BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16421
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG 88
T + PP+I+ P + VR G S CAA G PPPSI+WR+ G
Sbjct: 2 TGAHPPEIIRKPQNQG--VRVGGVASFYCAARGDPPPSIVWRKNG 44
Score = 32.3 bits (72), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 12 YLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMR 71
Y C+A NGV +VS L + Y T + P I P + I V G V M
Sbjct: 80 YECVAENGVGDAVSADATLTI---YEGD---KTPAGFPVITQGPGTRVIEV--GHTVLMT 131
Query: 72 CAASGSPPPSIMW 84
C A G+P P+I W
Sbjct: 132 CKAIGNPTPNIYW 144
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG 88
+++ PP+I+ P + VR G S CAA G PPPSI+WR+ G
Sbjct: 4 SAAHPPEIIRKPQNQG--VRVGGVASFYCAARGDPPPSIVWRKNG 46
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 12 YLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMR 71
Y C+A NGV +VS L + Y T + P I P + I V G V M
Sbjct: 82 YECVAENGVGDAVSADATLTI---YEGD---KTPAGFPVITQGPGTRVIEV--GHTVLMT 133
Query: 72 CAASGSPPPSIMW 84
C A G+P P+I W
Sbjct: 134 CKAIGNPTPNIYW 146
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 42 IYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN 98
+ PP I+++P SD++V +G ++ C A G P P+I W + GGE + ++
Sbjct: 3 LRQEDFPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDD 56
Score = 33.5 bits (75), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 15/85 (17%)
Query: 5 SREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVRE 64
SR G Y+C+A N + +VS L V + D P SD+MV
Sbjct: 80 SRPDEGVYVCVARNYLGEAVSHDASLEVAI------------LRDDFRQNP--SDVMVAV 125
Query: 65 GSNVSMRCAA-SGSPPPSIMWRREG 88
G M C G P P+I W+++G
Sbjct: 126 GEPAVMECQPPRGHPEPTISWKKDG 150
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 42 IYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN 98
+ PP I+++P SD++V +G ++ C A G P P+I W + GGE + ++
Sbjct: 3 LRQEDFPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDD 56
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 16/87 (18%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
V H G + C A N L Q+ + L +Y +PP + PT D
Sbjct: 684 VEASHAGNFTCHARN-----------LAGHQQFTTPLNVY---VPPRWILEPT--DKAFA 727
Query: 64 EGSNVSMRCAASGSPPPSIMWRREGGE 90
+GS+ + C A G P P + W++ G+
Sbjct: 728 QGSDAKVECKADGFPKPQVTWKKAVGD 754
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 65 GSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
G +V ++C A G+P P I W +G ++ N
Sbjct: 444 GPSVFLKCVAGGNPTPEISWELDGKKIANND 474
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPS 108
P L PT+ I + + C ASG+P P I+W R G + + VP + +I S
Sbjct: 39 PVFLKEPTNR-IDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGD-----VPGLRQISS 92
Query: 109 Q 109
Sbjct: 93 D 93
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQC 34
+ + + G YLC A NG+ +S IM+ VQ
Sbjct: 780 IQKTNEGYYLCEAINGIGSGLSAVIMISVQA 810
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 88 GGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGD 141
G + T N VPP + +G +EC ++ +PK W + GD
Sbjct: 701 GHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGD 754
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ S + G Y+C+A + KR ++ Q ++ ++ ++ + TS
Sbjct: 629 LKNASLQDQGDYVCLAQD---RKTKKRHCVVRQLTVLERV---APTITGNLENQTTSI-- 680
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
G ++ + C ASG+PPP IMW ++ ++ +S
Sbjct: 681 ----GESIEVSCTASGNPPPQIMWFKDNETLVEDS 711
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 13/85 (15%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
V+R G Y C AS+G+ ++K+ + ++ P S +
Sbjct: 297 VTRSDQGLYTCAASSGL---MTKK----------NSTFVRVHEKPFVAFGSGMESLVEAT 343
Query: 64 EGSNVSMRCAASGSPPPSIMWRREG 88
G V + G PPP I W + G
Sbjct: 344 VGERVRIPAKYLGYPPPEIKWYKNG 368
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
V E G Y C A N + + + +I+ Q PD LD T ++ +
Sbjct: 264 VDFEDEGTYECEAEN-IKGRDTYQGRIIIHAQ-------------PDWLDVITDTEADI- 308
Query: 64 EGSNVSMRCAASGSPPPSIMWRREG 88
GS++ C ASG P P++ W R+G
Sbjct: 309 -GSDLRWSCVASGKPRPAVRWLRDG 332
Score = 29.3 bits (64), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGG 89
+D G V++ C A G+P P I WR+ G
Sbjct: 215 ADTYALTGQMVTLECFAFGNPVPQIKWRKLDG 246
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 20/121 (16%)
Query: 12 YLCIASNGVPP-SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSM 70
Y C+ASN V SVS R+ ++ + Q T M P + +V +M
Sbjct: 79 YECVASNNVGEISVSTRLTVLREDQIPRGFP--TIDMGPQLK--------VVERTRTATM 128
Query: 71 RCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGA------HEGQQLVLECI 124
CAASG+P P I W ++ + T++ N I ++ S+ IGA E Q EC+
Sbjct: 129 LCAASGNPDPEITWFKDFLPVDTSNNNGR---IKQLRSESIGALQIEQSEESDQGKYECV 185
Query: 125 S 125
+
Sbjct: 186 A 186
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF 96
T PP P D G S C A+G P P I+W ++G ++ F
Sbjct: 2 TGETPPRFTRTPV--DQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRF 52
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 8 HMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSN 67
G Y C+A+N V+ + LY+ ++ P P S +IM G N
Sbjct: 175 DQGKYECVATNSAG----------VRYSSPANLYVRVQNVAPRFSILPMSHEIM--PGGN 222
Query: 68 VSMRCAASGSPPPSIMWRREGGEMIT 93
V++ C A GSP P + W +G E +T
Sbjct: 223 VNITCVAVGSPMPYVKW-MQGAEDLT 247
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 11/115 (9%)
Query: 12 YLCIASNGVPP-SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSM 70
Y C+A N V +V ++ ++ + Q S P+I P +V +M
Sbjct: 79 YECVAQNSVGEITVHAKLTVLREDQLPSGF--------PNIDMGPQLK--VVERTRTATM 128
Query: 71 RCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECIS 125
CAASG+P P I W ++ + ++ N + + Q+ + E Q EC++
Sbjct: 129 LCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVA 183
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF 96
T PP + P D + G S C A+G P P + W ++G ++ + F
Sbjct: 2 TGEEPPRFIKEP--KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRF 52
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 18/86 (20%)
Query: 4 VSREHMGAYLCIASNGV-PPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMV 62
VS E G Y C A N +V RI++ Q ++ + SD
Sbjct: 263 VSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVI-----------------SDTEA 305
Query: 63 REGSNVSMRCAASGSPPPSIMWRREG 88
GSN+ CAA+G P P++ W R G
Sbjct: 306 DIGSNLRWGCAAAGKPRPTVRWLRNG 331
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 9 MGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDI-LDYPTSSDIMVREGSN 67
+G Y C+A++ + S Q ++ T P I +P + +V G
Sbjct: 169 LGNYSCLATSHMDFSTKSVFSKFAQLNLAAE---DTRLFAPSIKARFPAETYALV--GQQ 223
Query: 68 VSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPS 108
V++ C A G+P P I WR+ G + T P ++IPS
Sbjct: 224 VTLECFAFGNPVPRIKWRKVDGSLSPQW--TTAEPTLQIPS 262
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 54 YP--TSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEM 91
YP T+S MV G ++ + C ASG P P I W ++GG++
Sbjct: 224 YPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL 263
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+T VS E G Y C+ASN + S+ I + V+ P LD P ++
Sbjct: 279 ITNVSEEDSGEYFCLASNKMG-SIRHTISVRVKAA-------------PYWLDEP--KNL 322
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREG 88
++ G + + C A+G+P P++ W G
Sbjct: 323 ILAPGEDGRLVCRANGNPKPTVQWMVNG 350
