RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16421
(151 letters)
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 97.3 bits (242), Expect = 2e-25
Identities = 28/190 (14%), Positives = 59/190 (31%), Gaps = 61/190 (32%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ + G Y C+ + + + + ++ +
Sbjct: 67 YNANIDDAGIYKCVVTAEDGTQSEATVNVKI---------------FQKLMFKNAPTPQE 111
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN----------------------- 98
+EG + + C S PP+I+W+ +G ++I
Sbjct: 112 FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYR 171
Query: 99 --------------------TVPPIVKIPSQLIG--AHEGQQLVLECISEAYPKSVNYWT 136
VPP V+ ++ A+ GQ + L C ++ +P+ WT
Sbjct: 172 CEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWT 231
Query: 137 REKGDMIANG 146
++ G+ I N
Sbjct: 232 KD-GEPIENE 240
Score = 86.9 bits (215), Expect = 2e-21
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 14/99 (14%)
Query: 2 TEVSREHMGAYLCIASNGVPPSV-SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ + G Y C + K I +IV +PP + + +
Sbjct: 160 RGIKKTDEGTYRCEGRILARGEINFKDIQVIVN-------------VPPTVQARQSIVNA 206
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT 99
G +V++ C A G P P++ W ++G + ++
Sbjct: 207 TANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDE 245
Score = 52.2 bits (125), Expect = 5e-09
Identities = 18/141 (12%), Positives = 28/141 (19%), Gaps = 47/141 (33%)
Query: 58 SDIMVREGSNVSMRCAASGSPP-PSIMWRREGGEMI------------------------ 92
S + G + C +G I W GE +
Sbjct: 10 SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA 69
Query: 93 ------------TNSFNNT----------VPPIVKIPSQLIGAHEGQQLVLECISEAYPK 130
T + K EG+ V+ C +
Sbjct: 70 NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLP 129
Query: 131 SVNYWTREKGDMIANGKTPFQ 151
W + D+I F
Sbjct: 130 PTIIWKHKGRDVILKKDVRFI 150
Score = 30.6 bits (69), Expect = 0.17
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY-WTREKGDMI 143
V + +PSQ G+ C K + W G+ +
Sbjct: 2 VLQVDIVPSQGE-ISVGESKFFLCQVAGDAKDKDISWFSPNGEKL 45
Score = 28.3 bits (63), Expect = 0.91
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
V + Y+CIA N G I L V
Sbjct: 259 RNVDKNDEAEYVCIAENKAG---EQDASIHLKVF 289
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 74.9 bits (184), Expect = 9e-18
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 15/94 (15%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ + G Y C+ + + + + + PT
Sbjct: 67 YNANIDDAGIYKCVVTAEDGTQSEATVNVKIF-------------QKLMFKNAPT--PQE 111
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+EG + + C S PP+I+W+ +G ++I
Sbjct: 112 FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKK 145
Score = 53.3 bits (128), Expect = 1e-09
Identities = 19/151 (12%), Positives = 32/151 (21%), Gaps = 49/151 (32%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPP-PSIMWRREGGEMITNS----------- 95
+ P S + G + C +G I W GE ++ +
Sbjct: 2 VLQVDIVP--SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59
Query: 96 ------FNNT-----------------------------VPPIVKIPSQLIGAHEGQQLV 120
N + K EG+ V
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAV 119
Query: 121 LECISEAYPKSVNYWTREKGDMIANGKTPFQ 151
+ C + W + D+I F
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFI 150
Score = 26.3 bits (58), Expect = 3.4
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSV-SKRIMLIV 32
+ + G Y C + K I +IV
Sbjct: 160 RGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 75.1 bits (184), Expect = 1e-17
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 16/97 (16%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
T + H G YLC G V+K+ L V P + +
Sbjct: 72 TAANISHDGNYLCRMKLGET-EVTKQEHLSVV-------------KPLTLSVHS--ERSQ 115
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN 98
+ S +++ C + P P + W G + N
Sbjct: 116 FPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAAN 152
Score = 38.9 bits (90), Expect = 2e-04
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144
P + + S+ + L + C A+P W +G A
Sbjct: 103 KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPA 147
Score = 26.9 bits (59), Expect = 2.5
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 60 IMVREGSNVSMRCAA---SGSPPPSIMWRREG 88
+ G V++ S P + W + G
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLG 32
Score = 25.4 bits (55), Expect = 8.8
Identities = 2/19 (10%), Positives = 5/19 (26%)
Query: 2 TEVSREHMGAYLCIASNGV 20
+ + C+ N
Sbjct: 169 LSLPKPWHLPVTCVGKNDK 187
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 74.0 bits (182), Expect = 2e-17
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 15/94 (15%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
V G Y C A+NGV +V L V+ M P I P ++
Sbjct: 67 LSVEDSDDGIYCCTANNGVGGAVESCGALQVK-------------MKPKITRPP--INVK 111
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ EG + C G+P PS+ W + + NS
Sbjct: 112 IIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENS 145
Score = 62.1 bits (151), Expect = 7e-13
Identities = 22/141 (15%), Positives = 32/141 (22%), Gaps = 44/141 (31%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG------------------- 88
P I + + CA P P I W R
Sbjct: 7 APVITTPL--ETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLL 64
Query: 89 ---------------------GEMITNSFNNTV--PPIVKIPSQLIGAHEGQQLVLECIS 125
G + + V P + P + EG + VL C +
Sbjct: 65 TILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTT 124
Query: 126 EAYPKSVNYWTREKGDMIANG 146
PK W + + N
Sbjct: 125 MGNPKPSVSWIKGDSALRENS 145
Score = 31.6 bits (72), Expect = 0.059
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
V +E G Y C+A N + + SK + L V+
Sbjct: 158 HNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 74.2 bits (182), Expect = 3e-17
Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 17/96 (17%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSK-RIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
V+RE G Y C+ S S + ++ LIV +PP
Sbjct: 73 KSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL-------------VPPSKPTVN--IPS 117
Query: 61 MVREGSNVSMRC-AASGSPPPSIMWRREGGEMITNS 95
G+ + C GSPP W ++G M TN
Sbjct: 118 SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNP 153
Score = 71.5 bits (175), Expect = 2e-16
Identities = 24/157 (15%), Positives = 42/157 (26%), Gaps = 53/157 (33%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT-------- 99
+ + + ++ + E + V + CA SG P + W+ + G+ N
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 100 --------------------------------------------VPPIVKIPSQLIGAHE 115
VPP + A
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI 121
Query: 116 GQQLVLECI-SEAYPKSVNYWTREKGDMIANGKTPFQ 151
G + VL C + P S W ++ M N K+
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRA 158
Score = 31.9 bits (72), Expect = 0.048
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+S G Y C A NG + + ++
Sbjct: 176 DPLSASDTGEYSCEARNGY-GTPMTSNAVRME 206
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 75.2 bits (185), Expect = 3e-17
Identities = 33/188 (17%), Positives = 59/188 (31%), Gaps = 57/188 (30%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+V++ G Y C ASN S L VQ PP + S +
Sbjct: 66 LKVTKGDAGQYTCYASNVAG-KDSCSAQLGVQ-------------EPPRFIKKLEPS-RI 110
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEM------------------ITNSF------- 96
V++ + C GSP ++W ++ E+ + N
Sbjct: 111 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170
Query: 97 ----NNT-------------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREK 139
+N PP+ + + +G + LEC + P W ++K
Sbjct: 171 TCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDK 230
Query: 140 GDMIANGK 147
++ + K
Sbjct: 231 RELRSGKK 238
Score = 59.8 bits (145), Expect = 1e-11
Identities = 18/143 (12%), Positives = 38/143 (26%), Gaps = 45/143 (31%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGE----------------- 90
PP P + + G + + +C +G+ P I W ++ E
Sbjct: 5 PPFFDLKP--VSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 91 ----------------MITNSFN----------NTVPPIVKIPSQLIGAHEGQQLVLECI 124
+N P +K + + EC
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 122
Query: 125 SEAYPKSVNYWTREKGDMIANGK 147
P+ W +++ ++ + K
Sbjct: 123 IGGSPEIKVLWYKDETEIQESSK 145
Score = 31.2 bits (71), Expect = 0.11
Identities = 5/39 (12%), Positives = 11/39 (28%)
Query: 100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTRE 138
PP + + G+ +C W ++
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKD 42
Score = 30.9 bits (70), Expect = 0.13
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
V +G Y C ASN G S + + ++
Sbjct: 253 LNVDSADIGEYQCKASNDVG---SYTCVGSITLK 283
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 76.1 bits (187), Expect = 3e-17
Identities = 29/172 (16%), Positives = 47/172 (27%), Gaps = 49/172 (28%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
V+R +G Y C N + S ++L V P D P S R
Sbjct: 349 VTRNDVGPYECGIQNELSVDHSDPVILNVL------------YGPDDPTISP--SYTYYR 394
Query: 64 EGSNVSMRCAASGSPPPSIMWRREGGEMITNS---FNNT--------------------- 99
G N+S+ C A+ +PP W +G +N
Sbjct: 395 PGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSR 454
Query: 100 -----------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKG 140
+P + + + C EA + +W +
Sbjct: 455 TTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQS 506
Score = 69.6 bits (170), Expect = 7e-15
Identities = 26/174 (14%), Positives = 43/174 (24%), Gaps = 49/174 (28%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
V+R +Y C N V S ++L V P P +
Sbjct: 169 FNVTRNDTASYKCETQNPVSARRSDSVILNVL------------YGPDAPTISP--LNTS 214
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS---FNNT------------------- 99
R G N+++ C A+ +PP W G + N
Sbjct: 215 YRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGL 274
Query: 100 -------------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKG 140
P + + + L C E + +W +
Sbjct: 275 NRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQS 328
Score = 65.7 bits (160), Expect = 2e-13
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 14/87 (16%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
V+R AY+C N V + S + L V P + P D
Sbjct: 525 FNVTRNDARAYVCGIQNSVSANRSDPVTLDVL------------YGPDTPIISP--PDSS 570
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREG 88
G+N+++ C ++ +P P WR G
Sbjct: 571 YLSGANLNLSCHSASNPSPQYSWRING 597
Score = 55.7 bits (134), Expect = 4e-10
Identities = 22/188 (11%), Positives = 46/188 (24%), Gaps = 58/188 (30%)
Query: 4 VSREHMGAYLCIASNGV-PPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMV 62
++ + G+Y C A N + + + V P +++ V
Sbjct: 255 ITVNNSGSYTCQAHNSDTGLNRTTVTTITVYA-------------EPPKPFITSNNSNPV 301
Query: 63 REGSNVSMRCAASGSPPPSIMWRREGGEMITNS------FNNT----------------- 99
+ V++ C +W + + N T
Sbjct: 302 EDEDAVALTCEPEIQNTT-YLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECG 360
Query: 100 -------------------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKG 140
P I G L L C + + P + W + G
Sbjct: 361 IQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID-G 419
Query: 141 DMIANGKT 148
++ + +
Sbjct: 420 NIQQHTQE 427
Score = 54.6 bits (131), Expect = 1e-09
Identities = 18/177 (10%), Positives = 32/177 (18%), Gaps = 54/177 (30%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ + G Y + V P ++
Sbjct: 76 QNIIQNDTGFYTLHVIKSDLVNEEATGQFRVY------------PELPKPSISS-NNSKP 122
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREG--------------------------------- 88
V + V+ C + W
Sbjct: 123 VEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCE 182
Query: 89 -----GEMITNSFNNTV---PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR 137
++S V P I G+ L L C + + P + W
Sbjct: 183 TQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFV 239
Score = 54.2 bits (130), Expect = 2e-09
Identities = 24/189 (12%), Positives = 44/189 (23%), Gaps = 56/189 (29%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ ++ ++ G Y C A+N S+ + + T S +++
Sbjct: 431 SNITEKNSGLYTCQANNSAS-GHSRTTVKTI-----------TVSAELPKPSISSNNSKP 478
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREG--------------------------------- 88
V + V+ C +W G
Sbjct: 479 VEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVC 537
Query: 89 ------GEMITNSFNNTV---PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREK 139
