RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16419
(346 letters)
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 74.1 bits (182), Expect = 3e-17
Identities = 18/82 (21%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 33 AATSRKGPNTPTTKVFVGNLS-DNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP-DI 90
++ + P + ++VF+GNL+ + +V +F YG +V C + + + FV + +
Sbjct: 4 GSSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNA 63
Query: 91 NKCIKELNGMMVDGKPMKVVVA 112
+ +G M+ G+ + + +A
Sbjct: 64 RAAVAGEDGRMIAGQVLDINLA 85
Score = 43.3 bits (102), Expect = 2e-06
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 309 KIFIGNVNP-GTSVELIRPLFEKYGKVVECDVVKNYGFV 346
++FIGN+N + +F KYGK+V C V K + FV
Sbjct: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFV 55
Score = 35.6 bits (82), Expect = 0.001
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 4 GHMENDEEGRTAIKELNGQIVNEKPLKIEAATS----RKGPNT 42
N+ R A+ +G+++ + L I A R GP++
Sbjct: 55 VQYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRSGPSS 97
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 73.1 bits (179), Expect = 6e-17
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 25 NEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVH 84
N K L+ E ++ P V+ G ++ +R+ F P+G ++E + G+
Sbjct: 1 NTKQLRFEDVVNQSSP--KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSF 58
Query: 85 I---DSPDINKCIKELNGMMVDGKPMKVVVA 112
+ I +NG ++G +K
Sbjct: 59 VRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 89
Score = 38.8 bits (90), Expect = 1e-04
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGF 345
SS ++ G + G + +L+R F +G+++E V G+
Sbjct: 14 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGY 56
Score = 33.4 bits (76), Expect = 0.007
Identities = 6/33 (18%), Positives = 9/33 (27%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 37
E AI +NG + +K
Sbjct: 60 RFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 92
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 62.3 bits (151), Expect = 6e-13
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 38 KGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-----RNYGFVHIDSP-DIN 91
+ P +++ NL A E+ ++F YG + + + R +V + D
Sbjct: 1 RLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAK 60
Query: 92 KCIKELNGMMVDGKPMKVVVA 112
L+G V + + V+
Sbjct: 61 NACDHLSGFNVCNRYLVVLYY 81
Score = 36.1 bits (83), Expect = 0.001
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 9/65 (13%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVREL 64
E+ + + A L+G V + L + + + TK + +++ L
Sbjct: 52 VYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKK---------KEEQLKLL 102
Query: 65 FVPYG 69
YG
Sbjct: 103 KEKYG 107
Score = 33.4 bits (76), Expect = 0.008
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV-----KNYGFV 346
++I N+ + E + +F KYG + + V + +V
Sbjct: 9 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYV 51
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 59.9 bits (145), Expect = 2e-12
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR-------NYGFVHIDSP-DINKCIKEL 97
K+ V NL +++ELF +GT+ + + VH + D K +K+
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 61
Query: 98 NGMMVDGKPMKVVVA 112
NG+ +DG+PM + +
Sbjct: 62 NGVPLDGRPMNIQLV 76
Score = 36.8 bits (85), Expect = 3e-04
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
K+ + N++ G S I+ LF ++G + + V +
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR 36
Score = 36.1 bits (83), Expect = 5e-04
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATS 36
H E + A+K+ NG ++ +P+ I+ TS
Sbjct: 47 HFERKADALKAMKQYNGVPLDGRPMNIQLVTS 78
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 60.0 bits (145), Expect = 2e-12
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 39 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-D 89
G + T ++V NL ++ +F YG++V+ +I+ R FV + +
Sbjct: 1 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 60
Query: 90 INKCIKELNGMMVDG--KPMKVVVA 112
+ I LN ++ +G +P+ V +A
Sbjct: 61 AQEAISALNNVIPEGGSQPLSVRLA 85
Score = 34.9 bits (80), Expect = 0.001
Identities = 8/46 (17%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346
+++ N+ + + + +F KYG +V+ +++ + FV
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFV 53
Score = 28.0 bits (62), Expect = 0.44
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 5 HMENDEEGRTAIKELNGQIVN--EKPLKIEAA 34
EE + AI LN I +PL + A
Sbjct: 54 RYNKREEAQEAISALNNVIPEGGSQPLSVRLA 85
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 60.3 bits (146), Expect = 2e-12
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN---------YGFVHIDSP-DINK 92
T+K+ V N+ E+RELF +G + + + +GFV + D K
Sbjct: 7 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKK 66
Query: 93 CIKEL-NGMMVDGKPMKVVVA 112
L + + G+ + + A
Sbjct: 67 AFNALCHSTHLYGRRLVLEWA 87
Score = 37.2 bits (86), Expect = 3e-04
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 9/47 (19%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN---------YGFV 346
KI + N+ + IR LF +G++ + K +GFV
Sbjct: 10 KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFV 56
Score = 28.0 bits (62), Expect = 0.57
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 5 HMENDEEGRTAIKEL-NGQIVNEKPLKIEAATSRK 38
++ + A L + + + L +E A S
Sbjct: 57 DFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV 91
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 59.5 bits (144), Expect = 3e-12
Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR--------NYGFVHIDSP-DINKCIKE 96
++VG+L + + E F P G ++ + R Y +V+ P D + +
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 97 LNGMMVDGKPMKVVVA 112
+N ++ GKP++++ +
Sbjct: 62 MNFDVIKGKPVRIMWS 77
Score = 37.6 bits (87), Expect = 2e-04
Identities = 5/35 (14%), Positives = 18/35 (51%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
+++G+++P + ++ F G ++ V ++
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDM 36
Score = 32.2 bits (73), Expect = 0.013
Identities = 5/31 (16%), Positives = 15/31 (48%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAAT 35
+ + + A+ +N ++ KP++I +
Sbjct: 48 NFQQPADAERALDTMNFDVIKGKPVRIMWSQ 78
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 59.6 bits (144), Expect = 3e-12
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 42 TPTTKVFVGNLSDNTRAPEVRELFVPYG--TVVECDIVRNYGFVHIDSP-DINKCIKELN 98
T +++FVGNL + E+R+LF YG V + +GF+ +++ EL+
Sbjct: 6 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELD 65
Query: 99 GMMVDGKPMKVVVA 112
M + GK ++V A
Sbjct: 66 NMPLRGKQLRVRFA 79
Score = 34.6 bits (79), Expect = 0.002
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 37
+E A EL+ + K L++ A
Sbjct: 50 RLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 82
Score = 33.8 bits (77), Expect = 0.004
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGF 345
++F+GN+ P + E +R LFEKYGK E + K+ GF
Sbjct: 10 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGF 46
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 58.0 bits (140), Expect = 1e-11
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 93
+ ++VGNLS T ++ ELF G + + + + + FV S D
Sbjct: 6 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENA 65
Query: 94 IKELNGMMVDGKPMKV 109
++ +NG +D + ++
Sbjct: 66 MRYINGTRLDDRIIRT 81
Score = 34.2 bits (78), Expect = 0.004
Identities = 4/34 (11%), Positives = 16/34 (47%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 38
+ + A++ +NG ++++ ++ + K
Sbjct: 55 EYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK 88
Score = 31.8 bits (72), Expect = 0.021
