Query psy16421
Match_columns 151
No_of_seqs 105 out of 1128
Neff 10.8
Searched_HMMs 46136
Date Fri Aug 16 20:52:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.8 5.5E-19 1.2E-23 135.7 11.5 123 1-140 298-465 (1051)
2 KOG4221|consensus 99.8 7.7E-19 1.7E-23 135.3 12.1 138 1-148 197-375 (1381)
3 KOG4194|consensus 99.8 5.2E-19 1.1E-23 128.9 9.1 131 1-146 578-752 (873)
4 KOG3513|consensus 99.7 3.6E-17 7.8E-22 125.9 11.5 130 1-144 390-561 (1051)
5 KOG4222|consensus 99.7 6.4E-17 1.4E-21 124.3 7.7 128 1-144 191-358 (1281)
6 PHA02785 IL-beta-binding prote 99.6 1E-14 2.2E-19 102.9 12.3 127 1-143 86-265 (326)
7 KOG4221|consensus 99.6 3.3E-14 7.1E-19 110.4 12.1 125 6-146 110-282 (1381)
8 KOG4222|consensus 99.4 4E-13 8.7E-18 104.0 7.8 126 1-142 282-461 (1281)
9 cd05771 IgC_Tapasin_R Tapasin- 99.3 2.9E-11 6.3E-16 75.5 8.6 72 1-88 5-78 (139)
10 PHA02826 IL-1 receptor-like pr 99.3 6.6E-11 1.4E-15 79.4 10.2 100 1-127 102-209 (227)
11 KOG4194|consensus 99.2 1.7E-11 3.7E-16 90.4 6.5 79 1-96 673-752 (873)
12 PHA02785 IL-beta-binding prote 99.1 2.8E-10 6E-15 80.5 8.3 78 1-93 181-265 (326)
13 cd05851 Ig3_Contactin-1 Third 98.9 4.1E-09 8.9E-14 60.6 5.4 42 101-142 1-42 (88)
14 cd07693 Ig1_Robo First immunog 98.8 1E-08 2.2E-13 60.0 5.4 44 101-144 1-44 (100)
15 cd05747 Ig5_Titin_like M5, fif 98.8 1.6E-08 3.5E-13 58.6 5.6 45 100-144 2-46 (92)
16 cd05749 Ig2_Tyro3_like Second 98.8 1E-08 2.2E-13 58.0 4.4 39 105-143 2-41 (81)
17 cd05762 Ig8_MLCK Eighth immuno 98.8 2E-08 4.4E-13 58.9 5.8 43 102-144 1-43 (98)
18 PHA02826 IL-1 receptor-like pr 98.8 5.7E-08 1.2E-12 65.3 8.6 36 110-145 138-178 (227)
19 cd05848 Ig1_Contactin-5 First 98.7 3.7E-08 8E-13 57.3 5.3 43 102-144 2-47 (94)
20 cd05722 Ig1_Neogenin First imm 98.7 4.4E-08 9.6E-13 57.1 4.8 42 104-145 2-43 (95)
21 cd04968 Ig3_Contactin_like Thi 98.7 7.7E-08 1.7E-12 55.2 5.6 44 101-144 1-44 (88)
22 cd05850 Ig1_Contactin-2 First 98.6 8.6E-08 1.9E-12 55.8 5.4 42 102-143 2-46 (94)
23 PF07679 I-set: Immunoglobulin 98.6 1.3E-07 2.8E-12 54.3 5.9 43 102-144 1-43 (90)
24 cd05758 Ig5_KIRREL3-like Fifth 98.6 1.4E-07 3E-12 55.3 6.0 44 101-145 2-46 (98)
25 cd07693 Ig1_Robo First immunog 98.6 1.1E-06 2.4E-11 51.2 9.7 77 48-127 1-85 (100)
26 cd05728 Ig4_Contactin-2-like F 98.6 8.4E-08 1.8E-12 54.7 4.5 41 104-144 2-42 (85)
27 cd05737 Ig_Myomesin_like_C C-t 98.6 1.4E-07 2.9E-12 54.7 5.2 37 108-144 8-44 (92)
28 cd04972 Ig_TrkABC_d4 Fourth do 98.6 1.4E-07 3.1E-12 54.4 5.0 38 107-144 6-43 (90)
29 cd05869 Ig5_NCAM-1 Fifth immun 98.6 2.2E-07 4.8E-12 54.3 5.7 42 101-142 2-43 (97)
30 cd05851 Ig3_Contactin-1 Third 98.6 7.2E-07 1.6E-11 51.2 7.7 73 48-127 1-74 (88)
31 cd05894 Ig_C5_MyBP-C C5 immuno 98.6 2.1E-07 4.6E-12 53.2 5.1 36 109-144 3-38 (86)
32 cd05730 Ig3_NCAM-1_like Third 98.5 1.8E-07 3.9E-12 54.4 4.9 44 101-144 1-46 (95)
33 cd05849 Ig1_Contactin-1 First 98.5 2.8E-07 6.1E-12 53.5 5.3 42 102-143 2-46 (93)
34 cd05739 Ig3_RPTP_IIa_LAR_like 98.5 1.6E-07 3.5E-12 51.4 3.9 28 116-143 1-28 (69)
35 cd05745 Ig3_Peroxidasin Third 98.5 1.7E-07 3.6E-12 52.0 3.9 29 115-143 1-29 (74)
36 cd05752 Ig1_FcgammaR_like Frst 98.5 5.4E-07 1.2E-11 50.5 5.5 41 102-142 1-42 (78)
37 cd05853 Ig6_Contactin-4 Sixth 98.5 1.6E-07 3.4E-12 53.5 3.0 32 1-33 51-82 (85)
38 cd05854 Ig6_Contactin-2 Sixth 98.5 2.2E-07 4.7E-12 53.0 3.6 32 1-33 51-82 (85)
39 cd04975 Ig4_SCFR_like Fourth i 98.5 4.4E-07 9.5E-12 53.5 4.9 37 108-144 10-47 (101)
40 cd05868 Ig4_NrCAM Fourth immun 98.5 2.9E-07 6.4E-12 51.3 3.9 28 116-143 1-28 (76)
41 cd05870 Ig5_NCAM-2 Fifth immun 98.4 5.6E-07 1.2E-11 52.7 5.1 38 100-138 1-38 (98)
42 cd04974 Ig3_FGFR Third immunog 98.4 2.3E-07 5E-12 53.5 3.3 31 1-32 59-89 (90)
43 cd05762 Ig8_MLCK Eighth immuno 98.4 1.1E-06 2.4E-11 51.5 6.1 71 50-127 2-77 (98)
44 cd05859 Ig4_PDGFR-alpha Fourth 98.4 5.6E-07 1.2E-11 53.0 4.7 36 110-145 12-47 (101)
45 cd05893 Ig_Palladin_C C-termin 98.4 1.6E-07 3.4E-12 52.3 2.2 30 1-31 45-74 (75)
46 cd05749 Ig2_Tyro3_like Second 98.4 5.5E-07 1.2E-11 50.9 4.4 62 58-127 6-68 (81)
47 cd05740 Ig_CEACAM_D4 Fourth im 98.4 2.4E-07 5.2E-12 53.5 3.0 32 1-32 59-90 (91)
48 cd05863 Ig2_VEGFR-3 Second imm 98.4 2.5E-07 5.3E-12 50.3 2.9 31 1-32 35-65 (67)
49 cd05857 Ig2_FGFR Second immuno 98.4 5.6E-07 1.2E-11 51.2 4.5 34 111-144 4-37 (85)
50 cd05735 Ig8_DSCAM Eight immuno 98.4 5.1E-07 1.1E-11 51.8 4.2 32 1-33 51-82 (88)
51 cd05867 Ig4_L1-CAM_like Fourth 98.4 5.1E-07 1.1E-11 50.3 4.1 29 116-144 1-29 (76)
52 cd05734 Ig7_DSCAM Seventh immu 98.4 3.7E-07 8E-12 51.3 3.4 31 1-31 48-78 (79)
53 cd04970 Ig6_Contactin_like Six 98.4 3.4E-07 7.3E-12 52.2 3.3 32 1-33 51-82 (85)
54 cd05732 Ig5_NCAM-1_like Fifth 98.4 9.3E-07 2E-11 51.4 4.9 41 101-142 2-42 (96)
55 cd05892 Ig_Myotilin_C C-termin 98.4 2.8E-07 6E-12 51.3 2.5 30 1-31 45-74 (75)
56 cd05891 Ig_M-protein_C C-termi 98.4 1.1E-06 2.4E-11 50.8 5.0 37 108-144 8-44 (92)
57 cd05852 Ig5_Contactin-1 Fifth 98.4 3.6E-07 7.8E-12 50.6 2.7 30 1-31 43-72 (73)
58 cd05876 Ig3_L1-CAM Third immun 98.4 3.7E-07 8.1E-12 50.2 2.8 31 1-32 40-70 (71)
59 cd05898 Ig5_KIRREL3 Fifth immu 98.4 1.8E-06 3.9E-11 50.5 5.7 49 101-150 2-51 (98)
60 cd05773 Ig8_hNephrin_like Eigh 98.3 1.7E-06 3.8E-11 51.7 5.4 44 100-143 3-50 (109)
61 cd05858 Ig3_FGFR-2 Third immun 98.3 5E-07 1.1E-11 52.0 2.9 31 1-32 59-89 (90)
62 PHA03376 BARF1; Provisional 98.3 1.8E-06 3.8E-11 55.6 5.5 73 1-89 91-163 (221)
63 PF07679 I-set: Immunoglobulin 98.3 5.8E-06 1.3E-10 47.3 7.4 73 49-128 1-78 (90)
64 cd05866 Ig1_NCAM-2 First immun 98.3 4.8E-07 1E-11 52.4 2.7 32 1-32 60-91 (92)
65 cd05763 Ig_1 Subgroup of the i 98.3 6.3E-07 1.4E-11 49.8 3.0 31 1-32 44-74 (75)
66 cd05848 Ig1_Contactin-5 First 98.3 1.6E-05 3.6E-10 46.1 9.1 59 64-127 18-80 (94)
67 cd05852 Ig5_Contactin-1 Fifth 98.3 1.1E-06 2.3E-11 48.7 3.8 29 116-144 1-29 (73)
68 cd05723 Ig4_Neogenin Fourth im 98.3 1.2E-06 2.5E-11 48.2 3.9 28 118-145 1-28 (71)
69 cd04978 Ig4_L1-NrCAM_like Four 98.3 1.1E-06 2.4E-11 48.8 3.9 30 116-145 1-30 (76)
70 cd05865 Ig1_NCAM-1 First immun 98.3 1.7E-06 3.7E-11 50.5 4.8 39 106-144 5-45 (96)
71 cd05724 Ig2_Robo Second immuno 98.3 2.1E-06 4.5E-11 48.8 5.1 37 108-144 3-40 (86)
72 cd05747 Ig5_Titin_like M5, fif 98.3 2.2E-06 4.7E-11 49.6 5.2 74 47-127 2-80 (92)
73 cd05738 Ig2_RPTP_IIa_LAR_like 98.3 9E-07 1.9E-11 49.1 3.4 32 1-32 42-73 (74)
74 cd04967 Ig1_Contactin First Ig 98.3 2.6E-06 5.6E-11 49.1 5.5 42 102-143 2-46 (91)
75 cd05745 Ig3_Peroxidasin Third 98.3 5.1E-07 1.1E-11 50.0 2.4 30 1-31 44-73 (74)
76 cd04977 Ig1_NCAM-1_like First 98.3 7.4E-07 1.6E-11 51.6 3.1 31 1-31 61-91 (92)
77 cd05725 Ig3_Robo Third immunog 98.3 5.7E-07 1.2E-11 49.1 2.5 30 1-31 39-68 (69)
78 cd05744 Ig_Myotilin_C_like Imm 98.3 6.5E-07 1.4E-11 49.8 2.7 30 1-31 45-74 (75)
79 cd05850 Ig1_Contactin-2 First 98.3 2.2E-05 4.9E-10 45.5 9.3 72 49-127 2-80 (94)
80 cd05726 Ig4_Robo Fhird immunog 98.3 1.2E-06 2.6E-11 50.5 3.8 32 1-33 51-82 (90)
81 cd05865 Ig1_NCAM-1 First immun 98.3 9.3E-07 2E-11 51.6 3.2 32 1-32 64-95 (96)
82 cd05723 Ig4_Neogenin Fourth im 98.3 6.8E-07 1.5E-11 49.1 2.5 30 1-31 41-70 (71)
83 cd05748 Ig_Titin_like Immunogl 98.3 8.5E-07 1.8E-11 49.1 2.9 30 1-31 44-73 (74)
84 cd04969 Ig5_Contactin_like Fif 98.3 7.6E-07 1.6E-11 49.2 2.5 30 1-31 43-72 (73)
85 cd05731 Ig3_L1-CAM_like Third 98.3 8.1E-07 1.8E-11 48.6 2.6 31 1-32 40-70 (71)
86 cd04976 Ig2_VEGFR Second immun 98.3 9.1E-07 2E-11 48.7 2.7 31 1-32 39-69 (71)
87 cd05892 Ig_Myotilin_C C-termin 98.3 1.2E-06 2.7E-11 48.7 3.3 26 119-144 1-26 (75)
88 cd05743 Ig_Perlecan_D2_like Im 98.2 2E-06 4.4E-11 48.1 4.1 28 116-143 1-28 (78)
89 cd04968 Ig3_Contactin_like Thi 98.2 9.9E-06 2.2E-10 46.3 7.0 66 58-127 9-74 (88)
90 cd05867 Ig4_L1-CAM_like Fourth 98.2 1.3E-06 2.8E-11 48.7 3.1 31 1-32 45-75 (76)
91 cd05893 Ig_Palladin_C C-termin 98.2 1.4E-06 3.1E-11 48.5 3.2 26 119-144 1-26 (75)
92 cd05863 Ig2_VEGFR-3 Second imm 98.2 1.2E-06 2.6E-11 47.6 2.8 25 119-143 1-25 (67)
93 cd05864 Ig2_VEGFR-2 Second imm 98.2 1.4E-06 3E-11 47.8 3.0 22 1-22 38-59 (70)
94 cd04971 Ig_TrKABC_d5 Fifth dom 98.2 1.5E-06 3.2E-11 49.1 3.2 29 1-30 50-78 (81)
95 cd05855 Ig_TrkB_d5 Fifth domai 98.2 1.8E-06 3.8E-11 48.5 3.4 29 1-30 48-76 (79)
96 cd05742 Ig1_VEGFR_like First i 98.2 1.3E-06 2.7E-11 49.7 2.9 31 1-32 53-83 (84)
97 cd05752 Ig1_FcgammaR_like Frst 98.2 3.1E-05 6.6E-10 43.4 8.5 60 58-128 8-68 (78)
98 cd05874 Ig6_NrCAM Sixth immuno 98.2 1.7E-06 3.7E-11 48.4 3.1 24 119-142 1-24 (77)
99 cd05733 Ig6_L1-CAM_like Sixth 98.2 1.7E-06 3.6E-11 48.4 3.0 25 119-143 1-25 (77)
100 cd05868 Ig4_NrCAM Fourth immun 98.2 1.6E-06 3.4E-11 48.3 2.9 31 1-32 45-75 (76)
101 cd04978 Ig4_L1-NrCAM_like Four 98.2 1.7E-06 3.6E-11 48.1 2.9 31 1-32 45-75 (76)
102 cd05724 Ig2_Robo Second immuno 98.2 1.5E-06 3.2E-11 49.5 2.7 31 1-31 55-85 (86)
103 cd05875 Ig6_hNeurofascin_like 98.2 2E-06 4.3E-11 48.1 3.1 24 119-142 1-24 (77)
104 cd05765 Ig_3 Subgroup of the i 98.2 1.4E-06 3E-11 49.0 2.5 30 1-31 51-80 (81)
105 cd05856 Ig2_FGFRL1-like Second 98.2 3.3E-06 7.2E-11 47.4 4.0 34 111-144 4-37 (82)
106 cd05849 Ig1_Contactin-1 First 98.2 7.5E-06 1.6E-10 47.5 5.4 71 49-127 2-79 (93)
107 cd04969 Ig5_Contactin_like Fif 98.2 3.8E-06 8.3E-11 46.3 4.0 29 116-144 1-29 (73)
108 cd05746 Ig4_Peroxidasin Fourth 98.2 1.6E-06 3.5E-11 47.3 2.4 27 1-28 40-66 (69)
109 cd05738 Ig2_RPTP_IIa_LAR_like 98.1 2.6E-06 5.7E-11 47.2 3.2 25 119-143 1-25 (74)
110 cd05730 Ig3_NCAM-1_like Third 98.1 5.9E-06 1.3E-10 48.0 4.8 65 58-127 11-79 (95)
111 cd04973 Ig1_FGFR First immunog 98.1 3.8E-06 8.3E-11 47.1 3.7 35 109-144 2-36 (79)
112 cd04975 Ig4_SCFR_like Fourth i 98.1 9.5E-06 2.1E-10 47.8 5.4 69 58-127 11-86 (101)
113 cd05866 Ig1_NCAM-2 First immun 98.1 9.4E-06 2E-10 47.0 5.3 37 104-141 3-39 (92)
114 cd05737 Ig_Myomesin_like_C C-t 98.1 7.2E-06 1.6E-10 47.4 4.9 65 58-127 9-79 (92)
115 cd05760 Ig2_PTK7 Second immuno 98.1 3.2E-06 6.8E-11 47.2 3.2 32 1-32 42-74 (77)
116 cd05744 Ig_Myotilin_C_like Imm 98.1 3.6E-06 7.9E-11 46.8 3.4 26 119-144 1-26 (75)
117 cd05753 Ig2_FcgammaR_like Seco 98.1 2.3E-06 4.9E-11 48.6 2.6 32 1-32 52-83 (83)
118 cd05735 Ig8_DSCAM Eight immuno 98.1 5.5E-06 1.2E-10 47.5 4.2 29 116-144 1-29 (88)
119 cd05722 Ig1_Neogenin First imm 98.1 9.2E-06 2E-10 47.2 5.2 35 58-93 7-41 (95)
120 cd05764 Ig_2 Subgroup of the i 98.1 2.2E-06 4.7E-11 47.4 2.3 30 1-31 44-73 (74)
121 cd05760 Ig2_PTK7 Second immuno 98.1 3.7E-06 8E-11 46.9 3.2 26 119-144 1-26 (77)
122 cd05882 Ig1_Necl-1 First (N-te 98.1 6.4E-06 1.4E-10 48.0 4.1 34 109-142 5-38 (95)
123 cd05894 Ig_C5_MyBP-C C5 immuno 98.1 9.1E-06 2E-10 46.4 4.6 66 58-127 3-73 (86)
124 KOG3515|consensus 98.1 9.6E-06 2.1E-10 62.4 5.9 125 3-140 169-340 (741)
125 cd04973 Ig1_FGFR First immunog 98.1 3.7E-06 8E-11 47.2 2.8 21 1-21 49-69 (79)
126 cd05862 Ig1_VEGFR First immuno 98.1 4.4E-06 9.6E-11 47.7 3.2 32 1-33 54-85 (86)
127 cd05864 Ig2_VEGFR-2 Second imm 98.1 4.5E-06 9.8E-11 45.8 3.0 26 119-144 1-26 (70)
128 cd05861 Ig1_PDGFR-alphabeta Fr 98.1 7E-06 1.5E-10 46.6 3.8 32 1-32 50-82 (84)
129 cd05856 Ig2_FGFRL1-like Second 98.0 3.3E-06 7.2E-11 47.4 2.4 29 1-30 52-80 (82)
130 cd05739 Ig3_RPTP_IIa_LAR_like 98.0 7.3E-06 1.6E-10 44.8 3.6 28 65-93 1-28 (69)
131 cd05736 Ig2_Follistatin_like S 98.0 8.7E-06 1.9E-10 45.2 4.0 32 1-33 43-74 (76)
132 cd04972 Ig_TrkABC_d4 Fourth do 98.0 1.3E-05 2.8E-10 46.1 4.9 67 58-127 8-77 (90)
133 cd05870 Ig5_NCAM-2 Fifth immun 98.0 0.00011 2.3E-09 42.9 8.7 69 58-127 9-85 (98)
134 cd05764 Ig_2 Subgroup of the i 98.0 1E-05 2.2E-10 44.7 4.1 29 116-144 1-29 (74)
135 cd04976 Ig2_VEGFR Second immun 98.0 5.9E-06 1.3E-10 45.4 3.0 26 119-144 1-26 (71)
136 cd05857 Ig2_FGFR Second immuno 98.0 5.2E-05 1.1E-09 42.9 7.0 66 60-127 4-72 (85)
137 cd05746 Ig4_Peroxidasin Fourth 98.0 4E-06 8.7E-11 45.7 2.2 26 119-144 1-26 (69)
138 cd05728 Ig4_Contactin-2-like F 98.0 1.1E-05 2.4E-10 45.9 4.1 65 58-127 7-72 (85)
139 cd05740 Ig_CEACAM_D4 Fourth im 98.0 1.9E-05 4.1E-10 45.6 5.1 63 58-127 11-76 (91)
140 cd05748 Ig_Titin_like Immunogl 98.0 9.7E-06 2.1E-10 44.8 3.6 26 118-143 1-26 (74)
141 cd05876 Ig3_L1-CAM Third immun 98.0 6E-06 1.3E-10 45.3 2.7 26 119-144 1-26 (71)
142 cd05895 Ig_Pro_neuregulin-1 Im 98.0 5.6E-06 1.2E-10 46.0 2.6 22 1-22 48-69 (76)
143 cd05873 Ig_Sema4D_like Immunog 98.0 2.2E-05 4.8E-10 44.9 4.9 37 108-145 3-39 (87)
144 cd07702 Ig2_VEGFR-1 Second imm 98.0 8.1E-06 1.8E-10 45.0 3.0 25 120-144 2-26 (72)
145 cd04974 Ig3_FGFR Third immunog 98.0 1.7E-05 3.7E-10 45.6 4.2 23 116-138 1-23 (90)
146 cd05736 Ig2_Follistatin_like S 98.0 9.4E-06 2E-10 45.1 3.0 27 119-145 1-27 (76)
147 cd05763 Ig_1 Subgroup of the i 97.9 1E-05 2.2E-10 44.9 3.0 24 119-142 1-24 (75)
148 cd04977 Ig1_NCAM-1_like First 97.9 4.2E-05 9E-10 44.2 5.6 39 104-143 3-42 (92)
149 cd05869 Ig5_NCAM-1 Fifth immun 97.9 3E-05 6.4E-10 45.2 5.0 75 49-127 3-84 (97)
150 cd05750 Ig_Pro_neuregulin Immu 97.9 9.7E-06 2.1E-10 44.8 2.5 22 1-22 47-68 (75)
151 cd05726 Ig4_Robo Fhird immunog 97.9 1.5E-05 3.2E-10 45.8 3.3 27 116-142 1-27 (90)
152 cd04979 Ig_Semaphorin_C Immuno 97.9 1.3E-05 2.8E-10 46.0 2.9 32 1-32 55-86 (89)
153 cd05732 Ig5_NCAM-1_like Fifth 97.9 0.0002 4.3E-09 41.5 8.0 68 58-127 9-83 (96)
154 cd05858 Ig3_FGFR-2 Third immun 97.9 2.8E-05 6.2E-10 44.7 4.3 23 116-138 1-23 (90)
155 cd05886 Ig1_Nectin-1_like Firs 97.9 2.1E-05 4.5E-10 46.1 3.7 32 1-32 67-98 (99)
156 cd05882 Ig1_Necl-1 First (N-te 97.9 9.5E-05 2.1E-09 43.0 6.4 73 58-130 5-86 (95)
157 cd05855 Ig_TrkB_d5 Fifth domai 97.9 1.7E-05 3.8E-10 44.5 3.0 26 120-145 2-27 (79)
158 cd05874 Ig6_NrCAM Sixth immuno 97.9 9.1E-05 2E-09 41.3 6.0 25 68-93 1-25 (77)
159 cd05757 Ig2_IL1R_like Second i 97.9 2.4E-05 5.2E-10 45.3 3.6 28 1-29 56-83 (92)
160 cd04979 Ig_Semaphorin_C Immuno 97.9 3.3E-05 7.1E-10 44.3 4.2 35 108-143 3-37 (89)
161 PF13895 Ig_2: Immunoglobulin 97.8 6.3E-05 1.4E-09 41.7 5.1 40 102-143 2-41 (80)
162 cd04971 Ig_TrKABC_d5 Fifth dom 97.8 2.1E-05 4.5E-10 44.4 3.1 27 120-146 2-28 (81)
163 cd04967 Ig1_Contactin First Ig 97.8 0.00045 9.8E-09 39.7 8.8 58 65-127 19-80 (91)
164 cd05859 Ig4_PDGFR-alpha Fourth 97.8 3.7E-05 7.9E-10 45.3 4.1 68 59-127 12-86 (101)
165 cd05729 Ig2_FGFR_like Second i 97.8 5.1E-05 1.1E-09 42.7 4.6 33 111-143 4-36 (85)
166 cd05875 Ig6_hNeurofascin_like 97.8 0.00012 2.7E-09 40.8 6.0 24 68-92 1-24 (77)
167 cd07702 Ig2_VEGFR-1 Second imm 97.8 2.1E-05 4.5E-10 43.3 2.7 21 1-21 40-60 (72)
168 cd07701 Ig1_Necl-3 First (N-te 97.8 5.5E-05 1.2E-09 44.0 4.5 32 108-139 4-35 (95)
169 cd05733 Ig6_L1-CAM_like Sixth 97.8 0.00012 2.6E-09 40.8 5.8 25 68-93 1-25 (77)
170 cd05765 Ig_3 Subgroup of the i 97.8 2.6E-05 5.7E-10 43.7 3.0 24 116-139 1-24 (81)
171 cd05731 Ig3_L1-CAM_like Third 97.8 2.7E-05 5.9E-10 42.4 3.0 25 119-143 1-25 (71)
172 cd05758 Ig5_KIRREL3-like Fifth 97.8 0.00011 2.4E-09 42.8 5.8 35 58-93 9-44 (98)
173 cd05725 Ig3_Robo Third immunog 97.8 2.7E-05 5.8E-10 42.4 2.8 24 119-142 1-24 (69)
174 cd05750 Ig_Pro_neuregulin Immu 97.8 3.2E-05 7E-10 42.6 3.2 26 119-144 1-27 (75)
175 cd05754 Ig3_Perlecan_like Thir 97.8 8.1E-05 1.8E-09 42.2 4.8 36 107-142 7-43 (85)
176 cd05891 Ig_M-protein_C C-termi 97.8 7.8E-05 1.7E-09 43.1 4.8 65 58-127 9-79 (92)
177 cd05845 Ig2_L1-CAM_like Second 97.7 5.9E-05 1.3E-09 43.8 4.1 38 108-145 10-48 (95)
178 cd05885 Ig2_Necl-4 Second immu 97.7 5.4E-05 1.2E-09 42.5 3.3 27 118-144 1-28 (80)
179 cd05756 Ig1_IL1R_like First im 97.7 5.3E-05 1.1E-09 44.0 3.4 33 110-142 8-45 (94)
180 cd05887 Ig1_Nectin-3_like Firs 97.7 6.2E-05 1.3E-09 43.9 3.5 32 1-32 64-95 (96)
181 cd05754 Ig3_Perlecan_like Thir 97.7 3.4E-05 7.3E-10 43.8 2.2 22 1-22 56-77 (85)
182 cd05773 Ig8_hNephrin_like Eigh 97.7 0.00013 2.8E-09 43.5 4.8 29 64-93 22-50 (109)
183 cd05854 Ig6_Contactin-2 Sixth 97.7 7.6E-05 1.7E-09 42.5 3.6 27 117-143 1-29 (85)
184 cd05873 Ig_Sema4D_like Immunog 97.6 0.00091 2E-08 38.2 7.9 72 58-136 4-79 (87)
185 cd05755 Ig2_ICAM-1_like Second 97.6 0.00015 3.2E-09 42.5 4.7 41 103-143 3-46 (100)
186 cd05729 Ig2_FGFR_like Second i 97.6 4.3E-05 9.3E-10 43.1 2.3 29 1-30 55-83 (85)
187 cd05743 Ig_Perlecan_D2_like Im 97.6 0.0001 2.2E-09 41.1 3.7 58 65-127 1-63 (78)
188 cd05897 Ig2_IL1R2_like Second 97.6 5.1E-05 1.1E-09 44.1 2.4 21 1-21 59-79 (95)
189 cd05741 Ig_CEACAM_D1_like Firs 97.6 5.4E-05 1.2E-09 43.5 2.6 30 1-30 61-90 (92)
190 cd05871 Ig_Semaphorin_classIII 97.6 6.6E-05 1.4E-09 43.3 2.7 31 1-32 57-88 (91)
191 cd05753 Ig2_FcgammaR_like Seco 97.6 0.00017 3.6E-09 40.9 4.2 35 109-143 7-42 (83)
192 cd05775 Ig_SLAM-CD84_like_N N- 97.6 7.8E-05 1.7E-09 43.5 2.9 32 1-32 65-96 (97)
193 cd04970 Ig6_Contactin_like Six 97.6 0.00016 3.4E-09 41.0 4.1 27 117-143 1-29 (85)
194 smart00408 IGc2 Immunoglobulin 97.6 0.00013 2.8E-09 38.1 3.5 29 115-143 1-29 (63)
195 cd05718 Ig1_PVR_like First imm 97.5 0.00013 2.8E-09 42.5 3.5 32 1-32 66-97 (98)
196 cd07690 Ig1_CD4 First immunogl 97.5 0.00027 5.8E-09 41.0 4.7 31 111-141 2-32 (94)
197 cd05734 Ig7_DSCAM Seventh immu 97.5 7.6E-05 1.7E-09 41.7 2.3 22 119-140 1-22 (79)
198 KOG3515|consensus 97.5 0.00028 6E-09 54.7 5.9 121 9-144 71-250 (741)
199 cd05885 Ig2_Necl-4 Second immu 97.5 0.00073 1.6E-08 38.0 6.1 59 68-127 2-64 (80)
200 cd07701 Ig1_Necl-3 First (N-te 97.5 0.00032 6.9E-09 40.8 4.6 73 58-130 5-86 (95)
201 cd05742 Ig1_VEGFR_like First i 97.5 0.00015 3.2E-09 41.0 3.0 27 116-142 1-29 (84)
202 PF08205 C2-set_2: CD80-like C 97.5 0.00025 5.4E-09 40.5 4.0 27 116-142 14-41 (89)
203 PHA02633 hypothetical protein; 97.5 0.00016 3.5E-09 38.0 2.8 32 1-33 22-53 (63)
204 cd05759 Ig2_KIRREL3-like Secon 97.5 0.00019 4.1E-09 40.4 3.4 25 118-142 1-26 (82)
205 cd05846 Ig1_MRC-OX-2_like Firs 97.4 0.00016 3.5E-09 42.1 3.2 32 1-32 65-96 (97)
206 cd05883 Ig2_Necl-2 Second immu 97.4 0.00025 5.3E-09 40.0 3.6 27 118-144 1-28 (82)
207 PF13895 Ig_2: Immunoglobulin 97.4 0.00099 2.1E-08 36.8 5.6 58 60-127 9-66 (80)
208 cd05755 Ig2_ICAM-1_like Second 97.3 0.0028 6.1E-08 37.2 7.1 66 61-127 12-83 (100)
209 cd05845 Ig2_L1-CAM_like Second 97.3 0.00064 1.4E-08 39.5 4.3 31 58-88 11-42 (95)
210 cd05853 Ig6_Contactin-4 Sixth 97.3 0.00046 9.9E-09 39.3 3.7 27 117-143 1-29 (85)
211 cd05717 Ig1_Necl-1-3_like Firs 97.3 0.00068 1.5E-08 39.2 4.5 31 109-139 5-35 (95)
212 cd05889 Ig1_DNAM-1_like First 97.3 0.00039 8.5E-09 40.5 3.4 25 1-25 64-88 (96)
213 cd05895 Ig_Pro_neuregulin-1 Im 97.3 0.00034 7.3E-09 38.7 3.0 26 119-144 1-27 (76)
214 smart00408 IGc2 Immunoglobulin 97.3 0.00023 5E-09 37.1 2.2 21 1-21 43-63 (63)
215 cd05884 Ig2_Necl-3 Second immu 97.2 0.00051 1.1E-08 38.9 3.6 25 119-143 2-27 (83)
216 cd05771 IgC_Tapasin_R Tapasin- 97.2 0.001 2.2E-08 41.4 5.1 68 65-141 11-80 (139)
217 PF00047 ig: Immunoglobulin do 97.2 0.00043 9.3E-09 36.8 3.0 27 116-142 1-28 (64)
218 cd05751 Ig1_LILRB1_like First 97.2 0.00065 1.4E-08 39.1 3.7 19 1-19 57-75 (91)
219 cd00098 IgC Immunoglobulin Con 97.1 0.00077 1.7E-08 38.8 3.8 31 114-144 11-43 (95)
220 cd05861 Ig1_PDGFR-alphabeta Fr 97.1 0.00068 1.5E-08 38.4 3.4 25 116-140 1-25 (84)
221 cd05768 IgC_CH4 CH4 domain (fo 97.1 0.00079 1.7E-08 39.7 3.7 33 111-143 11-45 (102)
222 cd05761 Ig2_Necl-1-4_like Seco 97.1 0.00078 1.7E-08 38.0 3.4 25 119-143 2-27 (82)
223 cd07705 Ig2_Necl-1 Second immu 97.1 0.00085 1.8E-08 38.0 3.6 25 119-143 2-27 (83)
224 cd05756 Ig1_IL1R_like First im 97.1 0.00069 1.5E-08 39.3 3.2 66 59-127 8-81 (94)
225 cd05772 IgC_SIRP Signal-regula 97.1 0.0013 2.8E-08 39.4 4.4 34 110-143 15-50 (111)
226 cd05717 Ig1_Necl-1-3_like Firs 97.1 0.0022 4.8E-08 37.1 5.2 71 58-128 5-84 (95)
227 smart00409 IG Immunoglobulin. 97.0 0.00071 1.5E-08 37.4 2.9 22 1-22 55-76 (86)
228 smart00410 IG_like Immunoglobu 97.0 0.00071 1.5E-08 37.4 2.9 22 1-22 55-76 (86)
229 cd07698 IgC_MHC_I_alpha3 Class 97.0 0.0015 3.3E-08 37.7 4.3 37 101-140 2-40 (93)
230 cd05860 Ig4_SCFR Fourth immuno 97.0 0.0022 4.8E-08 37.6 4.9 34 108-141 10-44 (101)
231 cd05767 IgC_MHC_II_alpha Class 97.0 0.0018 3.8E-08 37.6 4.5 29 115-143 14-44 (94)
232 cd05727 Ig2_Contactin-2-like S 97.0 0.0018 3.8E-08 37.7 4.4 34 109-142 11-45 (96)
233 cd07699 IgC_L Immunoglobulin C 97.0 0.001 2.2E-08 39.1 3.4 36 108-143 9-46 (100)
234 cd07696 IgC_CH3 CH3 domain (th 97.0 0.00097 2.1E-08 38.8 3.0 36 107-142 5-43 (96)
235 cd05883 Ig2_Necl-2 Second immu 96.9 0.0044 9.6E-08 34.9 5.3 59 68-127 2-65 (82)
236 cd05757 Ig2_IL1R_like Second i 96.9 0.0012 2.5E-08 38.2 2.9 34 111-144 5-43 (92)
237 cd04985 IgC_CH1 CH1 domain (fi 96.9 0.0029 6.3E-08 36.8 4.6 28 114-141 14-43 (95)
238 PHA03273 envelope glycoprotein 96.9 0.024 5.1E-07 41.8 9.9 76 1-93 202-280 (486)
239 cd07698 IgC_MHC_I_alpha3 Class 96.9 0.0095 2.1E-07 34.3 6.7 69 65-135 14-92 (93)
240 smart00409 IG Immunoglobulin. 96.9 0.0044 9.5E-08 34.1 5.2 34 110-143 3-37 (86)
241 smart00410 IG_like Immunoglobu 96.9 0.0044 9.5E-08 34.1 5.2 34 110-143 3-37 (86)
242 cd05899 IgV_TCR_beta Immunoglo 96.9 0.0028 6.1E-08 37.7 4.5 32 106-138 3-34 (110)
243 cd05847 IgC_CH2_IgE CH2 domain 96.8 0.0021 4.6E-08 37.3 3.7 30 113-142 11-42 (94)
244 cd07697 IgC_TCR_gamma T cell r 96.8 0.0022 4.8E-08 37.3 3.7 36 108-143 8-45 (96)
245 cd05766 IgC_MHC_II_beta Class 96.8 0.0023 4.9E-08 37.1 3.7 31 114-144 12-44 (94)
246 cd05872 Ig_Sema4B_like Immunog 96.8 0.0026 5.6E-08 36.2 3.8 35 109-144 4-38 (85)
247 cd04983 IgV_TCR_alpha_like Imm 96.8 0.0033 7.1E-08 37.2 4.3 33 106-138 3-35 (109)
248 cd05770 IgC_beta2m Class I maj 96.7 0.0035 7.5E-08 36.3 4.1 30 114-143 13-44 (93)
249 cd05769 IgC_TCR_beta T cell re 96.7 0.0023 4.9E-08 38.6 3.4 36 108-143 10-47 (115)
250 cd05881 Ig1_Necl-2 First (N-te 96.7 0.029 6.3E-07 32.6 7.8 75 58-132 5-88 (95)
251 cd05727 Ig2_Contactin-2-like S 96.7 0.0034 7.5E-08 36.5 3.9 66 58-127 11-81 (96)
252 cd04980 IgV_L_kappa Immunoglob 96.6 0.0058 1.3E-07 36.1 4.7 35 104-138 3-38 (106)
253 PF07654 C1-set: Immunoglobuli 96.6 0.0053 1.2E-07 34.6 4.3 29 115-143 7-37 (83)
254 cd07690 Ig1_CD4 First immunogl 96.6 0.0069 1.5E-07 35.1 4.7 28 61-88 3-30 (94)
255 cd04982 IgV_TCR_gamma Immunogl 96.5 0.0048 1E-07 37.0 4.0 32 107-138 4-37 (116)
256 cd05871 Ig_Semaphorin_classIII 96.5 0.0048 1E-07 35.5 3.7 28 110-138 5-32 (91)
257 smart00407 IGc1 Immunoglobulin 96.5 0.0051 1.1E-07 34.0 3.7 24 119-142 2-27 (75)
258 cd00099 IgV Immunoglobulin var 96.5 0.0016 3.4E-08 38.2 1.7 21 1-21 71-91 (105)
259 cd05751 Ig1_LILRB1_like First 96.5 0.008 1.7E-07 34.5 4.5 38 102-141 3-40 (91)
260 PHA03270 envelope glycoprotein 96.4 0.062 1.3E-06 39.4 9.5 76 1-93 186-264 (466)
261 PHA03271 envelope glycoprotein 96.4 0.07 1.5E-06 39.0 9.5 75 1-92 211-289 (490)
262 cd05884 Ig2_Necl-3 Second immu 96.4 0.029 6.2E-07 31.7 6.4 59 68-128 2-68 (83)
263 PF13927 Ig_3: Immunoglobulin 96.4 0.0043 9.2E-08 33.6 2.9 35 101-136 1-36 (75)
264 cd05767 IgC_MHC_II_alpha Class 96.4 0.037 8E-07 32.1 6.8 69 65-135 15-93 (94)
265 PF08205 C2-set_2: CD80-like C 96.3 0.014 3.1E-07 33.1 5.0 26 65-90 14-40 (89)
266 cd05759 Ig2_KIRREL3-like Secon 96.2 0.0088 1.9E-07 33.5 3.6 25 68-93 2-27 (82)
267 PHA03269 envelope glycoprotein 96.2 0.16 3.5E-06 37.9 10.6 77 1-93 293-372 (566)
268 PF00047 ig: Immunoglobulin do 96.2 0.011 2.3E-07 31.2 3.7 25 65-89 1-26 (64)
269 cd07705 Ig2_Necl-1 Second immu 96.2 0.032 6.9E-07 31.5 5.8 59 68-127 2-67 (83)
270 cd05766 IgC_MHC_II_beta Class 96.2 0.057 1.2E-06 31.3 6.9 69 64-135 13-92 (94)
271 cd05881 Ig1_Necl-2 First (N-te 96.1 0.015 3.3E-07 33.7 4.4 34 109-142 5-38 (95)
272 cd05711 Ig_FcalphaRI Immunoglo 96.0 0.021 4.6E-07 33.0 4.5 38 102-141 2-39 (94)
273 PHA02987 Ig domain OX-2-like p 96.0 0.0099 2.1E-07 38.6 3.3 33 1-33 89-122 (189)
274 cd04986 IgC_CH2 CH2 domain (se 95.8 0.013 2.8E-07 34.3 3.1 35 107-141 10-47 (99)
275 cd05898 Ig5_KIRREL3 Fifth immu 95.8 0.04 8.6E-07 32.2 5.0 42 48-93 2-44 (98)
276 PHA03376 BARF1; Provisional 95.6 0.091 2E-06 34.4 6.5 25 116-140 139-163 (221)
277 cd00099 IgV Immunoglobulin var 95.6 0.02 4.4E-07 33.4 3.4 27 112-138 2-29 (105)
278 cd05711 Ig_FcalphaRI Immunoglo 95.5 0.19 4.1E-06 29.0 7.3 67 59-127 9-76 (94)
279 cd05772 IgC_SIRP Signal-regula 95.5 0.032 6.9E-07 33.4 4.1 31 62-93 18-50 (111)
280 cd05899 IgV_TCR_beta Immunoglo 95.5 0.045 9.8E-07 32.4 4.8 29 58-87 6-34 (110)
281 cd05761 Ig2_Necl-1-4_like Seco 95.5 0.031 6.6E-07 31.4 3.8 25 68-93 2-27 (82)
282 cd05897 Ig2_IL1R2_like Second 95.5 0.018 4E-07 33.4 2.8 32 112-143 6-42 (95)
283 cd05770 IgC_beta2m Class I maj 95.4 0.14 3E-06 29.6 6.4 70 64-135 14-92 (93)
284 cd04980 IgV_L_kappa Immunoglob 95.3 0.067 1.4E-06 31.5 5.0 30 58-87 8-38 (106)
285 cd04983 IgV_TCR_alpha_like Imm 95.3 0.055 1.2E-06 31.9 4.7 30 58-87 6-35 (109)
286 cd07706 IgV_TCR_delta Immunogl 95.2 0.049 1.1E-06 32.6 4.3 33 105-137 3-36 (116)
287 cd05872 Ig_Sema4B_like Immunog 95.2 0.094 2E-06 29.8 5.1 61 58-126 4-67 (85)
288 cd04984 IgV_L_lambda Immunoglo 94.9 0.035 7.6E-07 32.2 3.0 27 112-138 2-30 (98)
289 cd00098 IgC Immunoglobulin Con 94.9 0.044 9.5E-07 31.4 3.3 65 63-129 11-85 (95)
290 PF07686 V-set: Immunoglobulin 94.8 0.079 1.7E-06 31.0 4.5 34 105-138 5-39 (114)
291 cd05862 Ig1_VEGFR First immuno 94.8 0.05 1.1E-06 30.8 3.4 26 116-141 1-28 (86)
292 cd05769 IgC_TCR_beta T cell re 94.7 0.3 6.6E-06 29.4 6.6 72 64-137 17-101 (115)
293 cd04982 IgV_TCR_gamma Immunogl 94.6 0.085 1.8E-06 31.5 4.2 30 58-87 6-37 (116)
294 cd07704 Ig2_Nectin-3-4_like Se 94.5 0.11 2.4E-06 30.3 4.4 32 108-139 8-41 (97)
295 cd07704 Ig2_Nectin-3-4_like Se 94.5 0.22 4.8E-06 29.0 5.6 70 59-128 10-83 (97)
296 cd07700 IgV_CD8_beta Immunoglo 94.5 0.064 1.4E-06 31.7 3.5 27 112-138 2-29 (107)
297 cd07692 Ig_CD3_epsilon Immunog 94.4 0.035 7.6E-07 29.7 1.9 29 113-144 4-32 (65)
298 smart00407 IGc1 Immunoglobulin 94.3 0.2 4.4E-06 27.4 5.1 58 68-128 2-70 (75)
299 cd05860 Ig4_SCFR Fourth immuno 94.2 0.11 2.4E-06 30.5 3.8 34 58-92 11-45 (101)
300 cd07689 Ig2_VCAM-1 Second immu 94.0 0.63 1.4E-05 27.2 6.7 60 62-126 12-83 (99)
301 cd07699 IgC_L Immunoglobulin C 94.0 0.086 1.9E-06 30.8 3.2 29 64-93 16-46 (100)
302 cd00096 Ig Immunoglobulin doma 93.9 0.048 1E-06 28.2 1.9 20 1-20 47-66 (74)
303 PF13927 Ig_3: Immunoglobulin 93.8 0.061 1.3E-06 28.8 2.2 20 66-85 16-36 (75)
304 cd04984 IgV_L_lambda Immunoglo 93.7 0.12 2.5E-06 29.9 3.4 28 61-88 2-31 (98)
305 cd04981 IgV_H Immunoglobulin ( 93.6 0.17 3.6E-06 30.5 4.0 30 108-137 4-35 (117)
306 cd07694 Ig2_CD4 Second immunog 93.5 0.18 3.9E-06 28.8 3.7 32 110-141 8-41 (88)
307 cd05896 Ig1_IL1RAPL-1_like Fir 93.4 0.18 3.9E-06 29.8 3.8 34 110-143 9-53 (104)
308 cd05720 Ig_CD8_alpha Immunoglo 93.3 0.12 2.7E-06 30.3 3.1 26 113-138 3-28 (104)
309 cd05741 Ig_CEACAM_D1_like Firs 93.3 0.097 2.1E-06 29.7 2.6 25 116-140 1-25 (92)
310 cd05774 Ig_CEACAM_D1 First imm 93.2 0.13 2.9E-06 30.4 3.1 28 111-138 8-35 (105)
311 cd05880 Ig_EVA1 Immunoglobulin 93.0 0.24 5.2E-06 29.7 4.1 30 108-137 5-38 (115)
312 cd05715 Ig_P0-like Immunoglobu 92.8 0.26 5.6E-06 29.5 4.0 30 108-137 5-38 (116)