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 7 EHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGS 66
E+ G Y C A N ++S RI L V SK ++ P + LD ++V+EG+
Sbjct: 87 EYEGEYQCFARNKFGTALSNRIRLQV-----SKSPLW----PKENLD-----PVVVQEGA 132
Query: 67 NVSMRCA-ASGSPPPSIMWRREGGEMIT 93
++++C G P P I W E IT
Sbjct: 133 PLTLQCNPPPGLPSPVIFWMSSSMEPIT 160
Score = 29.3 bits (64), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRR 86
+ PP I ++ D +V N+ + C A G+P PS W R
Sbjct: 14 TQPPTITKQ-SAKDHIVDPRDNILIECEAKGNPAPSFHWTR 53
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
P I+++PT D++V++ ++ C G P P+I W ++G + TN
Sbjct: 10 PRIIEHPT--DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNE 54
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 15/80 (18%)
Query: 10 GAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVS 69
G Y C+A N V +VS+ L + + + D P D V +G
Sbjct: 82 GEYWCVAKNRVGQAVSRHASLQI------------AVLRDDFRVEP--KDTRVAKGETAL 127
Query: 70 MRCA-ASGSPPPSIMWRREG 88
+ C G P P+++W ++G
Sbjct: 128 LECGPPKGIPEPTLIWIKDG 147
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
P I+++PT D++V++ ++ C G P P+I W ++G + TN
Sbjct: 10 PRIIEHPT--DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNE 54
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 15/80 (18%)
Query: 10 GAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVS 69
G Y C+A N V +VS+ L + + + D P D V +G
Sbjct: 82 GEYWCVAKNRVGQAVSRHASLQI------------AVLRDDFRVEP--KDTRVAKGETAL 127
Query: 70 MRCA-ASGSPPPSIMWRREG 88
+ C G P P+++W ++G
Sbjct: 128 LECGPPKGIPEPTLIWIKDG 147
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 27/127 (21%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
V++ + G Y A+NG + S ++L + + PP+ + S + VR
Sbjct: 70 VTKANSGRYSLKATNGSGQATST-----------AELLVKAETAPPNFVQRLQS--MTVR 116
Query: 64 EGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLEC 123
+GS V ++ +G P P + + R+G E I +S + + + EG L
Sbjct: 117 QGSQVRLQVRVTGIPTPVVKFYRDGAE-IQSSLDFQI------------SQEGDLYSL-L 162
Query: 124 ISEAYPK 130
I+EAYP+
Sbjct: 163 IAEAYPE 169
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF 96
++V EGS + SG P P + W R+G + T++
Sbjct: 15 VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTL 51
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 27/127 (21%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
V++ + G Y A+NG + S ++L + + PP+ + S + VR
Sbjct: 70 VTKANSGRYSLKATNGSGQATST-----------AELLVKAETAPPNFVQRLQS--MTVR 116
Query: 64 EGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLEC 123
+GS V ++ +G P P + + R+G E I +S + + + EG L
Sbjct: 117 QGSQVRLQVRVTGIPTPVVKFYRDGAE-IQSSLDFQI------------SQEGDLYSL-L 162
Query: 124 ISEAYPK 130
I+EAYP+
Sbjct: 163 IAEAYPE 169
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF 96
++V EGS + SG P P + W R+G + T++
Sbjct: 15 VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTL 51
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 59 DIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLI 111
++ VR SN ++ C +G P P + W R+G E+I + + QLI
Sbjct: 11 NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 63
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIM-----LIVQCQYFSKLYIYTSSMPPDILDYP 55
+ +V + +G Y C+ +N V + +++ LI++ Y P + +P
Sbjct: 161 IAKVEKSDVGNYTCVVTNTV---TNHKVLGPPTPLILRNDGVMGEY-----EPKIEVQFP 212
Query: 56 TSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMI 92
+ + +G+ V + C A G+P P+I+WRR G+ I
Sbjct: 213 ET--VPAEKGTTVKLECFALGNPVPTILWRRADGKPI 247
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 16/88 (18%)
Query: 6 REHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREG 65
+E G+Y C+A N +V+K +L Y I++ DI V
Sbjct: 267 QEDAGSYECVAENSRGKNVAK-----------GQLTFYAQPNWVQIIN-----DIHVAME 310
Query: 66 SNVSMRCAASGSPPPSIMWRREGGEMIT 93
+V C A+G P P+ W + G ++T
Sbjct: 311 ESVFWECKANGRPKPTYRWLKNGDPLLT 338
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 64 EGSNVSMRCAASGSPPPSIMWRREGGEM 91
E V + C G+P P I W+ G ++
Sbjct: 22 EEKKVKLSCEVKGNPKPHIRWKLNGTDV 49
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 59 DIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLI 111
++ VR SN ++ C +G P P + W R+G E+I + + QLI
Sbjct: 13 NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 65
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIM-----LIVQCQYFSKLYIYTSSMPPDILDYP 55
+ +V + +G Y C+ +N V + +++ LI++ Y P + +P
Sbjct: 160 IAKVEKSDVGNYTCVVTNTV---TNHKVLGPPTPLILRNDGVMGEY-----EPKIEVQFP 211
Query: 56 TSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMI 92
+ + +G+ V + C A G+P P+I+WRR G+ I
Sbjct: 212 ET--VPAEKGTTVKLECFALGNPVPTILWRRADGKPI 246
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 16/88 (18%)
Query: 6 REHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREG 65
+E G+Y C+A N +V+K +L Y I++ DI V
Sbjct: 266 QEDAGSYECVAENSRGKNVAK-----------GQLTFYAQPNWVQIIN-----DIHVAME 309
Query: 66 SNVSMRCAASGSPPPSIMWRREGGEMIT 93
+V C A+G P P+ W + G ++T
Sbjct: 310 ESVFWECKANGRPKPTYRWLKNGDPLLT 337
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 64 EGSNVSMRCAASGSPPPSIMWRREGGEM 91
E V + C G+P P I W+ G ++
Sbjct: 21 EEKKVKLSCEVKGNPKPHIRWKLNGTDV 48
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homo1
Length = 118
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG 88
SS PP I P + + V +G+ V + C A+GSP P+I+WR++G
Sbjct: 5 SSGPPVIRQGPVNQTVAV-DGTFV-LSCVATGSPVPTILWRKDG 46
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 65 GSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
G ++ + C ASG+PPP IMW ++ ++ +S
Sbjct: 25 GESIEVSCTASGNPPPQIMWFKDNETLVEDS 55
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 59 DIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLI 111
++ VR SN ++ C +G P P + W R+G E+I + + QLI
Sbjct: 13 NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 65
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.7 bits (78), Expect = 0.019, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 57 SSDIMVREGSNVSMRCAASGSPPPSIMW 84
+ + V EG V C A G PPP+I+W
Sbjct: 392 AQQVFVDEGHTVQFVCRADGDPPPAILW 419
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV 100
T +PP L++P S++ E ++ CA SG P P++ W + G +I + + V
Sbjct: 308 TVLVPPWFLNHP--SNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV 362
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMI 92
S+++ EG + + C SG PPPS W R G E+I
Sbjct: 229 SNVIAIEGKDAVLECCVSGYPPPSFTWLR-GEEVI 262
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 23/93 (24%)
Query: 5 SREHM---GAYLCIASNGVPPSV---SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSS 58
SR H G Y C AS G S+ + ++M+ ++ S+ T+ M
Sbjct: 87 SRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFM----------- 135
Query: 59 DIMVREGSNVSMRCAASGSPPPSIMWRREGGEM 91
G V ++C G P P+I W++ ++
Sbjct: 136 ------GDTVLLKCEVIGDPMPTIHWQKNQQDL 162
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 22/94 (23%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMP-PDILDYPTSSD 59
+ V G Y C S+ PS++K + FSK + +P P+ P +D
Sbjct: 70 IANVEASDKGNYSCFVSS---PSITKSV--------FSK---FIPLIPIPERTTKPYPAD 115
Query: 60 IMVR-------EGSNVSMRCAASGSPPPSIMWRR 86
I+V+ G NV++ C A G+P P I WR+
Sbjct: 116 IVVQFKDVYALMGQNVTLECFALGNPVPDIRWRK 149