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVEC 337
+++GN++ T+ E I LF K G + +
Sbjct: 9 TLYVGNLSFYTTEEQIYELFSKSGDIKKI 37
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 56.5 bits (136), Expect = 3e-11
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN---------YGFVHIDSPDINKCIK 95
T + V L + E+ LF G + C I+R+ D + IK
Sbjct: 3 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 62
Query: 96 ELNGMMVDGKPMKVVVA 112
LNG+ V K +KV A
Sbjct: 63 VLNGITVRNKRLKVSYA 79
Score = 34.2 bits (78), Expect = 0.003
Identities = 5/35 (14%), Positives = 15/35 (42%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
+ + + + + LF G + C ++++Y
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDY 38
Score = 33.0 bits (75), Expect = 0.008
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAAT 35
+ ++ + + AIK LNG V K LK+ A
Sbjct: 46 YAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 80
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 56.6 bits (136), Expect = 4e-11
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
Query: 48 FVGNLSDNTRAPEVRELFVPYGTVVECDIV-----------RNYGFVHIDSP-DINKCIK 95
F+ NL+ +T ++ +F G + C I +GFV P K +K
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 61
Query: 96 ELNGMMVDGKPMKVVVA 112
+L G VDG ++V ++
Sbjct: 62 QLQGHTVDGHKLEVRIS 78
Score = 34.6 bits (79), Expect = 0.002
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGP 40
+ E+ + A+K+L G V+ L++ + P
Sbjct: 49 EYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKP 84
Score = 33.5 bits (76), Expect = 0.005
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVV 340
+FI N+N T+ E ++ +F K G + C +
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTIS 31
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 55.9 bits (134), Expect = 6e-11
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 36 SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY--------GFVHIDS 87
+R P+ P + V LS T ++RE+F YG + + IV + FV+ ++
Sbjct: 2 NRANPD-PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 60
Query: 88 P-DINKCIKELNGMMVDGKPMKV 109
D + + NGM +DG+ ++V
Sbjct: 61 VDDAKEAKERANGMELDGRRIRV 83
Score = 29.7 bits (66), Expect = 0.11
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
+ + ++ T+ +R +F KYG + + +V +
Sbjct: 11 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ 45
Score = 29.7 bits (66), Expect = 0.13
Identities = 5/27 (18%), Positives = 16/27 (59%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI 31
+ EN ++ + A + NG ++ + +++
Sbjct: 57 YFENVDDAKEAKERANGMELDGRRIRV 83
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 55.5 bits (133), Expect = 1e-10
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 39 GPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDI---NKCIK 95
G PTT+++VG L NT + F +G++ D V+ F +I +
Sbjct: 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACA 71
Query: 96 ELNGMMVDGKPMKVVV 111
++ G + G ++ V
Sbjct: 72 KMRGFPLGGPDRRLRV 87
Score = 30.0 bits (67), Expect = 0.12
Identities = 6/37 (16%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 5 HMENDEEGRTAIKELNGQIVN--EKPLKIEAATSRKG 39
E+ + + A ++ G + ++ L+++ A S
Sbjct: 59 QYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGPS 95
Score = 27.0 bits (59), Expect = 1.3
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGF 345
T ++++G + P TS+ + F+++G + D VK F
Sbjct: 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSF 55
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 55.4 bits (133), Expect = 1e-10
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 32 EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVH 84
++ S G + + V + D E+ YG V E ++ N +V
Sbjct: 15 NSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVK 74
Query: 85 IDSPDIN-KCIKELNGMMVDGKPMKV 109
+ K + +LN +G+P+
Sbjct: 75 FRREEDAEKAVIDLNNRWFNGQPIHA 100
Score = 28.1 bits (62), Expect = 0.54
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 322 ELIRPLFEKYGKVVECDVVKN 342
E+ + EKYG+V E +V N
Sbjct: 42 EVFTEMEEKYGEVEEMNVCDN 62
Score = 26.9 bits (59), Expect = 1.4
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIE 32
+E+ A+ +LN + N +P+ E
Sbjct: 74 KFRREEDAEKAVIDLNNRWFNGQPIHAE 101
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 54.7 bits (131), Expect = 1e-10
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI---DSPDINKCIKELNG-MM 101
K+++GNLS A ++R+LF + ++ G+ + D + I+ L+G +
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVE 62
Query: 102 VDGKPMKV 109
+ GK M+V
Sbjct: 63 LHGKIMEV 70
Score = 37.7 bits (87), Expect = 1e-04
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGF 345
K++IGN++P + + +R LF + V+ G+
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGY 39
Score = 28.9 bits (64), Expect = 0.18
Identities = 7/36 (19%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 4 GHMENDEEGRTAIKELNGQI-VNEKPLKIEAATSRK 38
+ AI+ L+G++ ++ K ++++ + S+K
Sbjct: 42 VDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 77
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 54.7 bits (131), Expect = 2e-10
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPDI-NKCI 94
++V L E+ +LF YG ++ I+ R GF+ D + I
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 65
Query: 95 KELNGMMVDGKPMKVVV 111
K LNG G + V
Sbjct: 66 KGLNGQKPSGATEPITV 82
Score = 34.3 bits (78), Expect = 0.003
Identities = 5/35 (14%), Positives = 18/35 (51%)
Query: 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVEC 337
+S+ +++ + + + + LF +YG+++
Sbjct: 2 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 36
Score = 25.0 bits (54), Expect = 5.4
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 5 HMENDEEGRTAIKELNGQIVN--EKPLKIEAA 34
+ E AIK LNGQ + +P+ ++ A
Sbjct: 54 RFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 85
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 55.1 bits (132), Expect = 2e-10
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 26 EKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI--------V 77
EK L+ +K K+F+G LS T +R + +G + +C +
Sbjct: 2 EKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRS 61
Query: 78 RNYGFVHIDSPDINKCIKELNGMMVDGKPMKVVVA 112
R +GFV S +DG+ ++ A
Sbjct: 62 RGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 96
Score = 29.3 bits (65), Expect = 0.20
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDV--------VKNYGFV 346
K+FIG ++ T+ E +R +E++GK+ +C V + +GFV
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFV 67
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 54.7 bits (131), Expect = 2e-10
Identities = 17/78 (21%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDINKCI 94
+ ++ V N+ R P++R++F +G +++ +I+ N +S D ++
Sbjct: 9 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAR 68
Query: 95 KELNGMMVDGKPMKVVVA 112
++L+G +V+G+ ++V A
Sbjct: 69 EKLHGTVVEGRKIEVNNA 86
Score = 37.7 bits (87), Expect = 2e-04
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPN 41
EN + A ++L+G +V + +++ AT+R N
Sbjct: 53 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTN 93
Score = 30.4 bits (68), Expect = 0.070
Identities = 7/40 (17%), Positives = 21/40 (52%)
Query: 303 SSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN 342
S ++ + N+ +R +F ++GK+++ +++ N
Sbjct: 7 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN 46
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 54.6 bits (131), Expect = 2e-10
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 39 GP---NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDS 87
GP V+VG L + P + ELF+ G VV + + YGFV S
