = 0.00080, P = 0.00080
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 309 KIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFV 346
++FIGN+N ++ I +F KYGK+V C V K Y FV
Sbjct: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
>UNIPROTKB|I3LRX6 [details] [associations]
symbol:LOC100523119 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000006718 OMA:RIAGISM EMBL:CU179669
EMBL:CU462924 Ensembl:ENSSSCT00000025498 Uniprot:I3LRX6
Length = 98
Score = 95 (38.5 bits), Expect = 0.00038, P = 0.00038
Identities = 18/75 (24%), Positives = 39/75 (52%)
Query: 35 TSRKGPNTPTTKVFVGNLSDN-TRAPEVRELFVPYGTVVECDIVRNYGFV-HIDSPDINK 92
T++ P + ++VF+GNL+ + ++ +F YG +V C + + Y FV ++
Sbjct: 11 TNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARA 70
Query: 93 CIKELNGMMVDGKPM 107
+ N ++ G+P+
Sbjct: 71 AVAGENARIIAGQPL 85
Score = 92 (37.4 bits), Expect = 0.00080, P = 0.00080
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 309 KIFIGNVNPGTSVEL-IRPLFEKYGKVVECDVVKNYGFV 346
++FIGN+N ++ I +F KYGK+V C V K Y FV
Sbjct: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 95 (38.5 bits), Expect = 0.00038, P = 0.00038
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPDINK-CIKE 96
K+FVG LS +T + ++F YG + E +V R +GFV ++ D K +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 97 LNGMMVDGKPMKVVVAG 113
+NG VDG+ ++V AG
Sbjct: 67 MNGKSVDGRQIRVDQAG 83
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 95 (38.5 bits), Expect = 0.00038, P = 0.00038
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKE 96
K+F+G L+ T + +F YG +VE ++ R + FV +SP D ++
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 97 LNGMMVDGKPMKV 109
+NG +DGK +KV
Sbjct: 69 MNGKSLDGKAIKV 81
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 97 (39.2 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 27/77 (35%), Positives = 37/77 (48%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKCIK 95
T + V L N E++ LF G + C +VR+ YGFV +ID D K I
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 96 ELNGMMVDGKPMKVVVA 112
LNG+ + K +KV A
Sbjct: 99 TLNGLRLQTKTIKVSYA 115
Score = 60 (26.2 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG G + IF+ N+ P ++ +F +G V V++++
Sbjct: 268 NIPGHPGTG-WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDF 312
>UNIPROTKB|B4DUA4 [details] [associations]
symbol:SRSF5 "cDNA FLJ57437, highly similar to Splicing
factor, arginine/serine-rich 5" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:AL157789 UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 EMBL:AK300560 IPI:IPI01009006
ProteinModelPortal:B4DUA4 SMR:B4DUA4 STRING:B4DUA4
Ensembl:ENST00000451983 Ensembl:ENST00000553369
Ensembl:ENST00000554021 UCSC:uc021rvj.1 ArrayExpress:B4DUA4
Bgee:B4DUA4 Uniprot:B4DUA4
Length = 138
Score = 99 (39.9 bits), Expect = 0.00042, P = 0.00042
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DINKCIKELNG 99
+VF+G L+ R +V F YG + + D+ R +GFV + P D + + EL+G
Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDG 59
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 119 (46.9 bits), Expect = 0.00044, P = 0.00044
Identities = 31/116 (26%), Positives = 56/116 (48%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTR 57
H E E AI+++NG ++N++ + + SRK G T V++ N +
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 58 APEVRELFVPYGTVVECDIVRN-------YGFVHIDS-PDINKCIKELNGMMVDGK 105
++ELF +G + ++R+ +GFV + D NK ++E+NG + GK
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGK 259
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 117 (46.2 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 29/120 (24%), Positives = 61/120 (50%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-PNTPTTKVFVGNLSDNTRAPEVRE 63
+ + + A+ +N +++ +P++I + G + VF+ NL ++ + +
Sbjct: 58 NFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYD 117
Query: 64 LFVPYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C +V R YGFVH ++ + N+ I+ +NGM+++ + KV V F S
Sbjct: 118 TFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDR--KVFVGHFKS 175
Score = 44 (20.5 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFV 346
+++ N++ G + +R F YG + V+ K +GFV
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFV 338
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 117 (46.2 bits), Expect = 0.00047, P = 0.00047
Identities = 32/114 (28%), Positives = 54/114 (47%)
Query: 8 NDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-PNTPTTK---VFVGNLSDNTRAPEVRE 63
N + TA+ +N ++ EK +K+ ATS P T + +FVG+LS +RE