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 34.3 bits (77), Expect = 0.031, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
Query: 3 EVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMV 62
+ + H+G Y C ASN + + S +KL + +PP P S D+ +
Sbjct: 163 QTDQSHVGQYNCSASNPLGTASSS-----------AKLTLSEHEVPPFFDLKPVSVDLAL 211
Query: 63 REGSNVSMRCAASGSPPPSIMWRREGGEM 91
G + + +C +G+ P I W ++ E+
Sbjct: 212 --GESGTFKCHVTGTAPIKITWAKDNREI 238
Score = 29.6 bits (65), Expect = 0.74, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 18/95 (18%)
Query: 4 VSREHMGAYLCIASNGV-PPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMV 62
V +G Y C ASN V + I L ++ KL SDI
Sbjct: 447 VDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKL-----------------SDIST 489
Query: 63 REGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN 97
G V ++ G+ P S+ W ++ GE++ S N
Sbjct: 490 VVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDN 524
Score = 29.3 bits (64), Expect = 1.0, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ +V +G Y C A N V S +++I + +PP D+
Sbjct: 65 INKVDHSDVGEYTCKAENSVGAVASSAVLVIKE-----------RKLPPSFAR--KLKDV 111
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN 97
G V+ C +GS P + W ++ GE++ + N
Sbjct: 112 HETLGFPVAFECRINGSEPLQVSWYKD-GELLKDDAN 147
Score = 27.3 bits (59), Expect = 3.7, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEM 91
PP P + + +G++V + C G+PP + W ++ E+
Sbjct: 384 PPVFRKKPHPVETL--KGADVHLECELQGTPPFQVSWHKDKREL 425
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 33.5 bits (75), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 18/80 (22%)
Query: 7 EHMGAYLCIASNGV--PPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVRE 64
E G Y C NGV P S ++ ++ +Y K P + I+V++
Sbjct: 280 EDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQK--------PEKV--------IVVKQ 323
Query: 65 GSNVSMRCAASGSPPPSIMW 84
G +V++ C +G P P+++W
Sbjct: 324 GQDVTIPCKVTGLPAPNVVW 343
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 33.5 bits (75), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMW 84
+PP I P SDI + EG +++ CA +G P P + W
Sbjct: 6 IPPKIEALP--SDISIDEGKVLTVACAFTGEPTPEVTW 41
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 42 IYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG 88
I ++PP I S + G ++ C ASGSP P+I W R G
Sbjct: 186 IVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNG 232
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 15/91 (16%)
Query: 7 EHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGS 66
E G Y C A++ + ++L + + KL P + ++G
Sbjct: 70 EDAGIYRCQATDAKGQTQEATVVL----EIYQKLTFREVVSPQEF-----------KQGE 114
Query: 67 NVSMRCAASGSPPPSIMWRREGGEMITNSFN 97
+ + C S SP P++ W E+ T S N
Sbjct: 115 DAEVVCRVSSSPAPAVSWLYHNEEVTTISDN 145
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 65/186 (34%)
Query: 7 EHMGAYLCI--ASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVRE 64
+ G Y C+ A +G + V + F KL + P + +E
Sbjct: 72 DDAGIYKCVVTAEDGTQSEAT------VNVKIFQKLMFKNAPTPQEF-----------KE 114
Query: 65 GSNVSMRCAASGSPPPSIMWRREGGEMITN------------------------------ 94
G + + C S PP+I+W+ +G ++I
Sbjct: 115 GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEG 174
Query: 95 --------SFNN-----TVPPIVKIPSQLIGA--HEGQQLVLECISEAYPKSVNYWTREK 139
+F + VPP V+ ++ A + GQ + L C ++ +P+ WT++
Sbjct: 175 RILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD- 233
Query: 140 GDMIAN 145
G+ I N
Sbjct: 234 GEPIEN 239
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMW 84
+PP I P SDI + EG +++ CA +G P P + W
Sbjct: 4 IPPKIEALP--SDISIDEGKVLTVACAFTGEPTPEVTW 39
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 33.1 bits (74), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVP 101
PP L +P + V G+ ++C G PPP ++W + GG+ + S + P
Sbjct: 14 PPCFLRFPRP--VRVVSGAEAELKCVVLGEPPPVVVWEK-GGQQLAASERLSFP 64
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 33.1 bits (74), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVP 101
PP L +P + V G+ ++C G PPP ++W + GG+ + S + P
Sbjct: 13 PPCFLRFPRP--VRVVSGAEAELKCVVLGEPPPVVVWEK-GGQQLAASERLSFP 63
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 33.1 bits (74), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 42 IYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG 88
I ++PP I S + G ++ C ASGSP P+I W R G
Sbjct: 90 IVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNG 136
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 33.1 bits (74), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG 88
SS PP IL P + + V +G+ + ++C A+G P P I W +EG
Sbjct: 5 SSGPPIILQGPANQTLAV-DGTAL-LKCKATGDPLPVISWLKEG 46
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 32.7 bits (73), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLV 120
+V +G +M CAA G+P P I W ++ + + N + + Q+ + E Q
Sbjct: 120 VVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGK 179
Query: 121 LECIS 125
EC++
Sbjct: 180 YECVA 184
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 65 GSNVSMRCAASGSPPPSIMWRREGGEMITNSF 96
G S C A+G P P I W ++G ++ + F
Sbjct: 22 GGVASFVCQATGEPKPRITWMKKGKKVSSQRF 53
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 32.3 bits (72), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 19/88 (21%)
Query: 7 EHMGAYLCI--ASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVRE 64
+ G Y C+ A +G + V + F KL + P + +E
Sbjct: 72 DDAGIYKCVVTAEDGTQSEAT------VNVKIFQKLMFKNAPTPQEF-----------KE 114
Query: 65 GSNVSMRCAASGSPPPSIMWRREGGEMI 92
G + + C S PP+I+W+ +G ++I
Sbjct: 115 GEDAVIVCDVVSSLPPTIIWKHKGRDVI 142
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain
Of Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMI 92
V EG +V + C S PPP + W+R EM+
Sbjct: 27 VLEGDSVKLECQISAIPPPKLFWKR-NNEMV 56
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG 88
+S P L P D+ V+EG M C SG P P + W+ +G
Sbjct: 5 SSGFRPHFLQAP--GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDG 47
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 14/88 (15%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ V+R AY+C N V + S + L V +Y P I+ P SS +
Sbjct: 524 LFNVTRNDARAYVCGIQNSVSANRSDPVTLDV---------LYGPDTP--IISPPDSSYL 572
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREG 88
G+N+++ C ++ +P P WR G
Sbjct: 573 ---SGANLNLSCHSASNPSPQYSWRING 597
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 18/90 (20%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSS-- 58
+ V+R +Y C N V S ++L V LY PD PT S
Sbjct: 168 LFNVTRNDTASYKCETQNPVSARRSDSVILNV-------LY------GPDA---PTISPL 211
Query: 59 DIMVREGSNVSMRCAASGSPPPSIMWRREG 88
+ R G N+++ C A+ +PP W G
Sbjct: 212 NTSYRSGENLNLSCHAASNPPAQYSWFVNG 241
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ V+R +G Y C N + S ++L V LY P D P S
Sbjct: 346 LLSVTRNDVGPYECGIQNELSVDHSDPVILNV-------LY-----GPDDPTISP--SYT 391
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREGG 89
R G N+S+ C A+ +PP W +G
Sbjct: 392 YYRPGVNLSLSCHAASNPPAQYSWLIDGN 420
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 11/115 (9%)
Query: 12 YLCIASNGVPP-SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSM 70
Y C+A N V +V ++ ++ + Q S P+I P +V +M
Sbjct: 79 YECVAQNSVGEITVHAKLTVLREDQLPSGF--------PNIDMGPQLK--VVERTRTATM 128