Sbjct: 1 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 60
Query: 88 P-DINKCIKELNGMMVDGKPMKVVVA 112
D + IK ++ + + GKP++V A
Sbjct: 61 EEDADYAIKIMDMIKLYGKPIRVNKA 86
Score = 36.2 bits (83), Expect = 7e-04
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 38
++E+ AIK ++ + KP+++ A++
Sbjct: 57 EFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHN 90
Score = 31.5 bits (71), Expect = 0.033
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVEC 337
+++G ++ S L+ LF + G VV
Sbjct: 11 TVYVGGLDEKVSEPLLWELFLQAGPVVNT 39
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 54.7 bits (131), Expect = 3e-10
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 33 AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVH 84
A + ++GP +F+ +L ++ ++F+P+G VV + + +GFV
Sbjct: 9 AGSQKEGP--EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 66
Query: 85 IDSP-DINKCIKELNGMMVDGKPMKVVVA 112
D+P I+ +NG + K +KV +
Sbjct: 67 YDNPVSAQAAIQSMNGFQIGMKRLKVQLK 95
Score = 35.4 bits (81), Expect = 0.001
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 4 GHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 38
+N + AI+ +NG + K LK++ S+
Sbjct: 65 VSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKN 99
Score = 25.8 bits (56), Expect = 3.4
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVEC 337
+FI ++ + + +F +G VV
Sbjct: 20 NLFIYHLPQEFGDQDLLQMFMPFGNVVSA 48
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 54.3 bits (130), Expect = 3e-10
Identities = 12/78 (15%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-------YGFVHIDSPDINKCI 94
+ +F+ NL + + + F +G ++ C +V + + I
Sbjct: 6 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAI 65
Query: 95 KELNGMMVDGKPMKVVVA 112
+++NGM+++ + + V
Sbjct: 66 EKMNGMLLNDRKVFVGRF 83
Score = 37.7 bits (87), Expect = 2e-04
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 38
H E E AI+++NG ++N++ + + SRK
Sbjct: 50 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 87
Score = 35.4 bits (81), Expect = 0.001
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 300 PGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
P G IFI N++ + + F +G ++ C VV +
Sbjct: 1 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE 44
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 53.9 bits (129), Expect = 3e-10
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPDINKCIKEL 97
K+F+G LS T +R F +GT+ +C ++ R +GFV + +
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 98 NGMMVDGKPMKVVVA 112
VDG+ ++ A
Sbjct: 68 RPHKVDGRVVEPKRA 82
Score = 32.7 bits (74), Expect = 0.009
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346
K+FIG ++ T+ E +R FE++G + +C V+ + +GFV
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 53
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 53.9 bits (129), Expect = 4e-10
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY--------GFVHIDSP-DINK 92
T ++VG L++ + F+P+G + + I +Y FV + D
Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAA 62
Query: 93 CIKELNGMMVDGKPMKVVVA 112
I +N + G+ ++V +A
Sbjct: 63 AIDNMNESELFGRTIRVNLA 82
Score = 34.6 bits (79), Expect = 0.002
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 38
E E+ AI +N + + +++ A +
Sbjct: 53 EFELAEDAAAAIDNMNESELFGRTIRVNLAKPMR 86
Score = 31.2 bits (70), Expect = 0.033
Identities = 4/35 (11%), Positives = 16/35 (45%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
+++G + +++ F +G + + + +Y
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY 41
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 54.0 bits (129), Expect = 5e-10
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 33 AATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVH 84
++ + P +P F+GNL + ++E F + +G+
Sbjct: 4 GSSGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAE 63
Query: 85 IDSPDINKCIKELNGMMVDGKPMKVVVA 112
+ D LN + K ++V VA
Sbjct: 64 FEDLDSLLSALSLNEESLGNKRIRVDVA 91
Score = 27.8 bits (61), Expect = 0.87
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
+ F+GN+ + E I+ F +
Sbjct: 15 PYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPS 51
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 53.5 bits (128), Expect = 5e-10
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVEC------DIVRNYGFVHIDSP-DINKC 93
+ ++VGNLS + + +LF G C Y FV D
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAA 64
Query: 94 IKELNGMMVDGKPMKVVVA 112
+ +NG + GK +KV A
Sbjct: 65 LAAMNGRKILGKEVKVNWA 83
Score = 34.6 bits (79), Expect = 0.002
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 38
+ A+ +NG+ + K +K+ AT+
Sbjct: 50 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPS 87
Score = 30.0 bits (67), Expect = 0.088
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGF 345
+++GN++ + LI LF + G C ++ +
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS 46
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 52.7 bits (126), Expect = 8e-10
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI--VRNYGFVHIDSP-DINKCIKELN 98
+ ++V NL +T + + F + +R+Y FVH + D + +K LN
Sbjct: 6 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALN 65
Query: 99 GMMVDGKPMKVVVA 112
G ++DG P++V +A
Sbjct: 66 GKVLDGSPIEVTLA 79
Score = 31.9 bits (72), Expect = 0.021
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGF 345
+++ N+ TS E+I F V K +
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDY 46
Score = 31.5 bits (71), Expect = 0.026
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 4 GHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 38
H N E+ A+K LNG++++ P+++ A
Sbjct: 49 VHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD 83
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 52.4 bits (125), Expect = 8e-10
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR--------NYGFVHIDSPDINKCIKEL 97
K+FVG LS NT +V+ F +G V + ++ +GFV +S DI + + E+
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60
Query: 98 NGMMVDGKPMKVVVA 112
+ ++ K ++ A
Sbjct: 61 HFHEINNKMVECKKA 75
Score = 31.2 bits (70), Expect = 0.023
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
KIF+G ++ T+VE ++ FE++GKV + ++ +
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDK 35
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 52.8 bits (126), Expect = 9e-10
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY--------GFVHIDSP-DINKCIK 95
T + V L N E R LF G + C +VR+ GFV+ P D K I
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 96 ELNGMMVDGKPMKVVVA 112
LNG+ + K +KV A
Sbjct: 63 TLNGLRLQTKTIKVSYA 79
Score = 32.4 bits (73), Expect = 0.012
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 4 GHMENDEEGRTAIKELNGQIVNEKPLKIEAA 34
+ + ++ AI LNG + K +K+ A
Sbjct: 49 VNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 79
Score = 28.1 bits (62), Expect = 0.42
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVEC 337
+ + + + E R LF G++ C
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESC 32
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 52.3 bits (125), Expect = 1e-09
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKCIKE 96
K+F+G L + +V+EL +G + ++V + Y F ++ I
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 97 LNGMMVDGKPMKVVVA 112
LNGM + K + V A
Sbjct: 63 LNGMQLGDKKLLVQRA 78
Score = 33.8 bits (77), Expect = 0.004
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 38
+ AI LNG + +K L ++ A+
Sbjct: 49 EYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 82
Score = 28.4 bits (63), Expect = 0.35
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346