313 cd00096 Ig Immunoglobulin doma 92.7 0.18 3.8E-06 25.9 3.0 24 119-142 1-24 (74)
314 PHA02987 Ig domain OX-2-like p 92.4 0.29 6.2E-06 32.0 4.0 31 109-139 23-54 (189)
315 cd05716 Ig_pIgR Immunoglobulin 92.3 0.25 5.4E-06 28.5 3.5 29 111-139 2-31 (98)
316 cd07700 IgV_CD8_beta Immunoglo 92.1 0.34 7.5E-06 28.5 3.9 28 61-88 2-30 (107)
317 cd05719 Ig2_PVR_like Second im 91.7 0.3 6.6E-06 28.3 3.2 24 115-138 14-38 (95)
318 cd07703 Ig2_Nectin-2_like Seco 91.6 0.26 5.7E-06 28.6 2.9 24 115-138 14-38 (95)
319 cd07706 IgV_TCR_delta Immunogl 91.5 0.6 1.3E-05 27.8 4.6 30 58-87 7-37 (116)
320 cd07696 IgC_CH3 CH3 domain (th 91.4 0.57 1.2E-05 27.2 4.2 30 62-91 11-43 (96)
321 cd05720 Ig_CD8_alpha Immunoglo 91.3 0.39 8.4E-06 28.2 3.5 27 62-88 3-29 (104)
322 cd05714 Ig_CSPGs_LP Immunoglob 91.3 0.32 7E-06 28.5 3.2 24 115-138 1-30 (106)
323 cd07689 Ig2_VCAM-1 Second immu 91.1 0.45 9.8E-06 27.8 3.5 27 113-139 12-41 (99)
324 cd04981 IgV_H Immunoglobulin ( 91.0 0.65 1.4E-05 27.9 4.4 30 58-87 5-36 (117)
325 PHA03052 Hypothetical protein; 91.0 1 2.2E-05 24.2 4.5 34 109-142 5-41 (69)
326 cd05768 IgC_CH4 CH4 domain (fo 91.0 0.31 6.6E-06 28.7 2.8 29 64-93 15-45 (102)
327 cd04985 IgC_CH1 CH1 domain (fi 90.6 0.95 2.1E-05 26.2 4.6 62 65-129 16-87 (95)
328 cd05877 Ig_LP_like Immunoglobu 90.5 0.4 8.8E-06 28.0 3.1 24 115-138 1-30 (106)
329 cd05847 IgC_CH2_IgE CH2 domain 89.8 0.71 1.5E-05 26.7 3.6 27 65-92 14-42 (94)
330 cd05775 Ig_SLAM-CD84_like_N N- 89.2 0.37 8E-06 27.9 2.2 27 114-140 2-29 (97)
331 PF07686 V-set: Immunoglobulin 89.0 0.84 1.8E-05 26.5 3.7 29 58-86 9-38 (114)
332 cd05712 Ig_Siglec_N Immunoglob 88.9 1 2.2E-05 27.1 4.0 31 108-138 6-42 (119)
333 PHA02865 MHC-like TNF binding 88.9 0.9 1.9E-05 32.7 4.2 21 118-138 216-238 (338)
334 cd05721 IgV_CTLA-4 Immunoglobu 88.9 1 2.3E-05 27.1 3.9 31 108-138 5-38 (115)
335 cd05879 Ig_P0 Immunoglobulin ( 88.8 2.4 5.3E-05 25.5 5.6 30 108-137 5-38 (116)
336 cd05716 Ig_pIgR Immunoglobulin 88.6 0.96 2.1E-05 26.0 3.7 28 60-87 2-30 (98)
337 PF07654 C1-set: Immunoglobuli 88.5 0.79 1.7E-05 25.5 3.2 62 65-128 8-76 (83)
338 cd05715 Ig_P0-like Immunoglobu 88.2 1.2 2.6E-05 26.6 4.0 29 58-86 6-38 (116)
339 cd05880 Ig_EVA1 Immunoglobulin 88.2 1.2 2.5E-05 26.7 3.9 29 58-86 6-38 (115)
340 cd07697 IgC_TCR_gamma T cell r 87.1 1.2 2.5E-05 25.9 3.4 28 65-93 16-45 (96)
341 cd05846 Ig1_MRC-OX-2_like Firs 86.2 1.1 2.3E-05 25.9 2.9 23 116-138 1-24 (97)
342 cd05878 Ig_Aggrecan_like Immun 86.0 1.3 2.7E-05 26.4 3.2 24 115-138 1-34 (110)
343 PHA02914 Immunoglobulin-like d 85.8 1 2.2E-05 33.1 3.1 33 1-33 85-117 (500)
344 cd07694 Ig2_CD4 Second immunog 85.6 1.8 3.9E-05 24.8 3.5 61 61-127 10-72 (88)
345 cd05896 Ig1_IL1RAPL-1_like Fir 84.7 6.2 0.00013 23.4 7.0 69 59-128 9-92 (104)
346 cd05718 Ig1_PVR_like First imm 84.6 1.1 2.3E-05 25.7 2.4 23 117-139 1-26 (98)
347 cd05712 Ig_Siglec_N Immunoglob 84.4 2.3 5.1E-05 25.5 3.9 31 58-88 7-43 (119)
348 cd07691 Ig_CD3_gamma_delta Imm 84.4 1.5 3.2E-05 23.8 2.6 15 4-18 40-54 (69)
349 cd05900 Ig_Aggrecan Immunoglob 84.4 1.8 3.9E-05 25.9 3.3 23 65-87 2-36 (112)
350 cd05714 Ig_CSPGs_LP Immunoglob 84.1 1.8 3.9E-05 25.2 3.3 23 65-87 2-30 (106)
351 KOG1480|consensus 83.6 0.98 2.1E-05 35.9 2.4 33 1-33 187-219 (909)
352 cd05713 Ig_MOG_like Immunoglob 83.0 1.9 4.1E-05 24.8 3.0 24 116-139 1-27 (100)
353 cd05774 Ig_CEACAM_D1 First imm 82.9 2.2 4.7E-05 25.2 3.2 27 60-86 8-34 (105)
354 PHA03271 envelope glycoprotein 82.1 7.7 0.00017 28.9 6.2 32 113-144 257-291 (490)
355 cd05879 Ig_P0 Immunoglobulin ( 81.7 9 0.0002 23.0 6.7 29 58-86 6-38 (116)
356 smart00406 IGv Immunoglobulin 81.7 2.2 4.7E-05 23.0 2.9 22 118-139 1-24 (81)
357 cd05877 Ig_LP_like Immunoglobu 81.7 2.5 5.5E-05 24.6 3.3 24 64-87 1-30 (106)
358 cd07703 Ig2_Nectin-2_like Seco 81.0 2.6 5.7E-05 24.4 3.0 22 66-87 16-38 (95)
359 cd05719 Ig2_PVR_like Second im 80.1 4 8.7E-05 23.6 3.6 22 66-87 16-38 (95)
360 cd05878 Ig_Aggrecan_like Immun 79.7 3.5 7.5E-05 24.5 3.4 23 65-87 2-34 (110)
361 PHA03273 envelope glycoprotein 79.4 3.2 6.9E-05 31.2 3.6 43 99-143 235-280 (486)
362 PF06832 BiPBP_C: Penicillin-B 78.9 9.5 0.00021 21.5 5.4 42 100-142 9-54 (89)
363 PHA03269 envelope glycoprotein 78.8 3.1 6.8E-05 31.5 3.4 44 99-144 327-373 (566)
364 PHA03270 envelope glycoprotein 78.6 3.2 7E-05 30.9 3.4 43 99-143 219-264 (466)
365 PF07354 Sp38: Zona-pellucida- 77.7 1.5 3.3E-05 30.3 1.5 20 1-20 41-60 (271)
366 PHA03052 Hypothetical protein; 77.5 9.2 0.0002 20.7 4.8 36 58-94 5-43 (69)
367 PHA03112 IL-18 binding protein 76.3 4.5 9.8E-05 25.3 3.2 26 114-139 36-63 (141)
368 PF05790 C2-set: Immunoglobuli 74.6 6 0.00013 22.2 3.2 14 4-17 50-63 (80)
369 cd05902 Ig_Neurocan Immunoglob 74.6 4.7 0.0001 24.1 2.9 23 116-138 2-31 (110)
370 PHA03042 CD47-like protein; Pr 69.1 8 0.00017 27.1 3.3 27 6-33 79-105 (286)
371 KOG1480|consensus 65.8 2.2 4.7E-05 34.2 0.2 41 104-144 132-173 (909)
372 cd05888 Ig1_Nectin-4_like Frst 64.3 8.7 0.00019 22.2 2.5 21 118-138 2-25 (100)
373 PHA03189 UL14 tegument protein 63.8 8 0.00017 27.6 2.6 29 3-31 139-167 (348)
374 COG5475 Uncharacterized small 63.5 8.1 0.00018 19.9 1.9 13 10-22 29-41 (60)
375 PHA03286 envelope glycoprotein 62.8 67 0.0014 24.5 7.4 86 1-87 131-226 (492)
376 cd05890 Ig2_Nectin-1_like Seco 60.9 13 0.00027 21.8 2.6 21 117-137 21-42 (98)
377 PHA03283 envelope glycoprotein 58.3 82 0.0018 24.5 7.0 84 1-86 138-233 (542)
378 KOG4597|consensus 56.7 7.2 0.00016 29.6 1.5 31 1-32 261-291 (560)
379 TIGR00864 PCC polycystin catio 54.4 2.1E+02 0.0045 27.6 12.5 118 4-137 1834-1989(2740)
380 KOG0613|consensus 51.1 1.3E+02 0.0028 26.3 7.6 27 60-86 344-371 (1205)
381 PF06328 Lep_receptor_Ig: Ig-l 49.8 48 0.001 18.9 4.6 31 110-140 12-47 (89)
382 KOG0613|consensus 48.9 33 0.00071 29.5 4.1 33 108-140 341-374 (1205)
383 cd05901 Ig_Versican Immunoglob 48.7 33 0.00073 20.8 3.3 23 65-87 2-35 (117)
384 PF02480 Herpes_gE: Alphaherpe 42.4 8.3 0.00018 29.1 0.0 34 1-34 93-126 (439)
385 PF08204 V-set_CD47: CD47 immu 39.6 37 0.00079 21.1 2.5 33 112-144 23-60 (130)
386 TIGR00864 PCC polycystin catio 38.7 3.8E+02 0.0083 26.1 12.1 29 110-138 1876-1904(2740)
387 PF13220 DUF4028: Protein of u 38.5 27 0.00059 17.8 1.5 17 6-22 7-23 (65)
388 PHA03292 envelope glycoprotein 37.4 68 0.0015 23.8 3.8 31 1-32 132-162 (413)
389 PHA03289 envelope glycoprotein 36.8 76 0.0017 23.0 3.9 31 1-32 126-156 (352)
390 PHA03290 envelope glycoprotein 36.3 77 0.0017 23.1 3.9 31 1-32 133-163 (357)
391 PF15096 G6B: G6B family 36.1 27 0.00058 23.1 1.5 15 4-18 81-95 (224)
392 PF03921 ICAM_N: Intercellular 30.7 1.1E+02 0.0025 17.6 4.2 33 104-136 6-38 (91)
393 PF11781 RRN7: RNA polymerase 30.2 27 0.00058 16.2 0.7 11 5-15 19-29 (36)
394 PHA02982 hypothetical protein; 26.7 61 0.0013 22.1 2.1 21 1-21 104-124 (251)
395 PF11049 KSHV_K1: Glycoprotein 25.5 55 0.0012 17.7 1.4 23 120-144 2-24 (71)
396 KOG4597|consensus 24.8 41 0.00088 25.8 1.1 29 109-137 204-232 (560)
397 KOG1026|consensus 23.8 81 0.0018 25.9 2.6 32 110-141 201-232 (774)
398 PHA03291 envelope glycoprotein 22.3 1.8E+02 0.0039 21.6 3.8 30 1-31 133-162 (401)
399 PF01333 Apocytochr_F_C: Apocy 22.2 70 0.0015 19.4 1.6 21 1-21 13-33 (118)
400 PF09085 Adhes-Ig_like: Adhesi 21.8 1.9E+02 0.004 17.1 3.7 38 103-142 5-47 (110)
401 PHA03281 envelope glycoprotein 21.4 4.3E+02 0.0093 21.1 7.4 85 1-86 302-394 (642)
402 PHA03282 envelope glycoprotein 21.1 1.1E+02 0.0025 23.5 2.7 21 1-21 337-357 (540)
403 PRK01242 rpl39e 50S ribosomal 20.3 1.4E+02 0.0031 15.1 2.4 23 126-148 18-40 (50)
No 1
>KOG3513|consensus
Probab=99.80 E-value=5.5e-19 Score=135.67 Aligned_cols=123 Identities=29% Similarity=0.515 Sum_probs=102.5
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP 80 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~ 80 (151)
|.+++.+|+|.|.|.|.|..| ...+.+.|+|. .+|.++..+ ++..+..|+.+.+.|.+.|.|.|
T Consensus 298 I~nv~~~D~G~Y~C~AeN~~G-~~~~~~~v~v~-------------a~P~w~~~~--~d~~~~~gs~v~~eC~a~g~P~p 361 (1051)
T KOG3513|consen 298 IPNVQYEDAGEYECIAENSRG-SATHSGHVTVY-------------APPYWLQKP--QDTEADTGSNVTLECKASGKPNP 361 (1051)
T ss_pred ecccCcCCCeEEEEEEecccc-cceeeEEEEEe-------------cCchhhccc--ceeEecCCCCeEEEEEecCCCCC
Confidence 678999999999999999999 77777887775 789988877 67888899999999999999999
Q ss_pred eEEEEeCCeeeEecccC-------------------------------------------CCCCCeeeeCC--ceeEeec
Q psy16421 81 SIMWRREGGEMITNSFN-------------------------------------------NTVPPIVKIPS--QLIGAHE 115 (151)
Q Consensus 81 ~~~W~~~~~~~~~~~~~-------------------------------------------~~~~p~~~~~~--~~~~~~~ 115 (151)
.+.|++ ++.++....+ ...+|.|...+ ....+..
T Consensus 362 ~v~Wlk-Ng~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~ 440 (1051)
T KOG3513|consen 362 TVKWLK-NGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVV 440 (1051)
T ss_pred ceEEee-CCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEe
Confidence 999999 6777663332 12346666554 3346788
Q ss_pred CCcEEEEeeecccCCCeeEEEcCCc
Q psy16421 116 GQQLVLECISEAYPKSVNYWTREKG 140 (151)
Q Consensus 116 g~~~~l~C~~~g~p~~~~~W~k~~~ 140 (151)
|.++.+.|...+.|.|.+.|.|+++
T Consensus 441 g~~v~i~C~~~asP~p~~~W~k~~~ 465 (1051)
T KOG3513|consen 441 GGTVTIDCKPFASPKPKVSWLKGGE 465 (1051)
T ss_pred CCeEEEeeccCCCCcceEEEEcCCc
Confidence 9999999999999999999999877
No 2
>KOG4221|consensus
Probab=99.80 E-value=7.7e-19 Score=135.32 Aligned_cols=138 Identities=26% Similarity=0.451 Sum_probs=112.2
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP 80 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~ 80 (151)
|.++++.|.|.|+|.+.++.....+..+.|+|... ..+...-.|...+ ....+.+|+.+.|.|.+.|.|.|
T Consensus 197 I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~-------~~~~~~~~fl~~p--~~~~v~~g~~v~leCvvs~~p~p 267 (1381)
T KOG4221|consen 197 ISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSD-------PGALNKLVFLDEP--SNAVVVEGDDVVLECVVSGVPKP 267 (1381)
T ss_pred ecccccCCCceEEEEEecCCcCCccceeEEEecCC-------cccccceeeecCC--CccccccCCcEEEEEEecCCCCC
Confidence 67899999999999999987767788888887521 1122333455555 56788899999999999999999
Q ss_pred eEEEEeCCeeeEecccC-----------------------------------------CCCCCeeeeCCceeEeecCCcE
Q psy16421 81 SIMWRREGGEMITNSFN-----------------------------------------NTVPPIVKIPSQLIGAHEGQQL 119 (151)
Q Consensus 81 ~~~W~~~~~~~~~~~~~-----------------------------------------~~~~p~~~~~~~~~~~~~g~~~ 119 (151)
.+.|++ |+..+..... +..+|.|...+....+.++.++
T Consensus 268 ~v~Wlr-ng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~di 346 (1381)
T KOG4221|consen 268 SVKWLR-NGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDI 346 (1381)
T ss_pred ceEEee-CCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccce
Confidence 999999 6766654422 4678899999999999999999
Q ss_pred EEEeeecccCCCeeEEEcCCceeccCCCC
Q psy16421 120 VLECISEAYPKSVNYWTREKGDMIANGKT 148 (151)
Q Consensus 120 ~l~C~~~g~p~~~~~W~k~~~~~~~~~~~ 148 (151)
+|.|.+.|+|.|.+.|+|||..+.+++.+
T Consensus 347 e~ec~~~g~p~p~v~w~kNgd~~ipsdy~ 375 (1381)
T KOG4221|consen 347 EFECPVSGKPIPTVRWYKNGDRIIPSDYF 375 (1381)
T ss_pred eEeCCCCCCCcceEEEEecCcccCcccce
Confidence 99999999999999999999888876544
No 3
>KOG4194|consensus
Probab=99.79 E-value=5.2e-19 Score=128.88 Aligned_cols=131 Identities=27% Similarity=0.536 Sum_probs=108.4
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP 80 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~ 80 (151)
+.+|+-.|+|.|+|+++|-+|..-++.++|+|. .-|.|+..| .++++..|+.+.|.|.+.|.|.|
T Consensus 578 L~nVt~td~grYQCVvtN~FGStysqk~KltV~-------------~~PsFtktP--~dltl~tg~mArl~CaAtG~P~P 642 (873)
T KOG4194|consen 578 LDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVN-------------QAPSFTKTP--EDLTLRTGQMARLECAATGHPRP 642 (873)
T ss_pred eeeeecccCceEEEEEecccCcchhheeEEEee-------------ccCccccCc--ccceeecccceeeeeeccCCCCc
Confidence 368899999999999999999877888887764 789999988 68999999999999999999999
Q ss_pred eEEEEeCCeeeEecccC-------------------------------------------CCCCCeeeeCCceeEeecCC
Q psy16421 81 SIMWRREGGEMITNSFN-------------------------------------------NTVPPIVKIPSQLIGAHEGQ 117 (151)
Q Consensus 81 ~~~W~~~~~~~~~~~~~-------------------------------------------~~~~p~~~~~~~~~~~~~g~ 117 (151)
++.|.|.+|.-...... +...|.+.++.....+..|+
T Consensus 643 eIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~ge 722 (873)
T KOG4194|consen 643 EIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGE 722 (873)
T ss_pred ceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecc
Confidence 99999966553332221 23456677777788899999
Q ss_pred cEEEEeeecccCC-CeeEEEcCCceeccCC
Q psy16421 118 QLVLECISEAYPK-SVNYWTREKGDMIANG 146 (151)
Q Consensus 118 ~~~l~C~~~g~p~-~~~~W~k~~~~~~~~~ 146 (151)
++.|.|.+.|.|. |.+.|+|+++++.-..
T Consensus 723 t~vlqC~a~~~~a~pr~~W~k~d~pil~t~ 752 (873)
T KOG4194|consen 723 TLVLQCLAEGAPADPRLEWFKEDKPILITE 752 (873)
T ss_pred eEEEEEecCCCCCCccccccCCCCceEEee
Confidence 9999999999888 9999999888775433
No 4
>KOG3513|consensus
Probab=99.73 E-value=3.6e-17 Score=125.89 Aligned_cols=130 Identities=22% Similarity=0.391 Sum_probs=105.3
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP 80 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~ 80 (151)
|++++.+|+|+|.|.|.|..| .....+.|.|. ...|.|...+..+...+..|..+.+.|...+.|.|
T Consensus 390 is~v~~~dsg~YQC~A~Nk~G-~i~anA~L~V~------------a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p 456 (1051)
T KOG3513|consen 390 ISNVQESDSGVYQCIAENKYG-TIYANAELKVL------------ASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKP 456 (1051)
T ss_pred EEecccccCeEEEeeeecccc-eEeeeeEEEEE------------ccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcc
Confidence 578999999999999999999 67788888875 25688877775455677789999999999999999
Q ss_pred eEEEEeCCeeeEecccC----------------------------------------CCCCCeeeeCCceeEeecCCcEE
Q psy16421 81 SIMWRREGGEMITNSFN----------------------------------------NTVPPIVKIPSQLIGAHEGQQLV 120 (151)
Q Consensus 81 ~~~W~~~~~~~~~~~~~----------------------------------------~~~~p~~~~~~~~~~~~~g~~~~ 120 (151)
.+.|.+ +++.+....+ +.-++.|...++...+..|+.+.
T Consensus 457 ~~~W~k-~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~ 535 (1051)
T KOG3513|consen 457 KVSWLK-GGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVT 535 (1051)
T ss_pred eEEEEc-CCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEE
Confidence 999999 5554443332 23467788888999999999999
Q ss_pred EEeeecccCCC--eeEEEcCCceecc
Q psy16421 121 LECISEAYPKS--VNYWTREKGDMIA 144 (151)
Q Consensus 121 l~C~~~g~p~~--~~~W~k~~~~~~~ 144 (151)
|+|++...|.. .|.|.+||..+..
T Consensus 536 l~Ce~shD~~ld~~f~W~~nG~~id~ 561 (1051)
T KOG3513|consen 536 LTCEASHDPSLDITFTWKKNGRPIDF 561 (1051)
T ss_pred EEeecccCCCcceEEEEEECCEEhhc
Confidence 99999977765 4999999876543
No 5
>KOG4222|consensus
Probab=99.69 E-value=6.4e-17 Score=124.33 Aligned_cols=128 Identities=22% Similarity=0.433 Sum_probs=107.1
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP 80 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~ 80 (151)
|.++...|+|.|.|++.|..|...+...+|.| .++|.|...+ ..+.+..|..+.|.|.+.|.|.|
T Consensus 191 IsnvrksD~GtY~CVatNmvG~ReS~~A~lsv-------------~e~P~f~~rp--~~~~v~~g~~~~f~c~v~GdP~P 255 (1281)
T KOG4222|consen 191 ISNVRKSDEGTYACVATNMVGERESIPARLSV-------------QEKPWFWKRP--KDLAVLVGAAAEFDCRVGGDPQP 255 (1281)
T ss_pred EeccccCCCceeeeeecccccccccccceeee-------------ccCCcccccc--ccceeecccccccccccCCCCCC
Confidence 67899999999999999999988888888666 4889998877 67889999999999999999999
Q ss_pred eEEEEeCCeeeEecccC----------------------------------------CCCCCeeeeCCceeEeecCCcEE
Q psy16421 81 SIMWRREGGEMITNSFN----------------------------------------NTVPPIVKIPSQLIGAHEGQQLV 120 (151)
Q Consensus 81 ~~~W~~~~~~~~~~~~~----------------------------------------~~~~p~~~~~~~~~~~~~g~~~~ 120 (151)
.+.|.+. +..+..... +..+|.|...+....+..|..+.
T Consensus 256 ~Vrwkk~-~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt 334 (1281)
T KOG4222|consen 256 TVRWKKD-DPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVT 334 (1281)
T ss_pred ceeeecc-CCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEE
Confidence 9999883 333221110 46788888888888899999999
Q ss_pred EEeeecccCCCeeEEEcCCceecc
Q psy16421 121 LECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 121 l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
|.|.+.|.|+|.+.|.|.|...+.
T Consensus 335 ~pc~~~gnP~PavfW~keg~q~ll 358 (1281)
T KOG4222|consen 335 FPCETLGNPPPAVFWLKEGSQDLL 358 (1281)
T ss_pred eeeecCCCCCcceEEeccCcceec
Confidence 999999999999999998765443
No 6
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.63 E-value=1e-14 Score=102.90 Aligned_cols=127 Identities=17% Similarity=0.283 Sum_probs=83.1
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEee-----ec
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCA-----AS 75 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~-----~~ 75 (151)
|.++..+|+|.|+|.+.|..+ .....+.|+|... .++.+...+ ....+.+|..+.|.|. ..
T Consensus 86 i~~~~~~DsG~Y~C~a~N~~g-~~~~s~~L~V~~~-----------~~~~~~~~~--~~~~~~~g~~~~i~C~~~~~~~~ 151 (326)
T PHA02785 86 ILNPTQSDSGIYICITKNETY-CDMMSLNLTIVSV-----------SESNIDLIS--YPQIVNERSTGEMVCPNINAFIA 151 (326)
T ss_pred EcccCcccCeEEEEEEECCCc-ceEEEEEEEEEec-----------CCCccceee--ccceecccCcEEEECCChhhccc
Confidence 356788999999999999987 4556667766421 222222222 3345668999999997 24
Q ss_pred CCCCCeEEEEeCCeeeEe-----cccC-------------------------------------C---CCCCeeeeCCce
Q psy16421 76 GSPPPSIMWRREGGEMIT-----NSFN-------------------------------------N---TVPPIVKIPSQL 110 (151)
Q Consensus 76 g~~~~~~~W~~~~~~~~~-----~~~~-------------------------------------~---~~~p~~~~~~~~ 110 (151)
+.+.+.+.|++ +..... .... + ..||.+. .+..
T Consensus 152 ~~~~~~i~W~k-~~~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~-~p~~ 229 (326)
T PHA02785 152 SNVNADIIWSG-HRRLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQ-LPEG 229 (326)
T ss_pred CCCCceEEEcc-CCccCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceec-CCCc
Confidence 57889999987 331100 0000 0 1233332 2355
Q ss_pred eEeecCCcEEEEeeecccCCC---eeEEEcCCceec
Q psy16421 111 IGAHEGQQLVLECISEAYPKS---VNYWTREKGDMI 143 (151)
Q Consensus 111 ~~~~~g~~~~l~C~~~g~p~~---~~~W~k~~~~~~ 143 (151)
..+..|+++.|.|.+.|.|.+ .++|+|||..+.
T Consensus 230 ~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~ 265 (326)
T PHA02785 230 VVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYE 265 (326)
T ss_pred EEecCCCcEEEEEEEECCCCCCCceEEEEECCEECC
Confidence 667789999999999998864 799999977653
No 7
>KOG4221|consensus
Probab=99.58 E-value=3.3e-14 Score=110.40 Aligned_cols=125 Identities=20% Similarity=0.357 Sum_probs=94.8
Q ss_pred ccCCeEEEEEEEcC-CCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEE
Q psy16421 6 REHMGAYLCIASNG-VPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMW 84 (151)
Q Consensus 6 ~~d~G~Y~C~~~~~-~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W 84 (151)
.-|+|.|+|.|.-. .|.-.+..+.|.+. ..+.|..++ ...++..|+++.|.|.+.+.+.|.++|
T Consensus 110 ~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a-------------~~~~f~~~~--~~~t~~~g~ta~f~c~vn~e~~p~i~w 174 (1381)
T KOG4221|consen 110 KVDEGVYQCLATVEDVGSILSRTAKVALA-------------GLADFALQP--ESTTLLYGQTALFSCEVNAEPVPTIMW 174 (1381)
T ss_pred cccCceEEEEEEccccceeecceEEEEec-------------ccCccccCc--cceeEecCCcEEEEEEEcCccCceeEE
Confidence 36899999999876 55455666666654 566676666 467888999999999999999999999
Q ss_pred EeCCeeeEecccC-----------------------------------------------CCCCCeeeeCCceeEeecCC
Q psy16421 85 RREGGEMITNSFN-----------------------------------------------NTVPPIVKIPSQLIGAHEGQ 117 (151)
Q Consensus 85 ~~~~~~~~~~~~~-----------------------------------------------~~~~p~~~~~~~~~~~~~g~ 117 (151)
.+ +.+++....+ ......|...+....+.+|+
T Consensus 175 ~k-n~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~ 253 (1381)
T KOG4221|consen 175 LK-NDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGD 253 (1381)
T ss_pred ec-ccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCC
Confidence 99 5565543333 01112245556777889999
Q ss_pred cEEEEeeecccCCCeeEEEcCCceeccCC
Q psy16421 118 QLVLECISEAYPKSVNYWTREKGDMIANG 146 (151)
Q Consensus 118 ~~~l~C~~~g~p~~~~~W~k~~~~~~~~~ 146 (151)
++.|.|.+.|.|+|.|.|+|||..+.-++
T Consensus 254 ~v~leCvvs~~p~p~v~Wlrng~~i~~ds 282 (1381)
T KOG4221|consen 254 DVVLECVVSGVPKPSVKWLRNGEKISVDS 282 (1381)
T ss_pred cEEEEEEecCCCCCceEEeeCCeeeeecc
Confidence 99999999999999999999987776543
No 8
>KOG4222|consensus
Probab=99.44 E-value=4e-13 Score=103.97 Aligned_cols=126 Identities=26% Similarity=0.506 Sum_probs=101.4
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP 80 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~ 80 (151)
|.++++.|+|.|.|.+.|..| .......++| ..+|.|...+ .+..+.-|..++|.|.+.|+|.|
T Consensus 282 i~r~tp~deg~y~C~a~n~vG-~l~asa~ltV-------------~apP~f~kkp--~dq~v~lg~~vt~pc~~~gnP~P 345 (1281)
T KOG4222|consen 282 IDRVTPTDEGTYVCPAENLVG-GLEASATLTV-------------QAPPSFGKKP--RDQKVALGGTVTFPCETLGNPPP 345 (1281)
T ss_pred ccccCCCcccceeeecccccc-ccccccceEE-------------ecCccccccc--CccccccCceEEeeeecCCCCCc
Confidence 567889999999999999998 5555556555 4899998887 56677789999999999999999
Q ss_pred eEEEEeCCeeeEecccC-----------------------------------------------------C-CCCCeeee
Q psy16421 81 SIMWRREGGEMITNSFN-----------------------------------------------------N-TVPPIVKI 106 (151)
Q Consensus 81 ~~~W~~~~~~~~~~~~~-----------------------------------------------------~-~~~p~~~~ 106 (151)
.+.|.+++.+-+..... . .-+|.|..
T Consensus 346 avfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~ 425 (1281)
T KOG4222|consen 346 AVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQ 425 (1281)
T ss_pred ceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeee
Confidence 99999977666554310 1 23455666
Q ss_pred CCceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421 107 PSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM 142 (151)
Q Consensus 107 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~ 142 (151)
.+...+..++....|.|.+.|.|.|.+.|+++|-.+
T Consensus 426 g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v 461 (1281)
T KOG4222|consen 426 GPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNV 461 (1281)
T ss_pred cccccccccCcccccChhhhCCCCCCchhhhccccc
Confidence 677777888999999999999999999999987544
No 9
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.30 E-value=2.9e-11 Score=75.46 Aligned_cols=72 Identities=21% Similarity=0.380 Sum_probs=54.3
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCC-CC
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGS-PP 79 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-~~ 79 (151)
|.+++.+|+|.|.|.+.+..+ .....+.|+|. .+|.+...+ ......+|+.+.|.|.+.|. |.
T Consensus 5 i~~v~~~D~G~Y~C~~~~~~~-~~~~~~~l~v~-------------~~P~v~~~~--~~~~~~~~~~~~L~C~a~g~~P~ 68 (139)
T cd05771 5 LPGLTVHDEGTYICSVSTPPH-QAQQIIQLSVS-------------EPPRVRLSL--EKLVSMIEEPQTLICHIAGYYPL 68 (139)
T ss_pred ECCCCHHHCEEEEEEEEccCc-ceeeEEEEEEe-------------cCCceEEeC--CCceeecCCcEEEEEEECCCCCC
Confidence 578999999999999998766 45566666653 677776655 34444578899999999885 54
Q ss_pred -CeEEEEeCC
Q psy16421 80 -PSIMWRREG 88 (151)
Q Consensus 80 -~~~~W~~~~ 88 (151)
+.+.|++++
T Consensus 69 ~~~i~W~~~g 78 (139)
T cd05771 69 DVQVEWTREP 78 (139)
T ss_pred CeEEEEEECC
Confidence 489999954
No 10
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.28 E-value=6.6e-11 Score=79.40 Aligned_cols=100 Identities=15% Similarity=0.259 Sum_probs=66.0
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeec-----
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAAS----- 75 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~----- 75 (151)
|.+++++|+|.|.|+|.|..+ .....+.|.|. .++ ....+.+|+.+.|.|.+.
T Consensus 102 I~~v~~~DsG~Y~C~a~N~~~-~~~~~i~L~V~-------------~~~--------~~~~~~~G~~v~L~C~~~~~~~~ 159 (227)
T PHA02826 102 IGNVINIDEGIYICTISSGNI-CEESTIRLTFD-------------SGT--------INYQFNSGKDSKLHCYGTDGISS 159 (227)
T ss_pred ECCCChHHCEEEEEEEEECCc-ceEEEEEEEEe-------------cCC--------ccceEecCCCEEEEeeCCCCccc
Confidence 578999999999999999776 44445555442 111 234567899999999975
Q ss_pred CCCCCeEEEEeCCeeeEecccCCC---CCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421 76 GSPPPSIMWRREGGEMITNSFNNT---VPPIVKIPSQLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 76 g~~~~~~~W~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~~~g~~~~l~C~~~g 127 (151)
+.|.|.+.|+| +++++....+.. ....+.+ ..+...+....+|.+.-
T Consensus 160 ~~p~p~I~WyK-ng~~l~~~~r~~~~~~~~~L~I----~~V~~~DsG~YtC~a~~ 209 (227)
T PHA02826 160 TFKDYTLTWYK-NGNIVLYTDRIQLRNNNSTLVI----KSATHDDSGIYTCNLRF 209 (227)
T ss_pred cCCCceEEEEE-CCEECCCCCCEEEeCCCCEEEE----CcCCHHhCEEEEEEEEE
Confidence 34578999999 677664322110 0011222 13567888899998754
No 11
>KOG4194|consensus
Probab=99.25 E-value=1.7e-11 Score=90.36 Aligned_cols=79 Identities=28% Similarity=0.436 Sum_probs=65.5
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCC-
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP- 79 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~- 79 (151)
|.||+.+|.|.|+|.|+|..| ..+..++|+| ...|.+..+. .+..+..|+++.+.|.+.+.|.
T Consensus 673 Itnvk~eD~GiYtC~A~n~AG-~isanAtL~V-------------~e~p~f~~PL--~~~~V~~get~vlqC~a~~~~a~ 736 (873)
T KOG4194|consen 673 ITNVKIEDQGIYTCTAQNVAG-QISANATLTV-------------LETPSFSIPL--EDQLVVVGETLVLQCLAEGAPAD 736 (873)
T ss_pred EecccccccceeEEeeecccc-ceeeceEEEE-------------ecCCcccccc--cceEEEecceEEEEEecCCCCCC
Confidence 678999999999999999999 6777778766 4677777776 5678888999999999999886
Q ss_pred CeEEEEeCCeeeEeccc
Q psy16421 80 PSIMWRREGGEMITNSF 96 (151)
Q Consensus 80 ~~~~W~~~~~~~~~~~~ 96 (151)
|.+.|+| +.+++....
T Consensus 737 pr~~W~k-~d~pil~t~ 752 (873)
T KOG4194|consen 737 PRLEWFK-EDKPILITE 752 (873)
T ss_pred ccccccC-CCCceEEee
Confidence 9999999 556665433
No 12
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.14 E-value=2.8e-10 Score=80.50 Aligned_cols=78 Identities=23% Similarity=0.503 Sum_probs=54.2
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccc----eEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKR----IMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG 76 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~----~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g 76 (151)
|.+++.+|+|.|+|.+.|..+. .... +.|.|. ....+|.+.. + ....+..|+.+.|.|.+.|
T Consensus 181 i~~v~~~d~G~Y~C~~~n~~g~-~~~~~t~~v~l~V~----------~~~~pp~~~~-p--~~~~~~~G~~v~L~C~a~g 246 (326)
T PHA02785 181 IEDVRKNDAGYYTCVLKYIYGD-KTYNVTRIVKLEVR----------DRIIPPTMQL-P--EGVVTSIGSNLTIACRVSL 246 (326)
T ss_pred EeecChhhCeEEEEEEEeccCC-EEEeEEEEEEEEEe----------ccCCCceecC-C--CcEEecCCCcEEEEEEEEC
Confidence 5789999999999999998773 2222 223331 0123444432 3 4567778999999999998
Q ss_pred CCC---CeEEEEeCCeeeEe
Q psy16421 77 SPP---PSIMWRREGGEMIT 93 (151)
Q Consensus 77 ~~~---~~~~W~~~~~~~~~ 93 (151)
.|. +.+.|++ |++.+.