++ V P I G L L C S + P W
Sbjct: 538 GIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRIN- 596
Query: 140 GDMIANGKT 148
G + +
Sbjct: 597 GIPQQHTQV 605
Score = 38.4 bits (89), Expect = 5e-04
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 56 TSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHE 115
S+ V EG V + W + GE + + I + A+
Sbjct: 5 ESTPFNVAEGKEVLLLVHNLPQHLFGYSWYK--GERVDGNRQIIGYVIGTQQATPGPAYS 62
Query: 116 GQQLVL 121
G++++
Sbjct: 63 GREIIY 68
Score = 30.3 bits (68), Expect = 0.21
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+++ + G Y C SN + I+ +
Sbjct: 609 AKITPNNNGTYACFVSNLA-TGRNNSIVKSIT 639
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 73.7 bits (181), Expect = 1e-16
Identities = 29/191 (15%), Positives = 52/191 (27%), Gaps = 60/191 (31%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ E G Y C A++ + ++L + + S
Sbjct: 65 YNANIEDAGIYRCQATDAKGQTQEATVVLEIY-------------QKLTFREVV--SPQE 109
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREG--------------------------------- 88
++G + + C S SP P++ W
Sbjct: 110 FKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYR 169
Query: 89 --------GEMITNSFNNTV--PPIVKIP--SQLIGAHEGQQLVLECISEAYPKSVNYWT 136
GE+ V PP + +P S A G+++ C + P+ W
Sbjct: 170 CEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWF 229
Query: 137 REKGDMIANGK 147
R + N K
Sbjct: 230 RNGKLIEENEK 240
Score = 48.7 bits (116), Expect = 1e-07
Identities = 19/151 (12%), Positives = 32/151 (21%), Gaps = 47/151 (31%)
Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMI------------ 92
S + S + + G + C A G P I W GE I
Sbjct: 1 SMALLQVTISL--SKVELSVGESKFFTCTAIGEPES-IDWYNPQGEKIISTQRVVVQKEG 57
Query: 93 ----------------------TNSFNNT----------VPPIVKIPSQLIGAHEGQQLV 120
T++ T + +G+
Sbjct: 58 VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAE 117
Query: 121 LECISEAYPKSVNYWTREKGDMIANGKTPFQ 151
+ C + P W ++ F
Sbjct: 118 VVCRVSSSPAPAVSWLYHNEEVTTISDNRFA 148
Score = 27.9 bits (62), Expect = 1.4
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
+ G Y+C A+N G K+ L V
Sbjct: 253 RNIINSDGGPYVCRATNKAG---EDEKQAFLQVF 283
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 71.8 bits (176), Expect = 1e-16
Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 17/96 (17%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ E G Y C+ + + V+ PDI +
Sbjct: 61 NKPRAEDSGEYHCVYHFV--SAPKANATIEVK-------------AAPDITGHK--RSEN 103
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN 97
EG + M C + G P P MWR++ + N
Sbjct: 104 KNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISN 139
Score = 56.0 bits (135), Expect = 1e-10
Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 40/140 (28%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPP--SIMWRREGGEMITNS---------- 95
P I+ I+ V+++C + S W + G E+
Sbjct: 3 EPRIVTSE--EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRI 60
Query: 96 --------------FNNT------------VPPIVKIPSQLIGAHEGQQLVLECISEAYP 129
++ P + + +EGQ ++ C S YP
Sbjct: 61 NKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYP 120
Query: 130 KSVNYWTREKGDMIANGKTP 149
W +++ +
Sbjct: 121 HPEWMWRKKENGVFEEISNS 140
Score = 31.7 bits (72), Expect = 0.060
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 6 REHMGAYLCIASNGVPPSVSKRIMLIVQ 33
E G Y C A+N + S S +L V+
Sbjct: 163 TEDPGEYECNATNSI-GSASVSTVLRVR 189
Score = 29.8 bits (67), Expect = 0.22
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSV--NYWTREKGDMIANGKT 148
P + ++I + L+C + ++ +YWT+ ++ A K
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN 52
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 74.5 bits (183), Expect = 1e-16
Identities = 27/181 (14%), Positives = 52/181 (28%), Gaps = 56/181 (30%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ + + H+G Y C ASN + +KL + +PP P +
Sbjct: 161 ILQTDQSHVGQYNCSASNPLG-----------TASSSAKLTLSEHEVPPFFDLKP--VSV 207
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREGGEM-------ITNSFNNTV------------- 100
+ G + + +C +G+ P I W ++ E+ +T N
Sbjct: 208 DLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQ 267
Query: 101 -----------------------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR 137
P +K + + EC P+ W +
Sbjct: 268 YTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK 327
Query: 138 E 138
+
Sbjct: 328 D 328
Score = 72.9 bits (179), Expect = 5e-16
Identities = 27/193 (13%), Positives = 54/193 (27%), Gaps = 62/193 (32%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
+V +G Y C A N G +V+ +L+++ +PP D
Sbjct: 66 NKVDHSDVGEYTCKAENSVG---AVASSAVLVIK----------ERKLPPSFARKL--KD 110
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS------------------------ 95
+ G V+ C +GS P + W ++G + ++
Sbjct: 111 VHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVG 170
Query: 96 ---------------------FNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY 134
+ VPP + + G+ +C
Sbjct: 171 QYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKIT 230
Query: 135 WTREKGDMIANGK 147
W ++ ++ G
Sbjct: 231 WAKDNREIRPGGN 243
Score = 69.4 bits (170), Expect = 8e-15
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 16/94 (17%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
V +G Y C ASN V S + + ++ PP + SDI
Sbjct: 445 LNVDSADIGEYQCKASNDVG-SDTCVGSITLKA-------------PPRFVKKL--SDIS 488
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
G V ++ G+ P S+ W ++ GE++ S
Sbjct: 489 TVVGEEVQLQATIEGAEPISVAWFKDKGEIVRES 522
Score = 69.1 bits (169), Expect = 1e-14
Identities = 32/189 (16%), Positives = 57/189 (30%), Gaps = 57/189 (30%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+V++ G Y C ASN S L VQ PP + S +
Sbjct: 258 LKVTKGDAGQYTCYASNVAG-KDSCSAQLGVQ-------------EPPRFIKKLEPS-RI 302
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN----------------------- 98
V++ + C GSP ++W ++ E+ +S
Sbjct: 303 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 362
Query: 99 -------------------TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREK 139
PP+ + + +G + LEC + P W ++K
Sbjct: 363 TCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDK 422
Query: 140 GDMIANGKT 148
++ + K
Sbjct: 423 RELRSGKKY 431
Score = 67.5 bits (165), Expect = 4e-14
Identities = 33/190 (17%), Positives = 55/190 (28%), Gaps = 62/190 (32%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
+S E G Y C A N G S S L V+ PP P
Sbjct: 352 YNLSVEDSGDYTCEAHNAAG---SASSSTSLKVK-------------EPPVFRKKP--HP 393
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS--------------FNNT------ 99
+ +G++V + C G+PP + W ++ E+ + N
Sbjct: 394 VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIG 453
Query: 100 ----------------------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR 137
PP I G+++ L+ E W +
Sbjct: 454 EYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFK 513
Query: 138 EKGDMIANGK 147
+KG+++
Sbjct: 514 DKGEIVRESD 523
Score = 53.7 bits (129), Expect = 3e-09
Identities = 15/135 (11%), Positives = 32/135 (23%), Gaps = 47/135 (34%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT-------- 99
PP ++ + G ++++C G+P I W +E ++ +
Sbjct: 5 PPYFIEPL--EHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62
Query: 100 -------------------------------------VPPIVKIPSQLIGAHEGQQLVLE 122
+PP + + G + E
Sbjct: 63 LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122
Query: 123 CISEAYPKSVNYWTR 137
C W +
Sbjct: 123 CRINGSEPLQVSWYK 137
Score = 32.1 bits (73), Expect = 0.063
Identities = 6/32 (18%), Positives = 9/32 (28%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+ + G Y C N + L V
Sbjct: 539 SRAEPANAGKYTCQIKNEA-GTQECFATLSVL 569
Score = 30.2 bits (68), Expect = 0.29
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTRE 138
PP P + + A G+ + L+C + P+ W +E
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKE 42
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 71.9 bits (176), Expect = 2e-16
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 17/96 (17%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSK-RIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ V+R+ G Y C+ S + + I L V +PP
Sbjct: 70 SSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL-------------VPPSKPTIS--VPS 114
Query: 61 MVREGSNVSMRC-AASGSPPPSIMWRREGGEMITNS 95
V G+ + C GSPP W ++G M+T
Sbjct: 115 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTAD 150
Score = 61.5 bits (149), Expect = 1e-12
Identities = 24/151 (15%), Positives = 37/151 (24%), Gaps = 53/151 (35%)
Query: 54 YPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT-------------- 99
Y SD+ V E ++ + C SG P + W+ G N+
Sbjct: 5 YTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS 64
Query: 100 --------------------------------------VPPIVKIPSQLIGAHEGQQLVL 121
VPP S G + VL
Sbjct: 65 SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVL 124
Query: 122 ECIS-EAYPKSVNYWTREKGDMIANGKTPFQ 151
C + P S W ++ M+ +
Sbjct: 125 TCSEHDGSPPSEYSWFKDGISMLTADAKKTR 155
Score = 32.2 bits (73), Expect = 0.042
Identities = 7/44 (15%), Positives = 12/44 (27%)
Query: 102 PIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN 145
V + E + + L C + W +G A
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTAL 45
Score = 28.4 bits (63), Expect = 0.74
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 2 TEVSREHMGAYLCIASNGV 20
V+ G Y C A NG
Sbjct: 174 DPVTAFDSGEYYCQAQNGY 192
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 71.4 bits (175), Expect = 2e-16
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 12/94 (12%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+++ G Y C + R ++++ ++PP I S +
Sbjct: 62 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIV------------NVPPAISMPQKSFNAT 109
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
G ++ C ASGSP P+I W R G + N
Sbjct: 110 AERGEEMTFSCRASGSPEPAISWFRNGKLIEENE 143
Score = 55.9 bits (135), Expect = 1e-10
Identities = 22/144 (15%), Positives = 39/144 (27%), Gaps = 48/144 (33%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG------------------- 88
+ S ++G + + C S SP P++ W
Sbjct: 2 MLTFREVV--SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 59
Query: 89 ----------------------GEMITNSFNNTV--PPIVKIPSQL--IGAHEGQQLVLE 122
GE+ V PP + +P + A G+++
Sbjct: 60 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 119
Query: 123 CISEAYPKSVNYWTREKGDMIANG 146
C + P+ W R G +I
Sbjct: 120 CRASGSPEPAISWFRN-GKLIEEN 142
Score = 29.7 bits (67), Expect = 0.26
Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKTPFQ 151
++ ++ S +G+ + C + P W ++ F
Sbjct: 1 SMLTFREVVSPQE-FKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFA 52
Score = 28.2 bits (63), Expect = 0.86
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQCQ 35
+ G Y+C A+N G K+ L V Q
Sbjct: 157 RNIINSDGGPYVCRATNKAG---EDEKQAFLQVFVQ 189
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 73.7 bits (181), Expect = 2e-16
Identities = 34/187 (18%), Positives = 50/187 (26%), Gaps = 51/187 (27%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ + G Y C A N + + L P S+++
Sbjct: 182 SRLQPGDSGVYRCSARNPASTRTGNEAEVRIL-------SDPGLHRQLYFLQRP--SNVI 232
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMI----------------------------- 92
EG + + C SG PPPS W R +
Sbjct: 233 AIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTC 292
Query: 93 --TNSFNNT---------VPP-IVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKG 140
T N VPP + PS L A+E + EC P W +
Sbjct: 293 VVTYKNENISASAELTVLVPPWFLNHPSNLY-AYESMDIEFECAVSGKPVPTVNWMKNGD 351
Query: 141 DMIANGK 147
+I +
Sbjct: 352 VVIPSDY 358
Score = 62.2 bits (151), Expect = 2e-12
Identities = 32/196 (16%), Positives = 48/196 (24%), Gaps = 65/196 (33%)
Query: 2 TEVSREHMGAYLCIASNGVP-PSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ + G Y C AS G +S+ ++V P L I
Sbjct: 87 SRHHKPDEGLYQCEASLGDSGSIISRTAKVMVA-------------GPLRFLSQT--ESI 131
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREG-------------------------------- 88
G V ++C G P P+I W++
Sbjct: 132 TAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGV 191
Query: 89 ---------GEMITNSFNNTV--------PPIVKIPSQLIGAHEGQQLVLECISEAYPKS 131
N + + A EG+ VLEC YP
Sbjct: 192 YRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPP 251