K+FIG + + + ++ L +G + ++V K Y F
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 48
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 52.5 bits (125), Expect = 2e-09
Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 9/82 (10%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN---------YGFVHIDSPDI 90
P P +++ NLS ++ LF + I +
Sbjct: 14 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIA 73
Query: 91 NKCIKELNGMMVDGKPMKVVVA 112
+ + +NG + GK + +
Sbjct: 74 WQALHLVNGYKLYGKILVIEFG 95
Score = 32.8 bits (74), Expect = 0.011
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 38
+ N E A+ +NG + K L IE ++K
Sbjct: 62 QAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKK 99
Score = 32.5 bits (73), Expect = 0.017
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 295 EARNMPGFSSVG----TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN 342
E R +P FSS +++ N++P + + LF ++ + +
Sbjct: 2 EIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFR 53
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 52.0 bits (124), Expect = 2e-09
Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 43 PTTKVFVGNLSDNTRAPEVR----ELFVPYGTVVECDIV-----RNYGFVHIDSP-DINK 92
P +++ NL++ + E++ +F +G +++ + R FV
Sbjct: 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 61
Query: 93 CIKELNGMMVDGKPMKVVVA 112
++ + G KPM++ A
Sbjct: 62 ALRSMQGFPFYDKPMRIQYA 81
Score = 34.6 bits (79), Expect = 0.002
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 37
+ A++ + G +KP++I+ A +
Sbjct: 52 IFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD 84
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 51.6 bits (123), Expect = 2e-09
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN---------YGFVHIDSPDINKC 93
+ V NLS++TR +++ELF P+G++ + ++ D +
Sbjct: 7 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARA 66
Query: 94 IKELNGMMVDGKPMKVVVA 112
I ++G D + V A
Sbjct: 67 IAGVSGFGYDHLILNVEWA 85
Score = 33.5 bits (76), Expect = 0.006
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 37
+ E+ AI ++G + L +E A
Sbjct: 52 FAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPS 88
Score = 28.5 bits (63), Expect = 0.35
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
I + N++ T ++ LF +G + + K+
Sbjct: 10 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDK 44
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 51.3 bits (122), Expect = 3e-09
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 9/77 (11%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDI---------VRNYGFVHIDSPDINKCIK 95
+++ N + +R+L V R D C++
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVE 61
Query: 96 ELNGMMVDGKPMKVVVA 112
+LNG+ ++G + V+
Sbjct: 62 KLNGLKIEGYTLVTKVS 78
Score = 32.5 bits (73), Expect = 0.011
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 308 FKIFIGNVNPGTSVELIRPLFEKYGKVVEC 337
+++ N P + IR L + V
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALS 31
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 50.8 bits (121), Expect = 4e-09
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 35 TSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN-----YGFVHIDSPD 89
R +++VGNL + R ++ ++F YG + + D+ + FV + P
Sbjct: 5 VIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPR 64
Query: 90 I-NKCIKELNGMMVDGKPMKVVVA 112
+ +G DG ++V
Sbjct: 65 DAEDAVYGRDGYDYDGYRLRVEFP 88
Score = 32.3 bits (73), Expect = 0.018
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 4 GHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG 39
E+ + A+ +G + L++E S +G
Sbjct: 58 VEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRG 93
Score = 30.4 bits (68), Expect = 0.071
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
+I++GN+ P + I +F KYG + + D+
Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR 50
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 50.4 bits (120), Expect = 6e-09
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 32 EAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR-NYGFVHIDSP-- 88
+ TS+K + NLS N E++E+F + + G +I+
Sbjct: 6 DPCTSKK--VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSE 63
Query: 89 -DINKCIKELNGMMVDGKPMKVVVA 112
D K ++E G +DG+ + +
Sbjct: 64 ADAEKNLEEKQGAEIDGRSVSLYYT 88
Score = 33.9 bits (77), Expect = 0.004
Identities = 3/36 (8%), Positives = 15/36 (41%)
Query: 4 GHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG 39
+++ + ++E G ++ + + + + G
Sbjct: 58 IEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93
Score = 27.3 bits (60), Expect = 1.0
Identities = 3/35 (8%), Positives = 13/35 (37%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
+ N++ + + ++ +FE ++
Sbjct: 18 TLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKS 52
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 50.4 bits (120), Expect = 7e-09
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 11/79 (13%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSP-DINKC 93
T+ + V L T +++E F +G V+ + ++ +GFV K
Sbjct: 7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 66
Query: 94 IKELNGMMVDGKPMKVVVA 112
+ + + + DG+ +
Sbjct: 67 MSQRHMI--DGRWCDCKLP 83
Score = 29.9 bits (67), Expect = 0.089
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 307 TFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFV 346
T + + + T+ + ++ F +G+V+ V K+ +GFV
Sbjct: 8 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFV 55
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 49.6 bits (118), Expect = 8e-09
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSPDINKCIKEL 97
K+F+G LS T +RE F +G V EC ++R+ +GFV +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 98 NGMMVDGKPMKVVVA 112
+ +D K + VA
Sbjct: 62 SRHELDSKTIDPKVA 76
Score = 33.0 bits (75), Expect = 0.007
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVEC 337
K+FIG ++ T+ E +R F ++G+V EC
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKEC 30
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 50.1 bits (119), Expect = 8e-09
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 37 RKGPNTPTTKVFVGNL-SDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSPDINKCI- 94
+KG V + + ++ +L P+G + I+ I+
Sbjct: 1 QKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQA 60
Query: 95 ----KELNGMMVDGKPMKV 109
+V GKP++V
Sbjct: 61 AVDYYTTTPALVFGKPVRV 79
Score = 30.8 bits (69), Expect = 0.054
Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 310 IFIGNVNPG-TSVELIRPLFEKYGKVVECDVVKNYGFV 346
+ I + G + L E +G + ++
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEA 48
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 49.6 bits (118), Expect = 8e-09
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP---DINKCIKELNG 99
++V + +R F P+G +++ + + ++ + ELNG
Sbjct: 4 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNG 61
Query: 100 MMVDGKPMKVVVA 112
V+ +KV +A
Sbjct: 62 TQVESVQLKVNIA 74
Score = 30.8 bits (69), Expect = 0.038
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 37
E E A+ ELNG V LK+ A +
Sbjct: 45 TYEKMESADQAVAELNGTQVESVQLKVNIARKQ 77
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 50.1 bits (119), Expect = 9e-09
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DINKC 93
+ ++FV NLS + ++ +LF YG + E + + FV P K
Sbjct: 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA 66
Query: 94 IKELNGMMVDGKPMKVVVA 112
E++G + G+ + V+ +
Sbjct: 67 YAEVDGQVFQGRMLHVLPS 85
Score = 35.1 bits (80), Expect = 0.002
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 38
E A E++GQ+ + L + +T +K