Sbjct: 54 NYQAATTALTAMNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLRE 113
Query: 64 LFVPYGTVVECDIVRN--------YGFVH-IDSPDINKCIKELNGMMVDGKPMK 108
F P+G + C IVR+ Y FV + + I+ +NG + + ++
Sbjct: 114 AFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIR 167
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 96 (38.9 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 25 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------- 77
N P EAAT+++ K+F+G LS +T ++++ F +G VV+C +
Sbjct: 81 NSSPRHSEAATAQR----EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 136
Query: 78 -RNYGFVHI-DSPDINKCI--KE--LNGMMVDGKPMKVV 110
R +GFV +S ++K + KE LNG ++D K K +
Sbjct: 137 SRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAM 175
Score = 60 (26.2 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKV 334
KIF+G ++P T E IR F +G+V
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEV 208
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 96 (38.9 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 25 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------- 77
N P EAAT+++ K+F+G LS +T ++++ F +G VV+C +
Sbjct: 81 NSSPRHSEAATAQR----EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 136
Query: 78 -RNYGFVHI-DSPDINKCI--KE--LNGMMVDGKPMKVV 110
R +GFV +S ++K + KE LNG ++D K K +
Sbjct: 137 SRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAM 175
Score = 60 (26.2 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKV 334
KIF+G ++P T E IR F +G+V
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEV 208
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 96 (38.9 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 25 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV------- 77
N P EAAT+++ K+F+G LS +T ++++ F +G VV+C +
Sbjct: 81 NSSPRHSEAATAQR----EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 136
Query: 78 -RNYGFVHI-DSPDINKCI--KE--LNGMMVDGKPMKVV 110
R +GFV +S ++K + KE LNG ++D K K +
Sbjct: 137 SRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAM 175
Score = 60 (26.2 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKV 334
KIF+G ++P T E IR F +G+V
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEV 208
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 97 (39.2 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 27/77 (35%), Positives = 37/77 (48%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKCIK 95
T + V L N E++ LF G + C +VR+ YGFV +ID D K I
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 96 ELNGMMVDGKPMKVVVA 112
LNG+ + K +KV A
Sbjct: 127 TLNGLRLQTKTIKVSYA 143
Score = 60 (26.2 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG G + IF+ N+ P ++ +F +G V V++++
Sbjct: 295 NIPGHPGTG-WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDF 339
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 118 (46.6 bits), Expect = 0.00047, P = 0.00047
Identities = 33/115 (28%), Positives = 55/115 (47%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPT----TKVFVGNLSDNTRAPE 60
H E E AI ++NG ++N + + + S K PT T VF NLS++ +
Sbjct: 144 HYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQ 203
Query: 61 VRELFVPYGTVVECDIV-------RNYGFVHIDSPDINKCIKEL-NGMMVDGKPM 107
++EL YG + I+ + +GF + +S + K + E NG + GKP+
Sbjct: 204 LKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPI 258
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 97 (39.2 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 27/77 (35%), Positives = 37/77 (48%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKCIK 95
T + V L N E++ LF G + C +VR+ YGFV +ID D K I
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 96 ELNGMMVDGKPMKVVVA 112
LNG+ + K +KV A
Sbjct: 128 TLNGLRLQTKTIKVSYA 144
Score = 60 (26.2 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG G + IF+ N+ P ++ +F +G V V++++
Sbjct: 297 NIPGHPGTG-WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDF 341
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 97 (39.2 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 27/77 (35%), Positives = 37/77 (48%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKCIK 95
T + V L N E++ LF G + C +VR+ YGFV +ID D K I
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 96 ELNGMMVDGKPMKVVVA 112
LNG+ + K +KV A
Sbjct: 128 TLNGLRLQTKTIKVSYA 144
Score = 60 (26.2 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG G + IF+ N+ P ++ +F +G V V++++
Sbjct: 296 NIPGHPGTG-WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDF 340