T Consensus 247 ~P~~~~~~v~W~k-ng~~i~ 265 (326)
T PHA02785 247 RPPTTDADVFWIS-NGMYYE 265 (326)
T ss_pred CCCCCCceEEEEE-CCEECC
Confidence 775 4899999 666654
No 13
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.91 E-value=4.1e-09 Score=60.61 Aligned_cols=42 Identities=26% Similarity=0.409 Sum_probs=38.2
Q ss_pred CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421 101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM 142 (151)
Q Consensus 101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~ 142 (151)
||.|...+....+.+|+++.|.|.+.|.|.|.++|+|++..+
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~ 42 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPM 42 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCC
Confidence 578888888899999999999999999999999999987654
No 14
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.83 E-value=1e-08 Score=60.02 Aligned_cols=44 Identities=18% Similarity=0.366 Sum_probs=39.5
Q ss_pred CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
||.|...+....+.+|+++.|.|.+.|.|.|.+.|+|+|..+..
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~ 44 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLET 44 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECcc
Confidence 57888888889999999999999999999999999999876654
No 15
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.81 E-value=1.6e-08 Score=58.55 Aligned_cols=45 Identities=18% Similarity=0.407 Sum_probs=39.8
Q ss_pred CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
.||.|...+....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~ 46 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVS 46 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCC
Confidence 478888888889999999999999999999999999999766543
No 16
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.80 E-value=1e-08 Score=57.96 Aligned_cols=39 Identities=10% Similarity=0.230 Sum_probs=33.8
Q ss_pred eeCCceeEeecCCcEEEEeeecccCCC-eeEEEcCCceec
Q psy16421 105 KIPSQLIGAHEGQQLVLECISEAYPKS-VNYWTREKGDMI 143 (151)
Q Consensus 105 ~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~k~~~~~~ 143 (151)
...+..+.+.+|+++.|.|.+.|.|.| .|.|+|||..+.
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~ 41 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLG 41 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECC
Confidence 345677889999999999999999999 699999987664
No 17
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.79 E-value=2e-08 Score=58.87 Aligned_cols=43 Identities=12% Similarity=0.202 Sum_probs=38.0
Q ss_pred CeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 102 PIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
|.|...+....+..|+.+.|.|.+.|.|+|.+.|+|+|..+..
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~ 43 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQE 43 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecC
Confidence 5677778888999999999999999999999999999877653
No 18
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.79 E-value=5.7e-08 Score=65.33 Aligned_cols=36 Identities=11% Similarity=0.261 Sum_probs=28.4
Q ss_pred eeEeecCCcEEEEeeec-----ccCCCeeEEEcCCceeccC
Q psy16421 110 LIGAHEGQQLVLECISE-----AYPKSVNYWTREKGDMIAN 145 (151)
Q Consensus 110 ~~~~~~g~~~~l~C~~~-----g~p~~~~~W~k~~~~~~~~ 145 (151)
...+.+|+++.|.|.+. +.|.|.++|+|||..+..+
T Consensus 138 ~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~ 178 (227)
T PHA02826 138 NYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYT 178 (227)
T ss_pred cceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCC
Confidence 34567899999999986 3467899999998876543
No 19
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.72 E-value=3.7e-08 Score=57.32 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=33.8
Q ss_pred CeeeeCCceeEee---cCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 102 PIVKIPSQLIGAH---EGQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 102 p~~~~~~~~~~~~---~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
|.|...+..+.+. +|+.+.|.|.+.|.|.|.++|+|||..+..
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~ 47 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDT 47 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECcc
Confidence 5566666555443 478999999999999999999999876643
No 20
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.68 E-value=4.4e-08 Score=57.05 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=35.0
Q ss_pred eeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421 104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN 145 (151)
Q Consensus 104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~ 145 (151)
|...+....+.+|+++.|.|.+.|.|.|.+.|+|+|..+...
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~ 43 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLV 43 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccc
Confidence 345566777889999999999999999999999997766543
No 21
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.67 E-value=7.7e-08 Score=55.19 Aligned_cols=44 Identities=27% Similarity=0.471 Sum_probs=37.1
Q ss_pred CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
|+.+...+....+.+|+++.|.|.+.|.|.|.++|+|++..+..
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~ 44 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPS 44 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCC
Confidence 45566677788899999999999999999999999998765543
No 22
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.65 E-value=8.6e-08 Score=55.76 Aligned_cols=42 Identities=19% Similarity=0.409 Sum_probs=33.6
Q ss_pred CeeeeCCceeEeecC---CcEEEEeeecccCCCeeEEEcCCceec
Q psy16421 102 PIVKIPSQLIGAHEG---QQLVLECISEAYPKSVNYWTREKGDMI 143 (151)
Q Consensus 102 p~~~~~~~~~~~~~g---~~~~l~C~~~g~p~~~~~W~k~~~~~~ 143 (151)
|.|...+....+.+| +++.|.|.+.|.|.|.++|++||..+.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~ 46 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIK 46 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECc
Confidence 556666666665555 689999999999999999999987664
No 23
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.64 E-value=1.3e-07 Score=54.29 Aligned_cols=43 Identities=19% Similarity=0.444 Sum_probs=38.4
Q ss_pred CeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 102 PIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
|.|...+....+.+|+++.|.|.+.|.|.|.+.|+++|..+..
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~ 43 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS 43 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceee
Confidence 5677778889999999999999999999999999999777665
No 24
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.64 E-value=1.4e-07 Score=55.30 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=35.7
Q ss_pred CCeeeeCCceeEeecCCcEEEEeeecccCCC-eeEEEcCCceeccC
Q psy16421 101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKS-VNYWTREKGDMIAN 145 (151)
Q Consensus 101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~k~~~~~~~~ 145 (151)
||.+.. +....+.+|+++.|.|.+.|.|.| .+.|++++..+...
T Consensus 2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~ 46 (98)
T cd05758 2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESG 46 (98)
T ss_pred CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCC
Confidence 566654 456678999999999999999999 59999997766543
No 25
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.62 E-value=1.1e-06 Score=51.24 Aligned_cols=77 Identities=26% Similarity=0.625 Sum_probs=49.3
Q ss_pred CCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCce---eE-----eecCCcE
Q psy16421 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQL---IG-----AHEGQQL 119 (151)
Q Consensus 48 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~---~~-----~~~g~~~ 119 (151)
+|.+...+ ....+.+|+.+.|.|.+.|.|.|.+.|++ +++.+...........+...... .. +...+..
T Consensus 1 ~P~i~~~p--~~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G 77 (100)
T cd07693 1 PPRIVEHP--SDLIVSKGDPATLNCKAEGRPTPTIQWLK-NGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEG 77 (100)
T ss_pred CCeEEecC--ceeEEcCCCeEEEEeeCCcCCCCEEEEEE-CCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCE
Confidence 35666665 56788899999999999999999999999 56665431100111111111110 01 1367888
Q ss_pred EEEeeecc
Q psy16421 120 VLECISEA 127 (151)
Q Consensus 120 ~l~C~~~g 127 (151)
...|.+..
T Consensus 78 ~Y~C~a~N 85 (100)
T cd07693 78 VYVCVAHN 85 (100)
T ss_pred EEEEEEEc
Confidence 99999864
No 26
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.61 E-value=8.4e-08 Score=54.72 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=34.7
Q ss_pred eeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
|...+....+..|+++.|.|.+.|.|.|.+.|+|+|..+..
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~ 42 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLAS 42 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCC
Confidence 34456677899999999999999999999999999876543
No 27
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.60 E-value=1.4e-07 Score=54.68 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=32.5
Q ss_pred CceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 108 SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 108 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
+..+.+.+|+++.|.|.+.|.|.|.+.|+|+|..+..
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~ 44 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALAL 44 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECcc
Confidence 5567889999999999999999999999999876643
No 28
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.59 E-value=1.4e-07 Score=54.35 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=32.4
Q ss_pred CCceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 107 PSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 107 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
++....+.+|+.+.|.|.+.|.|.|.++|+++|..+..
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~ 43 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQ 43 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccC
Confidence 34556689999999999999999999999999876543
No 29
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.57 E-value=2.2e-07 Score=54.31 Aligned_cols=42 Identities=14% Similarity=0.302 Sum_probs=34.6
Q ss_pred CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421 101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM 142 (151)
Q Consensus 101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~ 142 (151)
.|.|...+....+..|+.+.|.|.+.|.|.|.++|++++..+
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~ 43 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNI 43 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccc
Confidence 567776666655666899999999999999999999986554
No 30
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.57 E-value=7.2e-07 Score=51.22 Aligned_cols=73 Identities=29% Similarity=0.429 Sum_probs=47.6
Q ss_pred CCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC-CCCeeeeCCceeEeecCCcEEEEeeec
Q psy16421 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT-VPPIVKIPSQLIGAHEGQQLVLECISE 126 (151)
Q Consensus 48 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~g~~~~l~C~~~ 126 (151)
+|.+...+ .+..+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....... ..-.+.+. .+...+.....|.+.
T Consensus 1 ~p~i~~~~--~~~~~~~G~~v~l~C~~~G~P~P~v~W~k-~~~~~~~~~~~~~~~~~L~I~----~v~~~D~G~Y~C~A~ 73 (88)
T cd05851 1 PADINVKF--KDTYALKGQNVTLECFALGNPVPVIRWRK-ILEPMPATAEISMSGAVLKIF----NIQPEDEGTYECEAE 73 (88)
T ss_pred CCceEEcc--ccEEEeCCCcEEEEEEecccCCCEEEEEE-CCcCCCCCCEEecCCCEEEEC----cCChhhCEEEEEEEE
Confidence 45666666 57788899999999999999999999999 444433211000 00112211 234577788999976
Q ss_pred c
Q psy16421 127 A 127 (151)
Q Consensus 127 g 127 (151)
.
T Consensus 74 N 74 (88)
T cd05851 74 N 74 (88)
T ss_pred c
Confidence 4
No 31
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.55 E-value=2.1e-07 Score=53.20 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=31.8
Q ss_pred ceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 109 QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 109 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
..+.+..|+.+.|.|.+.|.|+|.++|+|++..+..
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~ 38 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTE 38 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECcc
Confidence 456789999999999999999999999999876654
No 32
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.55 E-value=1.8e-07 Score=54.42 Aligned_cols=44 Identities=23% Similarity=0.540 Sum_probs=34.9
Q ss_pred CCeeeeCC--ceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 101 PPIVKIPS--QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 101 ~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
||.|.... ....+..|+++.|.|.+.|.|.|.+.|+|+|..+..
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~ 46 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIES 46 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcC
Confidence 45555543 344788999999999999999999999999766543
No 33
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.53 E-value=2.8e-07 Score=53.49 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=32.3
Q ss_pred CeeeeCCceeEeec---CCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421 102 PIVKIPSQLIGAHE---GQQLVLECISEAYPKSVNYWTREKGDMI 143 (151)
Q Consensus 102 p~~~~~~~~~~~~~---g~~~~l~C~~~g~p~~~~~W~k~~~~~~ 143 (151)
|.|...+..+.+.+ |..+.|.|.+.|.|.|.++|+|++..+.
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~ 46 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDID 46 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEcc
Confidence 55666665554444 3479999999999999999999977653
No 34
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.52 E-value=1.6e-07 Score=51.42 Aligned_cols=28 Identities=18% Similarity=0.490 Sum_probs=25.3
Q ss_pred CCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421 116 GQQLVLECISEAYPKSVNYWTREKGDMI 143 (151)
Q Consensus 116 g~~~~l~C~~~g~p~~~~~W~k~~~~~~ 143 (151)
|+++.|.|.+.|.|.|.+.|+|+|..+.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~ 28 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELT 28 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECC
Confidence 6789999999999999999999987654
No 35
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.52 E-value=1.7e-07 Score=52.01 Aligned_cols=29 Identities=31% Similarity=0.674 Sum_probs=26.2
Q ss_pred cCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421 115 EGQQLVLECISEAYPKSVNYWTREKGDMI 143 (151)
Q Consensus 115 ~g~~~~l~C~~~g~p~~~~~W~k~~~~~~ 143 (151)
+|+++.|.|.+.|.|.|.++|+|+|..+.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~ 29 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLS 29 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECC
Confidence 68999999999999999999999977654
No 36
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.49 E-value=5.4e-07 Score=50.52 Aligned_cols=41 Identities=15% Similarity=0.353 Sum_probs=34.7
Q ss_pred CeeeeCCceeEeecCCcEEEEeeecccCCC-eeEEEcCCcee
Q psy16421 102 PIVKIPSQLIGAHEGQQLVLECISEAYPKS-VNYWTREKGDM 142 (151)
Q Consensus 102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~k~~~~~ 142 (151)
|.+...+....+.+|+++.|.|.+.+.|.+ .+.|+|||..+
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l 42 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLL 42 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEe
Confidence 346667788889999999999999998864 59999998766
No 37
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.47 E-value=1.6e-07 Score=53.50 Aligned_cols=32 Identities=28% Similarity=0.584 Sum_probs=27.4
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 33 (151)
|.+++..|+|.|+|.|.|..+ ..+..+.|.|.
T Consensus 51 I~nv~~~dsG~YtC~a~n~~~-~~~a~a~L~V~ 82 (85)
T cd05853 51 IRSIQLKHAGKYVCMVQTSVD-KLSAAADLIVR 82 (85)
T ss_pred EecCCHHHCEEEEEEEEcccC-ceEEEEEEEEe
Confidence 678999999999999999998 66777777764
No 38
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.47 E-value=2.2e-07 Score=53.04 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=27.3
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 33 (151)
|.+++..|+|.|+|.|.|..| ..+..+.|.|.
T Consensus 51 I~~v~~~D~G~YtC~A~n~~g-~~~~~~~L~V~ 82 (85)
T cd05854 51 IVNAQLSHAGTYTCTAQTVVD-SASASATLVVR 82 (85)
T ss_pred EccCChhhCeEEEEEEecCCC-CEEEEEEEEEE
Confidence 578999999999999999998 66677777764
No 39
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.46 E-value=4.4e-07 Score=53.46 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=31.9
Q ss_pred CceeEeecCCcEEEEeeecc-cCCCeeEEEcCCceecc
Q psy16421 108 SQLIGAHEGQQLVLECISEA-YPKSVNYWTREKGDMIA 144 (151)
Q Consensus 108 ~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~k~~~~~~~ 144 (151)
...+.+.+|+++.|.|.+.| .|+|.+.|+|||..+..
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~ 47 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTN 47 (101)
T ss_pred CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCC
Confidence 35677899999999999999 89999999999776653
No 40
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.46 E-value=2.9e-07 Score=51.33 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=25.4
Q ss_pred CCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421 116 GQQLVLECISEAYPKSVNYWTREKGDMI 143 (151)
Q Consensus 116 g~~~~l~C~~~g~p~~~~~W~k~~~~~~ 143 (151)
|+++.|.|.+.|.|.|.++|+|+|..+.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~ 28 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIE 28 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEcc
Confidence 6889999999999999999999987664
No 41
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.44 E-value=5.6e-07 Score=52.69 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=32.5
Q ss_pred CCCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcC
Q psy16421 100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTRE 138 (151)
Q Consensus 100 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~ 138 (151)
++|.|.. +....+.+|+++.|.|.+.|.|.|.+.|+|+
T Consensus 1 ~~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~ 38 (98)
T cd05870 1 VQPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRA 38 (98)
T ss_pred CCCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEEC
Confidence 3567755 4567899999999999999999999999984
No 42
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.44 E-value=2.3e-07 Score=53.48 Aligned_cols=31 Identities=29% Similarity=0.526 Sum_probs=25.9
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+++.+|+|.|+|.|.|..| .....+.|.|
T Consensus 59 I~~v~~~D~G~Y~C~A~N~~G-~~~~sa~L~V 89 (90)
T cd04974 59 LRNVSFDDAGEYTCLAGNSIG-PSHHSAWLTV 89 (90)
T ss_pred EeccccccCcEEEEEeecccC-cccCCEEEEe
Confidence 567889999999999999999 5666777665
No 43
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.43 E-value=1.1e-06 Score=51.46 Aligned_cols=71 Identities=20% Similarity=0.358 Sum_probs=47.6
Q ss_pred eeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC-----CCCeeeeCCceeEeecCCcEEEEee
Q psy16421 50 DILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT-----VPPIVKIPSQLIGAHEGQQLVLECI 124 (151)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~-----~~p~~~~~~~~~~~~~g~~~~l~C~ 124 (151)
.|...+ +.+.+..|+.+.|.|.+.|.|.+.+.|+| +++.+....+.. ..-.+.+ ..+...+....+|.
T Consensus 2 ~~~~~p--~~~~v~~G~~v~l~C~~~G~p~p~v~W~k-dg~~l~~~~~~~~~~~~~~s~L~I----~~~~~~D~G~Ytc~ 74 (98)
T cd05762 2 QIIQFP--EDMKVRAGESVELFCKVTGTQPITCTWMK-FRKQIQEGEGIKIENTENSSKLTI----TEGQQEHCGCYTLE 74 (98)
T ss_pred ceEECC--cCEEEECCCEEEEEEEEcccCCCceEEEE-CCEEecCCCcEEEEecCCeeEEEE----CCCChhhCEEEEEE
Confidence 344445 67889999999999999999999999999 677765332110 0011111 12455777788888
Q ss_pred ecc
Q psy16421 125 SEA 127 (151)
Q Consensus 125 ~~g 127 (151)
+..
T Consensus 75 a~N 77 (98)
T cd05762 75 VEN 77 (98)
T ss_pred EEc
Confidence 753
No 44
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.42 E-value=5.6e-07 Score=53.03 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=31.7
Q ss_pred eeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421 110 LIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN 145 (151)
Q Consensus 110 ~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~ 145 (151)
...+..|+.+.|.|.+.|+|+|.+.|+|||.++..+
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~ 47 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIEN 47 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCC
Confidence 567889999999999999999999999998776543
No 45
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.42 E-value=1.6e-07 Score=52.30 Aligned_cols=30 Identities=27% Similarity=0.219 Sum_probs=24.6
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI 31 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 31 (151)
|.++.++|+|.|+|.|.|..| ..+..+.|.
T Consensus 45 I~~v~~~D~G~Y~C~A~N~~G-~~~~~a~L~ 74 (75)
T cd05893 45 IQGATKEDAGWYTVSAKNEAG-IVSCTARLD 74 (75)
T ss_pred ECCCCHHHCEEEEEEEEcCCC-EEEEEEEEe
Confidence 578999999999999999999 455555554
No 46
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.42 E-value=5.5e-07 Score=50.86 Aligned_cols=62 Identities=23% Similarity=0.605 Sum_probs=42.0
Q ss_pred CceEeecCCeEEEEeeecCCCCC-eEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPP-SIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~-~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g 127 (151)
.++.+.+|+.+.|.|.+.|.|.| .+.|++ +++++.... ....-.+.+.. ..+.....|.++.
T Consensus 6 ~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k-~g~~l~~~~-~~~~s~L~i~~------~~d~g~Y~C~A~N 68 (81)
T cd05749 6 EDLSVTANTPFNLTCQAVGPPEPVEILWWQ-GGSPLGDPP-APSPSVLNVPG------LNETSKFSCEAHN 68 (81)
T ss_pred CceEEcCCCCEEEEEEeeeecCCeEEEEEE-CCEECCCCC-CCCCCEEEEcc------ccCCeEEEEEEEe
Confidence 56788899999999999999999 799999 666654211 11112233222 1234589999865
No 47
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.42 E-value=2.4e-07 Score=53.55 Aligned_cols=32 Identities=38% Similarity=0.529 Sum_probs=27.2
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+++++|+|.|.|.|.|..|...+..+.|.|
T Consensus 59 I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 59 FNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred ECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 57899999999999999999976777777665
No 48
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.42 E-value=2.5e-07 Score=50.33 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=25.2
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.++..+|+|.|+|.|.|..| .....+.+++
T Consensus 35 i~~v~~~D~G~YtC~a~N~~g-~~~~~~~~~l 65 (67)
T cd05863 35 IKDVTEASAGTYTLVLWNSAA-GLEKRISLEL 65 (67)
T ss_pred ECCCCHHHCEEEEEEEEECCc-cEEEEEEEEE
Confidence 578999999999999999998 4555655554
No 49
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.41 E-value=5.6e-07 Score=51.15 Aligned_cols=34 Identities=9% Similarity=0.301 Sum_probs=30.0
Q ss_pred eEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 111 IGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 111 ~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~ 37 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQ 37 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCC
Confidence 4578899999999999999999999999877654
No 50
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.41 E-value=5.1e-07 Score=51.82 Aligned_cols=32 Identities=31% Similarity=0.333 Sum_probs=27.0
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 33 (151)
|.++..+|+|.|+|.|.|..| .....+.|.|.
T Consensus 51 I~~~~~~D~G~YtC~A~N~~G-~~~~~~~L~V~ 82 (88)
T cd05735 51 ILPTVREDSGFFSCHAINSYG-EDRGIIQLTVQ 82 (88)
T ss_pred ECCCCcccCEEEEEEEEcCCC-cceEEEEEEEe
Confidence 567889999999999999999 56677777774
No 51
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.40 E-value=5.1e-07 Score=50.33 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=25.9
Q ss_pred CCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 116 GQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 116 g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
|+.+.|.|.+.|.|.|.++|+|+|..+..
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~ 29 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEG 29 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCC
Confidence 78899999999999999999999876654
No 52
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.40 E-value=3.7e-07 Score=51.26 Aligned_cols=31 Identities=39% Similarity=0.587 Sum_probs=26.1
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI 31 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 31 (151)
|.++..+|+|.|.|.|.|..|...+..+.|+
T Consensus 48 I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 48 IKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred ECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 5688999999999999999997666666654
No 53
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.40 E-value=3.4e-07 Score=52.18 Aligned_cols=32 Identities=34% Similarity=0.507 Sum_probs=26.9
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 33 (151)
|.+++.+|+|.|+|.|.|..| ..+..+.|.|.
T Consensus 51 I~~v~~~D~G~Y~C~a~n~~g-~~~~~~~l~V~ 82 (85)
T cd04970 51 IRNAQLKHAGKYTCTAQTVVD-SLSASADLIVR 82 (85)
T ss_pred EccCCHHhCeeeEEEEecCCC-cEEEEEEEEEE
Confidence 578999999999999999988 56667777764
No 54
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.38 E-value=9.3e-07 Score=51.42 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=33.5
Q ss_pred CCeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421 101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM 142 (151)
Q Consensus 101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~ 142 (151)
+|.|.. .....+.+|+++.|.|.+.|.|.|.+.|++++..+
T Consensus 2 ~P~i~~-~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~ 42 (96)
T cd05732 2 QPKITY-LENQTAVELEQITLTCEAEGDPIPEITWRRATRNF 42 (96)
T ss_pred Ccccee-cCceeEecCCcEEEEEEEeEcCCCcEEEEECCccc
Confidence 466653 34567899999999999999999999999986443
No 55
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.37 E-value=2.8e-07 Score=51.32 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=24.3
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI 31 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 31 (151)
|.+++.+|+|.|+|.|.|..| ..+..+.|.
T Consensus 45 I~~~~~~D~G~Y~C~A~N~~G-~~~~~a~L~ 74 (75)
T cd05892 45 IKNVNKKDAGWYTVSAVNEAG-VATCHARLD 74 (75)
T ss_pred ECCCChhhCEEEEEEEEcCcC-eEEEEEEEe
Confidence 578999999999999999999 455555543
No 56
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.36 E-value=1.1e-06 Score=50.83 Aligned_cols=37 Identities=22% Similarity=0.430 Sum_probs=32.2
Q ss_pred CceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 108 SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 108 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
+..+.+.+|+.+.|.|.+.|.|.|.+.|+|++..+..
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~ 44 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIEL 44 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCC
Confidence 5567889999999999999999999999999776543
No 57
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.36 E-value=3.6e-07 Score=50.59 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=24.3
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI 31 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 31 (151)
|.+++++|+|.|+|.|.|..| .....+.|.
T Consensus 43 I~~v~~~D~G~Y~C~A~N~~G-~~~~~~~l~ 72 (73)
T cd05852 43 ILNITKLDEGSYTCFAENNRG-KANSTGVLS 72 (73)
T ss_pred ECcCChhHCEEEEEEEECCCC-ceeEEEEEE
Confidence 578999999999999999998 455555543
No 58
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.36 E-value=3.7e-07 Score=50.19 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=25.3
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+++.+|+|.|+|.|.|..| .....+.|.|
T Consensus 40 I~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~V 70 (71)
T cd05876 40 LDNVLESDDGEYVCTAENSEG-SARHHYTVTV 70 (71)
T ss_pred EcccCHHhCEEEEEEEEcCCC-eEEEEEEEEE
Confidence 568899999999999999999 4556666554
No 59
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.36 E-value=1.8e-06 Score=50.48 Aligned_cols=49 Identities=18% Similarity=0.366 Sum_probs=37.6
Q ss_pred CCeeeeCCceeEeecCCcEEEEeeecccCCCe-eEEEcCCceeccCCCCCC
Q psy16421 101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSV-NYWTREKGDMIANGKTPF 150 (151)
Q Consensus 101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~k~~~~~~~~~~~~~ 150 (151)
||.| .....+.+.+|+++.|.|.+.+.|+|. |.|++++..+..+...+|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~ 51 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERY 51 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCE
Confidence 5666 567778899999999999998888886 899887665544434444
No 60
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.33 E-value=1.7e-06 Score=51.66 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=32.7
Q ss_pred CCCeeeeCCceeEe----ecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421 100 VPPIVKIPSQLIGA----HEGQQLVLECISEAYPKSVNYWTREKGDMI 143 (151)
Q Consensus 100 ~~p~~~~~~~~~~~----~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~ 143 (151)
.+|.|...+....+ ..|.++.|.|.+.|.|.|.++|+|||..+.
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~ 50 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLD 50 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECC
Confidence 45666655442222 256899999999999999999999977664
No 61
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.33 E-value=5e-07 Score=52.05 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=26.1
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+++.+|+|.|+|.|.|..| .....+.|.|
T Consensus 59 I~~v~~~D~G~Y~C~A~N~~G-~~~~~a~L~V 89 (90)
T cd05858 59 LRNVTFEDAGEYTCLAGNSIG-ISHHSAWLTV 89 (90)
T ss_pred EccCCHHHCEEEEEEEEeCCC-cccceEEEEE
Confidence 578999999999999999999 5666666655
No 62
>PHA03376 BARF1; Provisional
Probab=98.33 E-value=1.8e-06 Score=55.59 Aligned_cols=73 Identities=26% Similarity=0.414 Sum_probs=44.1
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP 80 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~ 80 (151)
|.+++.+|.|.|+|..+..... .-..-.|.+ -.|-.+.......+ ....+...+.|...|.|.|
T Consensus 91 I~~l~lSDdGtY~C~fQkge~~-~~k~ehLt~-------------V~~~~Lsv~a~~~d--Fp~~~~~~i~C~sggfP~P 154 (221)
T PHA03376 91 VTAANISHDGNYLCRMKLGETE-VTKQEHLSV-------------VKPLTLSVHSERSQ--FPDFSVLTVTCTVNAFPHP 154 (221)
T ss_pred EEeeeecCCceEEEEEEcCCCc-eeeeeeeee-------------eecceEEEEecccc--CCCCCeeEEEEecCCcCCc
Confidence 5789999999999999886532 111111111 12222222111011 1124677889998899999
Q ss_pred eEEEEeCCe
Q psy16421 81 SIMWRREGG 89 (151)
Q Consensus 81 ~~~W~~~~~ 89 (151)
.++|+.++|
T Consensus 155 ~~~Wle~~~ 163 (221)
T PHA03376 155 HVQWLMPEG 163 (221)
T ss_pred hheeccccC
Confidence 999998655
No 63
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.32 E-value=5.8e-06 Score=47.33 Aligned_cols=73 Identities=26% Similarity=0.575 Sum_probs=50.2
Q ss_pred CeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCC-----CCCCeeeeCCceeEeecCCcEEEEe
Q psy16421 49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN-----TVPPIVKIPSQLIGAHEGQQLVLEC 123 (151)
Q Consensus 49 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~~~~g~~~~l~C 123 (151)
|.|...+ ..+.+.+|+++.|.|.+.+.|.+.+.|++ ++..+....+. .....+.+. .+...+.....|
T Consensus 1 P~~~~~~--~~~~v~~G~~~~l~c~~~~~p~~~v~W~~-~~~~l~~~~~~~~~~~~~~~~L~I~----~v~~~D~G~Y~C 73 (90)
T PF07679_consen 1 PVFTKKP--KDVTVKEGESVTLECEVSGNPPPTVTWYK-NGRPLTSSQRYQIESDGGSSSLTIK----NVTREDAGTYTC 73 (90)
T ss_dssp EEEEEES--SEEEEETTSEEEEEEEEEESSSSEEEEEE-TTEEEESSSSEEEEEETTEEEEEES----SESGGGSEEEEE
T ss_pred CEEEEec--CCEEEeCCCEEEEEEEEEeCCCCcccccc-cccceeeeeeeeeecccceeEEccC----CCChhhCEEEEE
Confidence 3444445 67889999999999999999999999999 57776653320 111112222 255678889999
Q ss_pred eeccc
Q psy16421 124 ISEAY 128 (151)
Q Consensus 124 ~~~g~ 128 (151)
.+...
T Consensus 74 ~~~n~ 78 (90)
T PF07679_consen 74 VASNS 78 (90)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 88653
No 64
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.32 E-value=4.8e-07 Score=52.37 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=25.5
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.++..+|+|.|+|.|.|..|....+.+.|.+
T Consensus 60 I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 60 IYNANIEDAGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred EecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 57889999999999999999865555555543
No 65
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.31 E-value=6.3e-07 Score=49.78 Aligned_cols=31 Identities=35% Similarity=0.534 Sum_probs=25.4
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+++.+|+|.|.|.|.|..| ..+..+.|.|
T Consensus 44 I~~~~~~D~G~Y~C~A~N~~G-~~~~~~~l~V 74 (75)
T cd05763 44 IVDVKIEDTGVYSCTAQNTAG-SISANATLTV 74 (75)
T ss_pred EeeCCcccCEEEEEEEEcCCC-EEEeeEEEEE
Confidence 568899999999999999998 5566666654
No 66
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.31 E-value=1.6e-05 Score=46.11 Aligned_cols=59 Identities=19% Similarity=0.366 Sum_probs=37.8
Q ss_pred cCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeE---e-ecCCcEEEEeeecc
Q psy16421 64 EGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIG---A-HEGQQLVLECISEA 127 (151)
Q Consensus 64 ~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~-~~g~~~~l~C~~~g 127 (151)
+|+.+.|.|.+.|.|.|.+.|++ ++..+..... ..+........ + ...+.....|.+..
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k-~g~~l~~~~~----~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLR-NGTEIDTESD----YRYSLIDGNLIISNPSEVKDSGRYQCLATN 80 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEE-CCeECccCCC----ceEEeeCCeEEEccCCccCcCEEEEEEEEc
Confidence 47899999999999999999999 5666542110 11111111111 1 23677889999864
No 67
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.31 E-value=1.1e-06 Score=48.70 Aligned_cols=29 Identities=24% Similarity=0.605 Sum_probs=25.4
Q ss_pred CCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 116 GQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 116 g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
|+++.|.|.+.|.|.|.+.|+|++..+..
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~ 29 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVN 29 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEeccc
Confidence 68899999999999999999998765543
No 68
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.30 E-value=1.2e-06 Score=48.19 Aligned_cols=28 Identities=18% Similarity=0.500 Sum_probs=24.3
Q ss_pred cEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421 118 QLVLECISEAYPKSVNYWTREKGDMIAN 145 (151)
Q Consensus 118 ~~~l~C~~~g~p~~~~~W~k~~~~~~~~ 145 (151)
++.|.|.+.|.|.|.++|+|+|..+...
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~ 28 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPS 28 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCC
Confidence 4789999999999999999998776543
No 69
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.30 E-value=1.1e-06 Score=48.78 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=26.3
Q ss_pred CCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421 116 GQQLVLECISEAYPKSVNYWTREKGDMIAN 145 (151)
Q Consensus 116 g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~ 145 (151)
|+++.|.|.+.|.|.|.+.|+++|..+...
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~ 30 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEEL 30 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCC
Confidence 788999999999999999999998766543
No 70
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.30 E-value=1.7e-06 Score=50.48 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=30.8
Q ss_pred eCCceeEeecCCcEEEEeeecccCC-CeeEEEc-CCceecc
Q psy16421 106 IPSQLIGAHEGQQLVLECISEAYPK-SVNYWTR-EKGDMIA 144 (151)
Q Consensus 106 ~~~~~~~~~~g~~~~l~C~~~g~p~-~~~~W~k-~~~~~~~ 144 (151)
+.+....+..|+++.|.|.+.|.|. |.++|++ +|..+..
T Consensus 5 ~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~ 45 (96)
T cd05865 5 IVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTP 45 (96)
T ss_pred EeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccc
Confidence 4455567899999999999999995 7999998 6544443
No 71
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.30 E-value=2.1e-06 Score=48.83 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=31.6
Q ss_pred CceeEeecCCcEEEEeee-cccCCCeeEEEcCCceecc
Q psy16421 108 SQLIGAHEGQQLVLECIS-EAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 108 ~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~k~~~~~~~ 144 (151)
+....+.+|+++.|.|.+ .|.|.|.+.|+|+|..+..
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~ 40 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNL 40 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCC
Confidence 456678899999999998 7999999999999776654
No 72
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.30 E-value=2.2e-06 Score=49.56 Aligned_cols=74 Identities=24% Similarity=0.552 Sum_probs=48.9
Q ss_pred CCCeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCC-----CeeeeCCceeEeecCCcEEE
Q psy16421 47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVP-----PIVKIPSQLIGAHEGQQLVL 121 (151)
Q Consensus 47 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~-----p~~~~~~~~~~~~~g~~~~l 121 (151)
.||.+...+ ....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....+.... -.+.+. .+...+....
T Consensus 2 ~~~~~~~~p--~~~~~~~G~~~~L~C~~~g~P~p~v~W~k-~g~~l~~~~~~~~~~~~~~~~L~i~----~~~~~D~G~Y 74 (92)
T cd05747 2 LPATILTKP--RSLTVSEGESARFSCDVDGEPAPTVTWMR-EGQIIVSSQRHQITSTEYKSTFEIS----KVQMSDEGNY 74 (92)
T ss_pred CCCcccccC--ccEEEeCCCcEEEEEEEeecCCCEEEEEE-CCEECCCCCcEEEEEcCCeeEEEEC----CCCcccCEeE
Confidence 356666666 67889999999999999999999999999 55554322110000 011111 2445777888
Q ss_pred Eeeecc
Q psy16421 122 ECISEA 127 (151)
Q Consensus 122 ~C~~~g 127 (151)
.|.+..
T Consensus 75 ~C~a~N 80 (92)
T cd05747 75 TVVVEN 80 (92)
T ss_pred EEEEEc
Confidence 888753
No 73
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.30 E-value=9e-07 Score=49.07 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=26.6
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus 42 i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 42 IENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred ECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 56889999999999999999966666666655
No 74
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.30 E-value=2.6e-06 Score=49.14 Aligned_cols=42 Identities=12% Similarity=0.245 Sum_probs=31.7
Q ss_pred CeeeeCCceeEee---cCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421 102 PIVKIPSQLIGAH---EGQQLVLECISEAYPKSVNYWTREKGDMI 143 (151)
Q Consensus 102 p~~~~~~~~~~~~---~g~~~~l~C~~~g~p~~~~~W~k~~~~~~ 143 (151)
|.|...+..+.+. .|.++.|.|.+.|.|.|.++|+|++..+.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~ 46 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEID 46 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECC
Confidence 4555555555443 34679999999999999999999977663
No 75
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.30 E-value=5.1e-07 Score=50.04 Aligned_cols=30 Identities=30% Similarity=0.337 Sum_probs=24.2
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI 31 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 31 (151)
|.+++.+|+|.|+|.|.|..| .....+.|.
T Consensus 44 I~~v~~~D~G~Y~C~A~N~~G-~~~~~~~L~ 73 (74)
T cd05745 44 ISRVALHDQGQYECQAVNIVG-SQRTVAQLT 73 (74)
T ss_pred EeeCCHHhCEEEEEEEEeCCC-ceeEEEEEe
Confidence 578999999999999999998 455555543
No 76
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.29 E-value=7.4e-07 Score=51.60 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=24.2
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI 31 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 31 (151)
|.+++.+|+|.|+|.|.|..|......+.|+
T Consensus 61 I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~ 91 (92)
T cd04977 61 IYNANIEDAGIYKCVATDAKGTESEATVNLK 91 (92)
T ss_pred EecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence 5789999999999999999775555555543
No 77
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.29 E-value=5.7e-07 Score=49.09 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=23.8
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI 31 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 31 (151)
|.+++.+|+|.|+|.|.|..| .....+.|.
T Consensus 39 I~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~ 68 (69)
T cd05725 39 IRNVTAGDEGSYTCEAENMVG-KIEASASLT 68 (69)
T ss_pred ECcCChhHCEEEEEEEEcCCC-cEEEEEEEE
Confidence 578999999999999999998 444554443
No 78
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.29 E-value=6.5e-07 Score=49.79 Aligned_cols=30 Identities=27% Similarity=0.233 Sum_probs=24.1
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI 31 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 31 (151)
|.+++.+|+|.|+|.|.|..| .....+.|.
T Consensus 45 I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~ 74 (75)
T cd05744 45 IQNANKEDAGWYTVSAVNEAG-VVSCNARLD 74 (75)
T ss_pred ECCCCcccCEEEEEEEEcCCC-cEEEEEEEe
Confidence 578999999999999999999 455555543
No 79
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.29 E-value=2.2e-05 Score=45.53 Aligned_cols=72 Identities=19% Similarity=0.384 Sum_probs=43.5
Q ss_pred CeeEeCCCCCceEeec---CCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEe---e-cCCcEEE
Q psy16421 49 PDILDYPTSSDIMVRE---GSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGA---H-EGQQLVL 121 (151)
Q Consensus 49 p~~~~~~~~~~~~~~~---g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~-~g~~~~l 121 (151)
|.|...| ..+.+.+ |+.+.|.|.+.|+|.|.+.|++ ++..+..... ..+........+ . ..+....
T Consensus 2 P~f~~~P--~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~-~g~~l~~~~~----~~~~~~~g~L~I~~~~~~~D~G~Y 74 (94)
T cd05850 2 PVFEEQP--SSLLFPEGSPEEKVTLGCRARASPPATYRWKM-NGTEIKFAPE----SRYTLVAGNLVINNPQKARDAGSY 74 (94)
T ss_pred CeeEECC--CCEEecCCCCCCeEEEEeEceeCCCCEEEEEE-CCEECccCCC----ceEEEECCeEEEccCCccCcCEEE
Confidence 4444444 3444444 4689999999999999999999 5666542211 111111111111 2 3678889
Q ss_pred Eeeecc
Q psy16421 122 ECISEA 127 (151)
Q Consensus 122 ~C~~~g 127 (151)
.|.+..
T Consensus 75 ~C~A~N 80 (94)
T cd05850 75 QCLAIN 80 (94)
T ss_pred EEEEEc
Confidence 999863
No 80
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.28 E-value=1.2e-06 Score=50.47 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=27.7
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 33 (151)
|.+++.+|+|.|+|.|.|..| .....+.|.|.
T Consensus 51 I~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~V~ 82 (90)
T cd05726 51 ITNVQRSDVGYYICQTLNVAG-SILTKAYLEVT 82 (90)
T ss_pred EeeCChhhCEEEEEEEEcCCC-ceEEEEEEEEe
Confidence 578999999999999999999 56677888775
No 81
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.27 E-value=9.3e-07 Score=51.59 Aligned_cols=32 Identities=16% Similarity=0.329 Sum_probs=24.5
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+++.+|+|.|+|.|.|..+......+.|.|
T Consensus 64 I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 64 IYNANIDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred EeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 56899999999999999997435555555543
No 82
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.27 E-value=6.8e-07 Score=49.14 Aligned_cols=30 Identities=33% Similarity=0.512 Sum_probs=23.5
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI 31 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 31 (151)
|.+++.+|+|.|+|.|.|..| .....+.|.
T Consensus 41 i~~v~~~D~G~Y~C~A~N~~G-~~~~~~~L~ 70 (71)
T cd05723 41 VLGLVKSDEGFYQCIAENDVG-NVQASAQLI 70 (71)
T ss_pred EEcCCcccCEEEEEEEEcCCC-EEEEEEEEE
Confidence 357899999999999999999 455555543
No 83
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.27 E-value=8.5e-07 Score=49.09 Aligned_cols=30 Identities=20% Similarity=0.219 Sum_probs=24.0
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI 31 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 31 (151)
|.++..+|+|.|+|.|.|..| ..+..+.|.
T Consensus 44 I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~ 73 (74)
T cd05748 44 IKNAERSDSGKYTLTLKNPAG-EKSATINVK 73 (74)
T ss_pred ECCCCcCcCEEEEEEEECCCc-cEEEEEEEE
Confidence 568999999999999999998 455555543
No 84
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.26 E-value=7.6e-07 Score=49.19 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=23.9
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI 31 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 31 (151)
|.+++++|+|.|+|.|.|..| .....+.|.
T Consensus 43 i~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~ 72 (73)
T cd04969 43 ILNVTKSDEGKYTCFAENFFG-KANSTGSLS 72 (73)
T ss_pred EccCChhHCEEEEEEEECCCC-ceEEEEEEE
Confidence 578999999999999999998 444554443
No 85
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.25 E-value=8.1e-07 Score=48.64 Aligned_cols=31 Identities=39% Similarity=0.562 Sum_probs=24.8
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+++.+|+|.|+|.|.|..| .....+.|.|
T Consensus 40 i~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~V 70 (71)
T cd05731 40 IDNVSEEDDGEYRCTASNSLG-SARHTISVTV 70 (71)
T ss_pred ECCCCHHHCEEEEEEEEeCCc-eEEEEEEEEE
Confidence 568899999999999999998 4555555544
No 86
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.25 E-value=9.1e-07 Score=48.66 Aligned_cols=31 Identities=23% Similarity=0.506 Sum_probs=24.3
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+++.+|+|.|+|.|.|..| .....+.+.+
T Consensus 39 I~~v~~~D~G~YtC~a~N~~g-~~~~~~~~~~ 69 (71)
T cd04976 39 IKDVTEEDAGNYTVVLTNKQA-KLEKRLTFTL 69 (71)
T ss_pred ECcCCHHHCEEEEEEEEcCCc-cEEEEEEEEE
Confidence 578999999999999999988 4445555443
No 87
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.25 E-value=1.2e-06 Score=48.70 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=22.6
Q ss_pred EEEEeeecccCCCeeEEEcCCceecc
Q psy16421 119 LVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 119 ~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
+.|.|.+.|.|.|.+.|+|+|..+..