Sbjct: 56 TFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK 89
Score = 29.3 bits (65), Expect = 0.22
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVEC 337
S G+ ++F+ N++ +S E + LF YG + E
Sbjct: 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSEL 38
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 49.7 bits (118), Expect = 9e-09
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSPDINKCIKEL 97
K+FVG + ++T +R+ F YG + +I+ + + FV D D I
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 63
Query: 98 NGMMVDGKPMKVVVA 112
V+G +V A
Sbjct: 64 KYHTVNGHNCEVRKA 78
Score = 27.0 bits (59), Expect = 0.81
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKY 331
KIF+G + T +R FE+Y
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQY 26
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 50.2 bits (119), Expect = 1e-08
Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 17/89 (19%)
Query: 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR-----------------NYGFV 83
++ + ++V L+D+ ++ + F G V +
Sbjct: 5 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVS 64
Query: 84 HIDSPDINKCIKELNGMMVDGKPMKVVVA 112
+ D P ++ +G G +KV +A
Sbjct: 65 YEDPPTAKAAVEWFDGKDFQGSKLKVSLA 93
Score = 32.8 bits (74), Expect = 0.014
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNT 42
++ E+ + A++ +G+ LK+ A + N+
Sbjct: 60 DATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNS 101
Score = 30.9 bits (69), Expect = 0.054
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
I++ +N +++ + F++ G V
Sbjct: 10 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQP 44
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 50.1 bits (119), Expect = 1e-08
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTV--VECDIVRNYGFVHIDSP-DINKCIKELN 98
T + V G L + ++ + G V + + Y F + + + LN
Sbjct: 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLN 77
Query: 99 G-MMVDGKPMKVVVA-GFISSI 118
G +VD K+ + F+ +
Sbjct: 78 GKEVVDDLGQKITLYLNFVEKV 99
Score = 25.8 bits (56), Expect = 3.4
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 5 HMENDEEGRTAIKELNG-QIVNEKPLKI 31
EE + A LNG ++V++ KI
Sbjct: 62 RYRTTEESKRAYVTLNGKEVVDDLGQKI 89
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 49.2 bits (117), Expect = 1e-08
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSPDINKCIKEL 97
K+FVG LS +T ++RE F +G V ++ R + F+ + K I E
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 98 NGMMVDGKPMKVVVA 112
V ++ VA
Sbjct: 61 KYHNVGLSKCEIKVA 75
Score = 33.8 bits (77), Expect = 0.003
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVV--------KNYGFV 346
KIF+G ++P T E IR F +G+V ++ + + F+
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 46
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 48.6 bits (115), Expect = 2e-08
Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN---------YGFVHIDSP-DINKCIKE 96
+F+GNL + + F +G +++ + Y F++ S + I+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 97 LNGMMVDGKPMKVVVA 112
+NG + +P+ V A
Sbjct: 61 MNGQYLCNRPITVSYA 76
Score = 32.4 bits (73), Expect = 0.012
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
IFIGN++P +L+ F +G +++ +
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRD 34
Score = 30.9 bits (69), Expect = 0.046
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 4 GHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 38
+ + + AI+ +NGQ + +P+ + A +
Sbjct: 46 INFASFDASDAAIEAMNGQYLCNRPITVSYAFKKD 80
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 49.0 bits (116), Expect = 2e-08
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTV-VECDIVRNYGFVHIDSP-DINKCIKELN 98
++ ++ + V NL ++ EV +L Y D + FV + + I+ +
Sbjct: 2 SSGSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFH 61
Query: 99 GMMVDGKPMKVVVA 112
GK + V +
Sbjct: 62 QYSFRGKDLIVQLQ 75
Score = 32.4 bits (73), Expect = 0.013
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR----KGPNT 42
+ + N E+ + AI+ + K L ++ + GP++
Sbjct: 42 TAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDALLCSGPSS 87
Score = 28.9 bits (64), Expect = 0.20
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVEC 337
S G+ I + N+ ++ + + L + Y
Sbjct: 2 SSGSSGILVKNLPQDSNCQEVHDLLKDYDLKYCY 35
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 48.9 bits (116), Expect = 3e-08
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSPDINKCIK 95
VF L+ R ++ + F G V + I+ + +V
Sbjct: 18 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI 77
Query: 96 ELNGMMVDGKPMKVVVA 112
L G + G P+ V +
Sbjct: 78 GLTGQRLLGVPIIVQAS 94
Score = 31.9 bits (72), Expect = 0.026
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN 342
+F + + F GKV + ++ +
Sbjct: 20 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISD 53
Score = 26.9 bits (59), Expect = 1.5
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 9 DEEGRTAIKELNGQIVNEKPLKIEAATSRK 38
+ + L GQ + P+ ++A+ + K
Sbjct: 69 EIQSVPLAIGLTGQRLLGVPIIVQASQAEK 98
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 49.0 bits (116), Expect = 3e-08
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 31 IEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI--------VRNYGF 82
++A +++ PT +++ NL + E+ + P+G V+ I
Sbjct: 6 VQAQMAKQQEQDPT-NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFA 64
Query: 83 VHIDSPDINKCIKELNGMMVDGKPMKVVVA 112
+ I NG + P
Sbjct: 65 RMESTEKCEAVIGHFNGKFIKTPPGVSAPT 94
Score = 32.8 bits (74), Expect = 0.013
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAA 34
+ ME+ E+ I NG+ + P
Sbjct: 61 VGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 94
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 48.1 bits (114), Expect = 3e-08
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSPDINKCIKEL 97
K+F+G LS +T ++++ F +G VV+C + + +GFV + + +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 98 NGMMVDGKPMKV 109
++GK +
Sbjct: 61 KEHKLNGKVIDP 72
Score = 31.1 bits (70), Expect = 0.032
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN--------YGFV 346
K+FIG ++ T+ + ++ F K+G+VV+C + + +GFV
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 46
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 48.5 bits (115), Expect = 4e-08
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV----RNYGFVHIDSP-DINKCIKE 96
+P ++ V NL + ++F +GTV++ + + P
Sbjct: 5 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 64
Query: 97 LNGMMVDGKPMKVVVA 112
L+G + + +
Sbjct: 65 LDGQNIYNACCTLRID 80
Score = 32.3 bits (73), Expect = 0.023
Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 299 MPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVV----KNYGFV 346
M G S V +I + N+ +++++ +F K+G V++ + +
Sbjct: 1 MAGQSPV--LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 50
Score = 26.9 bits (59), Expect = 1.7
Identities = 5/34 (14%), Positives = 11/34 (32%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 38
+ + A L+GQ + + S+
Sbjct: 51 QYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 84
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 47.5 bits (112), Expect = 8e-08
Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 4/81 (4%)
Query: 36 SRKGPNTPTT--KVFVGNLSDNTRAPEVRELF-VPYGTVVECDIVRNYGFVHIDSP-DIN 91
S GP T + +V V L + ++++ G V D+
Sbjct: 5 SSGGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDME 64
Query: 92 KCIKELNGMMVDGKPMKVVVA 112
+++L+ +
Sbjct: 65 YALRKLDDTKFRSHEGETSYI 85
Score = 29.0 bits (64), Expect = 0.29
Identities = 3/34 (8%), Positives = 9/34 (26%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 38
E+ A+++L+ +