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 118 (46.6 bits), Expect = 0.00055, P = 0.00055
Identities = 32/120 (26%), Positives = 56/120 (46%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK------GPNTPT-TKVFVGNLSDNTR 57
H E E AI ++NG ++N++ + + SRK G T V++ N D+
Sbjct: 144 HFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMN 203
Query: 58 APEVRELFVPYGTVVECDIV-------RNYGFVHIDS-PDINKCIKELNGMMVDGKPMKV 109
++E+F YG + ++ + +GFV + D K + E+NG ++GK M V
Sbjct: 204 DERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV 263
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 110 (43.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 28/120 (23%), Positives = 60/120 (50%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG-PNTPTTKVFVGNLSDNTRAPEVRE 63
+ + + A+ +N +++ +P++I + G + VF+ NL D+ + +
Sbjct: 58 NFQQPADAERALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYD 117
Query: 64 LFVPYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVVVAGFIS 116
F +G ++ C +V R +GFVH ++ + + I+ +NGM+++ + KV V F S
Sbjct: 118 TFSAFGNILSCKVVCDENGSRGHGFVHFETQEAATRAIQTMNGMLLNDR--KVFVGHFKS 175
Score = 50 (22.7 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV------KNYGFV 346
+++ N++ G E +R F YG + V+ K +GFV
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFV 338
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 117 (46.2 bits), Expect = 0.00069, P = 0.00069
Identities = 34/115 (29%), Positives = 57/115 (49%)
Query: 17 KELNGQIVN----EKPLKIEAATSRKGPNTPTTKV--------FVGNLSDNTRAPEVREL 64
KELNG+++ +K L+ + RK ++ +V NL D+ ++R+
Sbjct: 254 KELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKE 313
Query: 65 FVPYGTVVECDIV------RNYGFVHIDSPD-INKCIKELNGMMVDGKPMKVVVA 112
F PYGT+ ++ R +GFV SP+ K + E+NG +V KP+ V +A
Sbjct: 314 FAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 118 (46.6 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 30/122 (24%), Positives = 65/122 (53%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTT---KVFVGNLSDNTRAPEV 61
+ ++ ++ A+ +N ++ KP++I S++ P+ + +FV NL + +
Sbjct: 58 NFQHTKDAEHALDTMNFDVIKGKPVRI--MWSQRDPSLRKSGVGNIFVKNLDKSINNKAL 115
Query: 62 RELFVPYGTVVECDIV------RNYGFVHIDSPDI-NKCIKELNGMMVDGKPMKVVVAGF 114
+ +G ++ C++V + YGFVH ++ + + IK++NGM+++G+ KV V F
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR--KVFVGQF 173
Query: 115 IS 116
S
Sbjct: 174 KS 175
Score = 41 (19.5 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV-------KNYGFV 346
++I N E ++ LF K+G + V+ K +GFV
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFV 236
>DICTYBASE|DDB_G0293252 [details] [associations]
symbol:DDB_G0293252 "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0293252 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AAFI02000200 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG314315 RefSeq:XP_629218.1
ProteinModelPortal:Q54C48 GeneID:8629100 KEGG:ddi:DDB_G0293252
InParanoid:Q54C48 OMA:FGKVENA Uniprot:Q54C48
Length = 691
Score = 90 (36.7 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 39 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIK--- 95
G PT V+ GN++ + EVR LF +G + I+ N I D+N I+
Sbjct: 171 GQLEPTKIVWAGNINPESTEEEVRHLFSQFGYLQAIKIIPNKQCAFITFADVNCAIQAQF 230
Query: 96 ELNGMMVDGKPMKV 109
LNG + G P+K+
Sbjct: 231 NLNGTIFRGLPLKL 244
Score = 72 (30.4 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKV 334
N P T +++GNVN S EL++ +F+++G V
Sbjct: 266 NKPHQEETPTKNLWLGNVNSNVSYELLKQIFDQFGNV 302
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 94 (38.1 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 29/83 (34%), Positives = 40/83 (48%)
Query: 41 NTPTTKV-FVGN-LSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPD 89
NT +K + N L N E++ LF G + C +VR+ YGFV +ID D
Sbjct: 33 NTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 90 INKCIKELNGMMVDGKPMKVVVA 112
K I LNG+ + K +KV A
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYA 115
Score = 60 (26.2 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG G + IF+ N+ P ++ +F +G V V++++
Sbjct: 267 NIPGHPGTG-WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDF 311
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 94 (38.1 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 29/83 (34%), Positives = 40/83 (48%)
Query: 41 NTPTTKV-FVGN-LSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPD 89
NT +K + N L N E++ LF G + C +VR+ YGFV +ID D
Sbjct: 33 NTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 90 INKCIKELNGMMVDGKPMKVVVA 112
K I LNG+ + K +KV A