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~ 26 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQY 26 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcC
Confidence 47999999999999999999776653
No 88
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.24 E-value=2e-06 Score=48.13 Aligned_cols=28 Identities=18% Similarity=0.564 Sum_probs=25.0
Q ss_pred CCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421 116 GQQLVLECISEAYPKSVNYWTREKGDMI 143 (151)
Q Consensus 116 g~~~~l~C~~~g~p~~~~~W~k~~~~~~ 143 (151)
|+++.|.|.+.|.|.|.+.|++++..+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~ 28 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVP 28 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECC
Confidence 6889999999999999999999876654
No 89
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.24 E-value=9.9e-06 Score=46.33 Aligned_cols=66 Identities=30% Similarity=0.551 Sum_probs=41.5
Q ss_pred CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g 127 (151)
....+.+|+.+.|.|.+.|.|.|.+.|++++.............-.+.+. .+...+.....|.+..
T Consensus 9 ~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~----~v~~~D~G~Y~C~a~N 74 (88)
T cd04968 9 KDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIP----NIQFEDEGTYECEAEN 74 (88)
T ss_pred CceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEEC----CCCcccCEEEEEEEEE
Confidence 56678899999999999999999999999543221110000000111111 2345777889998753
No 90
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.23 E-value=1.3e-06 Score=48.67 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=25.3
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+++++|+|.|.|.|.|..| .....+.|.|
T Consensus 45 I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~V 75 (76)
T cd05867 45 LTDVQPSDTAVYQCEARNRHG-NLLANAHVHV 75 (76)
T ss_pred ECCCChhhCEEEEEEEECCCC-eEEEEEEEEE
Confidence 578999999999999999998 4555666654
No 91
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.23 E-value=1.4e-06 Score=48.46 Aligned_cols=26 Identities=23% Similarity=0.603 Sum_probs=22.7
Q ss_pred EEEEeeecccCCCeeEEEcCCceecc
Q psy16421 119 LVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 119 ~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
+.|.|.+.|.|.|.++|+|++..+..
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~ 26 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTH 26 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCC
Confidence 47999999999999999999776653
No 92
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.23 E-value=1.2e-06 Score=47.64 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=22.1
Q ss_pred EEEEeeecccCCCeeEEEcCCceec
Q psy16421 119 LVLECISEAYPKSVNYWTREKGDMI 143 (151)
Q Consensus 119 ~~l~C~~~g~p~~~~~W~k~~~~~~ 143 (151)
+.|.|.+.|.|+|.+.|+|||..+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~ 25 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLIS 25 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECc
Confidence 4689999999999999999987664
No 93
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.22 E-value=1.4e-06 Score=47.79 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.9
Q ss_pred CccccccCCeEEEEEEEcCCCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVPP 22 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~ 22 (151)
|.++..+|+|.|+|.|.|..|.
T Consensus 38 I~~v~~~D~G~YtC~a~N~~G~ 59 (70)
T cd05864 38 IYEVTEKDAGNYTVVLTNPITK 59 (70)
T ss_pred ECcCCHHHCEEEEEEEEECCCc
Confidence 5688999999999999999983
No 94
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.22 E-value=1.5e-06 Score=49.10 Aligned_cols=29 Identities=28% Similarity=0.267 Sum_probs=22.8
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIML 30 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l 30 (151)
|.+++.+|+|.|+|.|.|..| .....+.+
T Consensus 50 I~~~~~~D~G~YtC~A~N~~G-~~~~~~~~ 78 (81)
T cd04971 50 FDNPTHVNNGNYTLVASNEYG-QDSKSISA 78 (81)
T ss_pred ECCCCcccCeEEEEEEEeCCC-CeeeEEEe
Confidence 467899999999999999999 44444433
No 95
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.22 E-value=1.8e-06 Score=48.51 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=22.8
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIML 30 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l 30 (151)
|.++..+|+|.|+|.|.|..| .....+.+
T Consensus 48 i~~~~~~D~G~YtC~A~N~~G-~~~~~~~~ 76 (79)
T cd05855 48 LDNPTHLNNGIYTLVAKNEYG-EDEKNVSA 76 (79)
T ss_pred ECCCCcccCEEEEEEEEcCCc-ccceEEEe
Confidence 567889999999999999999 44444443
No 96
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.22 E-value=1.3e-06 Score=49.67 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=24.9
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+++.+|+|.|.|.|.|..+ ..+....|.|
T Consensus 53 I~~v~~~DsG~Y~C~a~n~~~-~~~~s~~v~v 83 (84)
T cd05742 53 IPNATLKDSGTYTCAASSGTM-DQKESTKVNI 83 (84)
T ss_pred ECCCChhhCEEEEEEEccCCC-ceEEEEEEEE
Confidence 578999999999999999988 4555555544
No 97
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.21 E-value=3.1e-05 Score=43.38 Aligned_cols=60 Identities=18% Similarity=0.393 Sum_probs=42.7
Q ss_pred CceEeecCCeEEEEeeecCCCC-CeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeeccc
Q psy16421 58 SDIMVREGSNVSMRCAASGSPP-PSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAY 128 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~-~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~ 128 (151)
....+.+|+++.|.|.+.+.|. ..+.|++ +++.+... ...+.+. .+ ..+.....|.+.+.
T Consensus 8 ~~~~v~~G~~V~L~C~~~~~p~~~~~~W~k-ng~~l~~~-----~~~l~i~----~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 8 PWTTIFQGEKVTLTCNGFNSPEQNSTQWYH-NGKLLETT-----TNSYRIR----AA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CCeEeeCCCCEEEEEeCCCCCCCccEEEEE-CCEEeecc-----CCeEEEe----ec-ccCCEEeEEECCCC
Confidence 4577889999999999998775 5799999 66665321 1233322 23 77888999998753
No 98
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.20 E-value=1.7e-06 Score=48.38 Aligned_cols=24 Identities=25% Similarity=0.608 Sum_probs=21.6
Q ss_pred EEEEeeecccCCCeeEEEcCCcee
Q psy16421 119 LVLECISEAYPKSVNYWTREKGDM 142 (151)
Q Consensus 119 ~~l~C~~~g~p~~~~~W~k~~~~~ 142 (151)
+.|.|.+.|.|.|.++|+|+|..+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l 24 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHF 24 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeEC
Confidence 479999999999999999998765
No 99
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.19 E-value=1.7e-06 Score=48.36 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=22.0
Q ss_pred EEEEeeecccCCCeeEEEcCCceec
Q psy16421 119 LVLECISEAYPKSVNYWTREKGDMI 143 (151)
Q Consensus 119 ~~l~C~~~g~p~~~~~W~k~~~~~~ 143 (151)
+.|.|.+.|.|.|.++|+|+|..+.
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~ 25 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFD 25 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECC
Confidence 4789999999999999999977654
No 100
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.19 E-value=1.6e-06 Score=48.35 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=25.4
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+++.+|+|.|+|.|.|..| .....+.|.|
T Consensus 45 i~~v~~~D~G~Y~C~A~N~~G-~~~~~~~l~v 75 (76)
T cd05868 45 FSKVQERSSAVYQCNASNEYG-YLLANAFVNV 75 (76)
T ss_pred ECCCCHhhCEEEEEEEEcCCC-EEEEEEEEEe
Confidence 467899999999999999999 5666666654
No 101
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.18 E-value=1.7e-06 Score=48.05 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=25.1
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+++.+|+|.|+|.|.|..| .....+.|.|
T Consensus 45 i~~v~~~D~G~Y~C~A~N~~G-~~~~~~~l~V 75 (76)
T cd04978 45 LSNVQPNDTAVYQCNASNVHG-YLLANAFVHV 75 (76)
T ss_pred ECCCChhhCEEEEEEEEccCC-eEEEeEEEEE
Confidence 568899999999999999998 4556666554
No 102
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.18 E-value=1.5e-06 Score=49.48 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=25.1
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI 31 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 31 (151)
|.+++.+|+|.|+|.+.|..|...+..+.|.
T Consensus 55 I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 85 (86)
T cd05724 55 IAEARKSDEGTYKCVATNMVGERESAAARLS 85 (86)
T ss_pred EeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence 5688999999999999999986556555543
No 103
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.18 E-value=2e-06 Score=48.10 Aligned_cols=24 Identities=25% Similarity=0.573 Sum_probs=21.3
Q ss_pred EEEEeeecccCCCeeEEEcCCcee
Q psy16421 119 LVLECISEAYPKSVNYWTREKGDM 142 (151)
Q Consensus 119 ~~l~C~~~g~p~~~~~W~k~~~~~ 142 (151)
+.|.|.+.|+|.|.++|+|+|..+
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~ 24 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFF 24 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEc
Confidence 469999999999999999997654
No 104
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.17 E-value=1.4e-06 Score=48.99 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=23.9
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI 31 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 31 (151)
|.+++.+|+|.|.|.|.|..| .....+.|.
T Consensus 51 I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~ 80 (81)
T cd05765 51 IYNAQPQDAGLYTCTARNSGG-LLRANFPLS 80 (81)
T ss_pred EccCCcccCEEEEEEEecCCc-eEEEEEEEe
Confidence 567899999999999999999 455555543
No 105
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.17 E-value=3.3e-06 Score=47.44 Aligned_cols=34 Identities=18% Similarity=0.499 Sum_probs=29.0
Q ss_pred eEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 111 IGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 111 ~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
+....|+++.|.|.+.|.|.|.++|+|++..+..
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~ 37 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTP 37 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcC
Confidence 3467799999999999999999999999776543
No 106
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.16 E-value=7.5e-06 Score=47.48 Aligned_cols=71 Identities=21% Similarity=0.279 Sum_probs=42.0
Q ss_pred CeeEeCCCCCceEeec---CCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEe----ecCCcEEE
Q psy16421 49 PDILDYPTSSDIMVRE---GSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGA----HEGQQLVL 121 (151)
Q Consensus 49 p~~~~~~~~~~~~~~~---g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~g~~~~l 121 (151)
|.|...| ....+.+ +..+.|.|.+.|.|.|.+.|++ ++..+.... ..+........+ ...+....
T Consensus 2 P~f~~~P--~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k-~~~~i~~~~-----~~~~~~~g~L~I~~~~~~~D~G~Y 73 (93)
T cd05849 2 PVFEEQP--IDTIYPEESTEGKVSVNCRARANPFPIYKWRK-NNLDIDLTN-----DRYSMVGGNLVINNPDKYKDAGRY 73 (93)
T ss_pred CEEEECC--CCEEecCCccCCeEEEeCcCccCCCCEEEEEE-CCEEccCCC-----CeEEEECCEEEECcCCcCCCCEEE
Confidence 4455444 3333333 3479999999999999999999 555543211 111111111111 23688889
Q ss_pred Eeeecc
Q psy16421 122 ECISEA 127 (151)
Q Consensus 122 ~C~~~g 127 (151)
.|.+..
T Consensus 74 ~C~A~N 79 (93)
T cd05849 74 VCIVSN 79 (93)
T ss_pred EEEEEe
Confidence 999864
No 107
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.16 E-value=3.8e-06 Score=46.33 Aligned_cols=29 Identities=24% Similarity=0.579 Sum_probs=25.6
Q ss_pred CCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 116 GQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 116 g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
|+++.|.|.+.|.|.|.++|+|++..+..
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~ 29 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTN 29 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEccc
Confidence 68899999999999999999999776543
No 108
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.15 E-value=1.6e-06 Score=47.32 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=22.0
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccce
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRI 28 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~ 28 (151)
|.+++.+|+|.|+|.|.|..|. .+..+
T Consensus 40 I~~~~~~D~G~Y~C~a~N~~G~-~~~~~ 66 (69)
T cd05746 40 IRDVGVADQGRYECVARNTIGY-ASVSM 66 (69)
T ss_pred ECcCChhhCEEEEEEEECCCCc-EEEEE
Confidence 5688999999999999999994 44443
No 109
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.15 E-value=2.6e-06 Score=47.17 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=21.9
Q ss_pred EEEEeeecccCCCeeEEEcCCceec
Q psy16421 119 LVLECISEAYPKSVNYWTREKGDMI 143 (151)
Q Consensus 119 ~~l~C~~~g~p~~~~~W~k~~~~~~ 143 (151)
+.|.|.+.|.|.|.++|+|++..+.
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~ 25 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVD 25 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECc
Confidence 4799999999999999999976654
No 110
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.14 E-value=5.9e-06 Score=47.97 Aligned_cols=65 Identities=25% Similarity=0.473 Sum_probs=42.9
Q ss_pred CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccC----CCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN----NTVPPIVKIPSQLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g 127 (151)
....+..|+++.|.|.+.|.|.|.+.|++ +++.+..... ......+.+. .+...+.....|.+..
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k-~g~~~~~~~~~~~~~~~~~~L~I~----~v~~~D~G~Y~C~a~N 79 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEPTMTWTK-DGEPIESGEEKYSFNEDGSEMTIL----DVDKLDEAEYTCIAEN 79 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCCEEEEEE-CCEECcCCCCEEEEeCCCCEEEEC----CCChhhCEEEEEEEEc
Confidence 34577889999999999999999999999 5665543210 0001112221 2345677889998864
No 111
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.13 E-value=3.8e-06 Score=47.14 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=28.9
Q ss_pred ceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 109 QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 109 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
....+.+|+.+.|.|.+.+. .+.+.|+|||..+..
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~ 36 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGE 36 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCC
Confidence 45568899999999999996 568999999876644
No 112
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.13 E-value=9.5e-06 Score=47.77 Aligned_cols=69 Identities=20% Similarity=0.376 Sum_probs=46.0
Q ss_pred CceEeecCCeEEEEeeecC-CCCCeEEEEeCCeeeEecccCCCCCC------eeeeCCceeEeecCCcEEEEeeecc
Q psy16421 58 SDIMVREGSNVSMRCAASG-SPPPSIMWRREGGEMITNSFNNTVPP------IVKIPSQLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g-~~~~~~~W~~~~~~~~~~~~~~~~~p------~~~~~~~~~~~~~g~~~~l~C~~~g 127 (151)
..+.+.+|+++.|.|.+.| .|+|.+.|+| |+.++.......... ..........+...+....+|.+..
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~K-dg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N 86 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTY-DNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASN 86 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEe-CCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEEC
Confidence 4577889999999999999 8999999999 777765322100000 0011122234567888899999864
No 113
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.13 E-value=9.4e-06 Score=46.96 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=30.4
Q ss_pred eeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCce
Q psy16421 104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGD 141 (151)
Q Consensus 104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~ 141 (151)
+.+.+....+.+|+++.|.|.+.|.|. .+.|+++++.
T Consensus 3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~ 39 (92)
T cd05866 3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGE 39 (92)
T ss_pred EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCe
Confidence 345566778999999999999999998 8999985443
No 114
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.12 E-value=7.2e-06 Score=47.37 Aligned_cols=65 Identities=17% Similarity=0.374 Sum_probs=43.1
Q ss_pred CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCC----C--CeeeeCCceeEeecCCcEEEEeeecc
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV----P--PIVKIPSQLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~----~--p~~~~~~~~~~~~~g~~~~l~C~~~g 127 (151)
..+.+.+|+++.|.|.+.|.|.|.+.|++ +++.+....+... . -.+.+. .+...+.....|.+..
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k-~g~~l~~~~~~~~~~~~~~~~~L~I~----~v~~~D~G~Y~C~a~N 79 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLK-NDQALALSDHYNVKVEQGKYASLTIK----GVSSEDSGKYGIVVKN 79 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCCeEEEEE-CCEECccCCCEEEEEcCCCEEEEEEc----cCChhhCEEEEEEEEE
Confidence 45678899999999999999999999999 5666543221000 0 011111 2445777788898763
No 115
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.12 E-value=3.2e-06 Score=47.24 Aligned_cols=32 Identities=22% Similarity=0.437 Sum_probs=24.6
Q ss_pred CccccccCCeEEEEEEEcCCCCCC-ccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSV-SKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~-~~~~~l~v 32 (151)
|.+++++|+|.|.|.|.|..|... +..++|.|
T Consensus 42 I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 42 LRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred EeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 567899999999999999999532 34555554
No 116
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.12 E-value=3.6e-06 Score=46.76 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=22.5
Q ss_pred EEEEeeecccCCCeeEEEcCCceecc
Q psy16421 119 LVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 119 ~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
+.|.|.+.|.|.|.++|+|++..+..
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~ 26 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTY 26 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCC
Confidence 47999999999999999999776643
No 117
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.12 E-value=2.3e-06 Score=48.58 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=26.2
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+++.+|+|.|+|.+.+..+...+..+.|+|
T Consensus 52 I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 52 IPQATLSDSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred ECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence 56789999999999999999866666666653
No 118
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.11 E-value=5.5e-06 Score=47.51 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=25.5
Q ss_pred CCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 116 GQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 116 g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
|+.+.|.|.+.|.|++.+.|+|++..+..
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~ 29 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINP 29 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCC
Confidence 78999999999999999999999765543
No 119
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.11 E-value=9.2e-06 Score=47.19 Aligned_cols=35 Identities=40% Similarity=0.952 Sum_probs=30.1
Q ss_pred CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEe
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMIT 93 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~ 93 (151)
.+..+.+|+.+.|.|.+.|.|.|.+.|++ +++.+.
T Consensus 7 ~~~~~~~g~~v~l~C~v~g~P~p~i~W~k-~g~~l~ 41 (95)
T cd05722 7 SDIVAVRGGPVVLNCSAEGEPPPKIEWKK-DGVLLN 41 (95)
T ss_pred CCeEEcCCCCEEEeeecccCCCCEEEEEE-CCeECc
Confidence 45677789999999999999999999999 666655
No 120
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.10 E-value=2.2e-06 Score=47.40 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=23.2
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI 31 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 31 (151)
|.+++.+|+|.|+|.|.|..| ..+..+.|+
T Consensus 44 i~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~ 73 (74)
T cd05764 44 ILITTVKDTGSFTCIASNAAG-EATATVELH 73 (74)
T ss_pred EEECChhhCEEEEEEEECCCC-eEEEEEEEE
Confidence 457889999999999999998 445555443
No 121
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.10 E-value=3.7e-06 Score=46.95 Aligned_cols=26 Identities=19% Similarity=0.507 Sum_probs=22.6
Q ss_pred EEEEeeecccCCCeeEEEcCCceecc
Q psy16421 119 LVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 119 ~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
+.|.|.+.|.|.|.+.|+|+|..+..
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~ 26 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSD 26 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCC
Confidence 47999999999999999999876543
No 122
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.09 E-value=6.4e-06 Score=47.95 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=29.7
Q ss_pred ceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421 109 QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM 142 (151)
Q Consensus 109 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~ 142 (151)
....+.+|+++.|.|.+.|.|.|.+.|+|+++.+
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~ 38 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQT 38 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccE
Confidence 4567899999999999999999999999987543
No 123
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.08 E-value=9.1e-06 Score=46.40 Aligned_cols=66 Identities=23% Similarity=0.377 Sum_probs=43.7
Q ss_pred CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeC-----CceeEeecCCcEEEEeeecc
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIP-----SQLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~~~g~~~~l~C~~~g 127 (151)
..+.+.+|+.+.|.|.+.|.|.|.+.|++ +++++..... .-.+... ..-..+...+.....|.+..
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k-~~~~i~~~~~---r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N 73 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSR-GDKAFTETEG---RVRVESYKDLSSFVIEGAEREDEGVYTITVTN 73 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEE-CCEECccCCC---eEEEEEcCCeEEEEECCCccCcCEEEEEEEEe
Confidence 45678899999999999999999999999 6666653210 0011100 01112456777888998753
No 124
>KOG3515|consensus
Probab=98.08 E-value=9.6e-06 Score=62.38 Aligned_cols=125 Identities=24% Similarity=0.405 Sum_probs=74.0
Q ss_pred cccccCCeEEEEEEEcCCCC--CCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeee-cCCCC
Q psy16421 3 EVSREHMGAYLCIASNGVPP--SVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAA-SGSPP 79 (151)
Q Consensus 3 ~v~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~~~ 79 (151)
....+|.|+|+|.|.|.... .......+.+. .....+............+|+.+.|.|.+ .|+|.
T Consensus 169 v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~------------~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~ 236 (741)
T KOG3515|consen 169 VSRKADNGNYTCPANNRNSPGLSFAKQLTIIVE------------APCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPS 236 (741)
T ss_pred EEEecCCceeEcccccccCccccccceeEeecc------------cccccceecchhhcCcccccceEEEEehhhcCCcc
Confidence 45567899999999885332 22233333332 11122212111122456689999999985 55899
Q ss_pred CeEEEEeCCeeeEecccC--------------------------------C----------CCCC-eeeeCCceeEeecC
Q psy16421 80 PSIMWRREGGEMITNSFN--------------------------------N----------TVPP-IVKIPSQLIGAHEG 116 (151)
Q Consensus 80 ~~~~W~~~~~~~~~~~~~--------------------------------~----------~~~p-~~~~~~~~~~~~~g 116 (151)
+.+.|++ +.+.....+. + ..++ ...+......+..|
T Consensus 237 ~~~~w~~-~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~tav~~~~~~~~Ist~~~~ls~g 315 (741)
T KOG3515|consen 237 QQQTWYK-DSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITAVQVKPTAVPISTSDSGLSSG 315 (741)
T ss_pred hhhhhcc-ccccchhhhcccCCCCCCcccccccccccccchhhhhhccccCccccceeeecccccccccccCcccccccc
Confidence 9999999 4554443211 1 0011 11122333447789
Q ss_pred CcEEEEeee-cccCCCeeEEEcCCc
Q psy16421 117 QQLVLECIS-EAYPKSVNYWTREKG 140 (151)
Q Consensus 117 ~~~~l~C~~-~g~p~~~~~W~k~~~ 140 (151)
....+.|.. .++|.+.+.|+|+..
T Consensus 316 ~s~r~~c~~sss~p~~~i~w~~~~~ 340 (741)
T KOG3515|consen 316 RSARSSCVSSSSKPPAHIAWYKDTK 340 (741)
T ss_pred cccccceeccCCCCccceeeeccCc
Confidence 999999985 458888899999643
No 125
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.07 E-value=3.7e-06 Score=47.20 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=19.2
Q ss_pred CccccccCCeEEEEEEEcCCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVP 21 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~ 21 (151)
|.+++.+|+|.|+|.|.|..|
T Consensus 49 I~~~~~~DsG~Y~C~a~n~~g 69 (79)
T cd04973 49 IKDAVPRDSGLYACVTSSPSG 69 (79)
T ss_pred ECCCChhhCEEEEEEEeCCCC
Confidence 578899999999999999887
No 126
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.07 E-value=4.4e-06 Score=47.71 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=25.6
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 33 (151)
|.+++.+|+|.|+|.|.|..+ .......|.|+
T Consensus 54 I~~~~~~DsG~Y~C~a~n~~~-~~~~~t~~~V~ 85 (86)
T cd05862 54 IENVTLSDLGRYTCTASSGQM-IAKNSTIVIVH 85 (86)
T ss_pred EecCCcccCEEEEEEEeecce-EecccEEEEEe
Confidence 568899999999999999887 55666666653
No 127
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.06 E-value=4.5e-06 Score=45.76 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=22.5
Q ss_pred EEEEeeecccCCCeeEEEcCCceecc
Q psy16421 119 LVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 119 ~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
+.|.|.+.|.|.|.++|+|||..+..
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~ 26 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVL 26 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCC
Confidence 36899999999999999999877653
No 128
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.05 E-value=7e-06 Score=46.64 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=24.0
Q ss_pred CccccccCCeEEEEEEEcCCC-CCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVP-PSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v 32 (151)
|.+++.+|+|.|.|.|.|..+ ...+..+.|+|
T Consensus 50 I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V 82 (84)
T cd05861 50 FPHATVEDSGTYECAAHESTQDQKAFKKVNITV 82 (84)
T ss_pred ECCCCcCCCEEEEEEEEECccCcceeEEEEEEE
Confidence 568999999999999998764 23455555555
No 129
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.05 E-value=3.3e-06 Score=47.44 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=22.8
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIML 30 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l 30 (151)
|.+++.+|+|.|+|.+.|..| .....+.|
T Consensus 52 i~~v~~~D~G~Y~C~a~N~~G-~~~~~~~v 80 (82)
T cd05856 52 LKNLKPEDSGKYTCHVSNRAG-EINATYKV 80 (82)
T ss_pred EccCChhhCEEEEEEEEcCCc-cEEEEEEE
Confidence 568899999999999999988 44444443
No 130
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.05 E-value=7.3e-06 Score=44.78 Aligned_cols=28 Identities=43% Similarity=0.992 Sum_probs=24.0
Q ss_pred CCeEEEEeeecCCCCCeEEEEeCCeeeEe
Q psy16421 65 GSNVSMRCAASGSPPPSIMWRREGGEMIT 93 (151)
Q Consensus 65 g~~~~l~C~~~g~~~~~~~W~~~~~~~~~ 93 (151)
|+++.|.|.+.|.|.|.+.|++ +++.+.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k-~g~~l~ 28 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMK-GGEELT 28 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEE-CCEECC
Confidence 6789999999999999999999 555543
No 131
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.05 E-value=8.7e-06 Score=45.20 Aligned_cols=32 Identities=34% Similarity=0.480 Sum_probs=25.9
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 33 (151)
|.+++.+|.|.|+|.+.|..| .....+.|.|.
T Consensus 43 I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~V~ 74 (76)
T cd05736 43 ISNVRYEDTGAYTCIAKNEAG-VDEDISSLFVE 74 (76)
T ss_pred ECcCCcccCEEEEEEEEcCCC-CcceEEEEEEE
Confidence 568899999999999999998 45566666553
No 132
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.04 E-value=1.3e-05 Score=46.07 Aligned_cols=67 Identities=28% Similarity=0.513 Sum_probs=42.2
Q ss_pred CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCC---CCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN---TVPPIVKIPSQLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g 127 (151)
+...+.+|+.+.|.|.+.|.|.|.+.|++ ++..+...... ...... ......+...+...+.|.+..
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~P~p~v~W~~-~g~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~g~Y~C~A~N 77 (90)
T cd04972 8 NATVVYEGGTATIRCTAEGSPLPKVEWII-AGLIVIQTRTDTLETTVDIY--NLQLSNITSETQTTVTCTAEN 77 (90)
T ss_pred cCEEEcCCCcEEEEEEEEEcCCCeEEEEE-CCEEccCCccEEEEecCCEE--EEEEecCCcccCEEEEEEEEC
Confidence 45568889999999999999999999999 55554321110 000000 011112445567889998763
No 133
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.03 E-value=0.00011 Score=42.94 Aligned_cols=69 Identities=16% Similarity=0.382 Sum_probs=43.7
Q ss_pred CceEeecCCeEEEEeeecCCCCCeEEEEeCC-eeeEecccCCCCCCeeeeC-------CceeEeecCCcEEEEeeecc
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREG-GEMITNSFNNTVPPIVKIP-------SQLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~-~~~~~~~~~~~~~p~~~~~-------~~~~~~~~g~~~~l~C~~~g 127 (151)
....+.+|+.+.|.|.+.|.|.|.+.|++.+ +..+.... ......+... .....+...+.....|.+..
T Consensus 9 ~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~-~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 85 (98)
T cd05870 9 KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGD-KSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAAS 85 (98)
T ss_pred ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCC-cCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEec
Confidence 4678889999999999999999999999843 22222110 0000112111 11123456888999999864
No 134
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.03 E-value=1e-05 Score=44.65 Aligned_cols=29 Identities=28% Similarity=0.636 Sum_probs=24.2
Q ss_pred CCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 116 GQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 116 g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
|+.+.|.|.+.|.|.|.+.|+++++..+.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~ 29 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLIS 29 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEec
Confidence 68899999999999999999975454443
No 135
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.02 E-value=5.9e-06 Score=45.39 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=22.4
Q ss_pred EEEEeeecccCCCeeEEEcCCceecc
Q psy16421 119 LVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 119 ~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
+.|.|.+.|.|+|.+.|+|+|..+..
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~ 26 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISE 26 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCC
Confidence 46899999999999999999776643
No 136
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.02 E-value=5.2e-05 Score=42.93 Aligned_cols=66 Identities=20% Similarity=0.371 Sum_probs=41.1
Q ss_pred eEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCc---eeEeecCCcEEEEeeecc
Q psy16421 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQ---LIGAHEGQQLVLECISEA 127 (151)
Q Consensus 60 ~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~g~~~~l~C~~~g 127 (151)
..+.+|+.+.|.|.+.|.|.|.+.|++ ++..+...... ....+..... ...+...+.....|.+..
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k-~g~~l~~~~~~-~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N 72 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLK-NGKEFKQEHRI-GGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 72 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEE-CCEECCCCCce-eeeEEeCCceEEEEccCCcccCEEEEEEEEe
Confidence 456789999999999999999999999 56665432210 0001110000 012345677888998764
No 137
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.02 E-value=4e-06 Score=45.74 Aligned_cols=26 Identities=12% Similarity=0.449 Sum_probs=22.3
Q ss_pred EEEEeeecccCCCeeEEEcCCceecc
Q psy16421 119 LVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 119 ~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
+.|.|.+.|.|.|.+.|+|+|..+..
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~ 26 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTE 26 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCC
Confidence 47999999999999999999766543
No 138
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.02 E-value=1.1e-05 Score=45.89 Aligned_cols=65 Identities=25% Similarity=0.458 Sum_probs=42.1
Q ss_pred CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCC-CCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV-PPIVKIPSQLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~g~~~~l~C~~~g 127 (151)
....+..|+.+.|.|.+.|.|.|.+.|++ +++.+....+... .-.+.+. .+...+.....|.+..
T Consensus 7 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~k-~g~~~~~~~~~~~~~~~L~i~----~~~~~D~G~Y~C~a~N 72 (85)
T cd05728 7 SDTEADIGSSLRWECKASGNPRPAYRWLK-NGQPLASENRIEVEAGDLRIT----KLSLSDSGMYQCVAEN 72 (85)
T ss_pred CccEEcCCCcEEEEEEeeEeCCCEEEEEE-CCEECCCCCeEEEeCCEEEEe----eCCHHHCEEEEEEEEC
Confidence 46778899999999999999999999999 5655432211000 0111111 2334566778888764
No 139
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.01 E-value=1.9e-05 Score=45.61 Aligned_cols=63 Identities=13% Similarity=0.274 Sum_probs=42.7
Q ss_pred CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC---CCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT---VPPIVKIPSQLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~~~g~~~~l~C~~~g 127 (151)
+.+.+.+|+++.|.|.+.|. .|.+.|++ ++..+.... .. ....+.+. .+...+.....|.+..
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~k-ng~~l~~~~-~~~~~~~~~L~I~----~v~~~D~G~Y~C~a~N 76 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVN-NGSLLVPPR-LQLSNDNRTLTFN----NVTRSDTGHYQCEASN 76 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCEEEEEE-CCEECCCCC-EEEeCCCCEEEEC----cCChhhCEEEEEEEEc
Confidence 56788999999999999999 99999999 555543211 00 00112221 2456788999999864
No 140
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.00 E-value=9.7e-06 Score=44.77 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=22.8
Q ss_pred cEEEEeeecccCCCeeEEEcCCceec
Q psy16421 118 QLVLECISEAYPKSVNYWTREKGDMI 143 (151)
Q Consensus 118 ~~~l~C~~~g~p~~~~~W~k~~~~~~ 143 (151)
.+.|.|.+.|.|.|.++|+|+|..+.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~ 26 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLK 26 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcC
Confidence 36899999999999999999977663
No 141
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=97.99 E-value=6e-06 Score=45.32 Aligned_cols=26 Identities=42% Similarity=0.787 Sum_probs=22.2
Q ss_pred EEEEeeecccCCCeeEEEcCCceecc
Q psy16421 119 LVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 119 ~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
+.|.|.+.|.|.|.+.|+|+++.+..
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~ 26 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSP 26 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCC
Confidence 46999999999999999999775543
No 142
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=97.99 E-value=5.6e-06 Score=46.01 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.8
Q ss_pred CccccccCCeEEEEEEEcCCCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVPP 22 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~ 22 (151)
|.+++.+|+|.|+|.+.|..|.
T Consensus 48 I~~~~~~DsG~Y~C~a~N~~g~ 69 (76)
T cd05895 48 ISKASLADNGEYKCMVSSKLGN 69 (76)
T ss_pred ECcCCcccCEEEEEEEEeCCCc
Confidence 5788999999999999999883
No 143
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=97.98 E-value=2.2e-05 Score=44.88 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=30.6
Q ss_pred CceeEeecCCcEEEEeeecccCCCeeEEEcCCceeccC
Q psy16421 108 SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN 145 (151)
Q Consensus 108 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~~ 145 (151)
|....+..|+++.|.|.+.+ |.+.+.|++||..+..+
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~ 39 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPE 39 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCC
Confidence 45677899999999999865 67899999998777554
No 144
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=97.98 E-value=8.1e-06 Score=44.98 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=21.8
Q ss_pred EEEeeecccCCCeeEEEcCCceecc
Q psy16421 120 VLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 120 ~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
.|.|.+.|.|+|.+.|+|+|..+..
T Consensus 2 ~l~c~v~g~P~P~v~W~kdg~~l~~ 26 (72)
T cd07702 2 RLTPKVKAFPAPEVIWLKDGLPAAE 26 (72)
T ss_pred eEEeeEEEcCCCeEEEEECCEECCC
Confidence 6899999999999999999876543
No 145
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=97.95 E-value=1.7e-05 Score=45.64 Aligned_cols=23 Identities=13% Similarity=0.374 Sum_probs=21.6
Q ss_pred CCcEEEEeeecccCCCeeEEEcC
Q psy16421 116 GQQLVLECISEAYPKSVNYWTRE 138 (151)
Q Consensus 116 g~~~~l~C~~~g~p~~~~~W~k~ 138 (151)
|+++.|.|.+.|.|.|.|+|+|+
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~ 23 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKH 23 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEe
Confidence 67899999999999999999995
No 146
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=97.95 E-value=9.4e-06 Score=45.07 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=23.0
Q ss_pred EEEEeeecccCCCeeEEEcCCceeccC
Q psy16421 119 LVLECISEAYPKSVNYWTREKGDMIAN 145 (151)
Q Consensus 119 ~~l~C~~~g~p~~~~~W~k~~~~~~~~ 145 (151)
+.|.|.+.|.|.|.+.|+|++..+...
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~ 27 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPK 27 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCC
Confidence 368999999999999999998776543
No 147
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.94 E-value=1e-05 Score=44.87 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=20.9
Q ss_pred EEEEeeecccCCCeeEEEcCCcee
Q psy16421 119 LVLECISEAYPKSVNYWTREKGDM 142 (151)
Q Consensus 119 ~~l~C~~~g~p~~~~~W~k~~~~~ 142 (151)
+.|.|.+.|.|.|.++|+|+|...
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~ 24 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTD 24 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCcc
Confidence 468999999999999999987643
No 148
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=97.93 E-value=4.2e-05 Score=44.21 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=30.7
Q ss_pred eeeCCceeEeecCCcEEEEeeecccCCCeeEEEc-CCceec
Q psy16421 104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR-EKGDMI 143 (151)
Q Consensus 104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k-~~~~~~ 143 (151)
+.+.+....+..|+++.|.|.+.|.|+ .++|++ ++..+.
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~ 42 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLV 42 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEec
Confidence 345566788999999999999999974 999998 444443
No 149
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=97.93 E-value=3e-05 Score=45.23 Aligned_cols=75 Identities=21% Similarity=0.322 Sum_probs=44.1
Q ss_pred CeeEeCCCCCceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCC----ce---eEeecCCcEEE
Q psy16421 49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPS----QL---IGAHEGQQLVL 121 (151)
Q Consensus 49 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~----~~---~~~~~g~~~~l 121 (151)
|.+...+ ....+..|+.+.|.|.+.|.|.|.+.|++ +++.+.... ......+.... .. ..+...+....
T Consensus 3 p~i~~~~--~~~~~~~g~~v~l~C~~~G~P~P~v~W~~-~~~~~~~~~-~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y 78 (97)
T cd05869 3 PKITYVE--NQTAMELEEQITLTCEASGDPIPSITWRT-STRNISSEE-KTLDGHIVVRSHARVSSLTLKYIQYTDAGEY 78 (97)
T ss_pred ceEEEcc--CceEEEcCCCEEEEEEeeEeCCCEEEEEE-CCccccCCc-cccCccEEEEcCccEEEEEEecCccCcCEEE
Confidence 5555444 33445558999999999999999999999 555443211 00011111110 01 12345778889
Q ss_pred Eeeecc
Q psy16421 122 ECISEA 127 (151)
Q Consensus 122 ~C~~~g 127 (151)
.|.+..
T Consensus 79 ~C~A~N 84 (97)
T cd05869 79 LCTASN 84 (97)
T ss_pred EEEEec
Confidence 999853
No 150
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=97.90 E-value=9.7e-06 Score=44.78 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=19.8
Q ss_pred CccccccCCeEEEEEEEcCCCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVPP 22 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~ 22 (151)
|.+++.+|+|.|+|.|.|..|.
T Consensus 47 I~~~~~~D~G~Y~C~a~N~~G~ 68 (75)
T cd05750 47 INKAKLADSGEYTCVVENILGN 68 (75)
T ss_pred EccCCcccCeEEEEEEEEcCCc
Confidence 5678999999999999999984
No 151
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=97.90 E-value=1.5e-05 Score=45.84 Aligned_cols=27 Identities=19% Similarity=0.654 Sum_probs=24.2
Q ss_pred CCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421 116 GQQLVLECISEAYPKSVNYWTREKGDM 142 (151)
Q Consensus 116 g~~~~l~C~~~g~p~~~~~W~k~~~~~ 142 (151)
|+.+.|.|.+.|.|.|.+.|+|+|..+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~ 27 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQN 27 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcc
Confidence 688999999999999999999987643
No 152
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=97.88 E-value=1.3e-05 Score=45.99 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=25.5
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+++++|+|.|.|.+.+..+......++|.|
T Consensus 55 I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V 86 (89)
T cd04979 55 IRSVSPADAGVYTCQSVEHGFKQTLATYSLNV 86 (89)
T ss_pred EccCCHHHCEEEEEEEecCccceeEeEEEEEE
Confidence 57899999999999999876655666666665
No 153
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=97.88 E-value=0.0002 Score=41.47 Aligned_cols=68 Identities=18% Similarity=0.358 Sum_probs=42.1
Q ss_pred CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCC-------ceeEeecCCcEEEEeeecc
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPS-------QLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~-------~~~~~~~g~~~~l~C~~~g 127 (151)
....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..... ...-.+.... ....+...+.....|.+..
T Consensus 9 ~~~~~~~g~~v~l~C~~~g~p~p~v~W~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 83 (96)
T cd05732 9 ENQTAVELEQITLTCEAEGDPIPEITWRR-ATRNFSEGDK-SLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASN 83 (96)
T ss_pred CceeEecCCcEEEEEEEeEcCCCcEEEEE-CCcccCCCCc-cccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEe
Confidence 35678899999999999999999999999 4444332110 0000111110 0112345778889999764
No 154
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=97.88 E-value=2.8e-05 Score=44.66 Aligned_cols=23 Identities=13% Similarity=0.327 Sum_probs=21.4
Q ss_pred CCcEEEEeeecccCCCeeEEEcC
Q psy16421 116 GQQLVLECISEAYPKSVNYWTRE 138 (151)
Q Consensus 116 g~~~~l~C~~~g~p~~~~~W~k~ 138 (151)
|+++.|.|.+.|.|.|.++|+|+
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~ 23 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKH 23 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEe
Confidence 68899999999999999999984
No 155
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.88 E-value=2.1e-05 Score=46.13 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=24.5
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+++.+|+|.|+|.+.+......+..+.|.|
T Consensus 67 i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 67 LSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred EcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 57899999999999999943325666666655
No 156
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=97.87 E-value=9.5e-05 Score=43.02 Aligned_cols=73 Identities=12% Similarity=0.215 Sum_probs=46.5
Q ss_pred CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccC-CCCCCeeee--------CCceeEeecCCcEEEEeeeccc
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN-NTVPPIVKI--------PSQLIGAHEGQQLVLECISEAY 128 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~-~~~~p~~~~--------~~~~~~~~~g~~~~l~C~~~g~ 128 (151)
++..+.+|+++.|.|.+.+.|.+.+.|++.+++.+..... .....++.. ...-..+...+.....|.+...
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~ 84 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM 84 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence 5678899999999999999999999999955433221110 001111111 0111235678888999998775
Q ss_pred CC
Q psy16421 129 PK 130 (151)
Q Consensus 129 p~ 130 (151)
+.