Sbjct: 56 EYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYP 89
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 47.1 bits (111), Expect = 1e-07
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 13/77 (16%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------------RNYGFVHIDSPDINK 92
+++VGN+ + + F + +N+ F+ S D
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 93 CIKELNGMMVDGKPMKV 109
+G++ G+ +K+
Sbjct: 63 QAMAFDGIIFQGQSLKI 79
Score = 33.6 bits (76), Expect = 0.006
Identities = 5/34 (14%), Positives = 14/34 (41%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN 342
++++GN+ G + E + F ++
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPG 36
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 46.6 bits (110), Expect = 1e-07
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN---------YGFVHIDSPDINK 92
+FV ++ + + E++E F YG + + + +
Sbjct: 5 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALA 64
Query: 93 CIKELNGMMVDGKPMKV 109
+ LNG + G+ ++V
Sbjct: 65 AKEALNGAEIMGQTIQV 81
Score = 35.5 bits (81), Expect = 0.001
Identities = 5/37 (13%), Positives = 16/37 (43%)
Query: 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 37
+ E ++ A + LNG + + ++++ +
Sbjct: 51 YALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 87
Score = 28.5 bits (63), Expect = 0.28
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVEC 337
SV + +F+ +++ + I+ F YG++
Sbjct: 4 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNI 37
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 46.4 bits (109), Expect = 1e-07
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR------NYGFVHIDSPDINKCIKELN 98
T V V NL + +V + F G ++ D+ + + D
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKT 60
Query: 99 GMMVDGKPMKV 109
+V + V
Sbjct: 61 HKVVGQNEIIV 71
Score = 29.0 bits (64), Expect = 0.19
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
+ + N+ + + F+ G ++ DV +
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSL 36
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 46.6 bits (110), Expect = 2e-07
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECD---IVRNYGFVHIDSP-DINKCIKE 96
++ ++ VFVG + + E+RE F YG V++ R + FV
Sbjct: 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG- 60
Query: 97 LNGMMVDGKPMKVVVA 112
+++ G + + A
Sbjct: 61 -EDLIIKGISVHISNA 75
Score = 31.9 bits (72), Expect = 0.019
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 304 SVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECD 338
S G+ +F+G + + +R F +YG V++
Sbjct: 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVF 36
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 46.3 bits (109), Expect = 2e-07
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVEC--------DIVRNYGFVHIDSPDI-NKCIKE 96
K+FVG LS +T + ++F YG + E R +GFV ++ D +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 97 LNGMMVDGKPMKVVVA 112
+NG VDG+ ++V A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 32.4 bits (73), Expect = 0.013
Identities = 7/34 (20%), Positives = 19/34 (55%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 38
EN ++ + A+ +NG+ V+ + ++++ A
Sbjct: 53 TFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSS 86
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 47.2 bits (111), Expect = 3e-07
Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 13/115 (11%)
Query: 7 ENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVGNLSDNTRAPEVRELFV 66
+ D G+TA + Q+ ++ I P+ + V + ++R+LF
Sbjct: 9 QYDPYGQTAQLQ---QLQQQQQQHIPPTQMNPEPDVLR-NLMVNYIPTTVDEVQLRQLFE 64
Query: 67 PYGTVVECDIVRNYGFVHI---------DSPDINKCIKELNGMMVDGKPMKVVVA 112
YG + IV + + I LNG + K +KV +A
Sbjct: 65 RYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119
Score = 34.9 bits (79), Expect = 0.004
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 38
++ + AI LNG + K LK+ A S
Sbjct: 86 YGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGH 123
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 45.5 bits (107), Expect = 4e-07
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 13/81 (16%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV----------RNYGFVHIDSP-DINKC 93
++F+G + + E+ E V IV R + FV +S
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 61
Query: 94 IKELNG--MMVDGKPMKVVVA 112
++L + + G + V A
Sbjct: 62 RRKLMPGRIQLWGHQIAVDWA 82
Score = 31.2 bits (70), Expect = 0.036
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVEC 337
++FIG + E I K + V
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLD 31
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 44.7 bits (105), Expect = 6e-07
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSPD-INKC 93
T + V N+ E+ + F Y + ++ V +S D
Sbjct: 8 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA 67
Query: 94 IKELNGMMVDGKPMKVVVA 112
+ +LN + + +K+V+
Sbjct: 68 VIDLNDRPIGSRKVKLVLG 86
Score = 26.9 bits (59), Expect = 1.2
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 4 GHMENDEEGRTAIKELNGQIVNEKPLKIEAA 34
E+ +E A+ +LN + + + +K+
Sbjct: 56 VAFESRDEATAAVIDLNDRPIGSRKVKLVLG 86
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 44.4 bits (104), Expect = 9e-07
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 15/79 (18%)
Query: 46 KVFVGNLSDNTRAPEVRELFV---PYGTVVECDIVRN--------YGFVHIDSP----DI 90
VFV LS PEV + +G + + I + + D
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 91 NKCIKELNGMMVDGKPMKV 109
+ I+ +N ++VDG+ +K
Sbjct: 70 LRAIQCVNNVVVDGRTLKA 88
Score = 26.3 bits (57), Expect = 1.9
Identities = 5/34 (14%), Positives = 13/34 (38%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKN 342
+F+ ++ + + E +GK + V
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVI 43
Score = 25.2 bits (54), Expect = 5.7
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKI 31
E+ AI+ +N +V+ + LK
Sbjct: 62 TYIRSEDALRAIQCVNNVVVDGRTLKA 88
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 44.8 bits (105), Expect = 1e-06
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 45 TKVFVGNLS-DNTRAPEVRELFVPYGTVVECDIV---RNYGFVHIDSP-DINKCIKELNG 99
+ + V NL+ + + LF YG V I+ + V + + LNG
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNG 62
Query: 100 MMVDGKPMKVVVA 112
+ GKP+++ ++
Sbjct: 63 HKLHGKPIRITLS 75
Score = 31.3 bits (70), Expect = 0.047
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-------GPNTPTTKVFVGNLSDNTR 57
M + + + A+ LNG ++ KP++I + + + TK + + +
Sbjct: 46 QMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFK 105
Query: 58 AP 59
P
Sbjct: 106 KP 107
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 44.6 bits (104), Expect = 1e-06
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 36 SRKGPNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHIDSP---DINK 92
S T + NL T A E++E F +G++ + ++ + K
Sbjct: 2 SSGSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARK 61
Query: 93 CIKELNGMMVDGKPMKV 109
+ L P+ +
Sbjct: 62 AFRHLAYSKFHHVPLYL 78
Score = 31.5 bits (70), Expect = 0.040
Identities = 10/43 (23%), Positives = 13/43 (30%)
Query: 4 GHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTK 46
E R A + L + PL +E A P K
Sbjct: 51 VEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKK 93
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 44.0 bits (103), Expect = 1e-06
Identities = 11/73 (15%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 43 PTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV----RNYGFVHIDSPDI-NKCIKEL 97
P+ + + N+ + +++ LF G VV+ R + + S + + + +L
Sbjct: 9 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDL 68