Query: 71 RCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECIS 125
CAASG+P P I W ++ + ++ N + + Q+ + E Q EC++
Sbjct: 129 LCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVA 183
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF 96
T PP + P D + G S C A+G P P + W ++G ++ + F
Sbjct: 2 TGEEPPRFIKEP--KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRF 52
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 11/115 (9%)
Query: 12 YLCIASNGVPP-SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSM 70
Y C+A N V +V ++ ++ + Q S P+I P +V +M
Sbjct: 79 YECVAQNSVGEITVHAKLTVLREDQLPSGF--------PNIDMGPQLK--VVERTRTATM 128
Query: 71 RCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECIS 125
CAASG+P P I W ++ + ++ N + + Q+ + E Q EC++
Sbjct: 129 LCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVA 183
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF 96
T PP + P D + G S C A+G P P + W ++G ++ + F
Sbjct: 2 TGEEPPRFIKEP--KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRF 52
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWR-REGG--EMITNS 95
PDI + S + EG + M C + G P P MWR +E G E I+NS
Sbjct: 93 PDITGHKRSEN--KNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNS 140
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 10 GAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVS 69
G Y C A+NGV +V L V+ M P I P + I+ EG
Sbjct: 75 GIYCCTANNGVGGAVESCGALQVK-------------MKPKITRPPINVKII--EGLKAV 119
Query: 70 MRCAASGSPPPSIMWRREGGEMITNS 95
+ C G+P PS+ W + + NS
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALRENS 145
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVP 101
PP L P + V G+ ++C G PPP ++W + GG+ + S + P
Sbjct: 14 PPCFLRRPRP--VRVVSGAEAELKCVVLGEPPPVVVWEK-GGQQLAASERLSFP 64
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 57 SSDIMVREGSNVSMRCAASGSPPPSIMWRREG 88
S + G ++ C ASGSP P+I W R G
Sbjct: 11 SFNATAERGEEMTFSCRASGSPEPAISWFRNG 42
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 17/77 (22%)
Query: 10 GAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVS 69
G Y+C A+N + Q F ++++ P I+ + E V+
Sbjct: 71 GPYVCRATNKAGED---------EKQAFLQVFV-----QPHIIQLKNET---TYENGQVT 113
Query: 70 MRCAASGSPPPSIMWRR 86
+ C A G P P I W+R
Sbjct: 114 LVCDAEGEPIPEITWKR 130
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+++ IL P S + V EG + C G P P++ W R+G + T++
Sbjct: 11 TTLAARILTKPRS--MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA 59
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLV 120
+V +M CAASG+P P I W ++ + ++ N + + Q+ + E Q
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGK 178
Query: 121 LECIS 125
EC++
Sbjct: 179 YECVA 183
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF 96
T PP + P D + G S C A+G P P + W ++G ++ + F
Sbjct: 2 TGESPPVFIKKPV--DQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRF 52
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMI 92
D+ + G + C G P P I W R G E+I
Sbjct: 15 KDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELI 49
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 17/101 (16%)
Query: 1 MTEVSREHMGAYLCIASNGVPP-SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
MTE +E G Y CIA+N V S +++L Q+ YP
Sbjct: 68 MTE-EQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHP--------------GYPLKEK 112
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV 100
GS + + G P P++ W G +++ NS N T+
Sbjct: 113 YYGAVGSTLRLHVMYIGRPVPAMTWFH-GQKLLQNSENITI 152
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEM 91
+ V + V RC A+G+P PSI W + G E
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREF 164
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEM 91
+ V + V RC A+G+P PSI W + G E
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSISWLKNGREF 56
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 63 REGSNVSMRCAASGSPPPSIMWRREGGEMI 92
+EG + + C S PP+I+W+ +G ++I
Sbjct: 14 KEGEDAVIVCDVVSSLPPTIIWKHKGRDVI 43
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLV 120
+V + +M CAA G+P P I W ++ + + N + + Q+ + E Q
Sbjct: 119 VVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGK 178
Query: 121 LECIS 125
EC++
Sbjct: 179 YECVA 183
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 65 GSNVSMRCAASGSPPPSIMWRREGGEMITNSFN 97
G S C A+G P P I W ++G ++ + F
Sbjct: 21 GGVASFVCQATGEPKPRITWMKKGKKVSSQRFE 53
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 51 ILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
IL P S + V EG + C G P P++ W R+G + T++
Sbjct: 11 ILTKPRS--MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA 53
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 41 YIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITN 94
Y P L PT+ I + + C ASG+P P I+W R G + +
Sbjct: 2 YFQGDQKGPVFLKEPTNR-IDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGD 54
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 59 DIMVREGSNVSMRCAASGSPPPSIMWRRE 87
D+ V EGS C G P P +MW ++
Sbjct: 50 DMEVVEGSAARFDCKVEGYPDPEVMWFKD 78
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 64 EGSNVSMRCAASGSPPPSIMWRRE 87
EG+ +++ C +PP SI WRR+
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRD 137
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 64 EGSNVSMRCAASGSPPPSIMWRR 86
E V++ C A G P P I W+R
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKR 36
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 64 EGSNVSMRCAASGSPPPSIMWRRE 87
EG+ +++ C +PP SI WRR+
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRD 137
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 64 EGSNVSMRCAASGSPPPSIMWRR 86
E V++ C A G P P I W+R
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKR 36
>pdb|1DBA|L Chain L, Three-Dimensional Structure Of An Anti-Steroid Fab' And
Progesterone-Fab' Complex
pdb|1DBB|L Chain L, Three-Dimensional Structure Of An Anti-Steroid Fab' And
Progesterone-Fab' Complex
pdb|1DBJ|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
pdb|1DBK|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
pdb|1DBM|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
pdb|2DBL|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
Length = 216
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
++ V E +G Y C S+ VPP+ +KL I + P + +P SS+
Sbjct: 80 ISRVEAEDLGIYFCSQSSHVPPTFGGG----------TKLEIKRADAAPTVSIFPPSSEQ 129
Query: 61 MVREGSNVSMRCAASGSPPPSI--MWRREGGE 90
+ G++V C + P I W+ +G E
Sbjct: 130 LTSGGASVV--CFLNNFYPKDINVKWKIDGSE 159
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 59 DIMVREGSNVSMRCAASGSPPPSIMWRRE 87
D+ V EGS C G P P +MW ++
Sbjct: 50 DMDVVEGSAARFDCKVEGYPDPEVMWFKD 78
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 29.3 bits (64), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQC---QYFSKLYIYTSSMPPDILDYPTSSDI 60
V + G Y+C +N S+ L V C + F + S I PTS +
Sbjct: 72 VHVKDAGFYVCRVNNNFTFEFSQWSQLDV-CDIPESFQRSVDGVSESKLQICVEPTSQKL 130
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRR 86
M GS + ++C A GSP P W +
Sbjct: 131 M--PGSTLVLQCVAVGSPIPHYQWFK 154
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 29.3 bits (64), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN 98
+ ++EG +++ C G PPP + W + + ++ N
Sbjct: 232 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCN 270