T Consensus 85 ~~ 86 (95)
T cd05882 85 PV 86 (95)
T ss_pred cc
Confidence 53
No 157
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=97.86 E-value=1.7e-05 Score=44.47 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=21.9
Q ss_pred EEEeeecccCCCeeEEEcCCceeccC
Q psy16421 120 VLECISEAYPKSVNYWTREKGDMIAN 145 (151)
Q Consensus 120 ~l~C~~~g~p~~~~~W~k~~~~~~~~ 145 (151)
.+.|.+.|.|.|.++|+|||..+..+
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~ 27 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNES 27 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCC
Confidence 36799999999999999998777543
No 158
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=97.86 E-value=9.1e-05 Score=41.30 Aligned_cols=25 Identities=40% Similarity=1.022 Sum_probs=21.2
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeeEe
Q psy16421 68 VSMRCAASGSPPPSIMWRREGGEMIT 93 (151)
Q Consensus 68 ~~l~C~~~g~~~~~~~W~~~~~~~~~ 93 (151)
+.|.|.+.|+|.|.+.|++ ++.++.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k-~g~~l~ 25 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTR-NGTHFD 25 (77)
T ss_pred CEEEeeCcccCCCeEEEEE-CCeECC
Confidence 4789999999999999999 566653
No 159
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=97.85 E-value=2.4e-05 Score=45.26 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=21.9
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIM 29 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~ 29 (151)
|.+++.+|+|.|+|.+.|..+ .....++
T Consensus 56 I~~v~~~DsG~YtC~~~n~~~-~~~~~~t 83 (92)
T cd05757 56 IQNVTEEDAGNYTCKLTFTHN-GKQYNVT 83 (92)
T ss_pred EeeCChhhCEEEEEEEEecCC-CEEEEEE
Confidence 578999999999999999877 3333333
No 160
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=97.85 E-value=3.3e-05 Score=44.26 Aligned_cols=35 Identities=20% Similarity=0.453 Sum_probs=29.3
Q ss_pred CceeEeecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421 108 SQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI 143 (151)
Q Consensus 108 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~ 143 (151)
+..+.+.+|+++.|.|.+.+ |.+.+.|+|++..+.
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~ 37 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQ 37 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccc
Confidence 44567889999999999987 888999999976554
No 161
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.83 E-value=6.3e-05 Score=41.71 Aligned_cols=40 Identities=18% Similarity=0.433 Sum_probs=31.6
Q ss_pred CeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421 102 PIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI 143 (151)
Q Consensus 102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~ 143 (151)
|.|...+ ..+.+|+++.|.|.+.+.|.+.+.|++++..+.
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~ 41 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPIN 41 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeee
Confidence 4455444 458899999999999999999999999876554
No 162
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=97.83 E-value=2.1e-05 Score=44.41 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=22.7
Q ss_pred EEEeeecccCCCeeEEEcCCceeccCC
Q psy16421 120 VLECISEAYPKSVNYWTREKGDMIANG 146 (151)
Q Consensus 120 ~l~C~~~g~p~~~~~W~k~~~~~~~~~ 146 (151)
.+.|.+.|.|.|.++|+|||..+..+.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~ 28 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESD 28 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCC
Confidence 368999999999999999987776543
No 163
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=97.83 E-value=0.00045 Score=39.67 Aligned_cols=58 Identities=22% Similarity=0.444 Sum_probs=35.7
Q ss_pred CCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeE---ee-cCCcEEEEeeecc
Q psy16421 65 GSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIG---AH-EGQQLVLECISEA 127 (151)
Q Consensus 65 g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~-~g~~~~l~C~~~g 127 (151)
+..+.|.|.+.|.|.|.+.|++ +++.+..... ..+........ +. ..+.....|.+..
T Consensus 19 ~~~~~l~C~~~g~p~p~i~W~k-~~~~l~~~~~----~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N 80 (91)
T cd04967 19 EGKVSLNCRARGSPPPTYRWLM-NGTEIDDEPD----SRYSLVGGNLVISNPSKAKDAGRYQCLASN 80 (91)
T ss_pred CCEEEEEEeeeEcCCCEEEEEE-CCEECCCCCC----CCEEEECCEEEEecCCccCCCEEEEEEEEc
Confidence 4679999999999999999999 5665532111 11111111111 12 2567789999863
No 164
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=97.82 E-value=3.7e-05 Score=45.29 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=42.8
Q ss_pred ceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCC-CC-CC-----eeeeCCceeEeecCCcEEEEeeecc
Q psy16421 59 DIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN-TV-PP-----IVKIPSQLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 59 ~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~-~~-~p-----~~~~~~~~~~~~~g~~~~l~C~~~g 127 (151)
...+..|+.+.|.|.+.|.|.|.+.|+| +++++...... .. .- ..........+...+....+|.+..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~k-dg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N 86 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLK-DNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQN 86 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEE-CCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEc
Confidence 3456778999999999999999999999 67776543210 00 00 0000111123456677778888764
No 165
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=97.82 E-value=5.1e-05 Score=42.74 Aligned_cols=33 Identities=15% Similarity=0.398 Sum_probs=28.7
Q ss_pred eEeecCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421 111 IGAHEGQQLVLECISEAYPKSVNYWTREKGDMI 143 (151)
Q Consensus 111 ~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~ 143 (151)
+.+..|+++.|.|.+.+.|.+.+.|+|++..+.
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~ 36 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFK 36 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECc
Confidence 456789999999999999999999999876654
No 166
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=97.81 E-value=0.00012 Score=40.76 Aligned_cols=24 Identities=33% Similarity=0.973 Sum_probs=20.7
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeeE
Q psy16421 68 VSMRCAASGSPPPSIMWRREGGEMI 92 (151)
Q Consensus 68 ~~l~C~~~g~~~~~~~W~~~~~~~~ 92 (151)
+.|.|.+.|.|.|.+.|++ ++..+
T Consensus 1 ~~l~C~~~G~P~P~v~W~k-~g~~~ 24 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTR-NGKFF 24 (77)
T ss_pred CEEEEeccccCCCEEEEEE-CCEEc
Confidence 4689999999999999999 56654
No 167
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=97.80 E-value=2.1e-05 Score=43.33 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=18.7
Q ss_pred CccccccCCeEEEEEEEcCCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVP 21 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~ 21 (151)
|.+++.+|+|.|+|.|.|...
T Consensus 40 I~~v~~~D~G~YtC~a~~~~~ 60 (72)
T cd07702 40 IKDVTEEDAGIYTILLGIKQY 60 (72)
T ss_pred ECcCCHHHCEEEEEEEEcccc
Confidence 578999999999999999854
No 168
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=97.79 E-value=5.5e-05 Score=43.99 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=27.8
Q ss_pred CceeEeecCCcEEEEeeecccCCCeeEEEcCC
Q psy16421 108 SQLIGAHEGQQLVLECISEAYPKSVNYWTREK 139 (151)
Q Consensus 108 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~ 139 (151)
...+.+.+|+++.|.|.+.+.|.+.+.|++.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~ 35 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPA 35 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCC
Confidence 34577899999999999999999999998743
No 169
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=97.79 E-value=0.00012 Score=40.77 Aligned_cols=25 Identities=36% Similarity=1.039 Sum_probs=21.2
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeeEe
Q psy16421 68 VSMRCAASGSPPPSIMWRREGGEMIT 93 (151)
Q Consensus 68 ~~l~C~~~g~~~~~~~W~~~~~~~~~ 93 (151)
+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus 1 i~l~C~~~G~P~P~v~W~k-~g~~l~ 25 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTR-NGTHFD 25 (77)
T ss_pred CEEEeeCcccCCCeEEEEE-CCeECC
Confidence 4789999999999999999 666654
No 170
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.79 E-value=2.6e-05 Score=43.69 Aligned_cols=24 Identities=17% Similarity=0.437 Sum_probs=22.1
Q ss_pred CCcEEEEeeecccCCCeeEEEcCC
Q psy16421 116 GQQLVLECISEAYPKSVNYWTREK 139 (151)
Q Consensus 116 g~~~~l~C~~~g~p~~~~~W~k~~ 139 (151)
|+++.|.|.+.|.|.|.++|+|++
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~ 24 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQV 24 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecC
Confidence 788999999999999999999973
No 171
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=97.78 E-value=2.7e-05 Score=42.44 Aligned_cols=25 Identities=36% Similarity=0.768 Sum_probs=21.7
Q ss_pred EEEEeeecccCCCeeEEEcCCceec
Q psy16421 119 LVLECISEAYPKSVNYWTREKGDMI 143 (151)
Q Consensus 119 ~~l~C~~~g~p~~~~~W~k~~~~~~ 143 (151)
+.|.|.+.|.|.|.+.|+|++..+.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~ 25 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELP 25 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECC
Confidence 4689999999999999999876554
No 172
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.78 E-value=0.00011 Score=42.85 Aligned_cols=35 Identities=20% Similarity=0.459 Sum_probs=29.0
Q ss_pred CceEeecCCeEEEEeeecCCCCC-eEEEEeCCeeeEe
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPP-SIMWRREGGEMIT 93 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~-~~~W~~~~~~~~~ 93 (151)
....+.+|+.+.|.|.+.|.|.| .+.|++ +++.+.
T Consensus 9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~-~~~~i~ 44 (98)
T cd05758 9 ATQYAILGDKGRVECFIFSTPPPDRIVWTW-KENELE 44 (98)
T ss_pred CcEEEeCCCcEEEEEEEcccCCCCEeEEEE-CCEEcc
Confidence 34567889999999999999998 699999 566554
No 173
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=97.77 E-value=2.7e-05 Score=42.36 Aligned_cols=24 Identities=21% Similarity=0.630 Sum_probs=21.0
Q ss_pred EEEEeeecccCCCeeEEEcCCcee
Q psy16421 119 LVLECISEAYPKSVNYWTREKGDM 142 (151)
Q Consensus 119 ~~l~C~~~g~p~~~~~W~k~~~~~ 142 (151)
+.|.|.+.|.|.|.+.|+|+++.+
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~ 24 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGEL 24 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccC
Confidence 479999999999999999986654
No 174
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=97.77 E-value=3.2e-05 Score=42.62 Aligned_cols=26 Identities=27% Similarity=0.603 Sum_probs=22.2
Q ss_pred EEEEeeecc-cCCCeeEEEcCCceecc
Q psy16421 119 LVLECISEA-YPKSVNYWTREKGDMIA 144 (151)
Q Consensus 119 ~~l~C~~~g-~p~~~~~W~k~~~~~~~ 144 (151)
+.|.|.+.| .|.|.+.|+|+|..+..
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~ 27 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNR 27 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccc
Confidence 369999999 99999999999876654
No 175
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=97.76 E-value=8.1e-05 Score=42.21 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=30.0
Q ss_pred CCceeEeecCCcEEEEeeecc-cCCCeeEEEcCCcee
Q psy16421 107 PSQLIGAHEGQQLVLECISEA-YPKSVNYWTREKGDM 142 (151)
Q Consensus 107 ~~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~k~~~~~ 142 (151)
.+....+.+|+++.|.|.+.+ .|.+.+.|++++..+
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~ 43 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGL 43 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcC
Confidence 466778899999999999975 788899999987543
No 176
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=97.76 E-value=7.8e-05 Score=43.06 Aligned_cols=65 Identities=17% Similarity=0.330 Sum_probs=41.8
Q ss_pred CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCC----CCC--eeeeCCceeEeecCCcEEEEeeecc
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT----VPP--IVKIPSQLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~----~~p--~~~~~~~~~~~~~g~~~~l~C~~~g 127 (151)
..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....+.. ... .+.+ ..+...+.....|.+..
T Consensus 9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~-~~~~~~~~~~~~~~~~~~~~~L~I----~~~~~~D~G~Y~C~a~N 79 (92)
T cd05891 9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKN-DQDIELSEHYSVKLEQGKYASLTI----KGVTSEDSGKYSINVKN 79 (92)
T ss_pred CcEEEcCCCEEEEEEEEEEeCCCeEEEEEC-CEECCCCCCEEEEEcCCCEEEEEE----CCCChhhCEEEEEEEEe
Confidence 467788999999999999999999999994 44433221100 000 1111 12345777888898763
No 177
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.75 E-value=5.9e-05 Score=43.80 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=31.6
Q ss_pred CceeEeecCCcEEEEee-ecccCCCeeEEEcCCceeccC
Q psy16421 108 SQLIGAHEGQQLVLECI-SEAYPKSVNYWTREKGDMIAN 145 (151)
Q Consensus 108 ~~~~~~~~g~~~~l~C~-~~g~p~~~~~W~k~~~~~~~~ 145 (151)
...+.+.+|+.+.|.|. ..|.|.|.+.|++++...+..
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~ 48 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ 48 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc
Confidence 45678899999999997 699999999999886555443
No 178
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=97.70 E-value=5.4e-05 Score=42.51 Aligned_cols=27 Identities=22% Similarity=0.608 Sum_probs=22.6
Q ss_pred cEEEEeeec-ccCCCeeEEEcCCceecc
Q psy16421 118 QLVLECISE-AYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 118 ~~~l~C~~~-g~p~~~~~W~k~~~~~~~ 144 (151)
.++|+|.+. |+|++.++|+|++.++..
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~ 28 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKG 28 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCC
Confidence 378999976 589999999999887754
No 179
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.69 E-value=5.3e-05 Score=43.99 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=28.2
Q ss_pred eeEeecCCcEEEEeeecc-----cCCCeeEEEcCCcee
Q psy16421 110 LIGAHEGQQLVLECISEA-----YPKSVNYWTREKGDM 142 (151)
Q Consensus 110 ~~~~~~g~~~~l~C~~~g-----~p~~~~~W~k~~~~~ 142 (151)
...+.+|+.+.|.|.+.| .|.|.++|+|++..+
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~ 45 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKT 45 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCC
Confidence 455779999999999999 688999999997653
No 180
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.68 E-value=6.2e-05 Score=43.86 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=24.2
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+++.+|+|.|+|.+.+...........|.|
T Consensus 64 i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 64 LENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 57899999999999987665446666666554
No 181
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=97.66 E-value=3.4e-05 Score=43.79 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.7
Q ss_pred CccccccCCeEEEEEEEcCCCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVPP 22 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~ 22 (151)
|.+++.+|+|.|.|.+.|..|.
T Consensus 56 I~~v~~~DsG~Y~C~a~n~~g~ 77 (85)
T cd05754 56 IRNVQLSDAGTYVCTGSNMLDT 77 (85)
T ss_pred ECCCCHHHCEEEEEEEeccCCe
Confidence 5688999999999999999883
No 182
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=97.66 E-value=0.00013 Score=43.53 Aligned_cols=29 Identities=24% Similarity=0.592 Sum_probs=24.9
Q ss_pred cCCeEEEEeeecCCCCCeEEEEeCCeeeEe
Q psy16421 64 EGSNVSMRCAASGSPPPSIMWRREGGEMIT 93 (151)
Q Consensus 64 ~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~ 93 (151)
.|..+.|.|.+.|.|.+.+.|++ ++..+.
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k-~g~~l~ 50 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAK-NGVPLD 50 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEE-CCEECC
Confidence 46789999999999999999999 666654
No 183
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=97.65 E-value=7.6e-05 Score=42.45 Aligned_cols=27 Identities=19% Similarity=0.371 Sum_probs=22.7
Q ss_pred CcEEEEeeecccCCC--eeEEEcCCceec
Q psy16421 117 QQLVLECISEAYPKS--VNYWTREKGDMI 143 (151)
Q Consensus 117 ~~~~l~C~~~g~p~~--~~~W~k~~~~~~ 143 (151)
+++.|.|.+.|.|.| .++|+|||..+.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~ 29 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPID 29 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEcc
Confidence 478999999999987 489999977653
No 184
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=97.64 E-value=0.00091 Score=38.22 Aligned_cols=72 Identities=17% Similarity=0.303 Sum_probs=48.3
Q ss_pred CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCcee---EeecCCcEEEEeeecccCCC-ee
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLI---GAHEGQQLVLECISEAYPKS-VN 133 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~g~~~~l~C~~~g~p~~-~~ 133 (151)
....+..|+++.|.|.+.+ +.+.+.|++ +++++.... ..+....... .+...+.....|.+...-+. .|
T Consensus 4 ~~~~v~~G~~v~L~C~~~~-~~~~i~W~~-ng~~i~~~~-----~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~~~~~~ 76 (87)
T cd05873 4 RQRTFKLGNNAELKCSPKS-NLARVVWKF-DGKVLTPES-----AKYLLYRDGLLIFNASEADAGRYQCLSVEKSKAKLF 76 (87)
T ss_pred ceEEEECCCCEEEEEECCC-CCCeEEEEE-CCEECCCCC-----ceEEEECCcEEEeCCCHHHCEEEEEEEEecccCcee
Confidence 5678889999999999865 678999999 677765321 1222221111 25578899999998765333 36
Q ss_pred EEE
Q psy16421 134 YWT 136 (151)
Q Consensus 134 ~W~ 136 (151)
+|.
T Consensus 77 ~~~ 79 (87)
T cd05873 77 TQT 79 (87)
T ss_pred EeE
Confidence 654
No 185
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.64 E-value=0.00015 Score=42.53 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=30.7
Q ss_pred eeeeCCceeEeecCCcEEEEeeecc-cCCCe--eEEEcCCceec
Q psy16421 103 IVKIPSQLIGAHEGQQLVLECISEA-YPKSV--NYWTREKGDMI 143 (151)
Q Consensus 103 ~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~--~~W~k~~~~~~ 143 (151)
.+.+.+....+.+|+.++|.|.+.| .|.+. +.|+|++..+.
T Consensus 3 ~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~ 46 (100)
T cd05755 3 SVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLS 46 (100)
T ss_pred eEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcc
Confidence 3444444455789999999999986 77776 79999866554
No 186
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=97.63 E-value=4.3e-05 Score=43.06 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=22.3
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIML 30 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l 30 (151)
|.++..+|+|.|.|.+.|..|. ....+.|
T Consensus 55 i~~~~~~d~g~Y~C~~~n~~g~-~~~~~~l 83 (85)
T cd05729 55 LESVVPSDSGKYTCIVENKYGS-INHTYKV 83 (85)
T ss_pred EeECCcccCEEEEEEEEECCce-EEEEEEE
Confidence 4578899999999999999883 4444444
No 187
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=97.61 E-value=0.0001 Score=41.15 Aligned_cols=58 Identities=26% Similarity=0.451 Sum_probs=35.7
Q ss_pred CCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCC-----CCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421 65 GSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV-----PPIVKIPSQLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 65 g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~-----~p~~~~~~~~~~~~~g~~~~l~C~~~g 127 (151)
|+++.|.|.+.|.|.|.+.|++ ++..+....+... .-.+.+. .+...+.....|.+..
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~-~~~~~~~~~~~~~~~~~~~~~L~I~----~v~~~D~G~Y~C~a~N 63 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRL-NWGHVPDSARVSITSEGGYGTLTIR----DVKESDQGAYTCEAIN 63 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEE-CCeECCCCCCEEEEECCCEEEEEEC----CCChHHCEEEEEEEEe
Confidence 6889999999999999999999 4444332111000 0011111 2345667788998753
No 188
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.61 E-value=5.1e-05 Score=44.11 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=18.8
Q ss_pred CccccccCCeEEEEEEEcCCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVP 21 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~ 21 (151)
|.+|..+|+|.|+|++.+..+
T Consensus 59 I~~v~~~D~G~YtC~~~~~~~ 79 (95)
T cd05897 59 IIDVSLNDSGYYTCKLQFTHE 79 (95)
T ss_pred EEEcChhhCEEEEEEEEEeeC
Confidence 568999999999999999866
No 189
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.60 E-value=5.4e-05 Score=43.51 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=22.7
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIML 30 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l 30 (151)
|.+++.+|+|.|.|.+....+......+.|
T Consensus 61 I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l 90 (92)
T cd05741 61 IQNLTKEDSGTYTLQIISTNGVTENAKFFL 90 (92)
T ss_pred EccCCchhcEEEEEEEEcCCCcEEEEEEEE
Confidence 679999999999999988876444333333
No 190
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=97.58 E-value=6.6e-05 Score=43.31 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=21.9
Q ss_pred CccccccCCeEEEEEEEc-CCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASN-GVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~-~~~~~~~~~~~l~v 32 (151)
|.+++++|+|.|.|.+.+ ..+ .....++|+|
T Consensus 57 I~~~~~~DsG~Y~C~a~~~~~~-~~~~~~~l~v 88 (91)
T cd05871 57 LRSLQRSDAGVYTCTAVEHSFS-QTLAKYTLHV 88 (91)
T ss_pred EeeCChhHCEEEEEEEEccCCe-EEEEEEEEEE
Confidence 578999999999999985 433 3333455554
No 191
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.57 E-value=0.00017 Score=40.87 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=27.8
Q ss_pred ceeEeecCCcEEEEeeecc-cCCCeeEEEcCCceec
Q psy16421 109 QLIGAHEGQQLVLECISEA-YPKSVNYWTREKGDMI 143 (151)
Q Consensus 109 ~~~~~~~g~~~~l~C~~~g-~p~~~~~W~k~~~~~~ 143 (151)
....+.+|+++.|.|.+.+ .+.+.+.|+|+|..+.
T Consensus 7 p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~ 42 (83)
T cd05753 7 PSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKK 42 (83)
T ss_pred CcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcc
Confidence 3446899999999999864 5667899999986553
No 192
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.57 E-value=7.8e-05 Score=43.52 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=25.3
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|++++.+|+|.|.|.+.+..+......+.|.|
T Consensus 65 I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 65 ISNLKMEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred ECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 67899999999999999887755555555554
No 193
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=97.56 E-value=0.00016 Score=41.01 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=22.7
Q ss_pred CcEEEEeeecccCCC--eeEEEcCCceec
Q psy16421 117 QQLVLECISEAYPKS--VNYWTREKGDMI 143 (151)
Q Consensus 117 ~~~~l~C~~~g~p~~--~~~W~k~~~~~~ 143 (151)
+++.|.|.+.|.|.| .+.|+|+|..+.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~ 29 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPID 29 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEee
Confidence 468999999999987 579999987664
No 194
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.56 E-value=0.00013 Score=38.14 Aligned_cols=29 Identities=28% Similarity=0.519 Sum_probs=25.0
Q ss_pred cCCcEEEEeeecccCCCeeEEEcCCceec
Q psy16421 115 EGQQLVLECISEAYPKSVNYWTREKGDMI 143 (151)
Q Consensus 115 ~g~~~~l~C~~~g~p~~~~~W~k~~~~~~ 143 (151)
+|+++.|.|.+.+.|.+.+.|++++..+.
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~ 29 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP 29 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC
Confidence 48899999999999999999999876544
No 195
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.53 E-value=0.00013 Score=42.47 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=22.5
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+++.+|+|.|.|.+.+.........+.|.|
T Consensus 66 I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 66 ISNLRLEDEGNYICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence 67899999999999987643224445555443
No 196
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.52 E-value=0.00027 Score=41.03 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=26.8
Q ss_pred eEeecCCcEEEEeeecccCCCeeEEEcCCce
Q psy16421 111 IGAHEGQQLVLECISEAYPKSVNYWTREKGD 141 (151)
Q Consensus 111 ~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~ 141 (151)
+.+.+|++++|.|.+.+.+.+.+.|+++++.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k 32 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQI 32 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcE
Confidence 4578999999999999999999999977644
No 197
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=97.52 E-value=7.6e-05 Score=41.72 Aligned_cols=22 Identities=36% Similarity=0.875 Sum_probs=19.5
Q ss_pred EEEEeeecccCCCeeEEEcCCc
Q psy16421 119 LVLECISEAYPKSVNYWTREKG 140 (151)
Q Consensus 119 ~~l~C~~~g~p~~~~~W~k~~~ 140 (151)
+.|.|.+.|.|.|.++|+|+++
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~ 22 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKG 22 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCC
Confidence 4799999999999999999644
No 198
>KOG3515|consensus
Probab=97.51 E-value=0.00028 Score=54.68 Aligned_cols=121 Identities=20% Similarity=0.315 Sum_probs=73.5
Q ss_pred CeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEee--ecCCCCCeEEEEe
Q psy16421 9 MGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCA--ASGSPPPSIMWRR 86 (151)
Q Consensus 9 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~--~~g~~~~~~~W~~ 86 (151)
-+.|.|++.|..+......+.+.+ ..+|.-.... .......+..+.+.|. ..+.|.+.++|+.
T Consensus 71 ~~~~~c~a~ns~~~~~~~~~~l~v-------------~~~pa~~~~~--~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~ 135 (741)
T KOG3515|consen 71 VAELNCRAFNSVGMPSRCPMILDV-------------DYPPACLPEL--GEIFQVDKGVVQIICSAKVAGRPNPNLRWGF 135 (741)
T ss_pred hhhhhhhhcccccCceecceeecc-------------ccCccccccc--cchhhhcCCeEEEEEeecCCCCCCcceeeee
Confidence 469999999986654444444433 3444333322 2334456788999995 4668889999998
Q ss_pred CCeeeEecccC-------------------------------------C-------------------CCCCeeeeCCce
Q psy16421 87 EGGEMITNSFN-------------------------------------N-------------------TVPPIVKIPSQL 110 (151)
Q Consensus 87 ~~~~~~~~~~~-------------------------------------~-------------------~~~p~~~~~~~~ 110 (151)
++......... . .....+......
T Consensus 136 n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~ 215 (741)
T KOG3515|consen 136 NNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQ 215 (741)
T ss_pred ccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhc
Confidence 44333322210 0 001111112233
Q ss_pred eEeecCCcEEEEeeec-ccCCCeeEEEcCCceecc
Q psy16421 111 IGAHEGQQLVLECISE-AYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 111 ~~~~~g~~~~l~C~~~-g~p~~~~~W~k~~~~~~~ 144 (151)
....+|+.+.|.|.++ |.|.+.++|+++......
T Consensus 216 qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~ 250 (741)
T KOG3515|consen 216 QSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSE 250 (741)
T ss_pred CcccccceEEEEehhhcCCcchhhhhccccccchh
Confidence 4567899999999876 588899999997654443
No 199
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=97.50 E-value=0.00073 Score=37.95 Aligned_cols=59 Identities=14% Similarity=0.361 Sum_probs=37.0
Q ss_pred EEEEeee-cCCCCCeEEEEeCCeeeEecccC-CCCCCeeeeC--CceeEeecCCcEEEEeeecc
Q psy16421 68 VSMRCAA-SGSPPPSIMWRREGGEMITNSFN-NTVPPIVKIP--SQLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 68 ~~l~C~~-~g~~~~~~~W~~~~~~~~~~~~~-~~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g 127 (151)
+.|.|.. .++|.+.+.||+ |++++..... ......+... .......+.+...+.|++..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k-~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n 64 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYR-DRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASH 64 (80)
T ss_pred EEEEEeCCCccCCCeEEEEE-CCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEC
Confidence 6899995 669999999999 6777653211 0111112211 12223457888999999875
No 200
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=97.47 E-value=0.00032 Score=40.77 Aligned_cols=73 Identities=11% Similarity=0.208 Sum_probs=46.6
Q ss_pred CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccC-CCCCCeeeeC--------CceeEeecCCcEEEEeeeccc
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN-NTVPPIVKIP--------SQLIGAHEGQQLVLECISEAY 128 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~-~~~~p~~~~~--------~~~~~~~~g~~~~l~C~~~g~ 128 (151)
+.+.+.+|+++.|.|.+.+.|.+.+.|++.+++.+-.... .....++... ..-..+...+.....|.+...
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~ 84 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM 84 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence 5688999999999999999999999999754433321110 1112222210 011235678889999998775
Q ss_pred CC
Q psy16421 129 PK 130 (151)
Q Consensus 129 p~ 130 (151)
|.
T Consensus 85 ~~ 86 (95)
T cd07701 85 PV 86 (95)
T ss_pred cC
Confidence 43
No 201
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=97.46 E-value=0.00015 Score=41.05 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.2
Q ss_pred CCcEEEEeeeccc--CCCeeEEEcCCcee
Q psy16421 116 GQQLVLECISEAY--PKSVNYWTREKGDM 142 (151)
Q Consensus 116 g~~~~l~C~~~g~--p~~~~~W~k~~~~~ 142 (151)
|+++.|.|.+.|. |.|.+.|.+++..+
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~ 29 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKR 29 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCccc
Confidence 7899999999999 88899999876543
No 202
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.46 E-value=0.00025 Score=40.52 Aligned_cols=27 Identities=30% Similarity=0.698 Sum_probs=22.4
Q ss_pred CCcEEEEeeec-ccCCCeeEEEcCCcee
Q psy16421 116 GQQLVLECISE-AYPKSVNYWTREKGDM 142 (151)
Q Consensus 116 g~~~~l~C~~~-g~p~~~~~W~k~~~~~ 142 (151)
|+.+.+.|.+. |+|.|.++|+.++..+
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~ 41 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPV 41 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCce
Confidence 78999999865 6999999999987665
No 203
>PHA02633 hypothetical protein; Provisional
Probab=97.45 E-value=0.00016 Score=37.97 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=24.9
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 33 (151)
|-++..+|+|.|.|..+|..- ....++.|+|.
T Consensus 22 ilpa~~sDSGiYiC~~rn~t~-c~~~si~l~V~ 53 (63)
T PHA02633 22 ILNPTQSDSGIYMCITKNETY-SDMMKFDLCIC 53 (63)
T ss_pred EeccccccCcEEEEEEcCCCe-eEEEEEEEEEe
Confidence 346788999999999998765 56666777765
No 204
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.45 E-value=0.00019 Score=40.41 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=21.0
Q ss_pred cEEEEeeecc-cCCCeeEEEcCCcee
Q psy16421 118 QLVLECISEA-YPKSVNYWTREKGDM 142 (151)
Q Consensus 118 ~~~l~C~~~g-~p~~~~~W~k~~~~~ 142 (151)
.+.|.|.+.| +|.+.++|+|+|..+
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l 26 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVL 26 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEc
Confidence 3689999987 788899999997654
No 205
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.45 E-value=0.00016 Score=42.12 Aligned_cols=32 Identities=31% Similarity=0.340 Sum_probs=24.4
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+++.+|+|.|.|.+.+......+..+.|+|
T Consensus 65 I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 65 IWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 67999999999999987665445666666554
No 206
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.43 E-value=0.00025 Score=40.03 Aligned_cols=27 Identities=19% Similarity=0.501 Sum_probs=22.1
Q ss_pred cEEEEeeecc-cCCCeeEEEcCCceecc
Q psy16421 118 QLVLECISEA-YPKSVNYWTREKGDMIA 144 (151)
Q Consensus 118 ~~~l~C~~~g-~p~~~~~W~k~~~~~~~ 144 (151)
.+.|.|.+.| .|.+.|+|+|++.++..
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~ 28 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGNKELTG 28 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECCEECcC
Confidence 3689999876 78889999999876654
No 207
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.36 E-value=0.00099 Score=36.77 Aligned_cols=58 Identities=31% Similarity=0.623 Sum_probs=41.8
Q ss_pred eEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 60 ~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g 127 (151)
..+.+|+.+.|.|.+.+.|.+.+.|++ ++..+.... .. +.+. .+...+...+.|.+..
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~-~~~~~~~~~-~~----~~~~----~~~~~~~g~y~C~~~~ 66 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYK-NGSPINSSQ-NG----LFIP----NVSPEDSGNYTCRASN 66 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEE-TTEEEEEES-SE----EEES----SEEGGGTEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeee-eeeeeeeee-ee----eeee----eeccccCEEEEEEEEe
Confidence 467889999999999998889999999 555655322 11 2221 2456788889999854
No 208
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.29 E-value=0.0028 Score=37.16 Aligned_cols=66 Identities=18% Similarity=0.368 Sum_probs=38.4
Q ss_pred EeecCCeEEEEeeecC-CCCCe--EEEEeCCeeeEecccCCC--CCCe-eeeCCceeEeecCCcEEEEeeecc
Q psy16421 61 MVREGSNVSMRCAASG-SPPPS--IMWRREGGEMITNSFNNT--VPPI-VKIPSQLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 61 ~~~~g~~~~l~C~~~g-~~~~~--~~W~~~~~~~~~~~~~~~--~~p~-~~~~~~~~~~~~g~~~~l~C~~~g 127 (151)
.+.+|+.+.|.|.+.| .|.+. +.||+ +++.+....... ..+. ...........+.+-+.++|.+.-
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~r-G~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l 83 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLR-GNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETEL 83 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEee-CCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEe
Confidence 4578999999999866 67665 69999 666654322111 0110 010111111245667899999864
No 209
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.29 E-value=0.00064 Score=39.50 Aligned_cols=31 Identities=26% Similarity=0.573 Sum_probs=27.4
Q ss_pred CceEeecCCeEEEEee-ecCCCCCeEEEEeCC
Q psy16421 58 SDIMVREGSNVSMRCA-ASGSPPPSIMWRREG 88 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~-~~g~~~~~~~W~~~~ 88 (151)
+...+.+|+.+.|.|. ..|.|.|.+.|++++
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~ 42 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSD 42 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCC
Confidence 5678899999999997 799999999999844
No 210
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=97.29 E-value=0.00046 Score=39.28 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=22.0
Q ss_pred CcEEEEeeeccc--CCCeeEEEcCCceec
Q psy16421 117 QQLVLECISEAY--PKSVNYWTREKGDMI 143 (151)
Q Consensus 117 ~~~~l~C~~~g~--p~~~~~W~k~~~~~~ 143 (151)
+++.|.|.+.+. +++.|.|+|||..+.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~ 29 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLID 29 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECc
Confidence 468999999874 467799999988775
No 211
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=97.28 E-value=0.00068 Score=39.24 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=26.5
Q ss_pred ceeEeecCCcEEEEeeecccCCCeeEEEcCC
Q psy16421 109 QLIGAHEGQQLVLECISEAYPKSVNYWTREK 139 (151)
Q Consensus 109 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~ 139 (151)
....+.+|+++.|.|.+.+.|.+.+.|++.+
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~ 35 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPN 35 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCC
Confidence 4567889999999999999888999998643
No 212
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.27 E-value=0.00039 Score=40.50 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=19.4
Q ss_pred CccccccCCeEEEEEEEcCCCCCCc
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVS 25 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~ 25 (151)
|.+++.+|+|.|+|.+.+.......
T Consensus 64 i~nvt~~D~G~Y~C~~~t~P~g~~~ 88 (96)
T cd05889 64 FNNATEEDVGLYCCSLVTYPQGSWE 88 (96)
T ss_pred EcCCCcccCEEEEEEEEeCCCCCeE
Confidence 5799999999999998776432333
No 213
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=97.27 E-value=0.00034 Score=38.72 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=20.8
Q ss_pred EEEEeeecc-cCCCeeEEEcCCceecc
Q psy16421 119 LVLECISEA-YPKSVNYWTREKGDMIA 144 (151)
Q Consensus 119 ~~l~C~~~g-~p~~~~~W~k~~~~~~~ 144 (151)
+.|.|.+.+ .|.+.+.|+|+|..+..
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~ 27 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGA 27 (76)
T ss_pred CEEEEecccCCCCCceEEEECCccccc
Confidence 469999875 68889999999876643
No 214
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.26 E-value=0.00023 Score=37.10 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=17.6
Q ss_pred CccccccCCeEEEEEEEcCCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVP 21 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~ 21 (151)
|.+++.+|+|.|+|.+.|..|
T Consensus 43 i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 43 IKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred EeeCCcccCEEEEEEEecCCC
Confidence 467889999999999988654
No 215
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.24 E-value=0.00051 Score=38.89 Aligned_cols=25 Identities=16% Similarity=0.449 Sum_probs=21.0
Q ss_pred EEEEeeecc-cCCCeeEEEcCCceec
Q psy16421 119 LVLECISEA-YPKSVNYWTREKGDMI 143 (151)
Q Consensus 119 ~~l~C~~~g-~p~~~~~W~k~~~~~~ 143 (151)
+.|.|.+.| +|.+.++|+|||..+.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~ 27 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIK 27 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECc
Confidence 689999987 7887899999987653
No 216
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.23 E-value=0.001 Score=41.38 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=42.9
Q ss_pred CCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeeccc-CC-CeeEEEcCCce
Q psy16421 65 GSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAY-PK-SVNYWTREKGD 141 (151)
Q Consensus 65 g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~k~~~~ 141 (151)
.+.-...|.+...+.. . . ..-.+. +..+|.+...+.......|+.+.|.|.+.|. |+ +.|.|+|+|..
T Consensus 11 ~D~G~Y~C~~~~~~~~---~-~-~~~~l~----v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 11 HDEGTYICSVSTPPHQ---A-Q-QIIQLS----VSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred HHCEEEEEEEEccCcc---e-e-eEEEEE----EecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 3567788987532211 1 1 111122 4567777666555445589999999999995 54 47999998753
No 217
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.22 E-value=0.00043 Score=36.79 Aligned_cols=27 Identities=19% Similarity=0.543 Sum_probs=22.7
Q ss_pred CCcEEEEeee-cccCCCeeEEEcCCcee
Q psy16421 116 GQQLVLECIS-EAYPKSVNYWTREKGDM 142 (151)
Q Consensus 116 g~~~~l~C~~-~g~p~~~~~W~k~~~~~ 142 (151)
|+.+.|.|.+ .+.+...+.|+|++...
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~ 28 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSL 28 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTT
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccc
Confidence 7899999999 67777889999987544
No 218
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.19 E-value=0.00065 Score=39.09 Aligned_cols=19 Identities=37% Similarity=0.800 Sum_probs=17.0
Q ss_pred CccccccCCeEEEEEEEcC
Q psy16421 1 MTEVSREHMGAYLCIASNG 19 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~ 19 (151)
|.+|+++|+|.|+|...+.
T Consensus 57 i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 57 IPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred ccCCChhHCEEEEEEEECC
Confidence 5678999999999999886
No 219
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.15 E-value=0.00077 Score=38.85 Aligned_cols=31 Identities=16% Similarity=0.529 Sum_probs=25.4
Q ss_pred ecCCcEEEEeeeccc-CC-CeeEEEcCCceecc
Q psy16421 114 HEGQQLVLECISEAY-PK-SVNYWTREKGDMIA 144 (151)
Q Consensus 114 ~~g~~~~l~C~~~g~-p~-~~~~W~k~~~~~~~ 144 (151)
..|+.+.|.|.+.|. |. +.++|+++|..+..
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~ 43 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTS 43 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCC
Confidence 468999999999997 64 56999999876644
No 220
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=97.14 E-value=0.00068 Score=38.41 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=22.6
Q ss_pred CCcEEEEeeecccCCCeeEEEcCCc
Q psy16421 116 GQQLVLECISEAYPKSVNYWTREKG 140 (151)
Q Consensus 116 g~~~~l~C~~~g~p~~~~~W~k~~~ 140 (151)
|+++.|.|.+.|.|.+.+.|.++++
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~ 25 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGK 25 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCc
Confidence 7899999999999999999998764
No 221
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.13 E-value=0.00079 Score=39.68 Aligned_cols=33 Identities=12% Similarity=0.267 Sum_probs=25.2
Q ss_pred eEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421 111 IGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI 143 (151)
Q Consensus 111 ~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~ 143 (151)
..+..+..+.|.|.+.| +|.. .++|+|||..+.
T Consensus 11 ~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~ 45 (102)
T cd05768 11 EELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLS 45 (102)
T ss_pred HHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence 33456788999999999 5554 389999987654
No 222
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.11 E-value=0.00078 Score=37.97 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=20.9
Q ss_pred EEEEeeecc-cCCCeeEEEcCCceec
Q psy16421 119 LVLECISEA-YPKSVNYWTREKGDMI 143 (151)
Q Consensus 119 ~~l~C~~~g-~p~~~~~W~k~~~~~~ 143 (151)
+.|.|.+.| +|.+.++|+++|..+.
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~ 27 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELK 27 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEcc
Confidence 689999976 5888999999977653
No 223
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.11 E-value=0.00085 Score=37.97 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=21.1
Q ss_pred EEEEeeecc-cCCCeeEEEcCCceec
Q psy16421 119 LVLECISEA-YPKSVNYWTREKGDMI 143 (151)
Q Consensus 119 ~~l~C~~~g-~p~~~~~W~k~~~~~~ 143 (151)
+.|+|.+.| +|.+.|+|+|+|..+.
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~ 27 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELE 27 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECC
Confidence 689999987 6988999999986654
No 224
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.09 E-value=0.00069 Score=39.28 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=40.7
Q ss_pred ceEeecCCeEEEEeeecC-----CCCCeEEEEeCCeeeEecccCCCCCCeeeeCC---ceeEeecCCcEEEEeeecc
Q psy16421 59 DIMVREGSNVSMRCAASG-----SPPPSIMWRREGGEMITNSFNNTVPPIVKIPS---QLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 59 ~~~~~~g~~~~l~C~~~g-----~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~~g~~~~l~C~~~g 127 (151)
...+.+|+.+.|.|.+.+ .|.+.+.|+|+ +..+.... ....++.... ....+...+.....|.+..
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~-~~~~~~~~--~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N 81 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKS-DGKTPIPT--EERSRMHQQKDLLWFLPAALEDSGLYTCVVRN 81 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEc-CCCCcccc--cccceeeecCCeEEEccCCcccCeEEEEEEcC
Confidence 456778999999999988 68899999994 44322110 0001111111 1112456778889998865
No 225
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.09 E-value=0.0013 Score=39.38 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=26.7
Q ss_pred eeEeecCCcEEEEeeecc-cCC-CeeEEEcCCceec
Q psy16421 110 LIGAHEGQQLVLECISEA-YPK-SVNYWTREKGDMI 143 (151)
Q Consensus 110 ~~~~~~g~~~~l~C~~~g-~p~-~~~~W~k~~~~~~ 143 (151)
......|+.+.|.|.+.| +|. ..++|+|||..+.