Query: 132 VNYWTREKGDMIANGK 147
W R + + K
Sbjct: 252 SFTWLRGEEVIQLRSK 267
Score = 49.8 bits (119), Expect = 4e-08
Identities = 20/139 (14%), Positives = 36/139 (25%), Gaps = 51/139 (36%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPP-PSIMWRREGGEMITNSFNNT------- 99
+ P SD + G NV + C+A P I W+++G + +
Sbjct: 21 SLHFVSEP--SDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGS 78
Query: 100 -----------------------------------------VPPIVKIPSQLIGAHEGQQ 118
P ++ I A G
Sbjct: 79 LLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDT 138
Query: 119 LVLECISEAYPKSVNYWTR 137
++L+C P +W +
Sbjct: 139 VLLKCEVIGDPMPTIHWQK 157
Score = 30.6 bits (69), Expect = 0.18
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
V + G Y C+A N + LIV
Sbjct: 370 LGVVKSDEGFYQCVAENEA-GNAQSSAQLIVP 400
Score = 27.1 bits (60), Expect = 2.4
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY-WTRE 138
V PS + G ++L C +E+ W ++
Sbjct: 22 LHFVSEPSDAV-TMRGGNVLLNCSAESDRGVPVIKWKKD 59
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 71.8 bits (176), Expect = 2e-16
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQC--QYFSKLYIYTSSMPPDILDYPTSSD 59
V + G Y+C +N S+ L V + F + S I PT
Sbjct: 70 NAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPT--S 127
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ GS + ++C A GSP P W + + +
Sbjct: 128 QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET 163
Score = 56.4 bits (136), Expect = 1e-10
Identities = 20/139 (14%), Positives = 32/139 (23%), Gaps = 51/139 (36%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGE----------------- 90
I P V G V + C A+G P W + E
Sbjct: 18 GSKITVNP--ESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVK 75
Query: 91 -------MITNSF-------------------------NNTVPPIVKIPSQLIGAHEGQQ 118
+ N+F + + + G
Sbjct: 76 DAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGST 135
Query: 119 LVLECISEAYPKSVNYWTR 137
LVL+C++ P W +
Sbjct: 136 LVLQCVAVGSPIPHYQWFK 154
Score = 27.9 bits (62), Expect = 1.1
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
V EH G Y C N SK++ +I+
Sbjct: 170 PYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 201
Score = 26.4 bits (58), Expect = 3.6
Identities = 6/43 (13%), Positives = 15/43 (34%)
Query: 100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM 142
+ + + GQ + L C + +P W + ++
Sbjct: 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI 59
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 71.0 bits (174), Expect = 3e-16
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 16/100 (16%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
V R G Y C +G +S+ + L V+ P P D+
Sbjct: 65 KSVERSDAGRYWCQVEDGGETEISQPVWLTVE-------------GVPFFTVEP--KDLA 109
Query: 62 VREGSNVSMRCAASGSPPP-SIMWRREGGEMITNSFNNTV 100
V + + C A G P P +I+W R ++ + + +V
Sbjct: 110 VPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSV 149
Score = 52.5 bits (126), Expect = 2e-09
Identities = 21/148 (14%), Positives = 37/148 (25%), Gaps = 48/148 (32%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG------------------- 88
++ P + V +G V + C+ G P I W ++G
Sbjct: 2 GLKLMGAP--VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI 59
Query: 89 ------------------------GEMITNSFNNTV--PPIVKIPSQLIGAHEGQQLVLE 122
I+ TV P + + + L
Sbjct: 60 GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLS 119
Query: 123 CISEAYPKSVNY-WTREKGDMIANGKTP 149
C + P+ V W R + +P
Sbjct: 120 CEAVGPPEPVTIVWWRGTTKIGGPAPSP 147
Score = 28.2 bits (63), Expect = 0.94
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+ C A N + S+ + +Q
Sbjct: 153 TGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 71.0 bits (174), Expect = 3e-16
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 15/94 (15%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ E G Y C A++ + ++L + + S
Sbjct: 63 YNANIEDAGIYRCQATDAKGQTQEATVVLEIY-------------QKLTFREVV--SPQE 107
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
++G + + C S SP P++ W E+ T S
Sbjct: 108 FKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS 141
Score = 51.7 bits (124), Expect = 5e-09
Identities = 14/148 (9%), Positives = 31/148 (20%), Gaps = 47/148 (31%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG------------------- 88
+ S + + G + C A G P + +G
Sbjct: 2 LLQVTISL--SKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 59
Query: 89 ----------------------GEMITNSFNNTV---PPIVKIPSQLIGAHEGQQLVLEC 123
G+ + + ++ S +G+ + C
Sbjct: 60 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQE-FKQGEDAEVVC 118
Query: 124 ISEAYPKSVNYWTREKGDMIANGKTPFQ 151
+ P W ++ F
Sbjct: 119 RVSSSPAPAVSWLYHNEEVTTISDNRFA 146
Score = 27.1 bits (60), Expect = 2.0
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSV-SKRIMLIVQ 33
+++ G Y C + + I++IV
Sbjct: 156 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN 188
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 72.2 bits (177), Expect = 4e-16
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 12/94 (12%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
G Y C+A+N S L V+ ++ P P
Sbjct: 169 ESSEETDQGKYECVATNSAGVRYSSPANLYVR----------VQNVAPRFSILP--MSHE 216
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ G NV++ C A GSP P + W + ++
Sbjct: 217 IMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPED 250
Score = 65.6 bits (160), Expect = 9e-14
Identities = 33/192 (17%), Positives = 51/192 (26%), Gaps = 55/192 (28%)
Query: 5 SREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVRE 64
+ Y C+A N V ++ L V + S P+I P +V
Sbjct: 72 TPRDENVYECVAQNSVG-EITVHAKLTVLREDQLP------SGFPNIDMGP--QLKVVER 122
Query: 65 GSNVSMRCAASGSPPPSIMWRREGGE------------------MITNSFNN-------- 98
+M CAASG+P P I W ++ I +S
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV 182
Query: 99 --------------------TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTRE 138
V P I G + + C++ P W +
Sbjct: 183 ATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQG 242
Query: 139 KGDMIANGKTPF 150
D+ P
Sbjct: 243 AEDLTPEDDMPV 254
Score = 54.4 bits (131), Expect = 9e-10
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPP 102
T PP + P D + G S C A+G P P + W ++G ++ + F
Sbjct: 2 TGEEPPRFIKEP--KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFD 58
Score = 28.2 bits (63), Expect = 1.1
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 100 VPP-IVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTRE 138
PP +K P I G C + PK W ++
Sbjct: 5 EPPRFIKEPKDQI-GVSGGVASFVCQATGDPKPRVTWNKK 43
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 69.9 bits (171), Expect = 1e-15
Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 11/126 (8%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
M V G Y C+ N S++ L V + P P ++
Sbjct: 80 MESVVPSDKGNYTCVVENEYG-SINHTYHLDVV--------ERSRHRPILQAGLP--ANA 128
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLV 120
G +V C P I W + + + + +P + + I + + L
Sbjct: 129 STVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLA 188
Query: 121 LECISE 126
L ++E
Sbjct: 189 LFNVTE 194
Score = 50.3 bits (120), Expect = 2e-08
Identities = 17/145 (11%), Positives = 35/145 (24%), Gaps = 50/145 (34%)
Query: 44 TSSMPPDILDYPT--SSDIMVREGSNVSMRCAASGSPPPSIMWRREGGE----------- 90
+ P + V + V RC A G+P P++ W + G E
Sbjct: 11 NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK 70
Query: 91 --------MITN----------------------SFNNTV-------PPIVKIPSQLIGA 113
++ + +++ V P +
Sbjct: 71 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANAST 130
Query: 114 HEGQQLVLECISEAYPKSVNYWTRE 138
G + C + + W +
Sbjct: 131 VVGGDVEFVCKVYSDAQPHIQWIKH 155
Score = 27.9 bits (62), Expect = 1.2
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
V+ G Y+C SN G ++ L V
Sbjct: 190 FNVTEADAGEYICKVSNYIG---QANQSAWLTVL 220
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 71.9 bits (176), Expect = 1e-15
Identities = 31/180 (17%), Positives = 51/180 (28%), Gaps = 52/180 (28%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ E G YLC+ +N V S +L V P P
Sbjct: 311 KDAVVEDSGKYLCVVNNSVG-GESVETVLTVT-------------APLSAKIDP--PTQT 354
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS-------------------------- 95
V G C +G+P ++ W ++G + +
Sbjct: 355 VDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRES 414
Query: 96 ---------FNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG 146
PP+++ Q G + L+C++ P W + G IAN
Sbjct: 415 AEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELD-GKKIANN 473
Score = 65.3 bits (159), Expect = 2e-13
Identities = 31/193 (16%), Positives = 51/193 (26%), Gaps = 61/193 (31%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
V +E G Y C N S L + PP I +
Sbjct: 394 ESVKKEDKGMYQCFVRNDRE-SAEASAELKLG----------GRFDPPVIRQAF--QEET 440
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMI----------------------------- 92
+ G +V ++C A G+P P I W +G ++
Sbjct: 441 MEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHAN 500
Query: 93 ---------TNSFNNT---------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY 134
+ P ++ + G+ L++ C YP
Sbjct: 501 DGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEK-KAIVAGETLIVTCPVAGYPIDSIV 559
Query: 135 WTREKGDMIANGK 147
W R+ + N K
Sbjct: 560 WERDNRALPINRK 572
Score = 65.0 bits (158), Expect = 3e-13
Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 16/107 (14%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
V H G + C A N L V +PP + PT D
Sbjct: 682 EAVEASHAGNFTCHARNLAG-HQQFTTPLNVY-------------VPPRWILEPT--DKA 725
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPS 108
+GS+ + C A G P P + W++ G+ + +++
Sbjct: 726 FAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEE 772
Score = 64.6 bits (157), Expect = 4e-13
Identities = 34/180 (18%), Positives = 47/180 (26%), Gaps = 60/180 (33%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
T V G Y CIA + V L V P I
Sbjct: 495 TSVHANDGGLYKCIAKSKVG-VAEHSAKLNVY-------------GLPYIR---QMEKKA 537
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS-----FNNT----------------- 99
+ G + + C +G P SI+W R+ + N N T
Sbjct: 538 IVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTC 597
Query: 100 --------------------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVN-YWTRE 138
+P I+ + A GQ L L C +N WT +
Sbjct: 598 VAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLD 657
Score = 61.9 bits (150), Expect = 4e-12
Identities = 26/202 (12%), Positives = 48/202 (23%), Gaps = 68/202 (33%)
Query: 1 MTEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSS 58
M + + + +A G + + P L P ++
Sbjct: 3 MPNERLKWLMLFAAVALIACGSQTLAANPPDADQK--------------GPVFLKEP-TN 47
Query: 59 DIMVREGSNVSMRCAASGSPPPSIMWRREGGEMI-------------------------- 92
I + + C ASG+P P I+W R G +
Sbjct: 48 RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYR 107
Query: 93 ------------TNSF----------NNTVPPIVKIPSQLIGAHEGQQLVLECISEAY-- 128
N F V + G V++C+ ++
Sbjct: 108 QEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVA 167
Query: 129 -PKSVNYWTREKGDMIANGKTP 149
V W ++ + G
Sbjct: 168 DFVEVVSWHTDEEENYFPGAEY 189
Score = 61.5 bits (149), Expect = 5e-12
Identities = 28/186 (15%), Positives = 51/186 (27%), Gaps = 58/186 (31%)
Query: 6 REHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREG 65
Y C+A N S + + V + P I+ + + + G
Sbjct: 589 NSDQATYTCVAKNQEGYSARGSLEVQVM-------------VLPRIIPFAFE-EGPAQVG 634
Query: 66 SNVSMRCAASGSPPP-SIMWRREGGEM--------------------------------- 91
+++ C+ G P +I W +G +
Sbjct: 635 QYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTC 694
Query: 92 -ITNSFNN---------TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGD 141
N + VPP + +G +EC ++ +PK W + GD
Sbjct: 695 HARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGD 754
Query: 142 MIANGK 147
K
Sbjct: 755 TPGEYK 760
Score = 60.7 bits (147), Expect = 8e-12
Identities = 25/175 (14%), Positives = 39/175 (22%), Gaps = 53/175 (30%)
Query: 10 GAYLCIASN--GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSN 67
+Y C + +S +V + SS P ++ S
Sbjct: 213 KSYQCRTKHRLTGETRLSATKGRLV-------ITEPISSAVPKVVSLAKFDMKTYSGSST 265
Query: 68 VSMRCAASGSPPPSIMWRREGGEMITNSF------------------------------- 96
+++ C A G P P W +
Sbjct: 266 MALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVV 325