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 29.3 bits (64), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPS 108
P L PT+ I + + C ASG+P P I+W R G + + VP + +I S
Sbjct: 4 PVFLKEPTNR-IDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGD-----VPGLRQISS 57
Query: 109 Q 109
Sbjct: 58 D 58
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 29.3 bits (64), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITN 94
P L PT+ I + + C ASG+P P I+W R G + +
Sbjct: 4 PVFLKEPTNR-IDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGD 48
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 65 GSNVSMRCAASGSPPPSIMWRREG 88
G +V + C A GSP P I W EG
Sbjct: 36 GGSVELHCEAVGSPVPEIQWWFEG 59
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 29.3 bits (64), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRR 86
+ ++EG +++ C G PPP + W +
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLK 153
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 29.3 bits (64), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 65 GSNVSMRCAASGSPPPSIMWRREG 88
G +V + C A GSP P I W EG
Sbjct: 36 GGSVELHCEAVGSPVPEIQWWFEG 59
>pdb|2DQT|L Chain L, High Resolution Crystal Structure Of The Complex Of The
Hydrolytic Antibody Fab 6d9 And A Transition-State
Analog
pdb|2DQU|L Chain L, Crystal Form Ii: High Resolution Crystal Structure Of The
Complex Of The Hydrolytic Antibody Fab 6d9 And A
Transition-State Analog
pdb|2DTM|L Chain L, Thermodynamic And Structural Analyses Of Hydrolytic
Mechanism By Catalytic Antibodies
Length = 219
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
++ V E +G Y C + VPP+ +KL I + P + +P SS+
Sbjct: 80 ISRVEAEDLGVYYCFQGSHVPPTFGGG----------TKLEIKRADAAPTVSIFPPSSEQ 129
Query: 61 MVREGSNVSMRCAASGSPPPSI--MWRREGGE 90
+ G++V C + P I W+ +G E
Sbjct: 130 LTSGGASVV--CFLNNFYPKDINVKWKIDGSE 159
>pdb|1IGF|L Chain L, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
pdb|1IGF|M Chain M, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
pdb|2IGF|L Chain L, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
Length = 219
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
++ V E +G Y C + VPP+ +KL I + P + +P SS+
Sbjct: 80 ISRVEAEDLGVYYCFQGSHVPPTFGGG----------TKLEIKRADAAPTVSIFPPSSEQ 129
Query: 61 MVREGSNVSMRCAASGSPPPSI--MWRREGGE 90
+ G++V C + P I W+ +G E
Sbjct: 130 LTSGGASVV--CFLNNFYPKDINVKWKIDGSE 159
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From
The Neural Cell Adhesion Molecule
Length = 107
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG 88
++PP + ++ + +V++ C A G P P++ W ++G
Sbjct: 9 NVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDG 51
>pdb|3TF7|C Chain C, 42f3 Ql9H2-Ld Complex
pdb|3TF7|G Chain G, 42f3 Ql9H2-Ld Complex
pdb|3TF7|I Chain I, 42f3 Ql9H2-Ld Complex
pdb|3TF7|K Chain K, 42f3 Ql9H2-Ld Complex
Length = 256
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWR----REGGEMITNSFNNTVPPIVK 105
+ V EG+++ +RC S S P + W R+G +M+ ++ P+V+
Sbjct: 13 VTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSG--DPVVQ 60
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV 100
+ EG V+ C +G+P P I W ++G ++ S + T+
Sbjct: 19 IFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTI 57
>pdb|1I9I|L Chain L, Native Crystal Structure Of The Recombinant Monoclonal
Wild Type Anti-Testosterone Fab Fragment
pdb|1I9J|L Chain L, Testosterone Complex Structure Of The Recombinant
Monoclonal Wild Type Anti-Testosterone Fab Fragment
Length = 219
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
++ V E +G Y C + VPP+ +KL I + P + +P SS+
Sbjct: 80 ISRVEAEDLGVYYCFQGSHVPPTFGGG----------TKLEIKRADAAPTVSIFPPSSEQ 129
Query: 61 MVREGSNVSMRCAASGSPPPSI--MWRREGGE 90
+ G+ S+ C + P I W+ +G E
Sbjct: 130 LTSGGA--SVVCFLNNFYPKDINVKWKIDGSE 159
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV 100
+ EG V+ C +G+P P I W ++G ++ S + T+
Sbjct: 20 IFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTI 58
>pdb|4GKZ|A Chain A, Ha1.7, A Mhc Class Ii Restricted Tcr Specific For
Haemagglutinin
Length = 202
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMW 84
S + V EG+ V +RC S S PP + W
Sbjct: 9 SHVSVSEGALVLLRCNYSSSVPPYLFW 35
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin
Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin
Complex
Length = 225
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 68 VSMRCAASGSPPPSIMWRREGGEM 91
V +C +SG+P P++ W + G E
Sbjct: 34 VKFKCPSSGTPQPTLRWLKNGKEF 57
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 11 AYLCIASNGVPPSVSKRIMLIVQCQYFS-----KLYIYTSSMPPDILDYPTSSDIMVREG 65
A I + V PS IV+ +Y S +L + S IL ++ V G
Sbjct: 71 ATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALG 130
Query: 66 SNVSMRCAASGSPPPSIMWRRE 87
SNV C P P I W +
Sbjct: 131 SNVEFMCKVYSDPQPHIQWLKH 152
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 91
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 55 PTSSDIMVREGSNVSMRCAASGSPPPSIMWRR 86
PTS +M GS + ++C A GSP P W +
Sbjct: 10 PTSQKLM--PGSTLVLQCVAVGSPIPHYQWFK 39
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 59 DIMVREGSNVSMRCAASGSPPPSIMWRREG 88
D V EG + ++C+ G+P P I W G
Sbjct: 20 DCAVIEGQDFVLQCSVRGTPVPRITWLLNG 49
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 15/91 (16%)
Query: 7 EHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGS 66
E G Y C A++ + ++L + + KL P + ++G
Sbjct: 68 EDAGIYRCQATDAKGQTQEATVVL----EIYQKLTFREVVSPQEF-----------KQGE 112
Query: 67 NVSMRCAASGSPPPSIMWRREGGEMITNSFN 97
+ + C S SP P++ W E+ T S N
Sbjct: 113 DAEVVCRVSSSPAPAVSWLYHNEEVTTISDN 143
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 16/91 (17%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
M +S E G Y C A N + S + + + PP P +
Sbjct: 159 MYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE--------------PPVFRKKPHPVET 204
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREGGEM 91
+ +G++V + C G+PP + W ++ E+
Sbjct: 205 L--KGADVHLECELQGTPPFQVSWHKDKREL 233
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain
Of Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain
Of Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 68 VSMRCAASGSPPPSIMWRREGGEM 91
V +C +SG+P P++ W + G E
Sbjct: 35 VKFKCPSSGTPQPTLRWLKNGKEF 58
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 11 AYLCIASNGVPPSVSKRIMLIVQCQYFS-----KLYIYTSSMPPDILDYPTSSDIMVREG 65
A I + V PS IV+ +Y S +L + S IL ++ V G
Sbjct: 72 ATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALG 131
Query: 66 SNVSMRCAASGSPPPSIMWRRE 87
SNV C P P I W +
Sbjct: 132 SNVEFMCKVYSDPQPHIQWLKH 153
>pdb|1FYT|D Chain D, Crystal Structure Of A Complex Of A Human AlphaBETA-T
Cell Receptor, Influenza Ha Antigen Peptide, And Mhc
Class Ii Molecule, Hla-Dr1
pdb|1J8H|D Chain D, Crystal Structure Of A Complex Of A Human AlphaBETA-T
Cell Receptor, Influenza Ha Antigen Peptide, And Mhc
Class Ii Molecule, Hla-Dr4
Length = 212
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMW 84
S + V EG+ V +RC S S PP + W
Sbjct: 8 SHVSVSEGALVLLRCNYSSSVPPYLFW 34
>pdb|1IGI|L Chain L, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
pdb|1IGJ|A Chain A, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