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~ 50 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELS 50 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECc
Confidence 334567888999999998 665 4699999987764
No 226
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=97.06 E-value=0.0022 Score=37.06 Aligned_cols=71 Identities=11% Similarity=0.231 Sum_probs=44.2
Q ss_pred CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCC-CCCCeeeeC--------CceeEeecCCcEEEEeeeccc
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN-TVPPIVKIP--------SQLIGAHEGQQLVLECISEAY 128 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~-~~~p~~~~~--------~~~~~~~~g~~~~l~C~~~g~ 128 (151)
+.+.+.+|+++.|.|.+.+.+.+.+.|++.++..+-..... ....++... ..-..+...+.....|.+...
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 56788899999999999888888999987444332211100 011222210 011135678889999997654
No 227
>smart00409 IG Immunoglobulin.
Probab=97.05 E-value=0.00071 Score=37.43 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=18.7
Q ss_pred CccccccCCeEEEEEEEcCCCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVPP 22 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~ 22 (151)
|.++..+|+|.|.|.+.+..+.
T Consensus 55 i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00409 55 ISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred EEeeccccCeEEEEEEEcCCCe
Confidence 4678899999999999987763
No 228
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=97.05 E-value=0.00071 Score=37.43 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=18.7
Q ss_pred CccccccCCeEEEEEEEcCCCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVPP 22 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~ 22 (151)
|.++..+|+|.|.|.+.+..+.
T Consensus 55 i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00410 55 ISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred EEeeccccCeEEEEEEEcCCCe
Confidence 4678899999999999987763
No 229
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.04 E-value=0.0015 Score=37.73 Aligned_cols=37 Identities=27% Similarity=0.611 Sum_probs=25.9
Q ss_pred CCeeeeCCceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCc
Q psy16421 101 PPIVKIPSQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKG 140 (151)
Q Consensus 101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~ 140 (151)
+|.+.+...... ++.+.|.|.+.| +|.. .++|+|+|.
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~ 40 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGE 40 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCE
Confidence 455544433221 788999999999 4654 699999975
No 230
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=97.04 E-value=0.0022 Score=37.59 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=29.9
Q ss_pred CceeEeecCCcEEEEeeecccCCCe-eEEEcCCce
Q psy16421 108 SQLIGAHEGQQLVLECISEAYPKSV-NYWTREKGD 141 (151)
Q Consensus 108 ~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~k~~~~ 141 (151)
...+.+.+|+++.|.|.+.++|+|. +.|.+++..
T Consensus 10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~ 44 (101)
T cd05860 10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRT 44 (101)
T ss_pred CceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcc
Confidence 4567899999999999999999998 999997553
No 231
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.04 E-value=0.0018 Score=37.60 Aligned_cols=29 Identities=17% Similarity=0.400 Sum_probs=22.9
Q ss_pred cCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421 115 EGQQLVLECISEA-YPKS-VNYWTREKGDMI 143 (151)
Q Consensus 115 ~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~ 143 (151)
.+....|.|.+.| +|.. .++|+|||..+.
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~ 44 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVT 44 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEcc
Confidence 4566899999999 6754 499999987654
No 232
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.02 E-value=0.0018 Score=37.73 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=28.3
Q ss_pred ceeEeecCCcEEEEeee-cccCCCeeEEEcCCcee
Q psy16421 109 QLIGAHEGQQLVLECIS-EAYPKSVNYWTREKGDM 142 (151)
Q Consensus 109 ~~~~~~~g~~~~l~C~~-~g~p~~~~~W~k~~~~~ 142 (151)
....+.+|+.+.|.|.. .|.|.+.+.|+|++...
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~ 45 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPN 45 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCccc
Confidence 34568899999999975 68999999999997643
No 233
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.01 E-value=0.001 Score=39.06 Aligned_cols=36 Identities=14% Similarity=0.335 Sum_probs=27.0
Q ss_pred CceeEeecCCcEEEEeeecc-cCC-CeeEEEcCCceec
Q psy16421 108 SQLIGAHEGQQLVLECISEA-YPK-SVNYWTREKGDMI 143 (151)
Q Consensus 108 ~~~~~~~~g~~~~l~C~~~g-~p~-~~~~W~k~~~~~~ 143 (151)
+.......++.+.|.|.+.| +|. ..++|++||..+.
T Consensus 9 p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~ 46 (100)
T cd07699 9 PSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVS 46 (100)
T ss_pred CCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECc
Confidence 33334557888999999998 663 4599999987663
No 234
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.96 E-value=0.00097 Score=38.85 Aligned_cols=36 Identities=25% Similarity=0.469 Sum_probs=26.9
Q ss_pred CCceeEeecCCcEEEEeeeccc--CCCe-eEEEcCCcee
Q psy16421 107 PSQLIGAHEGQQLVLECISEAY--PKSV-NYWTREKGDM 142 (151)
Q Consensus 107 ~~~~~~~~~g~~~~l~C~~~g~--p~~~-~~W~k~~~~~ 142 (151)
++....+..|+.+.|.|.+.|. |... ++|+||++..
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~ 43 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEP 43 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEe
Confidence 3444456678999999999998 5543 9999986543
No 235
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=96.93 E-value=0.0044 Score=34.94 Aligned_cols=59 Identities=19% Similarity=0.415 Sum_probs=35.3
Q ss_pred EEEEeeecC-CCCCeEEEEeCCeeeEecccCC--CCCCeeeeC--CceeEeecCCcEEEEeeecc
Q psy16421 68 VSMRCAASG-SPPPSIMWRREGGEMITNSFNN--TVPPIVKIP--SQLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 68 ~~l~C~~~g-~~~~~~~W~~~~~~~~~~~~~~--~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g 127 (151)
+.|.|.+.| +|.+.+.|++ +++.+...... .....+... .....-.+.+-..|.|.+..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k-~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~ 65 (82)
T cd05883 2 IELNCTAMASKPAATIRWFK-GNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDH 65 (82)
T ss_pred EEEEEEecCCCCCCEEEEEE-CCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcC
Confidence 678999755 8889999999 66666542211 111222221 11112345777899999865
No 236
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=96.90 E-value=0.0012 Score=38.20 Aligned_cols=34 Identities=6% Similarity=-0.063 Sum_probs=27.0
Q ss_pred eEeecCCcEEEEeeeccc-----CCCeeEEEcCCceecc
Q psy16421 111 IGAHEGQQLVLECISEAY-----PKSVNYWTREKGDMIA 144 (151)
Q Consensus 111 ~~~~~g~~~~l~C~~~g~-----p~~~~~W~k~~~~~~~ 144 (151)
..+.+|.++.|+|...+. |.|.+.|+||+..+..
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~ 43 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEG 43 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCC
Confidence 457889999999997642 5788999999876643
No 237
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.89 E-value=0.0029 Score=36.77 Aligned_cols=28 Identities=18% Similarity=0.532 Sum_probs=22.6
Q ss_pred ecCCcEEEEeeecc-cCCCe-eEEEcCCce
Q psy16421 114 HEGQQLVLECISEA-YPKSV-NYWTREKGD 141 (151)
Q Consensus 114 ~~g~~~~l~C~~~g-~p~~~-~~W~k~~~~ 141 (151)
..++.+.|.|.+.| +|... ++|+|||..
T Consensus 14 ~~~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 14 SSSDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred cCCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 35778999999999 66544 999999875
No 238
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.88 E-value=0.024 Score=41.78 Aligned_cols=76 Identities=13% Similarity=0.201 Sum_probs=50.3
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CC-
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SP- 78 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~- 78 (151)
|+.++..++|.|.=+..+..+ .......+.| ....+|.+...+ -.+.+|+...-.|.+.. .|
T Consensus 202 I~sltaaTeGvYtWr~~~~n~-t~~~~~~VtV-----------~~yr~Psvsv~~----~PvL~Ge~y~A~C~aa~YYPp 265 (486)
T PHA03273 202 IKSVDWRTAGVYVWSLYAKNG-TLVNSTSVTV-----------STYNAPLVDLSV----HPSLKGENYRAVCVVASYFPH 265 (486)
T ss_pred EEecchhhceEEEEEEecCCC-ceeeeeEEEE-----------EEecCCcccccC----CccccCCCceEEEEeeeecCC
Confidence 466788899999877656544 2333333333 224677776644 35678999999999744 44
Q ss_pred -CCeEEEEeCCeeeEe
Q psy16421 79 -PPSIMWRREGGEMIT 93 (151)
Q Consensus 79 -~~~~~W~~~~~~~~~ 93 (151)
+..+.|++ |+.++.
T Consensus 266 ~Sv~~rWf~-dg~~V~ 280 (486)
T PHA03273 266 SSVKLRWYK-NAKEVD 280 (486)
T ss_pred CceEEEEEe-CCeecc
Confidence 45789999 555555
No 239
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=96.88 E-value=0.0095 Score=34.35 Aligned_cols=69 Identities=16% Similarity=0.356 Sum_probs=39.8
Q ss_pred CCeEEEEeeecC-CCCC-eEEEEeCCeee-EecccCCC----CCCeeeeCCceeEeecCCcEEEEeeecc--cCCCe-eE
Q psy16421 65 GSNVSMRCAASG-SPPP-SIMWRREGGEM-ITNSFNNT----VPPIVKIPSQLIGAHEGQQLVLECISEA--YPKSV-NY 134 (151)
Q Consensus 65 g~~~~l~C~~~g-~~~~-~~~W~~~~~~~-~~~~~~~~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g--~p~~~-~~ 134 (151)
++.+.|.|.+.| .|.. .+.|++ +++. ........ ..-.+.. .+...+..++...++|.+.. .+.|. ..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~-~g~~~~~~~~~~~~~~~~d~ty~~-~s~l~v~~~~~~~ytC~V~H~~~~~~~~~~ 91 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLR-DGEDSVDDVESGEILPNGDGTYQL-WVTLEVPPEDKARYSCRVEHSGLKEPLIVP 91 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEE-CCEECcccccccceEECCCCeEEE-EEEEEECCCCCCEEEEEEEeCCCCCCeEEe
Confidence 678999999999 4543 889999 4542 22111000 0001111 22334556788999999864 34554 56
Q ss_pred E
Q psy16421 135 W 135 (151)
Q Consensus 135 W 135 (151)
|
T Consensus 92 w 92 (93)
T cd07698 92 W 92 (93)
T ss_pred C
Confidence 6
No 240
>smart00409 IG Immunoglobulin.
Probab=96.86 E-value=0.0044 Score=34.11 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=28.1
Q ss_pred eeEeecCCcEEEEeeecccCCCeeEEEcC-Cceec
Q psy16421 110 LIGAHEGQQLVLECISEAYPKSVNYWTRE-KGDMI 143 (151)
Q Consensus 110 ~~~~~~g~~~~l~C~~~g~p~~~~~W~k~-~~~~~ 143 (151)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~ 37 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA 37 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC
Confidence 45678999999999999888889999997 54443
No 241
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=96.86 E-value=0.0044 Score=34.11 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=28.1
Q ss_pred eeEeecCCcEEEEeeecccCCCeeEEEcC-Cceec
Q psy16421 110 LIGAHEGQQLVLECISEAYPKSVNYWTRE-KGDMI 143 (151)
Q Consensus 110 ~~~~~~g~~~~l~C~~~g~p~~~~~W~k~-~~~~~ 143 (151)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~ 37 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA 37 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC
Confidence 45678999999999999888889999997 54443
No 242
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.85 E-value=0.0028 Score=37.70 Aligned_cols=32 Identities=22% Similarity=0.475 Sum_probs=27.2
Q ss_pred eCCceeEeecCCcEEEEeeecccCCCeeEEEcC
Q psy16421 106 IPSQLIGAHEGQQLVLECISEAYPKSVNYWTRE 138 (151)
Q Consensus 106 ~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~ 138 (151)
..+....+.+|+++.|.|.+.+ +.+.+.|+|.
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq 34 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQ 34 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEE
Confidence 4566778999999999999988 6778999984
No 243
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.85 E-value=0.0021 Score=37.28 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=23.5
Q ss_pred eecCCcEEEEeeecc-cCC-CeeEEEcCCcee
Q psy16421 113 AHEGQQLVLECISEA-YPK-SVNYWTREKGDM 142 (151)
Q Consensus 113 ~~~g~~~~l~C~~~g-~p~-~~~~W~k~~~~~ 142 (151)
....+.+.|.|.+.| +|. ..++|+|||..+
T Consensus 11 ~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~ 42 (94)
T cd05847 11 TGTSETIQLLCLISGYTPGTIEVEWLVDGQVA 42 (94)
T ss_pred cCCCCCEEEEEEEEeEECCCCEEEEEECCEEC
Confidence 345677999999999 665 459999998765
No 244
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.82 E-value=0.0022 Score=37.32 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=26.1
Q ss_pred CceeEeecCCcEEEEeeecc-cCCCe-eEEEcCCceec
Q psy16421 108 SQLIGAHEGQQLVLECISEA-YPKSV-NYWTREKGDMI 143 (151)
Q Consensus 108 ~~~~~~~~g~~~~l~C~~~g-~p~~~-~~W~k~~~~~~ 143 (151)
++......+..+.|.|.+.| +|... ++|+|||..+.
T Consensus 8 ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~ 45 (96)
T cd07697 8 PSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSI 45 (96)
T ss_pred CCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence 33334445678999999999 66554 99999987643
No 245
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.81 E-value=0.0023 Score=37.13 Aligned_cols=31 Identities=16% Similarity=0.316 Sum_probs=25.1
Q ss_pred ecCCcEEEEeeecc-cCCC-eeEEEcCCceecc
Q psy16421 114 HEGQQLVLECISEA-YPKS-VNYWTREKGDMIA 144 (151)
Q Consensus 114 ~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~~ 144 (151)
..|+.+.|.|.+.| +|.. .++|+|||..+..
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~ 44 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETE 44 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCC
Confidence 46899999999999 6655 4999999876544
No 246
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=96.81 E-value=0.0026 Score=36.17 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=29.3
Q ss_pred ceeEeecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 109 QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 109 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
...++..|+++.|.|...+. .+.+.|++||..+..
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~ 38 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNA 38 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCC
Confidence 34678999999999999885 679999999887654
No 247
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.78 E-value=0.0033 Score=37.20 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=28.1
Q ss_pred eCCceeEeecCCcEEEEeeecccCCCeeEEEcC
Q psy16421 106 IPSQLIGAHEGQQLVLECISEAYPKSVNYWTRE 138 (151)
Q Consensus 106 ~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~ 138 (151)
..+..+.+.+|+++.|.|.+.+.+...+.|+|.
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~ 35 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQ 35 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEE
Confidence 345677899999999999999877788999984
No 248
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.74 E-value=0.0035 Score=36.30 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=23.1
Q ss_pred ecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421 114 HEGQQLVLECISEA-YPKS-VNYWTREKGDMI 143 (151)
Q Consensus 114 ~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~ 143 (151)
..|....|.|.+.| +|.. .++|+|||..+.
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~ 44 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP 44 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC
Confidence 45667799999999 6654 499999987653
No 249
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.73 E-value=0.0023 Score=38.57 Aligned_cols=36 Identities=14% Similarity=0.372 Sum_probs=26.4
Q ss_pred CceeEeecCCcEEEEeeecc-cCCC-eeEEEcCCceec
Q psy16421 108 SQLIGAHEGQQLVLECISEA-YPKS-VNYWTREKGDMI 143 (151)
Q Consensus 108 ~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~k~~~~~~ 143 (151)
+....+..++.+.|.|.+.| +|.. .++|+|||..+.
T Consensus 10 ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~ 47 (115)
T cd05769 10 PSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVT 47 (115)
T ss_pred cChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECC
Confidence 33333446778999999999 6664 599999987654
No 250
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=96.71 E-value=0.029 Score=32.58 Aligned_cols=75 Identities=13% Similarity=0.082 Sum_probs=48.8
Q ss_pred CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccC-CCCCCeeeeCC--------ceeEeecCCcEEEEeeeccc
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN-NTVPPIVKIPS--------QLIGAHEGQQLVLECISEAY 128 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~-~~~~p~~~~~~--------~~~~~~~g~~~~l~C~~~g~ 128 (151)
+++++.+|+++.|.|.+.+.....+.|++.+...+-.... ....++|.... .-..+.+.+.....|.+...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 5678889999999999988777788999866444322211 12333443211 11135678899999998877
Q ss_pred CCCe
Q psy16421 129 PKSV 132 (151)
Q Consensus 129 p~~~ 132 (151)
|+-.
T Consensus 85 p~~~ 88 (95)
T cd05881 85 PPQE 88 (95)
T ss_pred cCeE
Confidence 6543
No 251
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=96.70 E-value=0.0034 Score=36.52 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=40.7
Q ss_pred CceEeecCCeEEEEee-ecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCC-c---eeEeecCCcEEEEeeecc
Q psy16421 58 SDIMVREGSNVSMRCA-ASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPS-Q---LIGAHEGQQLVLECISEA 127 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~-~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~-~---~~~~~~g~~~~l~C~~~g 127 (151)
....+.+|+.+.|.|. ..|.|.+.+.|+++ +.+.... .....+.... . -..+...+.....|.++.
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~-~~~~~~~---~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n 81 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLN-EFPNFIP---EDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSS 81 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEEC-Ccccccc---cCCCeEEeCCCCcEEEeecCHhhCceeEEEEEe
Confidence 4467889999999998 58899999999994 4432110 0111222211 1 112445666788998865
No 252
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.63 E-value=0.0058 Score=36.07 Aligned_cols=35 Identities=9% Similarity=0.280 Sum_probs=28.0
Q ss_pred eeeCCceeEeecCCcEEEEeeecccC-CCeeEEEcC
Q psy16421 104 VKIPSQLIGAHEGQQLVLECISEAYP-KSVNYWTRE 138 (151)
Q Consensus 104 ~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~k~ 138 (151)
+...+....+.+|+++.|.|.+.+.. ...+.|+|.
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq 38 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQ 38 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence 34556777899999999999998765 567999973
No 253
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.62 E-value=0.0053 Score=34.56 Aligned_cols=29 Identities=24% Similarity=0.676 Sum_probs=23.6
Q ss_pred cCCcEEEEeeecc-cCCCe-eEEEcCCceec
Q psy16421 115 EGQQLVLECISEA-YPKSV-NYWTREKGDMI 143 (151)
Q Consensus 115 ~g~~~~l~C~~~g-~p~~~-~~W~k~~~~~~ 143 (151)
.++.+.|.|.+.| +|... |.|++||..+.
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~ 37 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVT 37 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEET
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceee
Confidence 4889999999998 66554 99999987653
No 254
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.60 E-value=0.0069 Score=35.12 Aligned_cols=28 Identities=18% Similarity=0.523 Sum_probs=24.2
Q ss_pred EeecCCeEEEEeeecCCCCCeEEEEeCC
Q psy16421 61 MVREGSNVSMRCAASGSPPPSIMWRREG 88 (151)
Q Consensus 61 ~~~~g~~~~l~C~~~g~~~~~~~W~~~~ 88 (151)
.+.+|+++.|.|.+.+.+.+.+.|++.+
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~ 30 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSN 30 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECC
Confidence 4567999999999998899999999743
No 255
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.55 E-value=0.0048 Score=37.02 Aligned_cols=32 Identities=19% Similarity=0.481 Sum_probs=26.9
Q ss_pred CCceeEeecCCcEEEEeeecc--cCCCeeEEEcC
Q psy16421 107 PSQLIGAHEGQQLVLECISEA--YPKSVNYWTRE 138 (151)
Q Consensus 107 ~~~~~~~~~g~~~~l~C~~~g--~p~~~~~W~k~ 138 (151)
.+..+.+.+|+++.|.|.+.+ .+.+.+.|+|.
T Consensus 4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq 37 (116)
T cd04982 4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQ 37 (116)
T ss_pred cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence 456677889999999999877 67778999984
No 256
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=96.52 E-value=0.0048 Score=35.50 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=23.8
Q ss_pred eeEeecCCcEEEEeeecccCCCeeEEEcC
Q psy16421 110 LIGAHEGQQLVLECISEAYPKSVNYWTRE 138 (151)
Q Consensus 110 ~~~~~~g~~~~l~C~~~g~p~~~~~W~k~ 138 (151)
.+...+|+++.|.|.. +.|.|.+.|+|.
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq 32 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQ 32 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEE
Confidence 3567899999999996 588899999973
No 257
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=96.52 E-value=0.0051 Score=33.97 Aligned_cols=24 Identities=25% Similarity=0.619 Sum_probs=19.3
Q ss_pred EEEEeeecc-cCC-CeeEEEcCCcee
Q psy16421 119 LVLECISEA-YPK-SVNYWTREKGDM 142 (151)
Q Consensus 119 ~~l~C~~~g-~p~-~~~~W~k~~~~~ 142 (151)
+.|.|.+.| +|+ ..++|+|||..+
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~ 27 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEV 27 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEEC
Confidence 689999998 465 469999998753
No 258
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.51 E-value=0.0016 Score=38.23 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.2
Q ss_pred CccccccCCeEEEEEEEcCCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVP 21 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~ 21 (151)
|.+++.+|+|.|.|.+.+..+
T Consensus 71 I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 71 ISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred ECCCCHHHCEEEEEEEecCCC
Confidence 678999999999999977644
No 259
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=96.48 E-value=0.008 Score=34.50 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=29.0
Q ss_pred CeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCce
Q psy16421 102 PIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGD 141 (151)
Q Consensus 102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~ 141 (151)
|.|...+. ..+..|++++|.|... .+...+.|+|+|..
T Consensus 3 P~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~ 40 (91)
T cd05751 3 PSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGST 40 (91)
T ss_pred CEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCC
Confidence 55655554 3578999999999885 56677999998763
No 260
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.44 E-value=0.062 Score=39.38 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=49.7
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CC-
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SP- 78 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~- 78 (151)
|+.++...+|.|+=...+..+ .......++| ....+|.+...+ -.+.+|+...-.|.+.. .|
T Consensus 186 I~slt~aTeGvY~Wr~~~~~~-~~~~~~~VtV-----------~~yr~Psvsv~~----~PvL~Ge~Y~AtC~va~YYPp 249 (466)
T PHA03270 186 IQELTLATQGMYYWARGPADR-PHRYGTWTRV-----------RMFRRPSLSIRP----HAVLEGEPFGATCVAANYYPG 249 (466)
T ss_pred EEEcccccceEEEEEEecCCC-ceeeeeEEEE-----------EEecCCcccccC----CccccCCCceEEEEeeeecCC
Confidence 456788889999988777655 2222222222 234677776644 34678999999999744 44
Q ss_pred -CCeEEEEeCCeeeEe
Q psy16421 79 -PPSIMWRREGGEMIT 93 (151)
Q Consensus 79 -~~~~~W~~~~~~~~~ 93 (151)
+..+.|++ |+.++.
T Consensus 250 ~Sv~lrWf~-ng~~V~ 264 (466)
T PHA03270 250 DRAAFRWFE-GGDEVF 264 (466)
T ss_pred CceEEEEEe-CCcccc
Confidence 45789999 555543
No 261
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.41 E-value=0.07 Score=38.99 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=46.9
Q ss_pred CccccccCCeEEEEEEEcCCCCCCcc-ceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CC
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSK-RIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SP 78 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~ 78 (151)
|+++.-.|+|.|+....+........ .+.+.+. ..||.+...+ -.+.+|+...=.|.+.. .|
T Consensus 211 I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~------------~RPPsVsV~a----~PVL~Ge~YkAtC~vAnYYP 274 (490)
T PHA03271 211 IRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVC------------QRPASVDVLA----PPVLSGENYKASCIVRHFYP 274 (490)
T ss_pred EEEeecccceEEEEEecCCCCCccccceEEEEEE------------ecCCCccccC----CccccCCCceEEEEeeeecC
Confidence 57888899997766555544432222 2233222 3677676643 34667999999999754 44
Q ss_pred --CCeEEEEeCCeeeE
Q psy16421 79 --PPSIMWRREGGEMI 92 (151)
Q Consensus 79 --~~~~~W~~~~~~~~ 92 (151)
+..++|+. ||.+.
T Consensus 275 P~SvrlrWf~-nG~~V 289 (490)
T PHA03271 275 PGSVYVSWRQ-NGNIA 289 (490)
T ss_pred CCceEEEEEe-CCccc
Confidence 45789998 45553
No 262
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=96.41 E-value=0.029 Score=31.70 Aligned_cols=59 Identities=14% Similarity=0.325 Sum_probs=33.7
Q ss_pred EEEEeeecC-CCCCeEEEEeCCeeeEecccCC-CCCC---eeeeCCceeEee---cCCcEEEEeeeccc
Q psy16421 68 VSMRCAASG-SPPPSIMWRREGGEMITNSFNN-TVPP---IVKIPSQLIGAH---EGQQLVLECISEAY 128 (151)
Q Consensus 68 ~~l~C~~~g-~~~~~~~W~~~~~~~~~~~~~~-~~~p---~~~~~~~~~~~~---~g~~~~l~C~~~g~ 128 (151)
+.|.|.+.| .|...+.|++ +++.+...... ..++ .+... +...+. ..+...++|.+...
T Consensus 2 ~~LtC~a~gf~P~~~itW~k-ng~~l~~~~~~~~~~~~~~t~~~~-s~L~~~~~~~d~g~~ytC~v~h~ 68 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFK-NDKEIKDVKYLKEEDANRKTFTVS-STLDFRVDRSDDGVAIICRVDHE 68 (83)
T ss_pred EEEEEEeCCccCCCEEEEEE-CCEECcCceeeEeeCCCCCEEEEE-EEEEEEcccccCCCEEEEEEech
Confidence 678999877 7788999999 56665432110 0011 11111 112222 45678899998653
No 263
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=96.39 E-value=0.0043 Score=33.59 Aligned_cols=35 Identities=23% Similarity=0.512 Sum_probs=25.5
Q ss_pred CCeeeeCCceeEeecCCcEEEEeeecccC-CCeeEEE
Q psy16421 101 PPIVKIPSQLIGAHEGQQLVLECISEAYP-KSVNYWT 136 (151)
Q Consensus 101 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~ 136 (151)
+|.|...+.......+. +.|.|.+.+.| .+.++|+
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~ 36 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY 36 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE
Confidence 35666665555444444 99999999988 7789999
No 264
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.38 E-value=0.037 Score=32.08 Aligned_cols=69 Identities=16% Similarity=0.381 Sum_probs=39.4
Q ss_pred CCeEEEEeeecC-CC-CCeEEEEeCCeeeEecccC---C--CCCCeeeeCCceeEeecCCcEEEEeeeccc--CCCe-eE
Q psy16421 65 GSNVSMRCAASG-SP-PPSIMWRREGGEMITNSFN---N--TVPPIVKIPSQLIGAHEGQQLVLECISEAY--PKSV-NY 134 (151)
Q Consensus 65 g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~~~~~---~--~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~--p~~~-~~ 134 (151)
++...|.|.+.| .| ...+.|++ ||+.+..... . ..--.+.. .+...+..++...++|.+... +.|. +.
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~-~g~~~~~~~~~~~~~~~~Dgty~~-~s~L~v~~~~~~~ytC~V~H~~l~~p~~~~ 92 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLK-NGVPVTDGVSETRYYPRQDLSFQK-FSYLNFTPEEGDIYSCIVEHWGLETPATRY 92 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEE-CCeEccCceEEeeeEeCCCCcEEE-EEEEEEECCCCCeEEEEEEeCCCCCceEEE
Confidence 556799999988 55 45789999 6666542110 0 00011211 122344556667899998653 3444 45
Q ss_pred E
Q psy16421 135 W 135 (151)
Q Consensus 135 W 135 (151)
|
T Consensus 93 w 93 (94)
T cd05767 93 W 93 (94)
T ss_pred c
Confidence 5
No 265
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=96.34 E-value=0.014 Score=33.14 Aligned_cols=26 Identities=42% Similarity=1.101 Sum_probs=20.2
Q ss_pred CCeEEEEeee-cCCCCCeEEEEeCCee
Q psy16421 65 GSNVSMRCAA-SGSPPPSIMWRREGGE 90 (151)
Q Consensus 65 g~~~~l~C~~-~g~~~~~~~W~~~~~~ 90 (151)
|+.+.+.|.+ .++|.+.+.|+.+++.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~ 40 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGP 40 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCc
Confidence 6799999975 6699999999994433
No 266
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=96.23 E-value=0.0088 Score=33.47 Aligned_cols=25 Identities=36% Similarity=0.899 Sum_probs=20.6
Q ss_pred EEEEeeecC-CCCCeEEEEeCCeeeEe
Q psy16421 68 VSMRCAASG-SPPPSIMWRREGGEMIT 93 (151)
Q Consensus 68 ~~l~C~~~g-~~~~~~~W~~~~~~~~~ 93 (151)
+.|.|.+.| .|.+.+.|++ +++++.
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~-~g~~l~ 27 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFR-DGEVLD 27 (82)
T ss_pred EEEEEEEeCccCCCEEEEEE-CCEEcc
Confidence 679999976 7888999999 677654
No 267
>PHA03269 envelope glycoprotein C; Provisional
Probab=96.21 E-value=0.16 Score=37.90 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=47.8
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccceeEEeecCCCCeeEeCCCCCceEeecCCeEEEEeeecC-CC-
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SP- 78 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~~- 78 (151)
|.+++..++|.|.=++.+...........+.| .+..+|.+...+ --+.+|+...=.|.+.. .|
T Consensus 293 I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV-----------~~yr~PsVsV~p----~PVL~Ge~YkAtC~vA~YYPp 357 (566)
T PHA03269 293 ILSLDASTEGTYIWRVIHTANKNVINEHHITV-----------MSYKRPNITVIG----DPVLLGNPYAAYCKVNKYYPP 357 (566)
T ss_pred EeecccccCceEEEEEecCCCCceeeeeEEEE-----------EEecCCCccccC----CccccCCCceEEEEeeeecCC
Confidence 56788999999986665432212222222222 224667766643 35678999999999754 44
Q ss_pred -CCeEEEEeCCeeeEe
Q psy16421 79 -PPSIMWRREGGEMIT 93 (151)
Q Consensus 79 -~~~~~W~~~~~~~~~ 93 (151)
+..+.|+++ +..+.
T Consensus 358 ~SvrlrWf~n-g~~V~ 372 (566)
T PHA03269 358 HSVIVKWTSN-FGNIG 372 (566)
T ss_pred CceEEEEEeC-CcccC
Confidence 457899994 44433
No 268
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=96.19 E-value=0.011 Score=31.22 Aligned_cols=25 Identities=40% Similarity=1.087 Sum_probs=21.5
Q ss_pred CCeEEEEeee-cCCCCCeEEEEeCCe
Q psy16421 65 GSNVSMRCAA-SGSPPPSIMWRREGG 89 (151)
Q Consensus 65 g~~~~l~C~~-~g~~~~~~~W~~~~~ 89 (151)
|+++.|.|.+ .+.+...+.|++++.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~ 26 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQ 26 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTT
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCc
Confidence 7899999999 777889999999543
No 269
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=96.19 E-value=0.032 Score=31.46 Aligned_cols=59 Identities=20% Similarity=0.433 Sum_probs=33.1
Q ss_pred EEEEeeecC-CCCCeEEEEeCCeeeEecccC-C---CCCCeeeeCCc--eeEeecCCcEEEEeeecc
Q psy16421 68 VSMRCAASG-SPPPSIMWRREGGEMITNSFN-N---TVPPIVKIPSQ--LIGAHEGQQLVLECISEA 127 (151)
Q Consensus 68 ~~l~C~~~g-~~~~~~~W~~~~~~~~~~~~~-~---~~~p~~~~~~~--~~~~~~g~~~~l~C~~~g 127 (151)
+.|.|.+.+ +|.+.+.|++ +++.+..... . ...-.+..... .....+.+...+.|.+..
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k-~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h 67 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRK-GDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGH 67 (83)
T ss_pred EEEEEEecCccCCCEeEEEE-CCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEEC
Confidence 578999866 6889999999 6666543211 0 00001111110 001224566899999864
No 270
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.16 E-value=0.057 Score=31.25 Aligned_cols=69 Identities=16% Similarity=0.329 Sum_probs=39.7
Q ss_pred cCCeEEEEeeecC-CCC-CeEEEEeCCeeeEecccCCCCCC------eeeeCCceeEeecCCcEEEEeeeccc--CCCe-
Q psy16421 64 EGSNVSMRCAASG-SPP-PSIMWRREGGEMITNSFNNTVPP------IVKIPSQLIGAHEGQQLVLECISEAY--PKSV- 132 (151)
Q Consensus 64 ~g~~~~l~C~~~g-~~~-~~~~W~~~~~~~~~~~~~~~~~p------~~~~~~~~~~~~~g~~~~l~C~~~g~--p~~~- 132 (151)
.|+...|.|.+.| .|. ..+.|++ +++.+..... ...+ .+.. .+...+..+....++|.+... +.+.
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~~~~~-~~~~~~~~dgTy~~-~s~L~~~~~~~~~ysC~V~H~~l~~~~~ 89 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFK-NGQEETEGVV-STELIPNGDWTYQI-LVMLETTPSRGDTYTCVVEHSSLQEPLT 89 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEE-CCeecCCCce-ecceEECCCCcEEE-EEEEEEcCCCCCEEEEEEEeCCCCCceE
Confidence 4788999999988 553 3789999 6666543210 0000 1111 122234455666899998753 4443
Q ss_pred eEE
Q psy16421 133 NYW 135 (151)
Q Consensus 133 ~~W 135 (151)
..|
T Consensus 90 ~~~ 92 (94)
T cd05766 90 VDW 92 (94)
T ss_pred Eec
Confidence 555
No 271
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=96.13 E-value=0.015 Score=33.74 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=27.4
Q ss_pred ceeEeecCCcEEEEeeecccCCCeeEEEcCCcee
Q psy16421 109 QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM 142 (151)
Q Consensus 109 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~ 142 (151)
..+++.+|+++.|+|.+.+.....+.|++.+..+
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~ 38 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQT 38 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcE
Confidence 3567899999999999998777778888766444
No 272
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=95.99 E-value=0.021 Score=33.00 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=27.6
Q ss_pred CeeeeCCceeEeecCCcEEEEeeecccCCCeeEEEcCCce
Q psy16421 102 PIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGD 141 (151)
Q Consensus 102 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~ 141 (151)
|.|...+. ..+.+|++++|.|.... +...+.|+|+|..
T Consensus 2 P~l~a~p~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~ 39 (94)
T cd05711 2 PFLSAHPS-PVVPSGENVTLQCHSDI-RFDRFILYKEGRS 39 (94)
T ss_pred CEEEecCC-CccCCCCeEEEEEecCC-CCCEEEEEECCCC
Confidence 45555443 34789999999998765 4557999998753
No 273
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=95.99 E-value=0.0099 Score=38.65 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=25.1
Q ss_pred CccccccCCeEEEEEEEcCCCC-CCccceEEEEe
Q psy16421 1 MTEVSREHMGAYLCIASNGVPP-SVSKRIMLIVQ 33 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~ 33 (151)
|++|+++|+|.|.|....-... ..+...-|+|.
T Consensus 89 IknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt 122 (189)
T PHA02987 89 IKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVT 122 (189)
T ss_pred EEeCChhhCeEEEEEEEecCCCCCceeEEEEEEE
Confidence 5789999999999997665443 56666677765
No 274
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.81 E-value=0.013 Score=34.30 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=26.4
Q ss_pred CCceeEeecCCcEEEEeeecc-c-CCC-eeEEEcCCce
Q psy16421 107 PSQLIGAHEGQQLVLECISEA-Y-PKS-VNYWTREKGD 141 (151)
Q Consensus 107 ~~~~~~~~~g~~~~l~C~~~g-~-p~~-~~~W~k~~~~ 141 (151)
++....+..+..+.|.|.+.| + |.. .|.|.++|+.
T Consensus 10 pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 10 RPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred CcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 455555667899999999999 5 543 4999998753
No 275
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=95.76 E-value=0.04 Score=32.22 Aligned_cols=42 Identities=24% Similarity=0.516 Sum_probs=29.1
Q ss_pred CCeeEeCCCCCceEeecCCeEEEEeeecCCCCC-eEEEEeCCeeeEe
Q psy16421 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPP-SIMWRREGGEMIT 93 (151)
Q Consensus 48 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~-~~~W~~~~~~~~~ 93 (151)
||.+... ....+.+|+.+.|.|.+.+.|+| .+.|.. ++..+.
T Consensus 2 pP~i~~~---~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w-~~~~i~ 44 (98)
T cd05898 2 PPIISSE---QVQYAVRGERGKVKCFIGSTPPPDRIAWAW-KENVLE 44 (98)
T ss_pred CCEEecC---ceEEEeCCCcEEEEEEEccCCCCcEEEEEE-cccccc
Confidence 4555333 45677899999999999887876 467876 344443
No 276
>PHA03376 BARF1; Provisional
Probab=95.58 E-value=0.091 Score=34.45 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=21.1
Q ss_pred CCcEEEEeeecccCCCeeEEEcCCc
Q psy16421 116 GQQLVLECISEAYPKSVNYWTREKG 140 (151)
Q Consensus 116 g~~~~l~C~~~g~p~~~~~W~k~~~ 140 (151)
-+...+.|.+-|.|.|.++|+-|.+
T Consensus 139 ~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 139 FSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred CCeeEEEEecCCcCCchheeccccC
Confidence 6677899998889999999997643
No 277
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=95.57 E-value=0.02 Score=33.39 Aligned_cols=27 Identities=22% Similarity=0.553 Sum_probs=23.0
Q ss_pred EeecCCcEEEEeeeccc-CCCeeEEEcC
Q psy16421 112 GAHEGQQLVLECISEAY-PKSVNYWTRE 138 (151)
Q Consensus 112 ~~~~g~~~~l~C~~~g~-p~~~~~W~k~ 138 (151)
.+.+|+++.|.|.+.+. +...+.|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~ 29 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQ 29 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEE
Confidence 46799999999999876 6677999984
No 278
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=95.52 E-value=0.19 Score=29.00 Aligned_cols=67 Identities=13% Similarity=0.111 Sum_probs=37.7
Q ss_pred ceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEeccc-CCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421 59 DIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF-NNTVPPIVKIPSQLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 59 ~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g 127 (151)
...+.+|++++|.|.... ....+.|+|++. ...... .......+........+..++.....|...-
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~-~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGR-SKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CCccCCCCeEEEEEecCC-CCCEEEEEECCC-CCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 356778999999998765 556799999543 211000 0000011111111122567888999998653
No 279
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=95.52 E-value=0.032 Score=33.42 Aligned_cols=31 Identities=29% Similarity=0.745 Sum_probs=23.9
Q ss_pred eecCCeEEEEeeecC-CC-CCeEEEEeCCeeeEe
Q psy16421 62 VREGSNVSMRCAASG-SP-PPSIMWRREGGEMIT 93 (151)
Q Consensus 62 ~~~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~ 93 (151)
...|+.++|.|.+.| .| ...+.|++ |++.+.
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~k-ng~~~~ 50 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLK-NGNELS 50 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEE-CCEECc
Confidence 446788999999988 55 36899999 676654
No 280
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=95.50 E-value=0.045 Score=32.43 Aligned_cols=29 Identities=21% Similarity=0.610 Sum_probs=24.7
Q ss_pred CceEeecCCeEEEEeeecCCCCCeEEEEeC
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPPSIMWRRE 87 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~ 87 (151)
..+.+.+|+++.|.|...+ +...+.|++.
T Consensus 6 ~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq 34 (110)
T cd05899 6 RYLIKGRGQSVTLRCSQTS-GHDNMYWYRQ 34 (110)
T ss_pred CceEEcCCCcEEEEEEECC-CCCEEEEEEE
Confidence 4577889999999999887 6788999984
No 281
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=95.49 E-value=0.031 Score=31.38 Aligned_cols=25 Identities=32% Similarity=0.837 Sum_probs=19.9
Q ss_pred EEEEeeecC-CCCCeEEEEeCCeeeEe
Q psy16421 68 VSMRCAASG-SPPPSIMWRREGGEMIT 93 (151)
Q Consensus 68 ~~l~C~~~g-~~~~~~~W~~~~~~~~~ 93 (151)
+.|.|.+.+ .|.+.+.|++ +++.+.
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~-~~~~l~ 27 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFK-GDKELK 27 (82)
T ss_pred EEEEEEecCcCcCCeEEEEE-CCEEcc
Confidence 679999865 6888999999 566654
No 282
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=95.47 E-value=0.018 Score=33.43 Aligned_cols=32 Identities=9% Similarity=-0.017 Sum_probs=24.7
Q ss_pred EeecCCcEEEEee-ecc----cCCCeeEEEcCCceec
Q psy16421 112 GAHEGQQLVLECI-SEA----YPKSVNYWTREKGDMI 143 (151)
Q Consensus 112 ~~~~g~~~~l~C~-~~g----~p~~~~~W~k~~~~~~ 143 (151)
.+..|.+..|.|. ..+ .+.+.++|+||+..+.
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~ 42 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLD 42 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECc
Confidence 4678999999998 233 4677899999976654
No 283
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=95.44 E-value=0.14 Score=29.65 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=39.5
Q ss_pred cCCeEEEEeeecC-CC-CCeEEEEeCCeeeEecccCCCCC----CeeeeCCceeEeecCCcEEEEeeecc--cCCCe-eE
Q psy16421 64 EGSNVSMRCAASG-SP-PPSIMWRREGGEMITNSFNNTVP----PIVKIPSQLIGAHEGQQLVLECISEA--YPKSV-NY 134 (151)
Q Consensus 64 ~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~~~~~~~~~----p~~~~~~~~~~~~~g~~~~l~C~~~g--~p~~~-~~ 134 (151)
.|....|.|.+.| .| ...+.|++ ||+.+......... -.+.. .....+..++.-.++|.+.. -+.|. +.