Query: 97 NN-------------TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTRE 138
NN T P KI G+ V C P W ++
Sbjct: 326 NNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD 380
Score = 53.4 bits (128), Expect = 3e-09
Identities = 20/205 (9%), Positives = 41/205 (20%), Gaps = 74/205 (36%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
H Y C+A N +S+ + + + + V
Sbjct: 107 RQEVHAQVYACLARNQFGSIISRDVHVRA-------------VVAQYYEADV--NKEHVI 151
Query: 64 EGSNVSMRC---AASGSPPPSIMWRREGGEMI---------------------------- 92
G++ ++C + + W + E
Sbjct: 152 RGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDG 211
Query: 93 --------TNSFNN-------------TVPPIVKIPSQLIG-------AHEGQQLVLECI 124
+ T P +P + + L C
Sbjct: 212 YKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCP 271
Query: 125 SEAYPKSVNYWTREKGDMIANGKTP 149
++ YP V W +
Sbjct: 272 AQGYPVPVFRWYKFIEGTTRKQAVV 296
Score = 36.8 bits (85), Expect = 0.002
Identities = 11/51 (21%), Positives = 17/51 (33%)
Query: 101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKTPFQ 151
P +K P+ I +EC + P W R G + + Q
Sbjct: 39 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ 89
Score = 35.3 bits (81), Expect = 0.006
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+ + + G YLC A NG+ +S IM+ VQ
Sbjct: 778 DNIQKTNEGYYLCEAINGIGSGLSAVIMISVQ 809
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 71.4 bits (175), Expect = 1e-15
Identities = 31/187 (16%), Positives = 54/187 (28%), Gaps = 48/187 (25%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
+V + +G Y C+ +N + LI++ Y P I
Sbjct: 162 AKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEY------EPKIE-VQFPET 214
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS-----FNNT--------------- 99
+ +G+ V + C A G+P P+I+WRR G+ I N
Sbjct: 215 VPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYE 274
Query: 100 -------------------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKG 140
P I + + EC + PK W +
Sbjct: 275 CVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGD 334
Query: 141 DMIANGK 147
++ +
Sbjct: 335 PLLTRDR 341
Score = 66.8 bits (163), Expect = 5e-14
Identities = 30/195 (15%), Positives = 45/195 (23%), Gaps = 66/195 (33%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
+ G Y CIA+N VS+ L + + S + VR
Sbjct: 70 NKTQDAGTYQCIATNSFGTIVSREAKLQF------------AYLENFKTRTR--STVSVR 115
Query: 64 EGSNVSMRCAA-SGSPPPSIMWRREGGEMITNSFNNTV---------------------- 100
G + + C S S W ++
Sbjct: 116 RGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCV 175
Query: 101 -----------------------------PPIVKIPSQLIGAHEGQQLVLECISEAYPKS 131
P I + + A +G + LEC + P
Sbjct: 176 VTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVP 235
Query: 132 VNYWTREKGDMIANG 146
W R G IA
Sbjct: 236 TILWRRADGKPIARK 250
Score = 51.4 bits (123), Expect = 1e-08
Identities = 19/136 (13%), Positives = 31/136 (22%), Gaps = 45/136 (33%)
Query: 48 PPDILDYPTS-SDIMVREGSNVSMRCAASGSPPPSIMWRREGGE---------------- 90
P + P+ + E V + C G+P P I W+ G +
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64
Query: 91 MITNSFNN---------------------------TVPPIVKIPSQLIGAHEGQQLVLEC 123
+I N + + GQ +VL C
Sbjct: 65 LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC 124
Query: 124 -ISEAYPKSVNYWTRE 138
+ W
Sbjct: 125 GPPPHSGELSYAWIFN 140
Score = 27.9 bits (62), Expect = 1.4
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
T V+ G Y C+A N + L V
Sbjct: 352 TIVNLSDAGMYQCVAENKH-GVIFSSAELSVI 382
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 71.4 bits (175), Expect = 1e-15
Identities = 26/183 (14%), Positives = 52/183 (28%), Gaps = 42/183 (22%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ +G Y C A++ + Q L + + +D
Sbjct: 163 AKTEASDLGNYSCFATSHIDFITKSVFSKFSQ----LSLAAEDARQYAPSIKAKFPADTY 218
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN----------------------- 98
G V++ C A G+P P I WR+ G + ++
Sbjct: 219 ALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAEN 278
Query: 99 -----------TV---PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144
+ P + + + A G L C++ P+ W R+ + +
Sbjct: 279 IKGRDTYQGRIIIHAQPDWLDVITDTE-ADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS 337
Query: 145 NGK 147
+
Sbjct: 338 QNR 340
Score = 63.0 bits (153), Expect = 1e-12
Identities = 28/197 (14%), Positives = 44/197 (22%), Gaps = 69/197 (35%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
V + G+Y C+A+N VS+ L + + + +
Sbjct: 69 VKAKDAGSYQCVATNARGTVVSREASLRF------------GFLQEFSAEER--DPVKIT 114
Query: 64 EGSNVSMRCAA-SGSPPPSIMWRREGGEMI------------------------------ 92
EG V C+ P S W
Sbjct: 115 EGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYS 174
Query: 93 ---TNSFNNT---------------------VPPIVKIPSQLIGAHEGQQLVLECISEAY 128
T+ + P I A GQ + LEC +
Sbjct: 175 CFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGN 234
Query: 129 PKSVNYWTREKGDMIAN 145
P W + G +
Sbjct: 235 PVPQIKWRKLDGSQTSK 251
Score = 50.6 bits (121), Expect = 2e-08
Identities = 22/140 (15%), Positives = 36/140 (25%), Gaps = 49/140 (35%)
Query: 46 SMPPDILDYPTSSDIMVREGS---NVSMRCAASGSPPPSIMWRREGGE------------ 90
S P + P + + EGS V++ C A +PP + W+ G E
Sbjct: 2 SYGPVFEEQP--AHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV 59
Query: 91 ----MITNSFNN---------------------------TVPPIVKIPSQLIGAHEGQQL 119
+I+N + + EG +
Sbjct: 60 AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGV 119
Query: 120 VLEC-ISEAYPKSVNYWTRE 138
+ C YP W
Sbjct: 120 MFTCSPPPHYPALSYRWLLN 139
Score = 27.9 bits (62), Expect = 1.6
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+++ E G Y C+A N +V L VQ
Sbjct: 351 SKLVLEDSGMYQCVAENKH-GTVYASAELTVQ 381
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 69.0 bits (169), Expect = 2e-15
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 14/94 (14%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
V++ + G Y A+NG + L+V+ + PP+ + +
Sbjct: 68 PAVTKANSGRYSLKATNGSG-QATSTAELLVK----------AETAPPNFVQRL--QSMT 114
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
VR+GS V ++ +G P P + + R+ G I +S
Sbjct: 115 VRQGSQVRLQVRVTGIPTPVVKFYRD-GAEIQSS 147
Score = 54.7 bits (132), Expect = 3e-10
Identities = 25/150 (16%), Positives = 39/150 (26%), Gaps = 50/150 (33%)
Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGE-------------- 90
++ P ++V EGS + SG P P + W R+G
Sbjct: 2 TTQAPTFTQPL--QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFS 59
Query: 91 ------MITNSF---------------------------NNTVPPIVKIPSQLIGAHEGQ 117
I T PP Q + +G
Sbjct: 60 DGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGS 119
Query: 118 QLVLECISEAYPKSVNYWTREKGDMIANGK 147
Q+ L+ P V + R+ G I +
Sbjct: 120 QVRLQVRVTGIPTPVVKFYRD-GAEIQSSL 148
Score = 28.9 bits (65), Expect = 0.50
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
E E G Y A+N G + L+VQ
Sbjct: 164 AEAYPEDSGTYSVNATNSVG---RATSTAELLVQ 194
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 68.7 bits (168), Expect = 3e-15
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 5 SREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVRE 64
+ Y C+A NGV +VS L + T + P I P ++
Sbjct: 73 AGRDDAPYECVAENGVGDAVSADATLTIY------EGDKTPAGFPVITQGP--GTRVIEV 124
Query: 65 GSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
G V M C A G+P P+I W + + S
Sbjct: 125 GHTVLMTCKAIGNPTPNIYWIK-NQTKVDMS 154
Score = 58.3 bits (141), Expect = 2e-11
Identities = 29/148 (19%), Positives = 46/148 (31%), Gaps = 55/148 (37%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREG--------------- 88
T + PP+I+ P + VR G S CAA G PPPSI+WR+ G
Sbjct: 2 TGAHPPEIIRKP--QNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQ 59
Query: 89 -----------------------------GEMITNSFNNTV---------PPIVKIPSQL 110
G+ ++ T+ P++
Sbjct: 60 PGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGT 119
Query: 111 IGAHEGQQLVLECISEAYPKSVNYWTRE 138
G +++ C + P YW +
Sbjct: 120 RVIEVGHTVLMTCKAIGNPTPNIYWIKN 147
Score = 28.6 bits (64), Expect = 0.66
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
E G Y C+A N + SK L V+
Sbjct: 168 ENSREEDQGKYECVAENSMGTEHSKATNLYVK 199
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 69.4 bits (169), Expect = 5e-15
Identities = 26/133 (19%), Positives = 44/133 (33%), Gaps = 14/133 (10%)
Query: 1 MTEVSREHMGAYLCIASN---GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTS 57
+ V+ +H G Y C AS G +++ I I + P I+ P +
Sbjct: 166 VMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEE--------NKPTRPVIV-SPAN 216
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQ 117
+ V GS + + C +G W+ G +I + +
Sbjct: 217 ETMEVDLGSQIQLICNVTGQLSDIAYWKW-NGSVIDEDDPVLGEDYYSVENPANKRRSTL 275
Query: 118 QLVLECISEAYPK 130
VL ISE +
Sbjct: 276 ITVLN-ISEIESR 287
Score = 50.5 bits (120), Expect = 3e-08
Identities = 20/191 (10%), Positives = 40/191 (20%), Gaps = 67/191 (35%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
E G Y C+ N + +I + P +
Sbjct: 67 VPAKVEDSGHYYCVVRNSSY-CLRIKISAKFV-----------ENEPNLCYNAQAIFKQK 114
Query: 62 VREGSNVSMRC------AASGSPPPSIMWRREGGE------------------------- 90
+ + + C + P + W ++
Sbjct: 115 LPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHR 174
Query: 91 -----MITNSFN-------------------NTVPPIVKIPSQLIGAHEGQQLVLECISE 126
+ ++ T P IV ++ + G Q+ L C
Sbjct: 175 GNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVT 234
Query: 127 AYPKSVNYWTR 137
+ YW
Sbjct: 235 GQLSDIAYWKW 245
Score = 35.5 bits (81), Expect = 0.004
Identities = 3/53 (5%), Positives = 15/53 (28%), Gaps = 1/53 (1%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPP-SIMWRREGGEMITNSFNNT 99
+ ++ C + + +I W ++ + ++ +
Sbjct: 3 ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQAS 55
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 67.6 bits (165), Expect = 7e-15
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
V G Y C S+ + + T P DI+ D+
Sbjct: 71 ANVEASDKGNYSCFVSSPSITKSVFSKFIPLI----PIPERTTKPYPADIVVQF--KDVY 124
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF 96
G NV++ C A G+P P I WR+ M + +
Sbjct: 125 ALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAE 159
Score = 46.0 bits (109), Expect = 6e-07
Identities = 20/156 (12%), Positives = 36/156 (23%), Gaps = 56/156 (35%)
Query: 47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP--SIMWRREGGE-------------- 90
+ P + ++ V+EG + + C P S W
Sbjct: 7 LDPFPPEER--PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT 64
Query: 91 ----MITN----------------------------------SFNNTVPPIVKIPSQLIG 112
I N P + + + +
Sbjct: 65 NGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY 124
Query: 113 AHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKT 148
A GQ + LEC + P W + M + +
Sbjct: 125 ALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEI 160
Score = 31.4 bits (71), Expect = 0.070
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+ E G Y C A N + + VQ
Sbjct: 170 FNIQLEDEGIYECEAENIR-GKDKHQARIYVQ 200
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 69.2 bits (169), Expect = 8e-15
Identities = 25/192 (13%), Positives = 49/192 (25%), Gaps = 52/192 (27%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
T+ + Y+C A N + ++ P D+M
Sbjct: 169 TKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKG---EPVPQYVS--KDMM 223
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREG--------------------------------- 88
+ G + C +P + + G
Sbjct: 224 AKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEG 283
Query: 89 ----------GEMITNSFNNTV---PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYW 135
G+ +S TV P + P ++I +GQ + + C P W
Sbjct: 284 VYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVW 343
Query: 136 TREKGDMIANGK 147
+ ++ G+
Sbjct: 344 SHN-AKPLSGGR 354
Score = 53.4 bits (128), Expect = 3e-09
Identities = 14/95 (14%), Positives = 23/95 (24%), Gaps = 16/95 (16%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
G Y C A + S+ I + +
Sbjct: 67 LRPQASDEGHYQCFAETPAGVASSRVISFRK-------------TYLIASPAKT--HEKT 111
Query: 62 VREGSNVSMRC-AASGSPPPSIMWRREGGEMITNS 95
EG + C + P P I W++ N+
Sbjct: 112 PIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNA 146
Score = 50.3 bits (120), Expect = 3e-08
Identities = 22/144 (15%), Positives = 40/144 (27%), Gaps = 46/144 (31%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPP-SIMWRREGGE---------------- 90