pdb|1IGJ|C Chain C, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
Length = 219
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
++ V E +G Y C + VPP+ +KL I + P + +P SS+
Sbjct: 80 ISRVEAEDLGIYFCSQTTHVPPTFGGG----------TKLEIKRADAAPTVSIFPPSSEQ 129
Query: 61 MVREGSNVSMRCAASGSPPPSI--MWRREGGE 90
+ G+ S+ C + P I W+ +G E
Sbjct: 130 LTSGGA--SVVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1L7T|L Chain L, Crystal Structure Analysis Of The Anti-Testosterone Fab
Fragment
pdb|1VPO|L Chain L, Crystal Structure Analysis Of The Anti-testosterone Fab In
Complex With Testosterone
Length = 219
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 14/100 (14%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
++ V E +G Y C + VPP +KL I + P + +P SS+
Sbjct: 80 ISRVEAEDLGVYYCFDGSTVPPKFGGG----------TKLEIKRADAAPTVSIFPPSSEQ 129
Query: 61 MVREGSNVSMRCAASGSPPPSI--MWRREGGEMITNSFNN 98
+ G++V C + P I W+ +G E N+
Sbjct: 130 LTSGGASVV--CFLNNFYPKDINVKWKIDGSERQNGVLNS 167
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 66 SNVSMRCAASGSPPPSIMWRREGGEM 91
+ V RC A G+P P+ W + G E
Sbjct: 27 NTVKFRCPAGGNPXPTXRWLKNGKEF 52
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 64 EGSNVSMRCAASGSPPPSIMWRRE-GGEMITNSFNNT 99
+G ++ C A GSP PS+ W E G + SF ++
Sbjct: 132 QGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHS 168
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 16/91 (17%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
M +S E G Y C A N + S + + + PP P +
Sbjct: 159 MYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE--------------PPVFRKKPHPVET 204
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREGGEM 91
+ +G++V + C G+PP + W ++ E+
Sbjct: 205 L--KGADVHLECELQGTPPFQVSWHKDKREL 233
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain
Of Fgfr2b Harboring The A172f Pfeiffer Syndrome
Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain
Of Fgfr2b Harboring The A172f Pfeiffer Syndrome
Mutation
Length = 231
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 68 VSMRCAASGSPPPSIMWRREGGEM 91
V RC A G+P P++ W + G E
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEF 60
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 68 VSMRCAASGSPPPSIMWRREGGEM 91
V +C +SG+P P++ W + G E
Sbjct: 34 VKFKCPSSGTPNPTLRWLKNGKEF 57
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 11 AYLCIASNGVPPSVSKRIMLIVQCQYFS-----KLYIYTSSMPPDILDYPTSSDIMVREG 65
A I + V PS IV+ +Y S +L + S IL ++ V G
Sbjct: 71 ATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALG 130
Query: 66 SNVSMRCAASGSPPPSIMWRRE 87
SNV C P P I W +
Sbjct: 131 SNVEFMCKVYSDPQPHIQWLKH 152
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 68 VSMRCAASGSPPPSIMWRREGGEM 91
V RC A G+P P+ W + G E
Sbjct: 36 VKFRCPAGGNPXPTXRWLKNGKEF 59
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 66 SNVSMRCAASGSPPPSIMWRREGGEM 91
+ V RC A G+P P++ W + G E
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKNGKEF 52
>pdb|3E2H|B Chain B, Structure Of The M67 High-Affinity Mutant Of The 2c Tcr In
Complex With LdQL9
Length = 109
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWR----REGGEMITNSFNNTVPPIVK 105
+ V EG+++ +RC S S P + W R+G +++ ++ P+V+
Sbjct: 9 VTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSGD--PVVQ 56
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 66 SNVSMRCAASGSPPPSIMWRREGGEM 91
+ V RC A G+P P++ W + G E
Sbjct: 25 NTVKFRCPAGGNPMPTMRWLKNGKEF 50
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
Length = 220
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 66 SNVSMRCAASGSPPPSIMWRREGGEM 91
+ V RC A G+P P++ W + G E
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKNGKEF 52
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin
Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin
Complex
Length = 219
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 66 SNVSMRCAASGSPPPSIMWRREGGEM 91
+ V RC A G+P P++ W + G E
Sbjct: 26 NTVKFRCPAGGNPMPTMRWLKNGKEF 51
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 65 GSNVSMRCAASGSPPPSIMWRREGGEM 91
+ V RC A G+P P++ W + G E
Sbjct: 23 ANTVKFRCPAGGNPMPTMRWLKNGKEF 49
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain
Of Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 68 VSMRCAASGSPPPSIMWRREGGEM 91
V RC A G+P P++ W + G E
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEF 60
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 68 VSMRCAASGSPPPSIMWRREGGEM 91
V RC A G+P P++ W + G E
Sbjct: 30 VKFRCPAGGNPMPTMRWLKNGKEF 53
>pdb|2E7L|A Chain A, Structure Of A High-Affinity Mutant Of The 2c Tcr In
Complex With LdQL9
pdb|2E7L|B Chain B, Structure Of A High-Affinity Mutant Of The 2c Tcr In
Complex With LdQL9
Length = 113
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWR----REGGEMITNSFNNTVPPIVK 105
+ V EG+++ +RC S S P + W R+G +++ ++ P+V+
Sbjct: 10 VTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSGD--PVVQ 57
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
Length = 220
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 66 SNVSMRCAASGSPPPSIMWRREGGEM 91
+ V RC A G+P P++ W + G E
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKNGKEF 52
>pdb|2ICW|I Chain I, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
pdb|2ICW|K Chain K, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
Length = 110
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWR----REGGEMITNSFNNTVPPIVK 105
+ V EG+++ +RC S S P + W R+G +++ ++ P+V+
Sbjct: 10 VTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSG--DPVVQ 57
>pdb|3TPU|A Chain A, 42f3 P5e8H2-Ld Complex
pdb|3TPU|C Chain C, 42f3 P5e8H2-Ld Complex
pdb|3TPU|G Chain G, 42f3 P5e8H2-Ld Complex
pdb|3TPU|M Chain M, 42f3 P5e8H2-Ld Complex
Length = 211
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWR----REGGEMI 92
+ V EG+++ +RC S S P + W R+G +M+
Sbjct: 14 VTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQML 50
>pdb|3TJH|C Chain C, 42f3-P3a1H2-Ld Complex
Length = 226
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWR----REGGEMITNSFNNTVPPIVK 105
+ V EG+++ +RC S S P + W R+G +M+ ++ P+V+
Sbjct: 19 VTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGD--PVVQ 66
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 68 VSMRCAASGSPPPSIMWRREGGEM 91
V RC A G+P P++ W + G E
Sbjct: 31 VKFRCPAGGNPMPTMRWLKNGKEF 54
>pdb|3TFK|C Chain C, 42f3-P4b10H2-Ld
Length = 212
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWR----REGGEMI 92
+ V EG+++ +RC S S P + W R+G +M+
Sbjct: 15 VTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQML 51
>pdb|2OI9|B Chain B, Structure Of The 2cLDQL9 ALLOGENEIC COMPLEX
Length = 113
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWR----REGGEMITNSFNNTVPPIVK 105
+ V EG+++ +RC S S P + W R+G +++ ++ P+V+
Sbjct: 10 VTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSGD--PVVQ 57
>pdb|3E3Q|D Chain D, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|C Chain C, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|DD Chain d, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|I Chain I, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|M Chain M, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|R Chain R, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|V Chain V, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|Z Chain Z, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