Query: 98 NGMMV-DGKPMKV 109
+ + + ++V
Sbjct: 69 HNHDLGENHHLRV 81
Score = 27.0 bits (59), Expect = 1.1
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 310 IFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNY 343
+ + N+ P S E ++ LF G VV+
Sbjct: 13 LHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 46
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 43.6 bits (102), Expect = 2e-06
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV--------RNYGFVHIDSP-DIN 91
+T TK+FVG L +T +R+ F +G + E ++ R YGFV +
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 92 KCIKELNGMMVDGKPMKVVVA 112
+ K+ N ++ DG+ V +A
Sbjct: 67 RACKDPNPII-DGRKANVNLA 86
Score = 29.7 bits (66), Expect = 0.15
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 4 GHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNTPTTKVFVG 50
M + A K+ N I + + + A P + T +G
Sbjct: 57 VTMADRAAAERACKDPNPII-DGRKANVNLAYLGAKPRSLQTGFAIG 102
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 42.8 bits (100), Expect = 2e-06
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNY--------GFVHIDSP-DINKCIKEL 97
+++ L T ++ +L PYG +V + + GFV DSP K + L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 98 NGMMVDGKPMK 108
V + K
Sbjct: 61 KASGVQAQMAK 71
Score = 28.2 bits (62), Expect = 0.33
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLK 30
++ + A+ L V + K
Sbjct: 46 DFDSPSAAQKAVTALKASGVQAQMAK 71
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 42.5 bits (99), Expect = 4e-06
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Query: 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVV---ECDIVRNYGFVHIDSP-DINKCIKE 96
P +F+ NL + T + LF + + FV + N +
Sbjct: 5 QPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEA 64
Query: 97 LNGMMVD-GKPMKVVVA 112
L G + MK+ A
Sbjct: 65 LQGFKITPTHAMKITFA 81
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 42.8 bits (100), Expect = 4e-06
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYGFVHI---------DSPDI 90
+ VFVGN+ +++++F G VV +V + D
Sbjct: 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETA 63
Query: 91 NKCIKELNGMMVDGKPMKVVVA 112
++ LNG G+ ++V A
Sbjct: 64 LSAMRNLNGREFSGRALRVDNA 85
Score = 36.7 bits (84), Expect = 5e-04
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 38
++ E +A++ LNG+ + + L+++ A S K
Sbjct: 52 YGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEK 89
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 42.2 bits (98), Expect = 5e-06
Identities = 8/69 (11%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECDI--VRNYGFVHIDSPDINKCIKELNGMMVD 103
+V V L + ++++ G V D+ + D+ +++L+
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFR 61
Query: 104 GKPMKVVVA 112
+
Sbjct: 62 SHEGETAYI 70
Score = 27.9 bits (61), Expect = 0.54
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 1 MSSGHMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK-GPNTP 43
E+ A+++L+ + + GP +P
Sbjct: 37 TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSP 80
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 42.2 bits (98), Expect = 6e-06
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINKCI 94
T +F+GNL+ N E++ + +V R +G+V +S + +
Sbjct: 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKA 70
Query: 95 KELNGMMVDGKPMKVVVA 112
EL G+ V G +K+
Sbjct: 71 LELTGLKVFGNEIKLEKP 88
Score = 28.0 bits (61), Expect = 0.54
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 296 ARNMPGFSSVGTFKIFIGNVNPGTSVELIRPLFEKYGKVVEC 337
+ + G S F +FIGN+NP SV ++ + +
Sbjct: 2 SHMVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL 43
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 42.5 bits (99), Expect = 6e-06
Identities = 9/78 (11%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDI--VRNYGFVHIDSP-DINKCIKE 96
+ + V V L ++ ++ E +GT+ + + V ++ +C+
Sbjct: 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTF 70
Query: 97 L--NGMMVDGKPMKVVVA 112
+ + G+ +
Sbjct: 71 AADVPVYIAGQQAFFNYS 88
Score = 28.2 bits (62), Expect = 0.60
Identities = 4/37 (10%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 4 GHMENDEEGRTAIKELNGQ--IVNEKPLKIEAATSRK 38
EN + + + + + +TS++
Sbjct: 56 VEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 41.4 bits (97), Expect = 1e-05
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 60 EVRELFVPYGTVVECDIVRN----YGFVHIDSP-DINKCIKELNGMMVDGKPMKV 109
++R +G + + + V P + + CI+ L+G G+ +
Sbjct: 35 DLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITA 89
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 41.3 bits (96), Expect = 2e-05
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 42 TPTTKVFVGNLSDNTRAPEVRELFVPY--GTVVECDIVRNYGFVHIDSP--DINKCIKEL 97
F G+L D T ++ LF + ++ G + + K+
Sbjct: 9 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDA 68
Query: 98 NGMMVDGKPMKVVV 111
N + + +V
Sbjct: 69 NNGNLQLRNKEVTW 82
Score = 30.9 bits (69), Expect = 0.080
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 305 VGTFKIFIGNVNPGTSVELIRPLFEKYGKVVECDVVKNYGF 345
+G F G+++ T E + LF +G++ D V+
Sbjct: 9 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKE 49
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 40.6 bits (94), Expect = 2e-05
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 15/86 (17%)
Query: 42 TPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN---------YGFVHIDSPDINK 92
T VF+ NLS ++ + E+ +G + +V + + K
Sbjct: 6 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQK 65
Query: 93 CIKELN------GMMVDGKPMKVVVA 112
C+ + G+ +DG+ +KV +A
Sbjct: 66 CLAAASLEAEGGGLKLDGRQLKVDLA 91
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 42.3 bits (98), Expect = 2e-05
Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 12/120 (10%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKG----PNTPTTKVFVGNLSDNTRAPE 60
EE A+ ++ A + + K+FVG + ++T
Sbjct: 54 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 113
Query: 61 VRELFVPYGTVVECDI--------VRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVVVA 112
+R+ F YG + +I R + FV D D I V+G +V A
Sbjct: 114 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 173
Score = 40.8 bits (94), Expect = 8e-05
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 46 KVFVGNLSDNTRAPEVRELFVPYGTVVECD--------IVRNYGFVHIDSPDINKCIKEL 97
K+F+G LS T +R F +GT+ +C R +GFV + +
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 98 NGMMVDGKPMKVVVAGFISSILSCLNVIFFIRCGRGGHW 136
VDG+ ++ A + + GG
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIK 106
Score = 38.4 bits (88), Expect = 5e-04
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 309 KIFIGNVNPGTSVELIRPLFEKYGKVVECD 338
K+FIG ++ T+ E +R FE++G + +C
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCV 37
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 39.8 bits (92), Expect = 4e-05
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 5/77 (6%)
Query: 38 KGPNTPTTKVFVGNLSDNTRAPEVRELF--VPYGTVVECDIVRNYGFVHIDSP-DINKCI 94
K P+ + + L EV L T + +N F+ + + +
Sbjct: 2 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMV 61
Query: 95 KE--LNGMMVDGKPMKV 109
+ +P+ +
Sbjct: 62 NYYSAVTPHLRNQPIYI 78
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 39.3 bits (91), Expect = 5e-05
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 44 TTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIV-------RNYGFVHIDSPDINKCIKE 96
V++ + +++E G V+ + + FV DS + K E
Sbjct: 6 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 65
Query: 97 LNGMMVDGKPMKV 109
G + +
Sbjct: 66 TPGQKYKETDLLI 78
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 39.3 bits (91), Expect = 5e-05