P + D P ++++ RE + + C G+ W+++G
Sbjct: 6 YPVLKDQP--AEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 63
Query: 91 -MITN-------------------------SFNNTVPPIVKIPSQLIGAHEGQQLVLEC- 123
+ SF T + EG+ L+C
Sbjct: 64 LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCV 123
Query: 124 ISEAYPKSVNYWTREKGDMIANGK 147
+ AYPK + W + N
Sbjct: 124 LPNAYPKPLITWKKRLSGADPNAD 147
Score = 36.4 bits (84), Expect = 0.002
Identities = 8/52 (15%), Positives = 20/52 (38%)
Query: 99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKTPF 150
P+ + S+ + A G ++ C+ + P + + D+ N +
Sbjct: 210 KGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRI 261
Score = 26.0 bits (57), Expect = 5.7
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 2 TEVSREHMGAYLCIASNGV 20
V G Y C A+N
Sbjct: 365 KGVKNGDKGYYGCRATNEH 383
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 66.8 bits (163), Expect = 9e-15
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 16/95 (16%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
T + G Y C+ G VS+ + ++ P L+ P D
Sbjct: 73 TSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE-------------GLPYFLEEP--EDRT 117
Query: 62 VREGSNVSMRCAASGSPPP-SIMWRREGGEMITNS 95
V + ++ C A G P P ++W ++ + T
Sbjct: 118 VAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP 152
Score = 44.5 bits (105), Expect = 2e-06
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAA-SGSPPPSIMWRREGGEMITNSFNNTVPPI 103
+ P +I G ++RC PP + W R+G + T P+
Sbjct: 2 ESPFVGNP--GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPL 56
Score = 28.7 bits (64), Expect = 0.60
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32
+ ++ C A N + S+ + V
Sbjct: 160 LHVPGLNKTSSFSCEAHNAKGVTTSRTATITV 191
Score = 25.2 bits (55), Expect = 9.2
Identities = 6/27 (22%), Positives = 8/27 (29%), Gaps = 1/27 (3%)
Query: 101 PPIVKIPSQLIGAHEGQQLVLECISEA 127
P V P + G L C +
Sbjct: 3 SPFVGNPGNIT-GARGLTGTLRCQLQV 28
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 66.6 bits (163), Expect = 1e-14
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+E G Y CIA+N V V L++Q + P YP
Sbjct: 68 MTEEQEDEGVYTCIATNEVG-EVETSSKLLLQ------------ATPQFHPGYPLKEKYY 114
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
GS + + G P P++ W G +++ NS
Sbjct: 115 GAVGSTLRLHVMYIGRPVPAMTWFH-GQKLLQNS 147
Score = 52.4 bits (126), Expect = 3e-09
Identities = 22/145 (15%), Positives = 31/145 (21%), Gaps = 48/145 (33%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGE----------------- 90
P I D+ + G + C G P P I W R G E
Sbjct: 7 APGIRKEM--KDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64
Query: 91 -MITNSF-----------NNTV--------------PPIVKIP--SQLIGAHEGQQLVLE 122
+ N V P + G L L
Sbjct: 65 LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH 124
Query: 123 CISEAYPKSVNYWTREKGDMIANGK 147
+ P W ++ N +
Sbjct: 125 VMYIGRPVPAMTWFHG-QKLLQNSE 148
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 67.7 bits (165), Expect = 2e-14
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 11/94 (11%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
Y C A G +S I L VQ PP + P ++++
Sbjct: 149 HRAKFIQSQDYQCSALMGGRKVMSISIRLKVQ---------KVIPGPPALTLVP--AELV 197
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
G + C+AS ++ + +
Sbjct: 198 RIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIP 231
Score = 66.5 bits (162), Expect = 5e-14
Identities = 19/193 (9%), Positives = 47/193 (24%), Gaps = 61/193 (31%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ ++ G Y C S I L V+ P + + +++
Sbjct: 56 NNATFQNTGTYRCTEPGDPL-GGSAAIHLYVK-------------DPARPWN-VLAQEVV 100
Query: 62 VREGSNVSMRCAASGSPP-PSIMWRREGGEMITNSFNNTV-------------------- 100
V E + + C + + R G + N +
Sbjct: 101 VFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQ 160
Query: 101 -------------------------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYW 135
PP + + + G+ + C + + + + +
Sbjct: 161 CSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVF 220
Query: 136 TREKGDMIANGKT 148
+ +A +
Sbjct: 221 LQHNNTKLAIPQQ 233
Score = 40.3 bits (94), Expect = 7e-05
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 37/136 (27%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGS------PPPSIMWRREGGE---MITN-SFN 97
P I P+ +++V+ G+ V++RC +GS P P +G N +F
Sbjct: 4 IPVIE--PSVPELVVKPGATVTLRCVGNGSVEWDGPPSPHWTLYSDGSSSILSTNNATFQ 61
Query: 98 NT-----------------------VPP-IVKIPSQLIGAHEGQQLVLECISEAYPKSVN 133
NT P + +Q + E Q +L C+
Sbjct: 62 NTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAG 121
Query: 134 Y-WTREKGDMIANGKT 148
R +G +
Sbjct: 122 VSLVRVRGRPLMRHTN 137
Score = 30.7 bits (69), Expect = 0.13
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+V +H G Y C+ASN S + V
Sbjct: 250 DQVDFQHAGNYSCVASNVQ-GKHSTSMFFRVV 280
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 68.0 bits (166), Expect = 2e-14
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
T VS E G Y C+ASN + S+ I + V+ P LD P +++
Sbjct: 280 TNVSEEDSGEYFCLASNKMG-SIRHTISVRVK-------------AAPYWLDEP--KNLI 323
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN 97
+ G + + C A+G+P P++ W G + + N
Sbjct: 324 LAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPN 359
Score = 67.6 bits (165), Expect = 3e-14
Identities = 33/171 (19%), Positives = 47/171 (27%), Gaps = 48/171 (28%)
Query: 10 GAYLCIASN--GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSN 67
Y C A L V P + T+S MV G +
Sbjct: 185 TDYSCNARFHFTHTIQQKNPFTLKVLTTR-----GVAERTPSFMYPQGTASSQMVLRGMD 239
Query: 68 VSMRCAASGSPPPSIMWRREGGEMITNS-----FNNT----------------------- 99
+ + C ASG P P I W ++GG++ ++ FN
Sbjct: 240 LLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMG 299
Query: 100 -----------VPP-IVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTRE 138
P + P LI G+ L C + PK W
Sbjct: 300 SIRHTISVRVKAAPYWLDEPKNLI-LAPGEDGRLVCRANGNPKPTVQWMVN 349
Score = 59.9 bits (145), Expect = 2e-11
Identities = 38/200 (19%), Positives = 59/200 (29%), Gaps = 69/200 (34%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
E+ G Y C A N ++S RI L V S P ++V+
Sbjct: 84 RPEEYEGEYQCFARNKFGTALSNRIRLQV-------------SKSPLWPKENLD-PVVVQ 129
Query: 64 EGSNVSMRCAA-SGSPPPSIMWRREGGEMI------------------------------ 92
EG+ ++++C G P P I W E I
Sbjct: 130 EGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSC 189
Query: 93 --TNSFNNTV-------------------PPIVKIP---SQLIGAHEGQQLVLECISEAY 128
F +T+ P P + G L+LECI+
Sbjct: 190 NARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGV 249
Query: 129 PKSVNYWTREKGDMIANGKT 148
P W ++ GD+ ++
Sbjct: 250 PTPDIAWYKKGGDLPSDKAK 269
Score = 55.6 bits (134), Expect = 5e-10
Identities = 27/149 (18%), Positives = 37/149 (24%), Gaps = 50/149 (33%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGE----------------- 90
PP I + D +V N+ + C A G+P PS W R
Sbjct: 16 PPTITKQS-AKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGT 74
Query: 91 -MITNSFNNT------------------------------VPPIVKIPSQLIGAHEGQQL 119
+I P K + EG L
Sbjct: 75 LVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPL 134
Query: 120 VLEC-ISEAYPKSVNYWTREKGDMIANGK 147
L+C P V +W + I K
Sbjct: 135 TLQCNPPPGLPSPVIFWMSSSMEPITQDK 163
Score = 30.6 bits (69), Expect = 0.16
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 95 SFNNTV---PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR 137
S N + P I K ++ +++EC ++ P +WTR
Sbjct: 8 SIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR 53
Score = 28.3 bits (63), Expect = 1.1
Identities = 5/32 (15%), Positives = 8/32 (25%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+ Y C SN + + V
Sbjct: 372 RDTQISSRAVYQCNTSNEH-GYLLANAFVSVL 402
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 67.7 bits (165), Expect = 3e-14
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 17/94 (18%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ E G YLC+ +N V S +L V P P
Sbjct: 275 KDAVVEDSGKYLCVVNNSVG-GESVETVLTVT-------------APLSAKIDP--PTQT 318
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
V G C +G+P ++ W ++ G+ I +S
Sbjct: 319 VDFGRPAVFTCQYTGNPIKTVSWMKD-GKAIGHS 351
Score = 58.0 bits (140), Expect = 6e-11
Identities = 26/180 (14%), Positives = 39/180 (21%), Gaps = 55/180 (30%)
Query: 10 GAYLCIASN--GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSN 67
+Y C + +S +V + S + +
Sbjct: 178 KSYQCRTKHRLTGETRLSATKGRLVITE--------PISSSAPRTPALVQKPLELMVAHT 229
Query: 68 VSMRCAASGSPPPSIMWRREGGEMITNSF------------------------------- 96
+S+ C A G P PS W +
Sbjct: 230 ISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVV 289
Query: 97 NN-------------TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI 143
NN T P KI G+ V C P W ++ G I
Sbjct: 290 NNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD-GKAI 348
Score = 53.8 bits (129), Expect = 2e-09
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
P L P ++ I + + C ASG+P P I+W R G + +
Sbjct: 3 GPVFLKEP-TNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDV 49
Score = 52.2 bits (125), Expect = 6e-09
Identities = 16/204 (7%), Positives = 37/204 (18%), Gaps = 73/204 (35%)
Query: 5 SREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVRE 64
H Y C+A N +S+ + + + + V
Sbjct: 73 QEVHAQVYACLARNQFGSIISRDVHVRA-------------VVAQYYEADV--NKEHVIR 117
Query: 65 GSNVSMRCAA---SGSPPPSIMWRREGGEMITNS----------------FNNTVP---- 101
G++ ++C + W + E P
Sbjct: 118 GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGY 177
Query: 102 -----------------------------------PIVKIPSQLIGAHEGQQLVLECISE 126
+ + + + L C ++
Sbjct: 178 KSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQ 237
Query: 127 AYPKSVNYWTREKGDMIANGKTPF 150
+P W +
Sbjct: 238 GFPAPSFRWYKFIEGTTRKQAVVL 261
Score = 32.6 bits (74), Expect = 0.031
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG 146
P +K P+ I +EC + P W R G + +
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDV 49
Score = 26.1 bits (57), Expect = 6.6
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 2 TEVSREHMGAYLCIASNGV 20
V +E G Y C N
Sbjct: 358 ESVKKEDKGMYQCFVRNDR 376
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 65.9 bits (161), Expect = 3e-14
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 16/96 (16%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
V+ + Y A+N G SVS L V+ + P L+
Sbjct: 67 ASVTDDDATVYQVRATNQGG---SVSGTASLEVE--------VPAKIHLPKTLEGM--GA 113
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ G VS++ SG P P I W++ G ++I N+
Sbjct: 114 VHALRGEVVSIKIPFSGKPDPVITWQK-GQDLIDNN 148
Score = 57.8 bits (140), Expect = 3e-11
Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 52/151 (34%)
Query: 46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN-------- 97
+M P + ++ VR SN ++ C +G P P + W R+G E+I +
Sbjct: 2 AMAPHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKG 59
Query: 98 -----------------------NT-------------VPPIVKIPS-----QLIGAHEG 116
N VP + +P + A G
Sbjct: 60 GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 119
Query: 117 QQLVLECISEAYPKSVNYWTREKGDMIANGK 147
+ + ++ P V W + D+I N
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKG-QDLIDNNG 149
Score = 26.6 bits (59), Expect = 3.2
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
V R+ G Y+ A N G K + L V
Sbjct: 166 NGVERKDAGFYVVCAKNRFG---IDQKTVELDVA 196
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 65.2 bits (159), Expect = 4e-14
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 17/109 (15%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ + G Y+C A+N K+ L V + P I+ +
Sbjct: 62 VRNIINSDGGPYVCRATNKAG-EDEKQAFLQVF-------------VQPHIIQLK---NE 104
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQ 109
E V++ C A G P P I W+R + ++ +++ Q
Sbjct: 105 TTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 153
Score = 59.8 bits (145), Expect = 4e-12
Identities = 29/134 (21%), Positives = 42/134 (31%), Gaps = 44/134 (32%)
Query: 46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGE--------------- 90
SMP I S + G ++ C ASGSP P+I W R G
Sbjct: 1 SMPA-ISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE 59
Query: 91 -MITNSF-----------NNTV--------------PPIVKIPSQLIGAHEGQQLVLECI 124
+ N N P I+++ ++ +E Q+ L C