Length = 109
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWR----REGGEMITNSFNNTVPPIVK 105
+ V EG+++ +RC S S P + W R+G +++ ++ P+V+
Sbjct: 9 VTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSGD--PVVQ 56
>pdb|1S16|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda
Subunit Complexed With Adpnp
pdb|1S16|B Chain B, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda
Subunit Complexed With Adpnp
Length = 390
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 81 SIMWRREGGEMITNSFNNTVPPI 103
+++W EGGE++T S+ N +P +
Sbjct: 252 ALLWLPEGGELLTESYVNLIPTM 274
>pdb|1TZ1|A Chain A, Solution Structure Of The Pb1 Domain Of Cdc24p (Short
Form)
Length = 80
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 92 ITNSFNNTVPPIVKIPSQ-------LIGAHEGQQLVLECISEAYPKSVN 133
I+N+ NN + PI KI Q ++G+ E + E ++E K +N
Sbjct: 28 ISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLAENNEKFLN 76
>pdb|1JGV|L Chain L, Structural Basis For Disfavored Elimination Reaction In
Catalytic Antibody 1d4
pdb|1JGU|L Chain L, Structural Basis For Disfavored Elimination Reaction In
Catalytic Antibody 1d4
Length = 220
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
++ V E +G Y C S VPP + +KL + + P + +P SS+
Sbjct: 80 ISRVEAEDLGVYFCSQSTHVPP---------LTFGAGTKLELKRADAAPTVSIFPPSSEQ 130
Query: 61 MVREGSNVSMRCAASGSPPPSI--MWRREGGE 90
+ G++V C + P I W+ +G E
Sbjct: 131 LTSGGASVV--CFLNNFYPKDINVKWKIDGSE 160
>pdb|2OZ4|L Chain L, Structural Plasticity In Igsf Domain 4 Of Icam-1 Mediates
Cell Surface Dimerization
Length = 214
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 12/96 (12%)
Query: 50 DILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMW---RREGGEMITNSFNNTVPPIVKI 106
DIL + + + V G VS C AS S SI W R G + + + I I
Sbjct: 1 DILLTQSPAILSVSPGERVSFSCRASQSIGTSIHWFQQRINGSPRLLIEYAS--ESISGI 58
Query: 107 PSQLIGAHEGQQLVL-------ECISEAYPKSVNYW 135
PS+ G+ G L E I++ Y + N W
Sbjct: 59 PSRFSGSGSGTDFTLTINSVESEDIADYYCQQSNVW 94
>pdb|1PQS|A Chain A, Solution Structure Of The C-Terminal Opca Domain Of
Ycdc24p
Length = 77
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 92 ITNSFNNTVPPIVKIPSQ-------LIGAHEGQQLVLECISEAYPKSVN 133
I+N+ NN + PI KI Q ++G+ E + E ++E K +N
Sbjct: 25 ISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLAENNEKFLN 73
>pdb|3RA7|L Chain L, Bispecific Digoxigenin Binding Antibodies For Targeted
Payload Delivery
pdb|3RA7|M Chain M, Bispecific Digoxigenin Binding Antibodies For Targeted
Payload Delivery
Length = 214
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+T + RE + Y C S +PP+ +KL I + P + +P SS+
Sbjct: 75 ITNLEREDIATYFCQQSITLPPTFGGG----------TKLEIKRADAAPTVSIFPPSSEQ 124
Query: 61 MVREGSNVSMRCAASGSPPPSI--MWRREGGE 90
+ G++V C + P I W+ +G E
Sbjct: 125 LTSGGASVV--CFLNNFYPKDINVKWKIDGSE 154
>pdb|2Z4Q|A Chain A, Crystal Structure Of A Murine Antibody Fab 528
Length = 219
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
++ V E +G Y C + +PP+ +KL I + P + +P SS+
Sbjct: 80 ISRVEAEDLGIYYCFQGSHIPPTFGGG----------TKLEIKRADAAPTVSIFPPSSEQ 129
Query: 61 MVREGSNVSMRCAASGSPPPSI--MWRREGGE 90
+ G++V C + P I W+ +G E
Sbjct: 130 LTSGGASVV--CFLNNFYPRDINVKWKIDGSE 159
>pdb|4DKD|C Chain C, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
Length = 292
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 55 PTSSDIMVREGSNVSMRCAASGS----PPPSIMWR--REGGEMITNSFNNT 99
P+ +++V+ G+ V++RC +GS PPS W +G I ++ N T
Sbjct: 9 PSVPELVVKPGATVTLRCVGNGSVEWDGPPSPHWTLYSDGSSSILSTNNAT 59
>pdb|2GJZ|L Chain L, Structure Of Catalytic Elimination Antibody 13g5 From A
Crystal In Space Group P2(1)
pdb|2GJZ|A Chain A, Structure Of Catalytic Elimination Antibody 13g5 From A
Crystal In Space Group P2(1)
pdb|2GK0|L Chain L, Structure Of Catalytic Elimination Antibody 13g5 From A
Twinned Crystal In Space Group C2
pdb|2GK0|A Chain A, Structure Of Catalytic Elimination Antibody 13g5 From A
Twinned Crystal In Space Group C2
Length = 217
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ V E +G Y C + +PP+ +KL I + P + +P SS+
Sbjct: 80 INRVEAEDLGVYYCFQGSHLPPTFGGG----------TKLEIKRADAAPTVSIFPPSSEQ 129
Query: 61 MVREGSNVSMRCAASGSPPPSI--MWRREGGE 90
+ G++V C + P I W+ +G E
Sbjct: 130 LTSGGASVV--CFLNNFYPKDINVKWKIDGSE 159
>pdb|1Q1O|A Chain A, Solution Structure Of The Pb1 Domain Of Cdc24p (Long Form)
Length = 98
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 92 ITNSFNNTVPPIVKIPSQ-------LIGAHEGQQLVLECISEAYPKSVN 133
I+N+ NN + PI KI Q ++G+ E + E ++E K +N
Sbjct: 46 ISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLAENNEKFLN 94
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From
Mouse
Length = 212
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 54 YPTSSDIMVREGSNVSMRCAASGSPPPSIMWR 85
Y SD+ V E ++ + C SG P + W+
Sbjct: 5 YTAQSDVQVPENESIKLTCTYSGFSSPRVEWK 36
>pdb|4F2M|B Chain B, Crystal Structure Of A Tgev Coronavirus Spike Fragment In
Complex With The Tgev Neutralizing Monoclonal Antibody
1af10
pdb|4F2M|D Chain D, Crystal Structure Of A Tgev Coronavirus Spike Fragment In
Complex With The Tgev Neutralizing Monoclonal Antibody
1af10
Length = 214
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 22/101 (21%)
Query: 50 DILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVK---- 105
DIL + + + V G VS+ C AS S SI W ++ N + P++K
Sbjct: 1 DILLTQSPAILSVSPGERVSLSCRASQSIGTSIHWYQQ-------RTNGSPRPLIKYASE 53
Query: 106 ----IPSQLIGAHEGQQLVL-------ECISEAYPKSVNYW 135
IPS+ G+ G L E I++ + + + W
Sbjct: 54 SISGIPSRFSGSGSGTDFTLNINSVESEDIADYFCQQTDSW 94
>pdb|1CL7|L Chain L, Anti Hiv1 Protease Fab
Length = 216
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
++ V E +G Y C + PP+ +KL I + P + +P SS+
Sbjct: 80 ISRVEAEDLGIYYCFQGSHFPPTFGGG----------TKLEIKRADAAPTVSIFPPSSEQ 129
Query: 61 MVREGSNVSMRCAASGSPPPSI--MWRREGGE 90
+ G++V C + P I W+ +G E
Sbjct: 130 LTSGGASVV--CFLNNFYPKDINVKWKIDGSE 159
>pdb|3MJG|X Chain X, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
pdb|3MJG|Y Chain Y, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
Length = 289
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 61 MVREGSNVSMRCAASGSPPPSIMW---RREGGEMI 92
+VR+G N+++ C G+ + W R+E G ++
Sbjct: 192 VVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLV 226
>pdb|2C1O|A Chain A, Enaiihis Fab Fragment In The Free Form
pdb|2C1O|L Chain L, Enaiihis Fab Fragment In The Free Form
Length = 254
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
++ V E +G Y C+ + PP+ +KL + + P + +P SS+
Sbjct: 117 ISRVEAEDLGIYYCVQGSHFPPTFGAG----------TKLELKRADAAPTVSIFPPSSEQ 166
Query: 61 MVREGSNVSMRCAASGSPPPSI--MWRREGGE 90
+ G++V C + P I W+ +G E
Sbjct: 167 LTSGGASVV--CFLNNFYPKDINVKWKIDGSE 196
>pdb|4HPY|L Chain L, Crystal Structure Of Rv144-elicited Antibody Ch59 In
Complex With V2 Peptide
Length = 215
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 94 NSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREK 139
+S+ T PP V + GQ + C +A PK+ YW ++K
Sbjct: 1 DSYELTQPPSVSV-------SPGQTARITCSGDALPKNYAYWYQQK 39
>pdb|2C1P|A Chain A, Fab-Fragment Of Enantioselective Antibody Complexed With