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYA 115
Score = 60 (26.2 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 298 NMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
N+PG G + IF+ N+ P ++ +F +G V V++++
Sbjct: 267 NIPGHPGTG-WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDF 311
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 114 (45.2 bits), Expect = 0.00083, P = 0.00083
Identities = 32/124 (25%), Positives = 59/124 (47%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG------------PNTPTTKVFVGNLSD 54
EN AI+E+ G+ ++ +P+ + +TS+ P+ P+ +F+GNLS
Sbjct: 217 ENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSF 276
Query: 55 NTRAPEVRELFVPYGTVV--------ECDIVRNYGFVHIDS-PDINKCIKELNGMMVDGK 105
N + ELF +G VV E + + +G+V + D K + L G +D +
Sbjct: 277 NADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNR 336
Query: 106 PMKV 109
P+++
Sbjct: 337 PVRL 340
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 97 (39.2 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 27/77 (35%), Positives = 37/77 (48%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFV-HIDSPDINKCIK 95
T + V L N E++ LF G + C +VR+ YGFV +ID D K I
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 96 ELNGMMVDGKPMKVVVA 112
LNG+ + K +KV A
Sbjct: 99 TLNGLRLQTKTIKVSYA 115
Score = 45 (20.9 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 10/46 (21%), Positives = 24/46 (52%)
Query: 290 TVVVIEARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVV 335
T+ V AR P +S+ +++ + + + + LF +YG+++
Sbjct: 109 TIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 152
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 97 (39.2 bits), Expect = 0.00092, P = 0.00092
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPD-INKCI 94
++K+FVG LS T +++ F +G V E ++ R +GFV D N I
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 95 KELNGMMVDGKPMKVVVA 112
KE++G ++G+ ++V +A
Sbjct: 94 KEMDGKELNGRQIRVNLA 111
>ZFIN|ZDB-GENE-040426-2452 [details] [associations]
symbol:sfpq "splicing factor proline/glutamine
rich (polypyrimidine tract binding protein associated)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007420 "brain development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2452 GO:GO:0007420 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975 Pfam:PF08075
HOVERGEN:HBG009801 EMBL:AY648751 IPI:IPI00507036 UniGene:Dr.32607
ProteinModelPortal:Q6DRK8 SMR:Q6DRK8 STRING:Q6DRK8 PRIDE:Q6DRK8
InParanoid:Q6DRK8 ArrayExpress:Q6DRK8 Bgee:Q6DRK8 Uniprot:Q6DRK8
Length = 638
Score = 115 (45.5 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 37/115 (32%), Positives = 60/115 (52%)
Query: 20 NGQIVNEKPLKIEAATSRK-GPNTPTTK--VFVGNLSDNTRAPEVRELFVPYGTVVECDI 76
N Q + LK + RK G T T + +F+GNL ++ PE R+LF YG E I
Sbjct: 211 NEQSSQPQELKATLSLLRKPGEKTYTQRCRLFIGNLPNDITEPEFRKLFAKYGEPSEIFI 270
Query: 77 V--RNYGFVHIDSPDINKCIK-ELNGMMVDGKPMKVVVAGFISSILSCLNVIFFI 128
+ +GF+ ++S + + K EL+ + G+P++V A S+ LS N+ F+
Sbjct: 271 NQGKGFGFIRLESRALAEVAKAELDDTPMKGRPLRVRFATH-SAALSVRNLSPFV 324
Score = 43 (20.2 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 312 IGNVNPGTSVELIRPLFEKYGKVVECDVV 340
+ N++P S EL+ F ++G V V+
Sbjct: 317 VRNLSPFVSNELLEEAFSQFGLVERAIVI 345
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 89 (36.4 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 28/120 (23%), Positives = 56/120 (46%)
Query: 4 GHMENDEEGRT--AIKELNGQIVNEKPLKIEAATSRKGPNTPTTK----VFVGNLSDNTR 57
G +E D+ G A++ LNG+ +++ +++ A N T +FVG+LS+
Sbjct: 135 GFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVN 194
Query: 58 APEVRELFVPYGTVVECDIV--------RNYGFVHI-DSPDINKCIKELNGMMVDGKPMK 108
+ + F +G+V E ++ R YGFV + D K + ++G + + ++
Sbjct: 195 DEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIR 254
Score = 68 (29.0 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 311 FIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGF 345
++GN+ P T+ I PLF+ +G V+E + + GF
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQADRGF 345
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.140 0.438 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 346 329 0.00089 116 3 11 22 0.37 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 151
No. of states in DFA: 612 (65 KB)
Total size of DFA: 241 KB (2130 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.77u 0.07s 24.84t Elapsed: 00:00:04
Total cpu time: 24.80u 0.08s 24.88t Elapsed: 00:00:05
Start: Thu Aug 15 11:19:15 2013 End: Thu Aug 15 11:19:20 2013
WARNINGS ISSUED: 1