Sbjct: 60 LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNET--TYENGQVTLVCD 117
Query: 125 SEAYPKSVNYWTRE 138
+E P W R
Sbjct: 118 AEGEPIPEITWKRA 131
Score = 29.8 bits (67), Expect = 0.25
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+V G Y C A++ + K + L ++
Sbjct: 162 KDVKLSDSGRYDCEAASRI-GGHQKSMYLDIE 192
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 66.6 bits (162), Expect = 5e-14
Identities = 19/104 (18%), Positives = 29/104 (27%), Gaps = 9/104 (8%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYP----- 55
+ S E GAY C + + + +
Sbjct: 65 VLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTR 124
Query: 56 ----TSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ V + V RC A+G+P PSI W + G E
Sbjct: 125 PERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH 168
Score = 64.3 bits (156), Expect = 3e-13
Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 13/129 (10%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
M V G Y C+ N S+ + L V + + P P ++
Sbjct: 184 MESVVPSDRGNYTCVVENKFG-SIRQTYTLDVLER--------SPHRPILQAGLP--ANQ 232
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVP--PIVKIPSQLIGAHEGQQ 118
GS+V C P I W + + + P ++K E +
Sbjct: 233 TAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEV 292
Query: 119 LVLECISEA 127
L L ++
Sbjct: 293 LSLHNVTFE 301
Score = 44.2 bits (104), Expect = 4e-06
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRC-AASGSPPPSIMWRREGGEMITNS 95
+ +P ++ G V + C G P +W ++G ++ +
Sbjct: 5 AEVPGPEPGQQ--EQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSE 54
Score = 31.1 bits (70), Expect = 0.096
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 100 VPPIVKIPSQLIGAHEGQQLVLECISEA-YPKSVNYWTREKGDMIANGKT 148
VP + + G + L C P W ++ ++ + +
Sbjct: 7 VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERV 56
Score = 27.7 bits (61), Expect = 1.8
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
V+ E G Y C+A N G L+V
Sbjct: 296 HNVTFEDAGEYTCLAGNSIG---FSHHSAWLVVL 326
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 65.2 bits (159), Expect = 6e-14
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 15/101 (14%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
SR G Y+C+A N + +VS L V + D P SD+M
Sbjct: 77 GRKSRPDEGVYVCVARNYLGEAVSHDASLEVA------------ILRDDFRQNP--SDVM 122
Query: 62 VREGSNVSMRC-AASGSPPPSIMWRREGGEMITNSFNNTVP 101
V G M C G P P+I W+++G + T+
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR 163
Score = 53.3 bits (128), Expect = 2e-09
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
PP I+++P SD++V +G ++ C A G P P+I W + G + T+
Sbjct: 7 DFPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDK 54
Score = 28.6 bits (64), Expect = 0.70
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+ G Y+C+ +N V S+ L V
Sbjct: 172 TRKSDAGKYVCVGTNMVGERESEVAELTVL 201
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 66.4 bits (162), Expect = 7e-14
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 16/97 (16%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+V G Y C A++ + K + L ++ P + T
Sbjct: 68 KDVKLSDSGRYDCEAASRIG-GHQKSMYLDIE-------------YAPKFISNQT--IYY 111
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN 98
EG+ +++ C +PP SI WRR+ + + N
Sbjct: 112 SWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTN 148
Score = 46.3 bits (110), Expect = 7e-07
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 59 DIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQL 110
+ E V++ C A G P P I W+R + ++ +++ Q
Sbjct: 9 NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Score = 29.0 bits (65), Expect = 0.56
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI 143
P I+++ ++ +E Q+ L C +E P W R
Sbjct: 2 PHIIQLKNET--TYENGQVTLVCDAEGEPIPEITWKRAVDGFT 42
Score = 28.6 bits (64), Expect = 0.83
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
S G Y C A+N + + + +L +
Sbjct: 163 APTSDNDFGRYNCTATNHI-GTRFQEYILALA 193
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 64.8 bits (158), Expect = 9e-14
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 5 SREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVRE 64
+ Y C+ASN V +S L V + P I P +V
Sbjct: 72 TPRDEAIYECVASNNVG-EISVSTRLTVLREDQIP------RGFPTIDMGPQ--LKVVER 122
Query: 65 GSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV 100
+M CAASG+P P I W ++ + T++ N +
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRI 158
Score = 54.4 bits (131), Expect = 6e-10
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF 96
T PP P D G S C A+G P P I+W ++G ++ F
Sbjct: 2 TGETPPRFTRTP--VDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRF 52
Score = 29.8 bits (67), Expect = 0.27
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+ G Y C+A+N S L V+
Sbjct: 172 EQSEESDQGKYECVATNSAGTRYSAPANLYVR 203
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 65.9 bits (160), Expect = 1e-13
Identities = 20/180 (11%), Positives = 37/180 (20%), Gaps = 51/180 (28%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ V+R G Y C +S S+ ++ + I +S D
Sbjct: 295 SSVARNDTGYYTCSSSK----HPSQSALVTIV-------------EKGFINATNSSEDYE 337
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITN--------------------------- 94
+ + P W
Sbjct: 338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHA 397
Query: 95 -----SFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKTP 149
F ++ Q++ E C S+ YP W + +
Sbjct: 398 ENDDAQFTKMFTLNIRRKPQVL--AEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEI 455
Score = 61.3 bits (148), Expect = 6e-12
Identities = 17/119 (14%), Positives = 33/119 (27%), Gaps = 24/119 (20%)
Query: 3 EVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMV 62
+ G Y+ A N +K L ++ P + +
Sbjct: 384 CNHKHQPGEYIFHAENDDA-QFTKMFTLNIRR-------------KPQV----------L 419
Query: 63 REGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVL 121
E S C + G P PS W++ + + T + ++ + L
Sbjct: 420 AEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTL 478
Score = 57.0 bits (137), Expect = 2e-10
Identities = 17/193 (8%), Positives = 43/193 (22%), Gaps = 65/193 (33%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
+ C A N + ++ + + P T + ++
Sbjct: 198 LHELFGTDIRCCARNELGRECTRLFTIDLN-------------QTPQT----TLPQLFLK 240
Query: 64 EGSNVSMRCAASG-SPPPSIMWRREGGEMI------------------------------ 92
G + +RC A + + W E +
Sbjct: 241 VGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN 300
Query: 93 ---------TNSFNNT------VPPIVKIPS--QLIGAHEGQQLVLECISEAYPKSVNYW 135
+ + + + + + + ++ +AYP+ W
Sbjct: 301 DTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTW 360
Query: 136 TREKGDMIANGKT 148
T + K
Sbjct: 361 TFSRKSFPCEQKG 373
Score = 54.7 bits (131), Expect = 1e-09
Identities = 16/175 (9%), Positives = 35/175 (20%), Gaps = 55/175 (31%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+++ G YL + + + + ++
Sbjct: 108 LKMTETQAGEYLLFIQSEAT-NYTILFTVSIR-------------NTLLYTLRR--PYFR 151
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREG--------------------------------- 88
E ++ C + P P + W
Sbjct: 152 KMENQ-DALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCA 210
Query: 89 ----GEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY-WTRE 138
G T F + + + G+ L + C + W E
Sbjct: 211 RNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELE 265
Score = 52.0 bits (124), Expect = 7e-09
Identities = 17/184 (9%), Positives = 45/184 (24%), Gaps = 50/184 (27%)
Query: 3 EVSREHMGAYLCI----ASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSS 58
E + + C+ +N S ++ + + + + ++
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCAL-RPQSSGTVYE---AA 56
Query: 59 DIMVREGSNVSMRCAASGSPPPSIMWRREGGEMI-------------------------- 92
+ V ++++++ S +W + +
Sbjct: 57 AVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAG 116
Query: 93 ------TNSFNNT---------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR 137
+ N + + E Q L CISE+ P+ + W
Sbjct: 117 EYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVL 175
Query: 138 EKGD 141
Sbjct: 176 CDSQ 179
Score = 32.4 bits (73), Expect = 0.047
Identities = 5/52 (9%), Positives = 13/52 (25%), Gaps = 1/52 (1%)
Query: 100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKTPFQ 151
V + + + L+ + +A W + + Q
Sbjct: 48 SSGTVYEAAAVE-VDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQ 98
Score = 28.9 bits (64), Expect = 0.63
Identities = 5/32 (15%), Positives = 9/32 (28%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
C A N + + + I+L
Sbjct: 479 NMSEAIKGFLVKCCAYNSL-GTSCETILLNSP 509
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 65.1 bits (158), Expect = 2e-13
Identities = 28/191 (14%), Positives = 43/191 (22%), Gaps = 65/191 (34%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ E G Y C+ S S I L V P +
Sbjct: 84 FGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL-------------AKPQN--TAEVQKVQ 128
Query: 62 VREGSNVSMRC-AASGSPPPSIMWRREGGEM-----ITNSFNNTV--------------- 100
+ RC + G PP I W + G M + + TV
Sbjct: 129 LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVD 188
Query: 101 ----------------------------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSV 132
P + + L C + + P+
Sbjct: 189 GKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPT 248
Query: 133 NY-WTREKGDM 142
Y W+ G +
Sbjct: 249 GYNWSTTMGPL 259
Score = 56.3 bits (135), Expect = 2e-10
Identities = 11/93 (11%), Positives = 22/93 (23%), Gaps = 16/93 (17%)
Query: 1 MTEVSREHMGAYLCIASN-GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
+ S+ C + + L V P + +
Sbjct: 181 LVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYY--------------PPEVSISGYDN 226
Query: 60 IMVREGSNVSMRCAASGSPPP-SIMWRREGGEM 91
+ ++ C A +P P W G +
Sbjct: 227 NWYLGQNEATLTCDARSNPEPTGYNWSTTMGPL 259
Score = 37.0 bits (85), Expect = 0.001
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Query: 58 SDIMVREGSNVSMRCAASGSPPP-----SIMWRREGGEMITNSFNNTVPPIVKIPSQL 110
+ + G +V++ C + W R G F+ T P +L
Sbjct: 8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRL 65
Score = 29.3 bits (65), Expect = 0.39
Identities = 4/29 (13%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIV 32
V + +C +N + + + + V
Sbjct: 275 VDKPINTTLICNVTNAL-GARQAELTVQV 302
Score = 29.3 bits (65), Expect = 0.40
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Query: 100 VPPIVKIPSQLIGAHEGQQLVLECISE-AYPKSVNYWTREKGDMIANGKTP 149
P Q + + C+S P + W + G M + P
Sbjct: 116 AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVP 166
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 64.7 bits (157), Expect = 2e-13
Identities = 18/177 (10%), Positives = 47/177 (26%), Gaps = 46/177 (25%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+T ++ G Y C ++ +R L + + + I
Sbjct: 55 LTNLTGLDTGEYFCTHNDSRGLETDERKRLYIF---------VPDPTVGFLPNDAEELFI 105
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRRE--------------------------------G 88
+ E + +++ C + P + +
Sbjct: 106 FLTEITEITIPCRVTD-PQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGD 164
Query: 89 GEMITNSFNNTV----PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGD 141
E+ ++++ V + + +G+ + L CI WT + +
Sbjct: 165 REVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKE 221
Score = 32.4 bits (73), Expect = 0.042
Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 1/33 (3%)
Query: 2 TEVSREHMGAYLCIASNGV-PPSVSKRIMLIVQ 33
E G Y C + V K I + V
Sbjct: 247 PSAELEDSGTYTCNVTESVNDHQDEKAINITVV 279
Score = 30.1 bits (67), Expect = 0.24
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 55 PTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
P ++++ S + C+ S ++W R E
Sbjct: 5 PPGPELVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEM 41
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 63.4 bits (154), Expect = 3e-13
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 12/102 (11%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ--------CQYFSKLYIYTSSMPPDILD 53
E + G Y+ +G K + L Q Q + I + +
Sbjct: 64 NEPTPNDKGKYVMELFDGKT-GHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG 122
Query: 54 YPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
P + ++EG +++ C G PPP + W + + + +
Sbjct: 123 LP--DVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALAQT 161
Score = 28.3 bits (63), Expect = 0.85
Identities = 3/40 (7%), Positives = 10/40 (25%), Gaps = 10/40 (25%)