Finrozole
pdb|2C1P|L Chain L, Fab-Fragment Of Enantioselective Antibody Complexed With
Finrozole
Length = 218
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
++ V E +G Y C+ + PP+ +KL + + P + +P SS+
Sbjct: 80 ISRVEAEDLGIYYCVQGSHFPPTFGAG----------TKLELKRADAAPTVSIFPPSSEQ 129
Query: 61 MVREGSNVSMRCAASGSPPPSI--MWRREGGE 90
+ G++V C + P I W+ +G E
Sbjct: 130 LTSGGASVV--CFLNNFYPKDINVKWKIDGSE 159
>pdb|1ZVU|A Chain A, Structure Of The Full-Length E. Coli Parc Subunit
Length = 716
Score = 26.6 bits (57), Expect = 5.2, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 53 DYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIG 112
DYPT ++I+ + GS +W++E G ++ I +P Q+ G
Sbjct: 188 DYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVV----------ISALPHQVSG 237
Query: 113 AHEGQQLVLECISEAYP 129
A +Q+ + ++ P
Sbjct: 238 ARVLEQIAAQMRNKKLP 254
>pdb|3OJD|A Chain A, Anti-Indolicidin Monoclonal Antibody V2d2 (Fab Fragment)
Length = 214
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 50 DILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMW-RREGGEMITNSFNNTVPPIVKIPS 108
DI+ T + + G +V++ C ASG+ + W +++GG+ N +PS
Sbjct: 1 DIVMTQTPASLSASVGESVTITCKASGNIHNYLAWYQQKGGKSPQLLVFNASTLADGVPS 60
Query: 109 QLIGAHEGQQLVLE 122
+ G+ G Q L+
Sbjct: 61 RFSGSGSGTQYSLK 74
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN 98
+ EG+ V++ C P +I W R+G + +++++N
Sbjct: 28 VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSN 66
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human
Apep-1
Length = 99
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 59 DIMVREGSNVSMRCAASGSPPPSIMWRR 86
D VREG +V M G P P + W R
Sbjct: 14 DQSVREGQDVIMSIRVQGEPKPVVSWLR 41
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREG 88
+ V +G V + C+ G P I W ++G
Sbjct: 12 LTVSQGQPVKLNCSVEGXEEPDIQWVKDG 40
>pdb|1FOR|H Chain H, Structure Determination Of An Fab Fragment That
Neutralizes Human Rhinovirus And Analysis Of The
Fab-Virus Complex
Length = 219
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 72 CAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAY 128
CA SG+ P ++ + +G + +S T P + + + + G G + L C+ + Y
Sbjct: 96 CARSGNYPYAMDYWGQGTSVTVSSAKTTAPSVYPL-APVCGGTTGSSVTLGCLVKGY 151
>pdb|1K4D|B Chain B, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|B Chain B, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|L Chain L, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|A Chain A, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|A Chain A, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|A Chain A, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|1S5H|A Chain A, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
pdb|2BOB|B Chain B, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|B Chain B, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|1ZWI|B Chain B, Structure Of Mutant Kcsa Potassium Channel
pdb|2ATK|B Chain B, Structure Of A Mutant Kcsa K+ Channel
pdb|2H8P|B Chain B, Structure Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HG5|B Chain B, Cs+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HJF|B Chain B, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2IH1|B Chain B, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|B Chain B, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2DWD|B Chain B, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|B Chain B, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
pdb|2HVJ|B Chain B, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|B Chain B, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|B Chain B, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|B Chain B, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|2NLJ|A Chain A, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
pdb|2P7T|B Chain B, Crystal Structure Of Kcsa Mutant
pdb|2JK5|B Chain B, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|B Chain B, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
pdb|3GB7|B Chain B, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|B Chain B, Potassium Channel Kcsa-Fab Complex In Li+ And K+
pdb|3F5W|B Chain B, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|B Chain B, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|B Chain B, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|B Chain B, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|B Chain B, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|B Chain B, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3HPL|B Chain B, Kcsa E71h-F103a Mutant In The Closed State
pdb|3FB7|B Chain B, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
pdb|3OR6|B Chain B, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
pdb|3OR7|B Chain B, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
pdb|3OGC|B Chain B, Kcsa E71a Variant In Presence Of Na+
pdb|3STL|B Chain B, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
pdb|3STZ|B Chain B, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 212
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 36/96 (37%), Gaps = 12/96 (12%)
Query: 50 DILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMW---RREGGEMITNSFNNTVPPIVKI 106
DIL + + + V G VS C AS S I W R G + + I I
Sbjct: 1 DILLTQSPAILSVSPGERVSFSCRASQSIGTDIHWYQQRTNGSPRLLIKY--ASESISGI 58
Query: 107 PSQLIGAHEGQQLVL-------ECISEAYPKSVNYW 135
PS+ G+ G L E I+ Y + N W
Sbjct: 59 PSRFSGSGSGTDFTLSINSVESEDIANYYCQQSNRW 94
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 54 YPTSSDIMVREGSNVSMRCAASGSPPPSIMWR 85
YP + R +V+ ++SG P SI W+
Sbjct: 125 YPCGKQTLERRKRSVAQATSSSGEAPDSITWK 156
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 13/85 (15%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
V+R G Y C AS+G+ ++K+ + ++ P S +
Sbjct: 167 VTRSDQGLYTCAASSGL---MTKK----------NSTFVRVHEKPFVAFGSGMESLVEAT 213
Query: 64 EGSNVSMRCAASGSPPPSIMWRREG 88
G V + G PPP I W + G
Sbjct: 214 VGERVRIPAKYLGYPPPEIKWYKNG 238
>pdb|2HFE|B Chain B, Rb+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
Length = 211
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 36/96 (37%), Gaps = 12/96 (12%)
Query: 50 DILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMW---RREGGEMITNSFNNTVPPIVKI 106
DIL + + + V G VS C AS S I W R G + + I I
Sbjct: 1 DILLTQSPAILSVSPGERVSFSCRASQSIGTDIHWYQQRTNGSPRLLIKY--ASESISGI 58
Query: 107 PSQLIGAHEGQQLVL-------ECISEAYPKSVNYW 135
PS+ G+ G L E I+ Y + N W
Sbjct: 59 PSRFSGSGSGTDFTLSINSVESEDIANYYCQQSNRW 94
>pdb|1GXE|A Chain A, Central Domain Of Cardiac Myosin Binding Protein C
Length = 139
Score = 25.8 bits (55), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 48 PPDI-LDYPTS--SDIMVREGSNVSMRCAASGSPPPSIMWRR 86
PP I LD P I+V G+ + + SG P P+++W++
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQK 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,587,839
Number of Sequences: 62578
Number of extensions: 171650
Number of successful extensions: 1443
Number of sequences better than 100.0: 153
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1208
Number of HSP's gapped (non-prelim): 275
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)