Identities = 13/78 (16%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 45 TKVFVGNLS-DNTRAPEVRELFVPYGTVVECDIV---------RNYGFVHIDSPDINKCI 94
++ + NLS + +RE F +G++ + +I F+ ++ D +
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 64
Query: 95 KELNGMMVDGKPMKVVVA 112
++N ++ + + V +A
Sbjct: 65 LQMNRSLLGNREISVSLA 82
Score = 28.6 bits (63), Expect = 0.29
Identities = 5/34 (14%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 4 GHMENDEEGRTAIKELNGQIVNEKPLKIEAATSR 37
EN + A+ ++N ++ + + + A +
Sbjct: 53 MVFENKDSAERAL-QMNRSLLGNREISVSLADKK 85
Score = 24.3 bits (52), Expect = 9.9
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 304 SVGTFKIFIGNVNPGTSVE-LIRPLFEKY 331
++ +I I N++ E L+R FE +
Sbjct: 1 TLEGREIMIRNLSTELLDENLLRESFEGF 29
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 38.4 bits (89), Expect = 9e-05
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 45 TKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVR--NYGFVHIDSPDINKCIKELNGMMV 102
T V V + A + F YG +++ + N+ + S + +G +
Sbjct: 5 TWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIF 63
Query: 103 DGKPMKVV 110
M V
Sbjct: 64 GESIMIGV 71
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 37.8 bits (87), Expect = 2e-04
Identities = 7/78 (8%), Positives = 22/78 (28%), Gaps = 6/78 (7%)
Query: 41 NTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRNYG------FVHIDSPDINKCI 94
+T V + L ++ F P + + G V + +
Sbjct: 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAA 71
Query: 95 KELNGMMVDGKPMKVVVA 112
+ + + +++ +
Sbjct: 72 MAKDKANMQHRYVELFLN 89
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 36.4 bits (83), Expect = 4e-04
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 47 VFVGNLSDNTRAPEVRELFVPYG-TVVECDIVRNYGFVHIDSP-DINKCIKELNGMMVDG 104
+ + L + EV +L Y D + FV + + I + +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLRE 60
Query: 105 KPMKVVVA 112
+ + V +
Sbjct: 61 RELSVQLQ 68
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 36.7 bits (84), Expect = 5e-04
Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 8/81 (9%)
Query: 40 PNTPTTKVFVGNLSDNTRAPEVRELFVPYGTVVECDIVRN--------YGFVHIDSPDIN 91
N+ + N+ + +V + V V + D
Sbjct: 4 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDA 63
Query: 92 KCIKELNGMMVDGKPMKVVVA 112
+ + L+ ++G+ V V
Sbjct: 64 RKSERLHRKKLNGREAFVHVV 84
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 36.1 bits (83), Expect = 9e-04
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 21/89 (23%)
Query: 42 TPTTKVFVGNLSD----------NTRAPEVRELFVPYGTVVECDIVRN--------YGFV 83
PT + + N+ +VR+ YG V +I R G +
Sbjct: 2 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKI 61
Query: 84 HIDSPDIN---KCIKELNGMMVDGKPMKV 109
++ + K ++ L G + +
Sbjct: 62 FVEFTSVFDCQKAMQGLTGRKFANRVVVT 90
Score = 27.3 bits (60), Expect = 1.3
Identities = 3/34 (8%), Positives = 12/34 (35%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRK 38
+ + + A++ L G+ + + +
Sbjct: 64 EFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDS 97
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency
virus type 1, different isolates [TaxId: 11676]}
Length = 42
Score = 33.3 bits (76), Expect = 0.003
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 123 NVIFFIRCGRGGHWSKECPRAGNFRSSGCYCKSKSSH 159
NV F CG+ GH ++ C R GC+ K H
Sbjct: 1 NVKCF-NCGKEGHTARNCRAP---RKKGCWKCGKEGH 33
Score = 28.7 bits (64), Expect = 0.099
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 129 RCGRGGHWSKECP 141
+CG+ GH K+C
Sbjct: 27 KCGKEGHQMKDCT 39
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 99
Score = 29.6 bits (65), Expect = 0.19
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 43 PTTKVFVGNLSDNTRAPE-VRELFVPYGTVVECDIVRNYGFVHIDSPDINKCIK-----E 96
+ + NL + + V +L PYG + ++R I+ +
Sbjct: 17 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCL 76
Query: 97 LNGMMVDGKPMKVVVA 112
+ G+ +KV ++
Sbjct: 77 KKALWFQGRCVKVDLS 92
>d1k92a2 d.210.1.1 (A:189-444) Argininosuccinate synthetase,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 256
Score = 29.6 bits (66), Expect = 0.52
Identities = 10/88 (11%), Positives = 19/88 (21%), Gaps = 2/88 (2%)
Query: 214 PGPLDRFGYPREAYPRDPYPPPPPPSFLRDRMMGGYPMKFG--LILIPRSQIESLDLCGH 271
+ P P + R G+P+ + + G
Sbjct: 21 LNSSVKIVNPIMGVKFWDESVKIPAEEVTVRFEQGHPVALNGKTFSDDVEMMLEANRIGG 80
Query: 272 FKQTKTTIVWSPRYQSFGTVVVIEARNM 299
+ R + + EA M
Sbjct: 81 RHGLGMSDQIENRIIEAKSRGIYEAPGM 108
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey
virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Length = 32
Score = 25.9 bits (57), Expect = 0.67
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 129 RCGRGGHWSKEC 140
RC RG HW+ EC
Sbjct: 7 RCKRGKHWANEC 18
>d1dsva_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse
mammary tumor virus [TaxId: 11757]}
Length = 31
Score = 25.5 bits (56), Expect = 0.93
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 129 RCGRGGHWSKEC 140
RC +G HW EC
Sbjct: 7 RCKKGYHWKSEC 18
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 27.4 bits (60), Expect = 1.1
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 5 HMENDEEGRTAIKELNGQIVNEKPLKIEAATSRKGPNT 42
+ N A L+ K +K+ A + ++
Sbjct: 52 NFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLHIGSS 89
>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine
leukemia virus, MoMLV [TaxId: 11801]}
Length = 40
Score = 25.3 bits (55), Expect = 1.5
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 130 CGRGGHWSKECPR 142
C GHW+K+CP+
Sbjct: 16 CKEKGHWAKDCPK 28
>d1f1sa2 b.1.18.2 (A:171-248) Hyaluronate lyase precatalytic
domain {Streptococcus agalactiae [TaxId: 1311]}
Length = 78
Score = 25.4 bits (55), Expect = 3.8
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 4 GHMENDEEGRTAIK--ELNGQIVNEKPLKIEAAT 35
G + + G T +K + +G+I+ E PL + A+T
Sbjct: 45 GILYPNATGSTTVKISDKSGKIIKEVPLSVTAST 78
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 26.3 bits (57), Expect = 4.2
Identities = 11/100 (11%), Positives = 29/100 (29%), Gaps = 7/100 (7%)
Query: 76 IVRNYGFVHIDSPDINKCIKELNGMMVDGKPMKVVVAGFISSILSCLNVIFFIRCGRGGH 135
I +++ H+ S D+ + G K + ++ + +
Sbjct: 26 ITKHFELKHLSSGDL--LRDNMLRGTEIGVLAKTFIDQG--KLIPDDVMTRLVLHELKNL 81
Query: 136 WSKECPRAGNFRSSGCYCKSKSSHKIYQDALVLWEDQDLW 175
G R ++++ + YQ V+ +
Sbjct: 82 TQYNWLLDGFPR---TLPQAEALDRAYQIDTVINLNVPFE 118
>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
{Streptococcus pyogenes [TaxId: 1314]}
Length = 152
Score = 25.8 bits (55), Expect = 5.1
Identities = 13/129 (10%), Positives = 32/129 (24%), Gaps = 6/129 (4%)
Query: 216 PLDRFGYPREAYPRDPYPPPPPPSFLRDRMMGGYPMKFGLILIPRSQIESLDLCGHFKQT 275
P + + + ++ I E++ HFKQ
Sbjct: 23 PHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQLFETVLKPLHFKQP 82
Query: 276 KTTIVWSPRYQSFGTVVVIEARNMPGFSSVGTFK------IFIGNVNPGTSVELIRPLFE 329
++ Q T V + + ++ + + +R L +
Sbjct: 83 IISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTD 142
Query: 330 KYGKVVECD 338
+G +
Sbjct: 143 SFGSTFDIS 151
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.445
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,414,719
Number of extensions: 70687
Number of successful extensions: 511
Number of sequences better than 10.0: 1
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 209
Length of query: 346
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,226,816
Effective search space: 318972160
Effective search space used: 318972160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.8 bits)