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~-dg~~~~~~~~~~~~p~~d~tyq~-~s~l~~~~~~~~~ysC~V~H~~l~~p~~~~ 91 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLK-NGVKIPKVEQSDLSFSKDWTFYL-LKSTEFTPTKGDEYACRVRHNSMSEPKKYK 91 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEE-CCEECCCcEECcEEECCCCCEEE-EEEEEECCCCCCeEEEEEEECCCCCCEEEe
Confidence 3666789999988 55 45789999 67665411100000 01111 12334556677779999864 34443 55
Q ss_pred E
Q psy16421 135 W 135 (151)
Q Consensus 135 W 135 (151)
|
T Consensus 92 w 92 (93)
T cd05770 92 W 92 (93)
T ss_pred C
Confidence 5
No 284
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.31 E-value=0.067 Score=31.47 Aligned_cols=30 Identities=23% Similarity=0.525 Sum_probs=24.1
Q ss_pred CceEeecCCeEEEEeeecCCC-CCeEEEEeC
Q psy16421 58 SDIMVREGSNVSMRCAASGSP-PPSIMWRRE 87 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~-~~~~~W~~~ 87 (151)
..+.+.+|+++.|.|.+.+.. ...+.|++.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq 38 (106)
T cd04980 8 ATLSVSPGESATISCKASQSVSSNYLAWYQQ 38 (106)
T ss_pred CcEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence 456788999999999987654 567999973
No 285
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=95.31 E-value=0.055 Score=31.85 Aligned_cols=30 Identities=33% Similarity=0.623 Sum_probs=25.8
Q ss_pred CceEeecCCeEEEEeeecCCCCCeEEEEeC
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPPSIMWRRE 87 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~ 87 (151)
..+.+.+|+++.|.|...+.+...+.|++.
T Consensus 6 ~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~ 35 (109)
T cd04983 6 QSLSVQEGENVTLNCNYSTSTFYYLFWYRQ 35 (109)
T ss_pred CceEEcCCCCEEEEEEECCCCccEEEEEEE
Confidence 467788999999999998777889999983
No 286
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=95.23 E-value=0.049 Score=32.61 Aligned_cols=33 Identities=15% Similarity=0.393 Sum_probs=25.9
Q ss_pred eeCCceeEeecCCcEEEEeeeccc-CCCeeEEEc
Q psy16421 105 KIPSQLIGAHEGQQLVLECISEAY-PKSVNYWTR 137 (151)
Q Consensus 105 ~~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~k 137 (151)
...+..+.+..|+++.|.|..... ....+.|+|
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyr 36 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYK 36 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEE
Confidence 345667789999999999997653 445699997
No 287
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=95.20 E-value=0.094 Score=29.79 Aligned_cols=61 Identities=18% Similarity=0.344 Sum_probs=40.6
Q ss_pred CceEeecCCeEEEEeeecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeC---CceeEeecCCcEEEEeeec
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIP---SQLIGAHEGQQLVLECISE 126 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~g~~~~l~C~~~ 126 (151)
+.+++..|+.+.|.|...+. .+.+.|++ ++..+.... .+... .....+..++.....|.+.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~-ng~~l~~~~------r~~~~~~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLF-NGTPLNAQF------SYRVGTDGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEE-CCcccCCCc------ceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence 45678899999999999874 66999999 555543211 11111 1122345678889999874
No 288
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=94.92 E-value=0.035 Score=32.16 Aligned_cols=27 Identities=11% Similarity=0.399 Sum_probs=21.7
Q ss_pred EeecCCcEEEEeeeccc--CCCeeEEEcC
Q psy16421 112 GAHEGQQLVLECISEAY--PKSVNYWTRE 138 (151)
Q Consensus 112 ~~~~g~~~~l~C~~~g~--p~~~~~W~k~ 138 (151)
.+.+|+++.|.|...+. ....+.|+|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q 30 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQ 30 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEE
Confidence 46789999999998765 4566999973
No 289
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=94.88 E-value=0.044 Score=31.36 Aligned_cols=65 Identities=17% Similarity=0.362 Sum_probs=38.4
Q ss_pred ecCCeEEEEeeecCC-C-CCeEEEEeCCeeeEecccC---C--CCCCeeeeCCceeEeecC---CcEEEEeeecccC
Q psy16421 63 REGSNVSMRCAASGS-P-PPSIMWRREGGEMITNSFN---N--TVPPIVKIPSQLIGAHEG---QQLVLECISEAYP 129 (151)
Q Consensus 63 ~~g~~~~l~C~~~g~-~-~~~~~W~~~~~~~~~~~~~---~--~~~p~~~~~~~~~~~~~g---~~~~l~C~~~g~p 129 (151)
..|+.+.|.|.+.|. | ...+.|++ +++.+..... . ...-.+.. .+...+... +...++|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~-~g~~~~~~~~~~~~~~~~~gt~~~-~s~l~v~~~~~~~~~~y~C~v~h~~ 85 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLK-NGKELTSGVTTTPPVPNSDGTYSV-SSQLTVSPSDWNSGDTYTCVVTHES 85 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEE-CCEECCCceeccccccCCCCCEEE-EEEEEECHHHhCCCCCEEEEEEeCC
Confidence 358899999999886 5 46899999 6666543221 0 00001111 112223333 7889999987543
No 290
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=94.84 E-value=0.079 Score=31.05 Aligned_cols=34 Identities=26% Similarity=0.570 Sum_probs=27.3
Q ss_pred eeCCceeEeecCCcEEEEeeec-ccCCCeeEEEcC
Q psy16421 105 KIPSQLIGAHEGQQLVLECISE-AYPKSVNYWTRE 138 (151)
Q Consensus 105 ~~~~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~k~ 138 (151)
...+..+.+.+|+++.|.|... ......++|++.
T Consensus 5 t~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~ 39 (114)
T PF07686_consen 5 TQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQ 39 (114)
T ss_dssp EEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEE
T ss_pred EEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEE
Confidence 3446677899999999999998 455667999983
No 291
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=94.82 E-value=0.05 Score=30.84 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=20.7
Q ss_pred CCcEEEEeeecccCC--CeeEEEcCCce
Q psy16421 116 GQQLVLECISEAYPK--SVNYWTREKGD 141 (151)
Q Consensus 116 g~~~~l~C~~~g~p~--~~~~W~k~~~~ 141 (151)
|+++.|.|.+.+.+. ..+.|.+++..
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~ 28 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKK 28 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcc
Confidence 789999999988664 46899987653
No 292
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=94.66 E-value=0.3 Score=29.43 Aligned_cols=72 Identities=19% Similarity=0.447 Sum_probs=41.7
Q ss_pred cCCeEEEEeeecC-CCC-CeEEEEeCCeeeEecccC---CCCCC---eeeeCCceeEeecC----CcEEEEeeecccCCC
Q psy16421 64 EGSNVSMRCAASG-SPP-PSIMWRREGGEMITNSFN---NTVPP---IVKIPSQLIGAHEG----QQLVLECISEAYPKS 131 (151)
Q Consensus 64 ~g~~~~l~C~~~g-~~~-~~~~W~~~~~~~~~~~~~---~~~~p---~~~~~~~~~~~~~g----~~~~l~C~~~g~p~~ 131 (151)
+++.+.|.|.+.+ .|. ..+.|++ |++.+..... ....+ .+.. .+...+... ....++|.+......
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~k-ng~~l~~g~~~~~~~~~~~~gTYs~-~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKV-NGKEVTDGVATDPQALRENTSTYSI-SSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEE-CCEECCCCcccccceecCCCCeEEE-EEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 4677999999988 554 4789999 5665542210 00011 2221 122233333 257899999876555
Q ss_pred e-eEEEc
Q psy16421 132 V-NYWTR 137 (151)
Q Consensus 132 ~-~~W~k 137 (151)
. ..|..
T Consensus 95 ~~~~~~~ 101 (115)
T cd05769 95 DTDKWQS 101 (115)
T ss_pred cceeeee
Confidence 4 78864
No 293
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=94.59 E-value=0.085 Score=31.52 Aligned_cols=30 Identities=30% Similarity=0.554 Sum_probs=24.4
Q ss_pred CceEeecCCeEEEEeeecC--CCCCeEEEEeC
Q psy16421 58 SDIMVREGSNVSMRCAASG--SPPPSIMWRRE 87 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g--~~~~~~~W~~~ 87 (151)
..+.+.+|+++.|.|...+ .+.+.+.|++.
T Consensus 6 ~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq 37 (116)
T cd04982 6 LSITREESKSVTISCKVSGIDFSTTYIHWYRQ 37 (116)
T ss_pred CeEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence 4566778999999999876 56778999984
No 294
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=94.53 E-value=0.11 Score=30.27 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=25.6
Q ss_pred CceeEeecCCcEEE-Eeeec-ccCCCeeEEEcCC
Q psy16421 108 SQLIGAHEGQQLVL-ECISE-AYPKSVNYWTREK 139 (151)
Q Consensus 108 ~~~~~~~~g~~~~l-~C~~~-g~p~~~~~W~k~~ 139 (151)
.....+.+|+.+.+ .|.+. |+|.+.|+|+.+.
T Consensus 8 ~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~ 41 (97)
T cd07704 8 GPSLLIDGGNGTTLAACCAAEGRPAADVTWETNV 41 (97)
T ss_pred CCeeEeecCcceeEEEEEccCCccCCEeEEeCCC
Confidence 34456778999999 99965 7999999999863
No 295
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=94.51 E-value=0.22 Score=29.03 Aligned_cols=70 Identities=14% Similarity=0.349 Sum_probs=38.8
Q ss_pred ceEeecCCeEEE-Eee-ecCCCCCeEEEEeCCeeeEecccCCCCCCeeeeCCcee--EeecCCcEEEEeeeccc
Q psy16421 59 DIMVREGSNVSM-RCA-ASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLI--GAHEGQQLVLECISEAY 128 (151)
Q Consensus 59 ~~~~~~g~~~~l-~C~-~~g~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~g~~~~l~C~~~g~ 128 (151)
...+.+|+.+.+ .|. +.|.|.+.+.|+.+..............-.+++..... .....+-..+.|.+...
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~ 83 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHP 83 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCc
Confidence 345667888888 788 57799999999984222211111011111333322111 12235677889998653
No 296
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=94.50 E-value=0.064 Score=31.68 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=21.3
Q ss_pred EeecCCcEEEEeeecccC-CCeeEEEcC
Q psy16421 112 GAHEGQQLVLECISEAYP-KSVNYWTRE 138 (151)
Q Consensus 112 ~~~~g~~~~l~C~~~g~p-~~~~~W~k~ 138 (151)
.+.+|+++.|.|.+.+.. ...+.|+|-
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq 29 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRW 29 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEE
Confidence 478999999999987643 346999973
No 297
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=94.39 E-value=0.035 Score=29.72 Aligned_cols=29 Identities=10% Similarity=0.207 Sum_probs=21.2
Q ss_pred eecCCcEEEEeeecccCCCeeEEEcCCceecc
Q psy16421 113 AHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 113 ~~~g~~~~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
...|..|.|+|...+. .+.|.+|+..+.+
T Consensus 4 sisGTtVtlTCP~~~~---~i~W~~n~~~~~g 32 (65)
T cd07692 4 SISGTTVTVTCPLSGD---DIKWKKNDQVSQG 32 (65)
T ss_pred EEeccEEEEECCCCCC---CceEEeCCccCCC
Confidence 3579999999976532 2999999754443
No 298
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=94.34 E-value=0.2 Score=27.43 Aligned_cols=58 Identities=22% Similarity=0.425 Sum_probs=32.1
Q ss_pred EEEEeeecC-CCC-CeEEEEeCCeeeEecccCCCCCC------eeeeCCceeEe---ecCCcEEEEeeeccc
Q psy16421 68 VSMRCAASG-SPP-PSIMWRREGGEMITNSFNNTVPP------IVKIPSQLIGA---HEGQQLVLECISEAY 128 (151)
Q Consensus 68 ~~l~C~~~g-~~~-~~~~W~~~~~~~~~~~~~~~~~p------~~~~~~~~~~~---~~g~~~~l~C~~~g~ 128 (151)
+.|.|.+.| .|. ..+.|++ +++++.... ....+ .+.. .+...+ ..+....++|.+...
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k-~g~~~~~~~-~~~~~~~~~~gt~~~-~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLR-NGQEVTSGV-STTDPLKNSDGTYFL-SSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEE-CCEECCCCE-EECceEECCCCCEEE-EEEEEEccccCCCCCEEEEEEEEc
Confidence 679999988 454 5899999 666532111 01111 1111 111222 346778999998653
No 299
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=94.16 E-value=0.11 Score=30.48 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=28.2
Q ss_pred CceEeecCCeEEEEeeecCCCCCe-EEEEeCCeeeE
Q psy16421 58 SDIMVREGSNVSMRCAASGSPPPS-IMWRREGGEMI 92 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~~~~-~~W~~~~~~~~ 92 (151)
..+.+.+|+.+.|.|.....|+|. +.|.+ ++..+
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~-~~~~l 45 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIY-MNRTL 45 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEc-CCccc
Confidence 356788999999999999999997 99998 44443
No 300
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=94.05 E-value=0.63 Score=27.23 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=36.3
Q ss_pred eecCCeEEEEeeecC-CCC--CeEEEEeCCeeeEecccC-------CCCC--CeeeeCCceeEeecCCcEEEEeeec
Q psy16421 62 VREGSNVSMRCAASG-SPP--PSIMWRREGGEMITNSFN-------NTVP--PIVKIPSQLIGAHEGQQLVLECISE 126 (151)
Q Consensus 62 ~~~g~~~~l~C~~~g-~~~--~~~~W~~~~~~~~~~~~~-------~~~~--p~~~~~~~~~~~~~g~~~~l~C~~~ 126 (151)
+.+|..+++.|.+.+ .|. ..+.|++ +...+..... ...+ ..+...+ ..+.+-..|+|.+.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~Llk-G~~~l~~~~f~~~~~~ks~~~~~~~vtftp----treD~g~~fsC~A~ 83 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLK-GETLLPSKSFLEDMDKKSLETKSLEVTFTP----TIEDIGKVLVCRAK 83 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEec-CcceecccccccccccCCCCCcceeEEEec----chhhCCcEEEEEEE
Confidence 467999999999865 554 5789998 5554432211 0112 1222222 25677789999974
No 301
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=93.96 E-value=0.086 Score=30.85 Aligned_cols=29 Identities=14% Similarity=0.542 Sum_probs=22.3
Q ss_pred cCCeEEEEeeecC-CC-CCeEEEEeCCeeeEe
Q psy16421 64 EGSNVSMRCAASG-SP-PPSIMWRREGGEMIT 93 (151)
Q Consensus 64 ~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~ 93 (151)
.++.+.|.|.+.| .| ...+.|++ ||+.+.
T Consensus 16 ~~~~~~L~C~~~gfyP~~i~v~W~~-~g~~~~ 46 (100)
T cd07699 16 KSGKATLVCLINDFYPGFATVQWKV-DGATVS 46 (100)
T ss_pred cCCCcEEEEEEEeEECCCCEEEEEE-CCEECc
Confidence 4677999999988 55 56789999 666653
No 302
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=93.88 E-value=0.048 Score=28.21 Aligned_cols=20 Identities=40% Similarity=0.790 Sum_probs=16.3
Q ss_pred CccccccCCeEEEEEEEcCC
Q psy16421 1 MTEVSREHMGAYLCIASNGV 20 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~ 20 (151)
|.++..+|.|.|.|.+.+..
T Consensus 47 i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 47 ISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred ECccCcccCcEEEEEEecCc
Confidence 35677889999999998765
No 303
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=93.80 E-value=0.061 Score=28.84 Aligned_cols=20 Identities=50% Similarity=1.182 Sum_probs=17.2
Q ss_pred CeEEEEeeecCCC-CCeEEEE
Q psy16421 66 SNVSMRCAASGSP-PPSIMWR 85 (151)
Q Consensus 66 ~~~~l~C~~~g~~-~~~~~W~ 85 (151)
..+.|.|.+.+.+ .+.++|+
T Consensus 16 ~~~~l~C~~~~~~~~~~~~W~ 36 (75)
T PF13927_consen 16 GSVTLTCSAEGGPPPPSISWY 36 (75)
T ss_dssp EEEEEEEEESSEESSEEEEEE
T ss_pred eeEEEEEEEccccCCeEEEEE
Confidence 3399999998877 8899999
No 304
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=93.66 E-value=0.12 Score=29.94 Aligned_cols=28 Identities=21% Similarity=0.510 Sum_probs=21.7
Q ss_pred EeecCCeEEEEeeecCC--CCCeEEEEeCC
Q psy16421 61 MVREGSNVSMRCAASGS--PPPSIMWRREG 88 (151)
Q Consensus 61 ~~~~g~~~~l~C~~~g~--~~~~~~W~~~~ 88 (151)
.+.+|+++.|.|...+. ....+.|++..
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~ 31 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQK 31 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEEC
Confidence 45689999999998764 45679999743
No 305
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=93.56 E-value=0.17 Score=30.50 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=23.0
Q ss_pred CceeEeecCCcEEEEeeecccC--CCeeEEEc
Q psy16421 108 SQLIGAHEGQQLVLECISEAYP--KSVNYWTR 137 (151)
Q Consensus 108 ~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~k 137 (151)
+....+.+|+++.|.|...+.- ...+.|+|
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYk 35 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVR 35 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEE
Confidence 4556789999999999876533 35599997
No 306
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=93.48 E-value=0.18 Score=28.79 Aligned_cols=32 Identities=13% Similarity=0.063 Sum_probs=24.2
Q ss_pred eeEeecCCcEEEEeeecccC--CCeeEEEcCCce
Q psy16421 110 LIGAHEGQQLVLECISEAYP--KSVNYWTREKGD 141 (151)
Q Consensus 110 ~~~~~~g~~~~l~C~~~g~p--~~~~~W~k~~~~ 141 (151)
...+..|++++|+|.....+ .+.+.|+..++.
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~ 41 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNK 41 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCc
Confidence 34678999999999985534 458999975543
No 307
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=93.43 E-value=0.18 Score=29.79 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=23.9
Q ss_pred eeEeecCCcEEEEeeec-----------ccCCCeeEEEcCCceec
Q psy16421 110 LIGAHEGQQLVLECISE-----------AYPKSVNYWTREKGDMI 143 (151)
Q Consensus 110 ~~~~~~g~~~~l~C~~~-----------g~p~~~~~W~k~~~~~~ 143 (151)
...+.+|+.+.|.|..- ..+...+.|+|++....
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~ 53 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGE 53 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCC
Confidence 35678999999999961 11234699999864443
No 308
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=93.32 E-value=0.12 Score=30.34 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=20.7
Q ss_pred eecCCcEEEEeeecccCCCeeEEEcC
Q psy16421 113 AHEGQQLVLECISEAYPKSVNYWTRE 138 (151)
Q Consensus 113 ~~~g~~~~l~C~~~g~p~~~~~W~k~ 138 (151)
+.+|+++.|.|.....-...+.|+|.
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq 28 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQ 28 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEe
Confidence 57899999999986654456999974
No 309
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=93.26 E-value=0.097 Score=29.70 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=20.7
Q ss_pred CCcEEEEeeecccCCCeeEEEcCCc
Q psy16421 116 GQQLVLECISEAYPKSVNYWTREKG 140 (151)
Q Consensus 116 g~~~~l~C~~~g~p~~~~~W~k~~~ 140 (151)
|++|.|.|.....+...+.|+|+..
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~ 25 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKD 25 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCC
Confidence 7899999998876666799999753
No 310
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=93.18 E-value=0.13 Score=30.39 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=21.7
Q ss_pred eEeecCCcEEEEeeecccCCCeeEEEcC
Q psy16421 111 IGAHEGQQLVLECISEAYPKSVNYWTRE 138 (151)
Q Consensus 111 ~~~~~g~~~~l~C~~~g~p~~~~~W~k~ 138 (151)
..+.+|+++.|.|.....+...+.|+|.
T Consensus 8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg 35 (105)
T cd05774 8 PQVAEGENVLLLVHNLPENLLAYAWYKG 35 (105)
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEcC
Confidence 4578999999999765444447999995
No 311
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=92.97 E-value=0.24 Score=29.70 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=22.7
Q ss_pred CceeEeecCCcEEEEeeecccC----CCeeEEEc
Q psy16421 108 SQLIGAHEGQQLVLECISEAYP----KSVNYWTR 137 (151)
Q Consensus 108 ~~~~~~~~g~~~~l~C~~~g~p----~~~~~W~k 137 (151)
+..+.+.+|+++.|.|.....+ ...+.|++
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~ 38 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNF 38 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEE
Confidence 5567889999999999976433 23599974
No 312
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=92.76 E-value=0.26 Score=29.52 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=22.7
Q ss_pred CceeEeecCCcEEEEeeecccC----CCeeEEEc
Q psy16421 108 SQLIGAHEGQQLVLECISEAYP----KSVNYWTR 137 (151)
Q Consensus 108 ~~~~~~~~g~~~~l~C~~~g~p----~~~~~W~k 137 (151)
+..+.+.+|+++.|.|...... ...+.|++
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~ 38 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSF 38 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEE
Confidence 5566788999999999976432 24599975
No 313
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=92.67 E-value=0.18 Score=25.92 Aligned_cols=24 Identities=17% Similarity=0.526 Sum_probs=19.2
Q ss_pred EEEEeeecccCCCeeEEEcCCcee
Q psy16421 119 LVLECISEAYPKSVNYWTREKGDM 142 (151)
Q Consensus 119 ~~l~C~~~g~p~~~~~W~k~~~~~ 142 (151)
+.|.|.+.+.+...+.|++++...
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~ 24 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPL 24 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEEC
Confidence 468999988777889999976544
No 314
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=92.39 E-value=0.29 Score=32.04 Aligned_cols=31 Identities=13% Similarity=0.343 Sum_probs=25.3
Q ss_pred ceeEeecCCcEEEEeeec-ccCCCeeEEEcCC
Q psy16421 109 QLIGAHEGQQLVLECISE-AYPKSVNYWTREK 139 (151)
Q Consensus 109 ~~~~~~~g~~~~l~C~~~-g~p~~~~~W~k~~ 139 (151)
..+++.+|+++.|.|... +...+.+.|.|..
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~ 54 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNN 54 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcC
Confidence 345789999999999974 6667889999863
No 315
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=92.34 E-value=0.25 Score=28.47 Aligned_cols=29 Identities=14% Similarity=0.351 Sum_probs=22.7
Q ss_pred eEeecCCcEEEEeeecc-cCCCeeEEEcCC
Q psy16421 111 IGAHEGQQLVLECISEA-YPKSVNYWTREK 139 (151)
Q Consensus 111 ~~~~~g~~~~l~C~~~g-~p~~~~~W~k~~ 139 (151)
+.+.+|+++.|.|.... .+...+.|+|..
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~ 31 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWG 31 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCC
Confidence 45789999999999765 345679999853
No 316
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=92.08 E-value=0.34 Score=28.53 Aligned_cols=28 Identities=29% Similarity=0.572 Sum_probs=21.4
Q ss_pred EeecCCeEEEEeeecCC-CCCeEEEEeCC
Q psy16421 61 MVREGSNVSMRCAASGS-PPPSIMWRREG 88 (151)
Q Consensus 61 ~~~~g~~~~l~C~~~g~-~~~~~~W~~~~ 88 (151)
.+.+|++++|.|...+. ....+.|++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~ 30 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWR 30 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEEC
Confidence 46689999999998653 34579999743
No 317
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=91.68 E-value=0.3 Score=28.29 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=19.5
Q ss_pred cCCcEEEEeeec-ccCCCeeEEEcC
Q psy16421 115 EGQQLVLECISE-AYPKSVNYWTRE 138 (151)
Q Consensus 115 ~g~~~~l~C~~~-g~p~~~~~W~k~ 138 (151)
......+.|.+. |+|.+.|+|+++
T Consensus 14 ~~~~~va~C~s~~gkP~a~ItW~~~ 38 (95)
T cd05719 14 GEPVTVATCVSANGKPPATISWETT 38 (95)
T ss_pred CCccEEEEEECCCCcCCCEEEEEeC
Confidence 345667889984 799999999996
No 318
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=91.57 E-value=0.26 Score=28.60 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=19.6
Q ss_pred cCCcEEEEeeec-ccCCCeeEEEcC
Q psy16421 115 EGQQLVLECISE-AYPKSVNYWTRE 138 (151)
Q Consensus 115 ~g~~~~l~C~~~-g~p~~~~~W~k~ 138 (151)
......+.|.+. |+|.+.|+|+++
T Consensus 14 ~~~~~va~C~s~~gkPaa~IsW~~~ 38 (95)
T cd07703 14 TIPVPVAKCVSANGRPPARISWSST 38 (95)
T ss_pred CCccEEEEEEcCCCCCCcEEEEEcC
Confidence 345678999976 799999999987
No 319
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=91.53 E-value=0.6 Score=27.84 Aligned_cols=30 Identities=27% Similarity=0.579 Sum_probs=23.3
Q ss_pred CceEeecCCeEEEEeeecCC-CCCeEEEEeC
Q psy16421 58 SDIMVREGSNVSMRCAASGS-PPPSIMWRRE 87 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~-~~~~~~W~~~ 87 (151)
..+.+.+|+++.|.|..... ....+.|++.
T Consensus 7 ~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq 37 (116)
T cd07706 7 PDVSVQVGEEVTLNCRYETSWTNYYIFWYKQ 37 (116)
T ss_pred CceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence 45677889999999997653 4567899973
No 320
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=91.41 E-value=0.57 Score=27.21 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=22.0
Q ss_pred eecCCeEEEEeeecCC--C-CCeEEEEeCCeee
Q psy16421 62 VREGSNVSMRCAASGS--P-PPSIMWRREGGEM 91 (151)
Q Consensus 62 ~~~g~~~~l~C~~~g~--~-~~~~~W~~~~~~~ 91 (151)
+..++.++|.|.+.|. | ...+.|+++++..
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~ 43 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEP 43 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEe
Confidence 3447899999999887 4 3467999954443
No 321
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=91.31 E-value=0.39 Score=28.19 Aligned_cols=27 Identities=22% Similarity=0.512 Sum_probs=21.0
Q ss_pred eecCCeEEEEeeecCCCCCeEEEEeCC
Q psy16421 62 VREGSNVSMRCAASGSPPPSIMWRREG 88 (151)
Q Consensus 62 ~~~g~~~~l~C~~~g~~~~~~~W~~~~ 88 (151)
+.+|++++|.|.........+.|++..
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~ 29 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQP 29 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeC
Confidence 567999999999865545679999844
No 322
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=91.29 E-value=0.32 Score=28.49 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=19.3
Q ss_pred cCCcEEEEeeecccC------CCeeEEEcC
Q psy16421 115 EGQQLVLECISEAYP------KSVNYWTRE 138 (151)
Q Consensus 115 ~g~~~~l~C~~~g~p------~~~~~W~k~ 138 (151)
.|+++.|.|.....+ ...+.|+|.
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~ 30 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKL 30 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEe
Confidence 489999999987653 457999986
No 323
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=91.10 E-value=0.45 Score=27.82 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=21.7
Q ss_pred eecCCcEEEEeeecc-cCC--CeeEEEcCC
Q psy16421 113 AHEGQQLVLECISEA-YPK--SVNYWTREK 139 (151)
Q Consensus 113 ~~~g~~~~l~C~~~g-~p~--~~~~W~k~~ 139 (151)
+.+|..+++.|.+.+ +|. ..+.|+|..
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~ 41 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGE 41 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCc
Confidence 478999999999985 665 459999853
No 324
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=91.01 E-value=0.65 Score=27.92 Aligned_cols=30 Identities=27% Similarity=0.585 Sum_probs=22.6
Q ss_pred CceEeecCCeEEEEeeecCCC--CCeEEEEeC
Q psy16421 58 SDIMVREGSNVSMRCAASGSP--PPSIMWRRE 87 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~--~~~~~W~~~ 87 (151)
....+.+|++++|.|...... ...+.|++.
T Consensus 5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ 36 (117)
T cd04981 5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQ 36 (117)
T ss_pred CCeEEcCCCCEEEEEEEeCCCcccceEEEEEE
Confidence 456778899999999875432 456899973
No 325
>PHA03052 Hypothetical protein; Provisional
Probab=90.98 E-value=1 Score=24.25 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=26.5
Q ss_pred ceeEeecCCcEEEEeeec-ccC--CCeeEEEcCCcee
Q psy16421 109 QLIGAHEGQQLVLECISE-AYP--KSVNYWTREKGDM 142 (151)
Q Consensus 109 ~~~~~~~g~~~~l~C~~~-g~p--~~~~~W~k~~~~~ 142 (151)
..+.+..|.++++.|.+. |.| .+.+.|.-|+...
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 556778899999999985 433 4569999987766
No 326
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=90.95 E-value=0.31 Score=28.66 Aligned_cols=29 Identities=21% Similarity=0.549 Sum_probs=21.5
Q ss_pred cCCeEEEEeeecC-CC-CCeEEEEeCCeeeEe
Q psy16421 64 EGSNVSMRCAASG-SP-PPSIMWRREGGEMIT 93 (151)
Q Consensus 64 ~g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~ 93 (151)
.++.+.|.|.+.| .| ...+.|++ +++.+.
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k-~g~~~~ 45 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQ-NGQPLS 45 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEE-CCEECC
Confidence 3678999999988 44 34679999 666543
No 327
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=90.61 E-value=0.95 Score=26.20 Aligned_cols=62 Identities=23% Similarity=0.498 Sum_probs=34.5
Q ss_pred CCeEEEEeeecC-CC-CCeEEEEeCCeeeEecccCCCCCCeee----e-CCceeEeecCC---cEEEEeeecccC
Q psy16421 65 GSNVSMRCAASG-SP-PPSIMWRREGGEMITNSFNNTVPPIVK----I-PSQLIGAHEGQ---QLVLECISEAYP 129 (151)
Q Consensus 65 g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~~~~~~~~~p~~~----~-~~~~~~~~~g~---~~~l~C~~~g~p 129 (151)
++.+.|.|.+.| .| ...+.|++ +++. .... ...+.... . ..+...+..++ ...++|.+....
T Consensus 16 ~~~~~L~C~a~gFyP~~i~vtW~k-~g~~-~~~~-~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 16 SDSVTLGCLATGFLPEPVTFTWNS-GSNS-TSGV-KTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCcEEEEEEEeeEECCCcEEEEeE-CCEE-CCCc-EECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 567899999988 44 45789999 6665 2211 11111111 0 01222344443 667999987643
No 328
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=90.51 E-value=0.4 Score=28.03 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=18.8
Q ss_pred cCCcEEEEeeecccC------CCeeEEEcC
Q psy16421 115 EGQQLVLECISEAYP------KSVNYWTRE 138 (151)
Q Consensus 115 ~g~~~~l~C~~~g~p------~~~~~W~k~ 138 (151)
.|+++.|.|.....| ...+.|+|.
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~ 30 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKL 30 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEe
Confidence 489999999987653 345999985
No 329
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=89.81 E-value=0.71 Score=26.68 Aligned_cols=27 Identities=22% Similarity=0.623 Sum_probs=20.7
Q ss_pred CCeEEEEeeecC-CC-CCeEEEEeCCeeeE
Q psy16421 65 GSNVSMRCAASG-SP-PPSIMWRREGGEMI 92 (151)
Q Consensus 65 g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~ 92 (151)
.+.+.|.|.+.| .| ...+.|++ +++.+
T Consensus 14 ~~~~~L~C~a~gFyP~~I~vtW~~-dg~~~ 42 (94)
T cd05847 14 SETIQLLCLISGYTPGTIEVEWLV-DGQVA 42 (94)
T ss_pred CCCEEEEEEEEeEECCCCEEEEEE-CCEEC
Confidence 466899999988 55 36789999 66654
No 330
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=89.21 E-value=0.37 Score=27.89 Aligned_cols=27 Identities=11% Similarity=0.041 Sum_probs=20.9
Q ss_pred ecCCcEEEEeeecc-cCCCeeEEEcCCc
Q psy16421 114 HEGQQLVLECISEA-YPKSVNYWTREKG 140 (151)
Q Consensus 114 ~~g~~~~l~C~~~g-~p~~~~~W~k~~~ 140 (151)
..|++|.|.|.... .....+.|+|...
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~ 29 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTS 29 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCE
Confidence 46999999998765 4455699998743
No 331
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=88.96 E-value=0.84 Score=26.53 Aligned_cols=29 Identities=38% Similarity=0.732 Sum_probs=23.9
Q ss_pred CceEeecCCeEEEEeeec-CCCCCeEEEEe
Q psy16421 58 SDIMVREGSNVSMRCAAS-GSPPPSIMWRR 86 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~-g~~~~~~~W~~ 86 (151)
..+.+.+|+++.|.|... ......+.|++
T Consensus 9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~ 38 (114)
T PF07686_consen 9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYR 38 (114)
T ss_dssp SEEEEETTSEEEEEEEEESSSSGSEEEEEE
T ss_pred CeEEEecCCCEEEEEEEeCCCCcceEEEEE
Confidence 457788999999999987 44567899998
No 332
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=88.94 E-value=1 Score=27.11 Aligned_cols=31 Identities=13% Similarity=0.309 Sum_probs=22.7
Q ss_pred CceeEeecCCcEEEEeeecccC------CCeeEEEcC
Q psy16421 108 SQLIGAHEGQQLVLECISEAYP------KSVNYWTRE 138 (151)
Q Consensus 108 ~~~~~~~~g~~~~l~C~~~g~p------~~~~~W~k~ 138 (151)
+..+.+.+|+++.|.|.....+ ...+.|+|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq 42 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKG 42 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeC
Confidence 5566789999999999864321 234999974
No 333
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=88.93 E-value=0.9 Score=32.68 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=17.7
Q ss_pred cEEEEeeecc-cCCCe-eEEEcC
Q psy16421 118 QLVLECISEA-YPKSV-NYWTRE 138 (151)
Q Consensus 118 ~~~l~C~~~g-~p~~~-~~W~k~ 138 (151)
.+.|+|.|.| +|... ++|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 6899999999 66544 999999
No 334
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=88.92 E-value=1 Score=27.11 Aligned_cols=31 Identities=13% Similarity=-0.056 Sum_probs=23.3
Q ss_pred CceeEeecCCcEEEEeeecccCCC---eeEEEcC
Q psy16421 108 SQLIGAHEGQQLVLECISEAYPKS---VNYWTRE 138 (151)
Q Consensus 108 ~~~~~~~~g~~~~l~C~~~g~p~~---~~~W~k~ 138 (151)
+....+..|..+.|+|.++|.-.. .+.|+|.
T Consensus 5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq 38 (115)
T cd05721 5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKG 38 (115)
T ss_pred cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEe
Confidence 445667889999999999875433 4889873
No 335
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=88.78 E-value=2.4 Score=25.51 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=22.5
Q ss_pred CceeEeecCCcEEEEeeeccc----CCCeeEEEc
Q psy16421 108 SQLIGAHEGQQLVLECISEAY----PKSVNYWTR 137 (151)
Q Consensus 108 ~~~~~~~~g~~~~l~C~~~g~----p~~~~~W~k 137 (151)
+..+.+..|+++.|.|..... +...+.|++
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~ 38 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHY 38 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEE
Confidence 445678899999999998653 234799943
No 336
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=88.65 E-value=0.96 Score=25.98 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=21.6
Q ss_pred eEeecCCeEEEEeeecC-CCCCeEEEEeC
Q psy16421 60 IMVREGSNVSMRCAASG-SPPPSIMWRRE 87 (151)
Q Consensus 60 ~~~~~g~~~~l~C~~~g-~~~~~~~W~~~ 87 (151)
+.+.+|+++.|.|.... .....+.|++.
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~ 30 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKW 30 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECC
Confidence 35678999999999754 34667899984
No 337
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=88.49 E-value=0.79 Score=25.54 Aligned_cols=62 Identities=18% Similarity=0.358 Sum_probs=35.2
Q ss_pred CCeEEEEeeecC-CCC-CeEEEEeCCeeeEecccCCC-----CCCeeeeCCceeEeecCCcEEEEeeeccc
Q psy16421 65 GSNVSMRCAASG-SPP-PSIMWRREGGEMITNSFNNT-----VPPIVKIPSQLIGAHEGQQLVLECISEAY 128 (151)
Q Consensus 65 g~~~~l~C~~~g-~~~-~~~~W~~~~~~~~~~~~~~~-----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~ 128 (151)
+..+.|.|.+.+ .|. ..+.|++ +++.+....... .--.+.. .+...+.......+.|.+...
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~-~~~~~~~~~~~~~~~~~~dgty~~-~s~l~v~~~~~~~ysC~V~H~ 76 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLK-NGKEVTEGVETTPPPPNSDGTYSV-TSSLTVTWNSGDEYSCRVTHE 76 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEE-TTEEETTTEEEEEEEEETTSEEEE-EEEEEEETTTTGGEEEEEEET
T ss_pred CCCEEEEEEEEEEECCCcEEEEEe-ccceeeeeeeecccccccccceee-eEEEEecCCCCCEEEEEEEEC
Confidence 789999999987 553 3689999 565544211000 0111111 122234456666888988654
No 338
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=88.21 E-value=1.2 Score=26.58 Aligned_cols=29 Identities=28% Similarity=0.580 Sum_probs=21.5
Q ss_pred CceEeecCCeEEEEeeecCCC----CCeEEEEe
Q psy16421 58 SDIMVREGSNVSMRCAASGSP----PPSIMWRR 86 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~----~~~~~W~~ 86 (151)
..+.+.+|+++.|.|...... ...+.|++
T Consensus 6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~ 38 (116)
T cd05715 6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSF 38 (116)
T ss_pred CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEE
Confidence 456778899999999875422 24689986
No 339
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=88.20 E-value=1.2 Score=26.73 Aligned_cols=29 Identities=24% Similarity=0.556 Sum_probs=21.6
Q ss_pred CceEeecCCeEEEEeeecCCC----CCeEEEEe
Q psy16421 58 SDIMVREGSNVSMRCAASGSP----PPSIMWRR 86 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~----~~~~~W~~ 86 (151)
..+.+.+|+++.|.|.....+ ...+.|++
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~ 38 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNF 38 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEE
Confidence 467788999999999964332 24689974
No 340
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=87.11 E-value=1.2 Score=25.93 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=21.0
Q ss_pred CCeEEEEeeecC-CC-CCeEEEEeCCeeeEe
Q psy16421 65 GSNVSMRCAASG-SP-PPSIMWRREGGEMIT 93 (151)
Q Consensus 65 g~~~~l~C~~~g-~~-~~~~~W~~~~~~~~~ 93 (151)
+..++|.|.+.| .| ...+.|++ +|+.+.
T Consensus 16 ~~~~tL~C~a~gFyP~~I~v~W~k-ng~~~~ 45 (96)
T cd07697 16 QGQGIYLCLLENFFPDVIQVHWRE-GNSPSI 45 (96)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEEE-CCEECc
Confidence 567899999988 55 45689999 666543
No 341
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=86.21 E-value=1.1 Score=25.86 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=17.2
Q ss_pred CCcEEEEeeecccCCC-eeEEEcC
Q psy16421 116 GQQLVLECISEAYPKS-VNYWTRE 138 (151)
Q Consensus 116 g~~~~l~C~~~g~p~~-~~~W~k~ 138 (151)
|+++.|.|........ .+.|+|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~ 24 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKI 24 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEc
Confidence 7899999986544333 5999984
No 342
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=86.01 E-value=1.3 Score=26.36 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=18.6
Q ss_pred cCCcEEEEeeecccC----------CCeeEEEcC
Q psy16421 115 EGQQLVLECISEAYP----------KSVNYWTRE 138 (151)
Q Consensus 115 ~g~~~~l~C~~~g~p----------~~~~~W~k~ 138 (151)
.|+++.|.|.....+ ...+.|+|.
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~ 34 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKL 34 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEe
Confidence 489999999987644 255999984
No 343
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=85.75 E-value=1 Score=33.06 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=22.9
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 33 (151)
+.+++.+|+|.|+|...-...+.-.+.+.+.|.
T Consensus 85 ~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVm 117 (500)
T PHA02914 85 EENIGEHEDGDFKCIFYLGDNESHKHEILVRKA 117 (500)
T ss_pred ecCcccccCCcEEEEEEeCCceeEEEEEEEEEc
Confidence 357899999999999876654344445555554
No 344
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=85.61 E-value=1.8 Score=24.75 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=36.2
Q ss_pred EeecCCeEEEEeeecC--CCCCeEEEEeCCeeeEecccCCCCCCeeeeCCceeEeecCCcEEEEeeecc
Q psy16421 61 MVREGSNVSMRCAASG--SPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEA 127 (151)
Q Consensus 61 ~~~~g~~~~l~C~~~g--~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g 127 (151)
.+..|+++.|.|.... .|.+.+.|...+++..... ......+... .+..-+...-+|.+.-
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~--~~~~ktL~~~----qv~~qdSG~WtC~V~~ 72 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQIL--NQDKKTLNLV----QLGPNDSGTWDCIVSV 72 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceec--cCCccEEEec----eeCcccCCEEEEEEEE
Confidence 4667999999999854 3355999997655433211 1222233222 2345566677887753
No 345
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=84.73 E-value=6.2 Score=23.37 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=38.2
Q ss_pred ceEeecCCeEEEEeeec-----------CCCCCeEEEEeCCeeeEecccCCCCC-CeeeeCCc---eeEeecCCcEEEEe
Q psy16421 59 DIMVREGSNVSMRCAAS-----------GSPPPSIMWRREGGEMITNSFNNTVP-PIVKIPSQ---LIGAHEGQQLVLEC 123 (151)
Q Consensus 59 ~~~~~~g~~~~l~C~~~-----------g~~~~~~~W~~~~~~~~~~~~~~~~~-p~~~~~~~---~~~~~~g~~~~l~C 123 (151)
...+.+|+.+.|.|... ......+.|+|+ +..+......... .++..... ...+...+.....|
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~-~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C 87 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKS-SGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTC 87 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEEC-CCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEE
Confidence 45677899999999961 112347899994 3222211100000 12222221 12355688889999
Q ss_pred eeccc
Q psy16421 124 ISEAY 128 (151)
Q Consensus 124 ~~~g~ 128 (151)
.+.+.