Query: 59 DIMVREGSNVSMRCAA----------SGSPPPSIMWRREG 88
+ +++ ++ A + W G
Sbjct: 2 SSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNG 41
Score = 27.5 bits (61), Expect = 1.5
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 1 MTEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
+ VS G Y + N G S + + V
Sbjct: 178 INGVSTADSGKYGLVVKNKYG---SETSDFTVSVF 209
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 62.7 bits (152), Expect = 3e-13
Identities = 13/94 (13%), Positives = 26/94 (27%), Gaps = 24/94 (25%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ E Y+C + VQ +SD
Sbjct: 73 KNLKIEDSDTYICEVEDQK---------EEVQLLV---------------FGLTANSDTH 108
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ +G ++++ + PS+ R G+ I
Sbjct: 109 LLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG 142
Score = 45.0 bits (106), Expect = 1e-06
Identities = 19/142 (13%), Positives = 30/142 (21%), Gaps = 55/142 (38%)
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGE----------------------------- 90
++ ++G V + C AS W+
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 91 ------MITN------------------SFNNTVPPIVKIPSQLIGAHEGQQLVLECISE 126
+I N V + + +GQ L L S
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL--LQGQSLTLTLESP 122
Query: 127 AYPKSVNYWTREKGDMIANGKT 148
+G I GKT
Sbjct: 123 PGSSPSVQCRSPRGKNIQGGKT 144
Score = 42.3 bits (99), Expect = 1e-05
Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+++ + G + C V +I ++V
Sbjct: 148 SQLELQDSGTWTCTVLQNQ-KKVEFKIDIVVL 178
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 63.4 bits (154), Expect = 3e-13
Identities = 24/128 (18%), Positives = 40/128 (31%), Gaps = 12/128 (9%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
M V G Y C+ N S+ + L V + + P P ++
Sbjct: 76 MESVVPSDRGNYTCVVENKFG-SIRQTYTLDVLER--------SPHRPILQAGLP--ANQ 124
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQL-IGAHEGQQL 119
GS+V C P I W + + + P + + S + +L
Sbjct: 125 TAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRL 184
Query: 120 VLECISEA 127
L +SE
Sbjct: 185 RLANVSER 192
Score = 48.4 bits (115), Expect = 1e-07
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 44 TSSMPPDILDYP--TSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ P + V + V RC A+G+P PSI W + G E
Sbjct: 7 VDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH 60
Score = 27.6 bits (61), Expect = 1.5
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
VS G YLC A+N + K L V
Sbjct: 187 ANVSERDGGEYLCRATNFI-GVAEKAFWLSVH 217
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 63.0 bits (153), Expect = 5e-13
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 15/88 (17%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ G Y C+A N V +VS+ L + + D P D
Sbjct: 74 QGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA------------VLRDDFRVEP--KDTR 119
Query: 62 VREGSNVSMRC-AASGSPPPSIMWRREG 88
V +G + C G P P+++W ++G
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWIKDG 147
Score = 49.9 bits (119), Expect = 3e-08
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
P I+++P +D++V++ ++ C G P P+I W ++G + TN
Sbjct: 9 SPRIIEHP--TDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNE 54
Score = 31.8 bits (72), Expect = 0.054
Identities = 13/30 (43%), Positives = 13/30 (43%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
V G Y CIA N V S LIVQ
Sbjct: 177 VEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 63.4 bits (154), Expect = 5e-13
Identities = 23/188 (12%), Positives = 43/188 (22%), Gaps = 61/188 (32%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ ++ G Y C + S I L V+ P + ++
Sbjct: 56 RNATFKNTGTYRCTELEDPM-AGSTTIHLYVK-------------DPAHSW-NLLAQEVT 100
Query: 62 VREGSNVSMRCAASGSPP-PSIMWRREGGEMITNSFNNTV-------------------- 100
V EG + C + S+ REGG +
Sbjct: 101 VVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYV 160
Query: 101 -------------------------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYW 135
PP +K+ + G+ + C + N
Sbjct: 161 CKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVI 220
Query: 136 TREKGDMI 143
+ +
Sbjct: 221 LKRGDTKL 228
Score = 62.7 bits (152), Expect = 1e-12
Identities = 17/107 (15%), Positives = 29/107 (27%), Gaps = 11/107 (10%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ Y+C S S I L V PP I P S ++
Sbjct: 149 RKAKVLDSNTYVCKTMVNGRESTSTGIWLKVN---------RVHPEPPQIKLEP--SKLV 197
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPS 108
G + C+A+ + + + G + N+
Sbjct: 198 RIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKV 244
Score = 39.9 bits (93), Expect = 1e-04
Identities = 22/140 (15%), Positives = 39/140 (27%), Gaps = 45/140 (32%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV------- 100
P I P+ +++V G V++RC ++G S+ W T +
Sbjct: 4 APVIE--PSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRN 57
Query: 101 -------------------------------PPIVKIPSQLIGAHEGQQLVLECISEAYP 129
+ +Q + EGQ+ VL C+
Sbjct: 58 ATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPA 117
Query: 130 KSVNY-WTREKGDMIANGKT 148
+ RE G +
Sbjct: 118 LKDSVSLMREGGRQVLRKTV 137
Score = 30.3 bits (68), Expect = 0.19
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
V + G Y C+ASN V + + + V
Sbjct: 250 NAVDFQDAGIYSCVASNDV-GTRTATMNFQVV 280
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 63.8 bits (155), Expect = 6e-13
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 9/101 (8%)
Query: 2 TEVSREHMGAYLCIASNG-------VPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDY 54
E + G Y+ +G V S + Q + I + +
Sbjct: 169 NEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGL 228
Query: 55 PTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
P + ++EG +++ C G PPP + W + + ++
Sbjct: 229 P--DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDD 267
Score = 45.7 bits (108), Expect = 1e-06
Identities = 13/87 (14%), Positives = 21/87 (24%), Gaps = 6/87 (6%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
TE S++ G Y I + R+ L+ + + I T I
Sbjct: 66 TEFSKKDAGIYEVILKDDRG-KDKSRLKLVDE-----AFKELMMEVCKKIALSATDLKIQ 119
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREG 88
+ W G
Sbjct: 120 STAEGIQLYSFVTYYVEDLKVNWSHNG 146
Score = 42.6 bits (100), Expect = 1e-05
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPP-PSIMWRREGGEMITNS 95
P ++Y V NV ++C + I+W ++ E+ +
Sbjct: 7 GPHFVEYL---SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE 52
Score = 27.2 bits (60), Expect = 2.4
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
VS G Y + N G S + + V
Sbjct: 284 NGVSTADSGKYGLVVKNKYG---SETSDFTVSVF 314
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 63.2 bits (154), Expect = 7e-13
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 11/94 (11%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
V+ + Y A+N SVS L V+ + P L+ +
Sbjct: 67 ASVTDDDATVYQVRATNQGG-SVSGTASLEVE--------VPAKIHLPKTLEGM--GAVH 115
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
G VS++ SG P P I W++ + N
Sbjct: 116 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG 149
Score = 54.0 bits (130), Expect = 1e-09
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+M P + ++ VR SN ++ C +G P P + W R+G E+I +
Sbjct: 2 AMAPHFKEELR--NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG 49
Score = 29.7 bits (67), Expect = 0.35
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGK 147
+ P K + + L C +PK + W R+ ++IA+G
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGL 50
Score = 25.9 bits (57), Expect = 5.5
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
V R+ G Y+ A N K + L V
Sbjct: 168 VERKDAGFYVVCAKNRF-GIDQKTVELDVA 196
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 63.5 bits (154), Expect = 8e-13
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 22/105 (20%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
T + G Y + SN + + + V P+IL Y
Sbjct: 380 TRLKGTEGGTYTFLVSNSDV-NAAIAFNVYVN-------------TKPEILTYD------ 419
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKI 106
N ++C A+G P P+I W G S + + +
Sbjct: 420 --RLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTL 462
Score = 59.7 bits (144), Expect = 2e-11
Identities = 23/191 (12%), Positives = 46/191 (24%), Gaps = 57/191 (29%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPT-SSDI 60
+ G ++C A+N S + L V I +P ++ +
Sbjct: 278 SSARVNDSGVFMCYANNTFG-SANVTTTLEVVD-------------KGFINIFPMINTTV 323
Query: 61 MVREGSNVSMRCAASGSPPPS-IMWRREGGEM-----------------------ITN-- 94
V +G NV + P P W +T
Sbjct: 324 FVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLK 383
Query: 95 ----------------SFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTRE 138
+ V +++ +L+C++ +P+ W
Sbjct: 384 GTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFC 443
Query: 139 KGDMIANGKTP 149
G +
Sbjct: 444 PGTEQRCSASV 454
Score = 57.8 bits (139), Expect = 1e-10
Identities = 26/193 (13%), Positives = 51/193 (26%), Gaps = 66/193 (34%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ + G Y C +G+ S I + V+ P + + +
Sbjct: 85 EKAEATNTGKYTCTNKHGL----SNSIYVFVR-------------DPAKL--FLVDRSLY 125
Query: 62 VREGSNVSMRCAASGSPPPSIMWRR----------------------------------- 86
+E ++ +RC + + +
Sbjct: 126 GKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLH 185
Query: 87 -----EGGEMITNSFNNTV------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY- 134
EG +++ F V P+V + EG++ + C + SV
Sbjct: 186 CSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYST 245
Query: 135 WTREKGDMIANGK 147
W RE K
Sbjct: 246 WKRENSQTKLQEK 258
Score = 53.9 bits (129), Expect = 2e-09
Identities = 23/197 (11%), Positives = 49/197 (24%), Gaps = 63/197 (31%)
Query: 7 EHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGS 66
H C +S++ +L V+ P + + + ++REG
Sbjct: 179 YHRLCLHCSVDQEGKSVLSEKFILKVR---------PAFKAVPVVS--VSKASYLLREGE 227
Query: 67 NVSMRCAASGSPPP-SIMWRREGGEM---------------------------------- 91
++ C W+RE +
Sbjct: 228 EFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGV 287
Query: 92 ----ITNSFNNT---------VPPIVKIPSQ---LIGAHEGQQLVLECISEAYPKSVNY- 134
N+F + + I + ++G+ + L EA+PK +
Sbjct: 288 FMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQ 347
Query: 135 WTREKGDMIANGKTPFQ 151
W + +
Sbjct: 348 WIYMNRTFTDKWEDYPK 364
Score = 46.6 bits (110), Expect = 6e-07
Identities = 20/173 (11%), Positives = 41/173 (23%), Gaps = 47/173 (27%)
Query: 7 EHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGS 66
+LC+ + + + PP I P SD++VR G
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSV-------SPGEPS---PPSIH--PGKSDLIVRVGD 52
Query: 67 NVSMRCAASGSPPPSIMWRREGGEMITNSFNNT--------------------------- 99
+ + C G + W E + + N
Sbjct: 53 EIRLLCTDPG----FVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIY 108
Query: 100 ----VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKT 148
P + + + + E ++ C + +G +
Sbjct: 109 VFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLR 161
Score = 30.4 bits (68), Expect = 0.19
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+ +H G C A N V S +
Sbjct: 479 DSSAFKHNGTVECKAYNDV-GKTSAYFNFAFK 509
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 63.2 bits (153), Expect = 1e-12
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 18/97 (18%)
Query: 2 TEVSREHMGAYLCIASNGV---PPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSS 58
S + G Y+C+A + V +++ ++ + + P I
Sbjct: 630 KNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER-------------VAPTITGNLE-- 674
Query: 59 DIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ G ++ + C ASG+PPP IMW ++ ++ +S
Sbjct: 675 NQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS 711
Score = 61.3 bits (148), Expect = 5e-12
Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 17/114 (14%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ Y C A N V + I V P+I P D+
Sbjct: 518 VIQAANVSALYKCEAVNKVG-RGERVISFHVT-------------RGPEITLQP---DMQ 560
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHE 115
E +VS+ C A S ++ W + G + + P+ K L +
Sbjct: 561 PTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNA 614
Score = 59.8 bits (144), Expect = 2e-11
Identities = 34/191 (17%), Positives = 52/191 (27%), Gaps = 56/191 (29%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