T Consensus 88 ~~rN~ 92 (104)
T cd05896 88 VLRNS 92 (104)
T ss_pred EECCC
Confidence 88753
No 346
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=84.64 E-value=1.1 Score=25.68 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=17.4
Q ss_pred CcEEEEeeecccC---CCeeEEEcCC
Q psy16421 117 QQLVLECISEAYP---KSVNYWTREK 139 (151)
Q Consensus 117 ~~~~l~C~~~g~p---~~~~~W~k~~ 139 (151)
+++.|.|.....+ ...+.|+|..
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~ 26 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKIT 26 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeEC
Confidence 4789999987654 3469999854
No 347
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=84.42 E-value=2.3 Score=25.50 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=21.9
Q ss_pred CceEeecCCeEEEEeeecCCC------CCeEEEEeCC
Q psy16421 58 SDIMVREGSNVSMRCAASGSP------PPSIMWRREG 88 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~~------~~~~~W~~~~ 88 (151)
..+.+.+|+.++|.|...... ...+.|++..
T Consensus 7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~ 43 (119)
T cd05712 7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGH 43 (119)
T ss_pred CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCC
Confidence 456778899999999754211 3458999843
No 348
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=84.41 E-value=1.5 Score=23.84 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=11.1
Q ss_pred ccccCCeEEEEEEEc
Q psy16421 4 VSREHMGAYLCIASN 18 (151)
Q Consensus 4 v~~~d~G~Y~C~~~~ 18 (151)
+..+-.|.|.|.+.+
T Consensus 40 ~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 40 RINDPRGTYSCKESE 54 (69)
T ss_pred cccCCCcceEecCcc
Confidence 344567999998866
No 349
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=84.37 E-value=1.8 Score=25.90 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=17.5
Q ss_pred CCeEEEEeeecCCC------------CCeEEEEeC
Q psy16421 65 GSNVSMRCAASGSP------------PPSIMWRRE 87 (151)
Q Consensus 65 g~~~~l~C~~~g~~------------~~~~~W~~~ 87 (151)
|++++|.|...... .+.+.|+|.
T Consensus 2 G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~ 36 (112)
T cd05900 2 GSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFI 36 (112)
T ss_pred CCcEEEeeEEeCCcCccccccccCCCCCEEEEEEe
Confidence 78999999865432 468999983
No 350
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=84.08 E-value=1.8 Score=25.23 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=18.3
Q ss_pred CCeEEEEeeecCC------CCCeEEEEeC
Q psy16421 65 GSNVSMRCAASGS------PPPSIMWRRE 87 (151)
Q Consensus 65 g~~~~l~C~~~g~------~~~~~~W~~~ 87 (151)
|+++.|.|..... ....+.|++.
T Consensus 2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~ 30 (106)
T cd05714 2 GGNVTLPCRFHLEPALSAPHGPRIKWTKL 30 (106)
T ss_pred CCCEEEeEEeECCcccCCCCCcEEEEEEe
Confidence 7899999997654 2568999984
No 351
>KOG1480|consensus
Probab=83.63 E-value=0.98 Score=35.94 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=26.1
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 33 (151)
|..+.+.|+|+|+|+|.|-++..++..+.+.+.
T Consensus 187 ~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy 219 (909)
T KOG1480|consen 187 ISQARLSDSGNYTCEATNIVAKRKSDPATVQVY 219 (909)
T ss_pred ccchhhhhcccceeeeehhhccccccceEEEEE
Confidence 356788999999999999998777666666554
No 352
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=83.01 E-value=1.9 Score=24.78 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=16.5
Q ss_pred CCcEEEEeeecccCC---CeeEEEcCC
Q psy16421 116 GQQLVLECISEAYPK---SVNYWTREK 139 (151)
Q Consensus 116 g~~~~l~C~~~g~p~---~~~~W~k~~ 139 (151)
|+++.|.|....... ..+.|+|..
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~ 27 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQ 27 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECC
Confidence 788999999753221 248888754
No 353
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=82.89 E-value=2.2 Score=25.23 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=21.1
Q ss_pred eEeecCCeEEEEeeecCCCCCeEEEEe
Q psy16421 60 IMVREGSNVSMRCAASGSPPPSIMWRR 86 (151)
Q Consensus 60 ~~~~~g~~~~l~C~~~g~~~~~~~W~~ 86 (151)
..+.+|+.+.|.|.........+.|+|
T Consensus 8 ~~~~~G~~V~L~v~~~p~~~~~~~W~k 34 (105)
T cd05774 8 PQVAEGENVLLLVHNLPENLLAYAWYK 34 (105)
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEc
Confidence 356789999999986544556899999
No 354
>PHA03271 envelope glycoprotein C; Provisional
Probab=82.08 E-value=7.7 Score=28.92 Aligned_cols=32 Identities=16% Similarity=0.387 Sum_probs=25.4
Q ss_pred eecCCcEEEEeeeccc-CCC--eeEEEcCCceecc
Q psy16421 113 AHEGQQLVLECISEAY-PKS--VNYWTREKGDMIA 144 (151)
Q Consensus 113 ~~~g~~~~l~C~~~g~-p~~--~~~W~k~~~~~~~ 144 (151)
+.+|+...-.|.+..+ |+- .+.|++||..+..
T Consensus 257 VL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~ 291 (490)
T PHA03271 257 VLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATP 291 (490)
T ss_pred cccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence 6899999999999874 443 3999999876643
No 355
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=81.74 E-value=9 Score=23.04 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=21.4
Q ss_pred CceEeecCCeEEEEeeecCC----CCCeEEEEe
Q psy16421 58 SDIMVREGSNVSMRCAASGS----PPPSIMWRR 86 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~g~----~~~~~~W~~ 86 (151)
..+.+..|+.+.|.|..... +...+.|.+
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~ 38 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHY 38 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEE
Confidence 35677789999999997553 245899944
No 356
>smart00406 IGv Immunoglobulin V-Type.
Probab=81.71 E-value=2.2 Score=23.04 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=16.0
Q ss_pred cEEEEeeecccCCC--eeEEEcCC
Q psy16421 118 QLVLECISEAYPKS--VNYWTREK 139 (151)
Q Consensus 118 ~~~l~C~~~g~p~~--~~~W~k~~ 139 (151)
++.|.|.+.....+ .+.|++..
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~ 24 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQP 24 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeC
Confidence 47899998765543 69999843
No 357
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=81.69 E-value=2.5 Score=24.57 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=18.2
Q ss_pred cCCeEEEEeeecCC------CCCeEEEEeC
Q psy16421 64 EGSNVSMRCAASGS------PPPSIMWRRE 87 (151)
Q Consensus 64 ~g~~~~l~C~~~g~------~~~~~~W~~~ 87 (151)
.|+.++|.|..... ....+.|++.
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~ 30 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKL 30 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEe
Confidence 37899999987554 2457999984
No 358
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=81.04 E-value=2.6 Score=24.42 Aligned_cols=22 Identities=27% Similarity=0.742 Sum_probs=17.8
Q ss_pred CeEEEEeee-cCCCCCeEEEEeC
Q psy16421 66 SNVSMRCAA-SGSPPPSIMWRRE 87 (151)
Q Consensus 66 ~~~~l~C~~-~g~~~~~~~W~~~ 87 (151)
....+.|.+ .|+|.+.+.|+++
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~ 38 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSST 38 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcC
Confidence 357789985 5799999999984
No 359
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=80.14 E-value=4 Score=23.59 Aligned_cols=22 Identities=27% Similarity=0.765 Sum_probs=18.1
Q ss_pred CeEEEEeee-cCCCCCeEEEEeC
Q psy16421 66 SNVSMRCAA-SGSPPPSIMWRRE 87 (151)
Q Consensus 66 ~~~~l~C~~-~g~~~~~~~W~~~ 87 (151)
......|.+ .|+|.+.+.|+++
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~ 38 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETT 38 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeC
Confidence 456778996 7799999999983
No 360
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=79.68 E-value=3.5 Score=24.46 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=17.8
Q ss_pred CCeEEEEeeecCCC----------CCeEEEEeC
Q psy16421 65 GSNVSMRCAASGSP----------PPSIMWRRE 87 (151)
Q Consensus 65 g~~~~l~C~~~g~~----------~~~~~W~~~ 87 (151)
|+++.|.|.....+ ...+.|++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~ 34 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKL 34 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEe
Confidence 78999999976533 367899984
No 361
>PHA03273 envelope glycoprotein C; Provisional
Probab=79.36 E-value=3.2 Score=31.16 Aligned_cols=43 Identities=16% Similarity=0.429 Sum_probs=32.2
Q ss_pred CCCCeeeeCCceeEeecCCcEEEEeeecc-cCCC--eeEEEcCCceec
Q psy16421 99 TVPPIVKIPSQLIGAHEGQQLVLECISEA-YPKS--VNYWTREKGDMI 143 (151)
Q Consensus 99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~--~~~W~k~~~~~~ 143 (151)
..+|.+.+.+. .+.+|+...-.|.+.. +|+- .+.|++||.++.
T Consensus 235 yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~ 280 (486)
T PHA03273 235 YNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVD 280 (486)
T ss_pred ecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCeecc
Confidence 45666665543 3689999999999887 4443 399999988776
No 362
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=78.92 E-value=9.5 Score=21.54 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=25.2
Q ss_pred CCCeeeeCCceeEee--cC--CcEEEEeeecccCCCeeEEEcCCcee
Q psy16421 100 VPPIVKIPSQLIGAH--EG--QQLVLECISEAYPKSVNYWTREKGDM 142 (151)
Q Consensus 100 ~~p~~~~~~~~~~~~--~g--~~~~l~C~~~g~p~~~~~W~k~~~~~ 142 (151)
.++.|..+.....+. .+ ....|...+.+. ...++|+-||..+
T Consensus 9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~ 54 (89)
T PF06832_consen 9 SPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPL 54 (89)
T ss_pred CCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEc
Confidence 345555554333222 22 356677777666 5599999997766
No 363
>PHA03269 envelope glycoprotein C; Provisional
Probab=78.77 E-value=3.1 Score=31.49 Aligned_cols=44 Identities=18% Similarity=0.344 Sum_probs=31.5
Q ss_pred CCCCeeeeCCceeEeecCCcEEEEeeecc-cCCC--eeEEEcCCceecc
Q psy16421 99 TVPPIVKIPSQLIGAHEGQQLVLECISEA-YPKS--VNYWTREKGDMIA 144 (151)
Q Consensus 99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~--~~~W~k~~~~~~~ 144 (151)
..+|.+.+.+. .+.+|+...-.|.+.. +|+- .+.|++||+++..
T Consensus 327 yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 327 YKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred ecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence 34555554433 3689999999999887 4443 3999999877753
No 364
>PHA03270 envelope glycoprotein C; Provisional
Probab=78.64 E-value=3.2 Score=30.87 Aligned_cols=43 Identities=19% Similarity=0.438 Sum_probs=31.3
Q ss_pred CCCCeeeeCCceeEeecCCcEEEEeeeccc-CCC--eeEEEcCCceec
Q psy16421 99 TVPPIVKIPSQLIGAHEGQQLVLECISEAY-PKS--VNYWTREKGDMI 143 (151)
Q Consensus 99 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~--~~~W~k~~~~~~ 143 (151)
..+|.+.+.+. .+.+|+...-.|.+..+ |+- .+.|++||..+.
T Consensus 219 yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~ 264 (466)
T PHA03270 219 FRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVF 264 (466)
T ss_pred ecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCcccc
Confidence 44566555443 36899999999998874 443 399999988764
No 365
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=77.75 E-value=1.5 Score=30.33 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=16.8
Q ss_pred CccccccCCeEEEEEEEcCC
Q psy16421 1 MTEVSREHMGAYLCIASNGV 20 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~ 20 (151)
+.+...+|+|.|+|...-..
T Consensus 41 ~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 41 FKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred eeccccccCCceEEEEEEEe
Confidence 46788999999999987665
No 366
>PHA03052 Hypothetical protein; Provisional
Probab=77.54 E-value=9.2 Score=20.68 Aligned_cols=36 Identities=22% Similarity=0.513 Sum_probs=24.7
Q ss_pred CceEeecCCeEEEEeeec-CC--CCCeEEEEeCCeeeEec
Q psy16421 58 SDIMVREGSNVSMRCAAS-GS--PPPSIMWRREGGEMITN 94 (151)
Q Consensus 58 ~~~~~~~g~~~~l~C~~~-g~--~~~~~~W~~~~~~~~~~ 94 (151)
..+.+..|..+.+.|++. |. ..+.+.|.- ++.....
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~-N~~~~e~ 43 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWIS-NGMYYEE 43 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEe-CCcEEec
Confidence 356677799999999963 32 245677777 6666643
No 367
>PHA03112 IL-18 binding protein; Provisional
Probab=76.28 E-value=4.5 Score=25.30 Aligned_cols=26 Identities=42% Similarity=0.801 Sum_probs=20.6
Q ss_pred ecCCcEEEEeeeccc-CC-CeeEEEcCC
Q psy16421 114 HEGQQLVLECISEAY-PK-SVNYWTREK 139 (151)
Q Consensus 114 ~~g~~~~l~C~~~g~-p~-~~~~W~k~~ 139 (151)
.+++.+.|+|.+-++ |. ..++|++++
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 569999999998865 65 459999654
No 368
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=74.61 E-value=6 Score=22.15 Aligned_cols=14 Identities=36% Similarity=0.731 Sum_probs=11.8
Q ss_pred ccccCCeEEEEEEE
Q psy16421 4 VSREHMGAYLCIAS 17 (151)
Q Consensus 4 v~~~d~G~Y~C~~~ 17 (151)
....|+|.+.|.|.
T Consensus 50 ~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 50 PTTEDSGTWVCTAS 63 (80)
T ss_dssp BTCGGSEEEEEEEE
T ss_pred CCCCCCEEEEEEEc
Confidence 34689999999995
No 369
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=74.60 E-value=4.7 Score=24.05 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=17.0
Q ss_pred CCcEEEEeeecccC-------CCeeEEEcC
Q psy16421 116 GQQLVLECISEAYP-------KSVNYWTRE 138 (151)
Q Consensus 116 g~~~~l~C~~~g~p-------~~~~~W~k~ 138 (151)
|.++.|.|...-.| .+.+.|.|-
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~ 31 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKL 31 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEe
Confidence 78899999965332 367999874
No 370
>PHA03042 CD47-like protein; Provisional
Probab=69.05 E-value=8 Score=27.07 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=18.0
Q ss_pred ccCCeEEEEEEEcCCCCCCccceEEEEe
Q psy16421 6 REHMGAYLCIASNGVPPSVSKRIMLIVQ 33 (151)
Q Consensus 6 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 33 (151)
.+-.|+|+|.|.+... ...+.+.|.-.
T Consensus 79 ~~l~GNYTCEv~~l~n-~gk~~IeLk~~ 105 (286)
T PHA03042 79 KNLSGNYTCEAINKFN-KIKNTIELQYV 105 (286)
T ss_pred ccCCCceeEEEeeccc-CccEEEEEEEE
Confidence 3447999999988766 34455555443
No 371
>KOG1480|consensus
Probab=65.82 E-value=2.2 Score=34.15 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=31.2
Q ss_pred eeeCCceeEeecCCcEEEEeee-cccCCCeeEEEcCCceecc
Q psy16421 104 VKIPSQLIGAHEGQQLVLECIS-EAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 104 ~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~k~~~~~~~ 144 (151)
+...+....+..+..+.+.|.. .+.|...+.|+|++..+.+
T Consensus 132 f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p 173 (909)
T KOG1480|consen 132 FEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP 173 (909)
T ss_pred hccChhhheecccccccccccCcccchhhhhhccccCCCCCc
Confidence 3444555667888889999884 6899999999999765554
No 372
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=64.28 E-value=8.7 Score=22.21 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=15.3
Q ss_pred cEEEEeeecccC---CCeeEEEcC
Q psy16421 118 QLVLECISEAYP---KSVNYWTRE 138 (151)
Q Consensus 118 ~~~l~C~~~g~p---~~~~~W~k~ 138 (151)
++.|.|.....+ ...+.|+|.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~ 25 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRE 25 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEc
Confidence 689999976443 346999983
No 373
>PHA03189 UL14 tegument protein; Provisional
Probab=63.78 E-value=8 Score=27.55 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=20.3
Q ss_pred cccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421 3 EVSREHMGAYLCIASNGVPPSVSKRIMLI 31 (151)
Q Consensus 3 ~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 31 (151)
++..+-+|.|.|+..|.........+.|.
T Consensus 139 ~v~t~taG~Y~CvLrN~tHglv~~rf~iv 167 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGLVLQRFVIV 167 (348)
T ss_pred EEEecccceEEEEeccccceeeeEEeeee
Confidence 34566789999999998775554444443
No 374
>COG5475 Uncharacterized small protein [Function unknown]
Probab=63.49 E-value=8.1 Score=19.95 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=11.8
Q ss_pred eEEEEEEEcCCCC
Q psy16421 10 GAYLCIASNGVPP 22 (151)
Q Consensus 10 G~Y~C~~~~~~~~ 22 (151)
|.|.|...+..|.
T Consensus 29 Gmy~C~Wf~g~g~ 41 (60)
T COG5475 29 GMYECRWFDGYGV 41 (60)
T ss_pred CeEEEEEecCCCc
Confidence 9999999999883
No 375
>PHA03286 envelope glycoprotein E; Provisional
Probab=62.82 E-value=67 Score=24.53 Aligned_cols=86 Identities=15% Similarity=0.105 Sum_probs=48.7
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEecc--ccceeEEeec---CCCCeeEeCCCCCceEeecCCeEEEEeeec
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQ--YFSKLYIYTS---SMPPDILDYPTSSDIMVREGSNVSMRCAAS 75 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~--~~~~~~~~~~---~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~ 75 (151)
|.+++.+++|.|+--..|+.+-.....+.++|..+ .+.+....-+ .....+.... ........|++..+.-...
T Consensus 131 I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~n-y~S~lF~~GDTF~vSv~l~ 209 (492)
T PHA03286 131 ILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKN-FKAFLYNVGDTVDASVTAH 209 (492)
T ss_pred EeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEec-ccceEecCCCeEEEEEEEe
Confidence 56889999999999998887756666677777433 1121111000 0112222222 1334445788887665543
Q ss_pred -----CCCCCeEEEEeC
Q psy16421 76 -----GSPPPSIMWRRE 87 (151)
Q Consensus 76 -----g~~~~~~~W~~~ 87 (151)
+.-...+.|+..
T Consensus 210 ~~~~d~~Fsl~i~W~y~ 226 (492)
T PHA03286 210 LTNWAGAFSLEFRVLFL 226 (492)
T ss_pred ecccCCCceEEEEEEEe
Confidence 112457899873
No 376
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=60.87 E-value=13 Score=21.75 Aligned_cols=21 Identities=33% Similarity=0.702 Sum_probs=16.2
Q ss_pred CcEEEEee-ecccCCCeeEEEc
Q psy16421 117 QQLVLECI-SEAYPKSVNYWTR 137 (151)
Q Consensus 117 ~~~~l~C~-~~g~p~~~~~W~k 137 (151)
..+.-.|. +.|.|++.|+|.-
T Consensus 21 ~v~VA~CiSa~GrPpa~ItW~t 42 (98)
T cd05890 21 KMLVATCVSANGKPPSVVRWDT 42 (98)
T ss_pred eEEEEEEEcCCCcCCcEeEEEc
Confidence 34556799 5789999999974
No 377
>PHA03283 envelope glycoprotein E; Provisional
Probab=58.25 E-value=82 Score=24.54 Aligned_cols=84 Identities=10% Similarity=0.040 Sum_probs=45.4
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEecccccee---EEee----cCCCCeeEeCCCCCceEeecCCeEEEEee
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKL---YIYT----SSMPPDILDYPTSSDIMVREGSNVSMRCA 73 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~---~~~~----~~~~p~~~~~~~~~~~~~~~g~~~~l~C~ 73 (151)
|.+++.+++|.|+--.+++.+ .....+.|.|......+. ..+. -.....|....- .......|++..+.-.
T Consensus 138 I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nY-hS~vf~~GDtf~lsi~ 215 (542)
T PHA03283 138 IQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGY-HSRVYSPGDSFDLSVH 215 (542)
T ss_pred EEecccccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecc-eeEEecCCCceeEeEE
Confidence 578999999999998888766 555556666643111100 0000 001122322221 2233457888877655
Q ss_pred ecCCC-----CCeEEEEe
Q psy16421 74 ASGSP-----PPSIMWRR 86 (151)
Q Consensus 74 ~~g~~-----~~~~~W~~ 86 (151)
..... ...+.|+.
T Consensus 216 l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 216 LESDIGDPSFSATIDWYY 233 (542)
T ss_pred EeeccCCCCceEEEEEEE
Confidence 43211 45789987
No 378
>KOG4597|consensus
Probab=56.68 E-value=7.2 Score=29.57 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=23.5
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|-+..+.|+|.|+|.+.++.| -....+.+.+
T Consensus 261 ic~ewq~~a~w~tCs~rcg~g-~~~rdv~c~s 291 (560)
T KOG4597|consen 261 ICNEWQADAGWYTCSARCGAG-FLRRDVPCSS 291 (560)
T ss_pred EcchhhcCCCceeeccccccc-eeeccceeee
Confidence 346778999999999999998 4445555554
No 379
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=54.41 E-value=2.1e+02 Score=27.62 Aligned_cols=118 Identities=15% Similarity=0.131 Sum_probs=66.6
Q ss_pred ccccCCeEEEEE--EEcCCCCCCccceEEEEeccccceeEEeecCCCC-eeEeCCCCCceEeecCCeEEEEeeecCCCCC
Q psy16421 4 VSREHMGAYLCI--ASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPP-DILDYPTSSDIMVREGSNVSMRCAASGSPPP 80 (151)
Q Consensus 4 v~~~d~G~Y~C~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~g~~~~l~C~~~g~~~~ 80 (151)
.+..+.|.|... |.|..+ .......+.|+ .+. .+.... ....+..|+.+.|.+....-...
T Consensus 1834 ~Tf~~aG~ytV~L~AsN~vs-~~~~s~~~~VQ-------------e~I~~L~L~a--s~~~~~~n~~v~fsa~l~~GS~V 1897 (2740)
T TIGR00864 1834 MTFPDAGTFAIRLNASNAVS-GKSASREFFAE-------------EPIFGLELKA--SKKIAAIGEKVEFQILLAAGSAV 1897 (2740)
T ss_pred EecCCCeEEEEEEEEEcccC-cceeeeeEEEE-------------EecceEEEec--ccccccCCCEEEEEEEecCCCce
Confidence 456788999665 677766 34444455553 222 222222 23456679999999986554578
Q ss_pred eEEEEeCCeeeEecccC--------------------C-----CCCCee---------eeCCcee-EeecCCcEEEEeee
Q psy16421 81 SIMWRREGGEMITNSFN--------------------N-----TVPPIV---------KIPSQLI-GAHEGQQLVLECIS 125 (151)
Q Consensus 81 ~~~W~~~~~~~~~~~~~--------------------~-----~~~p~~---------~~~~~~~-~~~~g~~~~l~C~~ 125 (151)
.+.|...|+.+...... + .....+ .+..... .+..|+...+.-.+
T Consensus 1898 tf~w~fGdgs~~~~t~~~t~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v 1977 (2740)
T TIGR00864 1898 NFRLQIGGAAPEVLQPGPRFSHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANV 1977 (2740)
T ss_pred EEEEEeCCCCceeecCCCeEEeecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEE
Confidence 88998755544332111 0 001111 1111111 25678999999998
Q ss_pred cccCCCeeEEEc
Q psy16421 126 EAYPKSVNYWTR 137 (151)
Q Consensus 126 ~g~p~~~~~W~k 137 (151)
+..-+..+.|+.
T Consensus 1978 ~~g~~V~f~W~f 1989 (2740)
T TIGR00864 1978 QRGKPVAFAWTF 1989 (2740)
T ss_pred ecCCceEEEEEe
Confidence 655556799973
No 380
>KOG0613|consensus
Probab=51.06 E-value=1.3e+02 Score=26.26 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=21.7
Q ss_pred eEeecCCeEEEEeeecCCCCCe-EEEEe
Q psy16421 60 IMVREGSNVSMRCAASGSPPPS-IMWRR 86 (151)
Q Consensus 60 ~~~~~g~~~~l~C~~~g~~~~~-~~W~~ 86 (151)
.....+..+.+.|...+...|. +.|+.
T Consensus 344 v~a~d~~~v~m~~~~~~~~~p~~~~~~~ 371 (1205)
T KOG0613|consen 344 VTARDNTLVEMPTALSGTQKPDEAQGYH 371 (1205)
T ss_pred eccccCcceeecccccCCcCCchheeec
Confidence 4455677899999999988776 88987
No 381
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=49.83 E-value=48 Score=18.92 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=21.1
Q ss_pred eeEeecCCcEEEEeeecc-----cCCCeeEEEcCCc
Q psy16421 110 LIGAHEGQQLVLECISEA-----YPKSVNYWTREKG 140 (151)
Q Consensus 110 ~~~~~~g~~~~l~C~~~g-----~p~~~~~W~k~~~ 140 (151)
...+..|.+++.+|...- .....+.|.-|+.
T Consensus 12 ~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~ 47 (89)
T PF06328_consen 12 SPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGE 47 (89)
T ss_dssp SSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSC
T ss_pred CCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCE
Confidence 345789999999999752 2445689988765
No 382
>KOG0613|consensus
Probab=48.95 E-value=33 Score=29.47 Aligned_cols=33 Identities=6% Similarity=-0.057 Sum_probs=27.9
Q ss_pred CceeEeecCCcEEEEeeecccCCCe-eEEEcCCc
Q psy16421 108 SQLIGAHEGQQLVLECISEAYPKSV-NYWTREKG 140 (151)
Q Consensus 108 ~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~k~~~ 140 (151)
...+....+..+.+.|...+.+.|. ++|++++.
T Consensus 341 ~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~ 374 (1205)
T KOG0613|consen 341 NLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEE 374 (1205)
T ss_pred cceeccccCcceeecccccCCcCCchheeecccc
Confidence 4556678899999999999999988 99999754
No 383
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=48.68 E-value=33 Score=20.77 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=16.0
Q ss_pred CCeEEEEeeecCCC-----------CCeEEEEeC
Q psy16421 65 GSNVSMRCAASGSP-----------PPSIMWRRE 87 (151)
Q Consensus 65 g~~~~l~C~~~g~~-----------~~~~~W~~~ 87 (151)
|.++.|.|.....| ...+.|++.
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~ 35 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKI 35 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEe
Confidence 57789999876433 237899873
No 384
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=42.40 E-value=8.3 Score=29.11 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=0.0
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEec
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQC 34 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 34 (151)
|.+++++|+|.|+-..++..+......+.|.|..
T Consensus 93 i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 93 ILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp ----------------------------------
T ss_pred EeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 5789999999999998887765555566666653
No 385
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=39.57 E-value=37 Score=21.08 Aligned_cols=33 Identities=12% Similarity=0.257 Sum_probs=19.8
Q ss_pred EeecCCcEEEEeeecc---c--CCCeeEEEcCCceecc
Q psy16421 112 GAHEGQQLVLECISEA---Y--PKSVNYWTREKGDMIA 144 (151)
Q Consensus 112 ~~~~g~~~~l~C~~~g---~--p~~~~~W~k~~~~~~~ 144 (151)
...=.+++.|.|.+.. . +.-.+.|..+|..+..
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~ 60 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFI 60 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEE
Confidence 3445889999999865 1 2234999988776643
No 386
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=38.72 E-value=3.8e+02 Score=26.12 Aligned_cols=29 Identities=10% Similarity=-0.117 Sum_probs=23.0
Q ss_pred eeEeecCCcEEEEeeecccCCCeeEEEcC
Q psy16421 110 LIGAHEGQQLVLECISEAYPKSVNYWTRE 138 (151)
Q Consensus 110 ~~~~~~g~~~~l~C~~~g~p~~~~~W~k~ 138 (151)
...+..|+.+.|++.....+...+.|...
T Consensus 1876 ~~~~~~n~~v~fsa~l~~GS~Vtf~w~fG 1904 (2740)
T TIGR00864 1876 KKIAAIGEKVEFQILLAAGSAVNFRLQIG 1904 (2740)
T ss_pred cccccCCCEEEEEEEecCCCceEEEEEeC
Confidence 33467899999999988777888999654
No 387
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=38.50 E-value=27 Score=17.81 Aligned_cols=17 Identities=18% Similarity=0.468 Sum_probs=13.3
Q ss_pred ccCCeEEEEEEEcCCCC
Q psy16421 6 REHMGAYLCIASNGVPP 22 (151)
Q Consensus 6 ~~d~G~Y~C~~~~~~~~ 22 (151)
.+.+..|.|.++|..|.
T Consensus 7 kdssnsflctvqnkng~ 23 (65)
T PF13220_consen 7 KDSSNSFLCTVQNKNGD 23 (65)
T ss_pred ecCCCceEEEEecccHh
Confidence 34456899999999884
No 388
>PHA03292 envelope glycoprotein I; Provisional
Probab=37.37 E-value=68 Score=23.84 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=22.1
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+...+|+|.|.-++.-... ...+-+.|.+
T Consensus 132 I~~P~~~DSGiY~LRV~Ldga-~~aDvF~lsv 162 (413)
T PHA03292 132 ITGPQPADSGAYILRVKLDHA-PTADVFGLSA 162 (413)
T ss_pred eCCCCcccceeEEEEEEeCCC-ccCceeEEEE
Confidence 567789999999999887755 4445554443
No 389
>PHA03289 envelope glycoprotein I; Provisional
Probab=36.84 E-value=76 Score=23.03 Aligned_cols=31 Identities=19% Similarity=0.073 Sum_probs=22.0
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+...+|+|.|.-++.-... ...+-+.+.+
T Consensus 126 I~~Pr~~DSGiYyLRV~Ldga-~~sDvF~lsv 156 (352)
T PHA03289 126 IIEPRMSDTGIYYIRVSLAGR-NKSDIFRTSV 156 (352)
T ss_pred eCCCCcccCeeEEEEEEeCCC-ccCceEEEEE
Confidence 467789999999999887755 4445444443
No 390
>PHA03290 envelope glycoprotein I; Provisional
Probab=36.32 E-value=77 Score=23.14 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=21.9
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 32 (151)
|.+...+|+|.|.-+++-... ...+-+.+.+
T Consensus 133 I~~P~~~DSGiY~LRV~Ldga-~~sDvF~lsv 163 (357)
T PHA03290 133 INKPGIEDAGIYLLLVQLDHS-RLFDGFFLGL 163 (357)
T ss_pred eCCCCcccCeeEEEEEEeCCC-cccceEEEEE
Confidence 467789999999999887654 4445444443
No 391
>PF15096 G6B: G6B family
Probab=36.14 E-value=27 Score=23.10 Aligned_cols=15 Identities=20% Similarity=0.585 Sum_probs=11.7
Q ss_pred ccccCCeEEEEEEEc
Q psy16421 4 VSREHMGAYLCIASN 18 (151)
Q Consensus 4 v~~~d~G~Y~C~~~~ 18 (151)
++..|+|+|.|+.+.
T Consensus 81 Ls~GDSGTFfCkGr~ 95 (224)
T PF15096_consen 81 LSAGDSGTFFCKGRQ 95 (224)
T ss_pred hhcCCccceEecCcc
Confidence 356899999998544
No 392
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=30.67 E-value=1.1e+02 Score=17.61 Aligned_cols=33 Identities=9% Similarity=0.084 Sum_probs=22.5
Q ss_pred eeeCCceeEeecCCcEEEEeeecccCCCeeEEE
Q psy16421 104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWT 136 (151)
Q Consensus 104 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~ 136 (151)
+.+.+....+..|+.+.+.|.....-+..+.|.
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLE 38 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLE 38 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEESSSS-SEEEEE
T ss_pred EEEECCccEECCCCCEEEEEcCCCCCCCcceEE
Confidence 345566777899999999999865322235553
No 393
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=30.17 E-value=27 Score=16.23 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=8.3
Q ss_pred cccCCeEEEEE
Q psy16421 5 SREHMGAYLCI 15 (151)
Q Consensus 5 ~~~d~G~Y~C~ 15 (151)
-..|.|.|.|.
T Consensus 19 ~~~~dG~~yC~ 29 (36)
T PF11781_consen 19 FYSDDGFYYCD 29 (36)
T ss_pred eEccCCEEEhh
Confidence 35678999994
No 394
>PHA02982 hypothetical protein; Provisional
Probab=26.66 E-value=61 Score=22.08 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=17.3
Q ss_pred CccccccCCeEEEEEEEcCCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVP 21 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~ 21 (151)
|+++..+..|-|+|++..+.+
T Consensus 104 Ikk~~i~N~GCYtc~~ks~~~ 124 (251)
T PHA02982 104 MKKPDPQNLGCFTCEAKDAEG 124 (251)
T ss_pred eccCCcccCCceEEEEecCCC
Confidence 567788889999999988655
No 395
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=25.50 E-value=55 Score=17.66 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=14.4
Q ss_pred EEEeeecccCCCeeEEEcCCceecc
Q psy16421 120 VLECISEAYPKSVNYWTREKGDMIA 144 (151)
Q Consensus 120 ~l~C~~~g~p~~~~~W~k~~~~~~~ 144 (151)
.|+|.... ..-++|+-||.+++.
T Consensus 2 tltC~s~~--sLPiswYcN~TRLlR 24 (71)
T PF11049_consen 2 TLTCPSNA--SLPISWYCNGTRLLR 24 (71)
T ss_pred ceecCCCC--CCcccEEECCceeee
Confidence 45665432 234788888877754
No 396
>KOG4597|consensus
Probab=24.77 E-value=41 Score=25.83 Aligned_cols=29 Identities=7% Similarity=-0.135 Sum_probs=24.9
Q ss_pred ceeEeecCCcEEEEeeecccCCCeeEEEc
Q psy16421 109 QLIGAHEGQQLVLECISEAYPKSVNYWTR 137 (151)
Q Consensus 109 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~k 137 (151)
.--.+..|++..++|-++|.|.+.|+|-+
T Consensus 204 a~w~vg~wetcS~tCg~~G~q~r~V~c~q 232 (560)
T KOG4597|consen 204 AEWFVGDWETCSSTCGVQGRQYRVVTCEQ 232 (560)
T ss_pred chhhcccchhhcccccccCCcCceeeeeh
Confidence 33457789999999999999999999965
No 397
>KOG1026|consensus
Probab=23.83 E-value=81 Score=25.93 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=27.3
Q ss_pred eeEeecCCcEEEEeeecccCCCeeEEEcCCce
Q psy16421 110 LIGAHEGQQLVLECISEAYPKSVNYWTREKGD 141 (151)
Q Consensus 110 ~~~~~~g~~~~l~C~~~g~p~~~~~W~k~~~~ 141 (151)
...+..|..+.+.|.+.+.|.|.+.|+.++..
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~ 232 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLA 232 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeeccccc
Confidence 34577899999999999999999999987543
No 398
>PHA03291 envelope glycoprotein I; Provisional
Probab=22.34 E-value=1.8e+02 Score=21.59 Aligned_cols=30 Identities=13% Similarity=0.026 Sum_probs=20.7
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEE
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI 31 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 31 (151)
|.+...+|+|.|.-++.-... ...+.+.|.
T Consensus 133 i~~P~~~DsGiYvLRV~vdga-t~adlF~lg 162 (401)
T PHA03291 133 ARGAARAVVGLYVLRVWVEGA-TNASLFPLG 162 (401)
T ss_pred ecCCCcccceeEEEEEEeCCC-cccceEEEe
Confidence 467789999999999877654 333444443
No 399
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=22.21 E-value=70 Score=19.37 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=15.3
Q ss_pred CccccccCCeEEEEEEEcCCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVP 21 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~ 21 (151)
|..+.+.+.|-|.....+..|
T Consensus 13 I~~I~~~ekgg~~vtI~~~dG 33 (118)
T PF01333_consen 13 ITKITRKEKGGYEVTIETSDG 33 (118)
T ss_dssp EEEEEEETTSEEEEEEETTTS
T ss_pred EEEEEEcCCCCEEEEEECCCC
Confidence 345677788888888877665
No 400
>PF09085 Adhes-Ig_like: Adhesion molecule, immunoglobulin-like; InterPro: IPR015169 This domain is found in mucosal vascular addressin cell adhesion molecule 1 proteins (MAdCAM-1). These are cell adhesion molecules expressed on the endothelium in mucosa that guide the specific homing of lymphocytes into mucosal tissues. MAdCAM-1 belongs to a subclass of the immunoglobulin superfamily (IgSF), the members of which are ligands for integrins []. The crystal structure of this domain has been reported; it adopts an immunoglobulin-like beta-sandwich structure, with seven strands arranged in two beta-sheets in a Greek-key topology [, ].; GO: 0007155 cell adhesion, 0016020 membrane; PDB: 1GSM_A 1BQS_A.
Probab=21.76 E-value=1.9e+02 Score=17.07 Aligned_cols=38 Identities=8% Similarity=0.169 Sum_probs=22.0
Q ss_pred eeeeCCceeEeecCCcEEEEeeecc----cCC-CeeEEEcCCcee
Q psy16421 103 IVKIPSQLIGAHEGQQLVLECISEA----YPK-SVNYWTREKGDM 142 (151)
Q Consensus 103 ~~~~~~~~~~~~~g~~~~l~C~~~g----~p~-~~~~W~k~~~~~ 142 (151)
.+.+.+. .+..|.+.++.|.+.. .|. -++.|+..++.+
T Consensus 5 qLtVSP~--~LVpg~dqevaCTAhnVtP~~p~~LSfslllGdqeL 47 (110)
T PF09085_consen 5 QLTVSPE--ALVPGRDQEVACTAHNVTPADPDALSFSLLLGDQEL 47 (110)
T ss_dssp EEEEESS--SB-TT--SEEEEEEEEEB--STTTEEEEEEETTEE-
T ss_pred ceeEChh--HhccCCCceeeeeeccccCCCCCeEEeeeeeCceee
Confidence 4444443 3678999999999864 232 249999876554
No 401
>PHA03281 envelope glycoprotein E; Provisional
Probab=21.35 E-value=4.3e+02 Score=21.11 Aligned_cols=85 Identities=11% Similarity=0.134 Sum_probs=41.1
Q ss_pred CccccccCCeEEEEEEEcCCCCCCccceEEEEeccccce--eEEeecC-CCCeeEeCCCCCceEeecCCeEEEEeeecCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSK--LYIYTSS-MPPDILDYPTSSDIMVREGSNVSMRCAASGS 77 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~--~~~~~~~-~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~ 77 (151)
|.+++..++|.|+--.+...|......+.+.|..+.... ....... ..+.|....- .......|++..+.-.....
T Consensus 302 I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknY-hShVF~pGDTFsl~v~L~s~ 380 (642)
T PHA03281 302 FEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHY-HSHVFSVGDTFSLAMHLQYK 380 (642)
T ss_pred EEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEecc-ceeEecCCCeeEEEEEEeee
Confidence 568899999999977765545222224455553211000 0000000 0112222221 22233468887776554322
Q ss_pred ----C-CCeEEEEe
Q psy16421 78 ----P-PPSIMWRR 86 (151)
Q Consensus 78 ----~-~~~~~W~~ 86 (151)
+ ...+.|+.
T Consensus 381 ihD~pFsleI~Wyy 394 (642)
T PHA03281 381 IHDAPFDLLLEWLY 394 (642)
T ss_pred ccCCCceeEEEEEE
Confidence 2 45789986
No 402
>PHA03282 envelope glycoprotein E; Provisional
Probab=21.06 E-value=1.1e+02 Score=23.53 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=17.1
Q ss_pred CccccccCCeEEEEEEEcCCC
Q psy16421 1 MTEVSREHMGAYLCIASNGVP 21 (151)
Q Consensus 1 i~~v~~~d~G~Y~C~~~~~~~ 21 (151)
+.|+..+++|.|-|++.-...
T Consensus 337 F~nAp~saSGLYVfVl~yNGH 357 (540)
T PHA03282 337 LRDASEASGGLYVCVVYVNGH 357 (540)
T ss_pred ecCCCcccCceEEEEEEECCe
Confidence 468889999999999876544
No 403
>PRK01242 rpl39e 50S ribosomal protein L39e; Validated
Probab=20.34 E-value=1.4e+02 Score=15.13 Aligned_cols=23 Identities=4% Similarity=-0.080 Sum_probs=16.4
Q ss_pred cccCCCeeEEEcCCceeccCCCC
Q psy16421 126 EAYPKSVNYWTREKGDMIANGKT 148 (151)
Q Consensus 126 ~g~p~~~~~W~k~~~~~~~~~~~ 148 (151)
+..|.|.+.++|-+..+..+...
T Consensus 18 QNrpvP~Wv~~KT~~kvr~n~kR 40 (50)
T PRK01242 18 QNRRVPAWVIVKTNRRVRRHPKR 40 (50)
T ss_pred ccCCCCeEEEEEcCCceecCCcc
Confidence 35688888888887777665543
Done!