V+R G Y C AS+G+ + + V P S +
Sbjct: 295 DGVTRSDQGLYTCAASSGLM-TKKNSTFVRVH------------EKPFVAFGSGMESLVE 341
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGE----------------------------MIT 93
G V + G PPP I W + G ++T
Sbjct: 342 ATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILT 401
Query: 94 NSFNNT-----------VPPIVK---IPSQLIGAHEGQQLVLECISEAYPKSVNY-WTRE 138
N + VPP + + S + G L C A P + W +
Sbjct: 402 NPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQ 461
Query: 139 KGDMIANGKTP 149
+ AN +
Sbjct: 462 LEEECANEPSQ 472
Score = 55.9 bits (134), Expect = 4e-10
Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 14/119 (11%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI- 60
EVS G Y I +N + + ++ + PP I + S +
Sbjct: 386 MEVSERDTGNYTVILTNPIS-KEKQSHVVSLVVYV-----------PPQIGEKSLISPVD 433
Query: 61 MVREGSNVSMRCAASGSPPP-SIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQ 118
+ G+ ++ C PPP I W + E N + V P + + E Q
Sbjct: 434 SYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQ 492
Score = 52.5 bits (125), Expect = 6e-09
Identities = 28/193 (14%), Positives = 43/193 (22%), Gaps = 56/193 (29%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+V GAY C + + + Y S + D I
Sbjct: 91 PKVIGNDTGAYKCFYRETDL-ASVIYVYVQD----------YRSPFIASVSDQHGVVYIT 139
Query: 62 VREGSNVSMRCAASGSPPPSIMWRR-----------------EGGEMITN---------- 94
+ V + C S S + R + G I +
Sbjct: 140 ENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVF 199
Query: 95 ------------SFNNTV------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWT 136
V +V PS I G++LVL C + +
Sbjct: 200 CEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN 259
Query: 137 REKGDMIANGKTP 149
E K
Sbjct: 260 WEYPSSKHQHKKL 272
Score = 46.7 bits (110), Expect = 6e-07
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 12/85 (14%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ + G C A S + ++V D++ P S I
Sbjct: 187 IPSYMISYAGMVFCEAKINDE-SYQSIMYIVVV----------VGYRIYDVVLSP-SHGI 234
Query: 61 MVREGSNVSMRCAASGSPPPSIMWR 85
+ G + + C A I +
Sbjct: 235 ELSVGEKLVLNCTARTELNVGIDFN 259
Score = 45.9 bits (108), Expect = 1e-06
Identities = 15/181 (8%), Positives = 37/181 (20%), Gaps = 69/181 (38%)
Query: 8 HMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSN 67
+ +LC+ + + V P + + ++ +
Sbjct: 8 AVALWLCVETRAASVGLPS-----VSLD------------LPRLS--IQKDILTIKANTT 48
Query: 68 VSMRCAASGSPPPSIMWRREGGEMITNSFNN----------------------------- 98
+ + C G +W
Sbjct: 49 LQITC--RGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYR 106
Query: 99 ---------------TVPPIVKIPSQ----LIGAHEGQQLVLECISEAYPKSVNYWTREK 139
P I + Q I ++ + +V+ C+ +V+ R
Sbjct: 107 ETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYP 166
Query: 140 G 140
Sbjct: 167 E 167
Score = 30.5 bits (68), Expect = 0.22
Identities = 6/45 (13%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMI 143
T P + + + E + + L C ++ W + +
Sbjct: 548 TRGPEITLQPDMQ-PTEQESVSLWCTADRSTFENLTWYKLGPQPL 591
Score = 30.1 bits (67), Expect = 0.29
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
V +E G Y C A + + I++
Sbjct: 725 RRVRKEDEGLYTCQACSVL-GCAKVEAFFIIE 755
Score = 27.0 bits (59), Expect = 2.6
Identities = 6/57 (10%), Positives = 13/57 (22%), Gaps = 5/57 (8%)
Query: 95 SFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKTPFQ 151
S + +P + L L + C + W + +
Sbjct: 26 SVSLDLPRLSIQKDILT-IKANTTLQITCRGQRDLD----WLWPNNQSGSEQRVEVT 77
Score = 27.0 bits (59), Expect = 2.8
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPK 130
V P + + G+ + + C + P
Sbjct: 665 VAPTITGNLENQTTSIGESIEVSCTASGNPP 695
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 59.1 bits (143), Expect = 2e-12
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
PP I+++P SD++V +G ++ C A G P P+I W + G + T+
Sbjct: 8 FPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDK 54
Score = 40.2 bits (94), Expect = 2e-05
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
SR G Y+C+A N + +VS L V
Sbjct: 79 KSRPDEGVYVCVARNYLGEAVSHDASLEVA 108
Score = 25.9 bits (57), Expect = 3.1
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 100 VPP-IVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKTP 149
PP IV+ PS LI +G+ L C +E P W + + + P
Sbjct: 8 FPPRIVEHPSDLI-VSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDP 57
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 62.0 bits (150), Expect = 3e-12
Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 16/103 (15%)
Query: 2 TEVSREHMGAYLCIASN---GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSS 58
+V+ E G Y C+ + G ++++ I L ++ + P I+
Sbjct: 185 HDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKK--------KEETIPVIISPL--K 234
Query: 59 DIMVREGSNVSMRCAA---SGSPPPSIMWRREGGEMITNSFNN 98
I GS +++ C +G+P +++W I +++
Sbjct: 235 TISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPG 277
Score = 46.6 bits (110), Expect = 5e-07
Identities = 24/202 (11%), Positives = 44/202 (21%), Gaps = 72/202 (35%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
+E G Y+C N I L V D S ++
Sbjct: 88 ALQEDSGTYVCTTRNASY-CDKMSIELRVF-------------ENTDAFLPFISYPQILT 133
Query: 64 EGSNVSMRCA-----ASGSPPPSIMWRREGGEM--------------------------- 91
++ + C I W ++ +
Sbjct: 134 LSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAG 193
Query: 92 -----ITNSFNNT------------------VPPIVKIPSQLIGAHEGQQLVLEC---IS 125
+T + P++ P + I A G +L + C +
Sbjct: 194 YYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLG 253
Query: 126 EAYPKSVNYWTREKGDMIANGK 147
P + W I +
Sbjct: 254 TGTPLTTMLWWTANDTHIESAY 275
Score = 39.7 bits (92), Expect = 1e-04
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 58 SDIMVREGSNVSMRCA-------ASGSPPPSIMWRREGGEMITNS 95
EG V++RC AS SP ++ W +
Sbjct: 26 KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPG 70
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 61.2 bits (148), Expect = 3e-12
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 12/93 (12%)
Query: 1 MTEVSREHMGAYLCIASNGV-PPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
+ ++ ++ C A+ V + K ++ Y P + + +
Sbjct: 146 LKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY-----------GPRLDERDCPGN 194
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEMI 92
E S + C A G+P P + ++G +
Sbjct: 195 WTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL 227
Score = 49.7 bits (118), Expect = 4e-08
Identities = 20/182 (10%), Positives = 35/182 (19%), Gaps = 52/182 (28%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
E C G S + + S P + +
Sbjct: 65 SVTAEDEGTQRLTCAVILG-NQSQETLQTVTIY------------SFPAPNV---ILTKP 108
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREG--GEMITNSFNNT------------------- 99
V EG+ V+++C A ++ G T
Sbjct: 109 EVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQ 168
Query: 100 -------------VPPIVKIPS--QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIA 144
P + E Q C + P ++ +
Sbjct: 169 LIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP 228
Query: 145 NG 146
G
Sbjct: 229 IG 230
Score = 37.3 bits (86), Expect = 8e-04
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
V+R+ G YLC A + V++ + + V
Sbjct: 235 VTRDLEGTYLCRARSTQ-GEVTREVTVNVL 263
Score = 27.7 bits (61), Expect = 1.3
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 8/74 (10%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPS---IMWRREGGEMITNSFNNTVPPIV 104
PP ++ + + ++ C+ G P S + +
Sbjct: 6 PPQLVSPRV-----LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSA 60
Query: 105 KIPSQLIGAHEGQQ 118
K + EG Q
Sbjct: 61 KASVSVTAEDEGTQ 74
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 61.3 bits (148), Expect = 4e-12
Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 16/96 (16%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ H + CI + + + + L VQ P++ +
Sbjct: 198 LVPSREAHQQSLACIVNYHMDR-FKESLTLNVQY-------------EPEVTIEGFDGNW 243
Query: 61 MVREGSNVSMRCAASGSPPPS-IMWRREGGEMITNS 95
+ +V + C A +PP + W G +
Sbjct: 244 -YLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV 278
Score = 60.5 bits (146), Expect = 9e-12
Identities = 23/191 (12%), Positives = 42/191 (21%), Gaps = 57/191 (29%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ + E G Y+C + + ++ L V
Sbjct: 97 SRLELEDEGVYICEFATFPTGNRESQLNLTV----------MAKPTNWIEGTQAVLRAKK 146
Query: 62 VREGSNVSMRC-AASGSPPPSIMWRREGGEMITNSFNN---------------------- 98
++ + C +A+G PP + W
Sbjct: 147 GQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQ 206
Query: 99 ----------------------TVPPIVKI-PSQLIGAHEGQQLVLECISEAYPKSVNY- 134
P V I + + L C ++A P + Y
Sbjct: 207 QSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYH 266
Query: 135 WTREKGDMIAN 145
WT G +
Sbjct: 267 WTTLNGSLPKG 277
Score = 34.0 bits (77), Expect = 0.012
Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPP----SIMWRREGGEMITNSFNNTVPPI 103
P ++ + G++V + C+ + P + W++ N
Sbjct: 14 PSQVVQVN--DSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMG 71
Query: 104 VKIPS 108
V + +
Sbjct: 72 VSVLA 76
Score = 30.1 bits (67), Expect = 0.22
Identities = 6/30 (20%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
++ G Y+C A+N + + S ++ + +
Sbjct: 291 INYSLAGTYICEATNPI-GTRSGQVEVNIT 319
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 61.2 bits (148), Expect = 5e-12
Identities = 12/90 (13%), Positives = 22/90 (24%), Gaps = 17/90 (18%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ V+R G Y C +S S+ ++ + I +S D
Sbjct: 295 SSVARNDTGYYTCSSSK----HPSQSALVTIV-------------EKGFINATNSSEDYE 337
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEM 91
+ + P W
Sbjct: 338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKSF 367
Score = 54.3 bits (130), Expect = 1e-09
Identities = 16/180 (8%), Positives = 42/180 (23%), Gaps = 62/180 (34%)
Query: 3 EVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMV 62
+ S +Y ++ + + L Q + + ++ + V
Sbjct: 21 DSSVGKSSSYPMVSESPEDLGCA----LRPQ-------------SSGTVYE---AAAVEV 60
Query: 63 REGSNVSMRCAASGSPPPSIMWRREGGEMITNSF-------------------------- 96
++++++ S +W + +
Sbjct: 61 DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLL 120
Query: 97 --NNTV-------------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGD 141
+ + + E Q L CISE+ P+ + W
Sbjct: 121 FIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVLCDSQ 179
Score = 50.8 bits (121), Expect = 2e-08
Identities = 8/98 (8%), Positives = 24/98 (24%), Gaps = 17/98 (17%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+++ G YL + + + + ++
Sbjct: 108 LKMTETQAGEYLLFIQSEAT-NYTILFTVSIR-------------NTLLYTLRR--PYFR 151
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT 99
E ++ C + P P + W + + +
Sbjct: 152 KMENQ-DALVCISESVPEPIVEWVLCDSQGESCKEESP 188
Score = 50.4 bits (120), Expect = 2e-08
Identities = 18/193 (9%), Positives = 44/193 (22%), Gaps = 65/193 (33%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
+ C A N + ++ ++T + T + ++
Sbjct: 198 LHELFGTDIRCCARNELGRECTR---------------LFTIDLNQTPQ--TTLPQLFLK 240
Query: 64 EGSNVSMRC-AASGSPPPSIMWRREGGEMI------------------------------ 92
G + +RC A + + W E +
Sbjct: 241 VGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN 300
Query: 93 ---------TNSFNNT------VPPIVKIP--SQLIGAHEGQQLVLECISEAYPKSVNYW 135
+ + + + S+ + ++ +AYP+ W
Sbjct: 301 DTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTW 360
Query: 136 TREKGDMIANGKT 148
T + K
Sbjct: 361 TFSRKSFPCEQKG 373
Score = 34.3 bits (78), Expect = 0.011
Identities = 5/52 (9%), Positives = 13/52 (25%), Gaps = 1/52 (1%)
Query: 100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKTPFQ 151
V + + + L+ + +A W + + Q
Sbjct: 48 SSGTVYEAAAVE-VDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQ 98
Score = 30.4 bits (68), Expect = 0.20
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+ G Y+ A N +K L ++
Sbjct: 383 FCNHKHQPGEYIFHAENDD-AQFTKMFTLNIR 413
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 60.1 bits (145), Expect = 1e-11
Identities = 24/184 (13%), Positives = 41/184 (22%), Gaps = 66/184 (35%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ G Y C SNG+ + I + V P L +
Sbjct: 62 EKAEATRTGTYTCSNSNGL----TSSIYVFV--------------RDPAKLFLV-GLPLF 102
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV--------------------- 100
+E S+ +RC + G+ +
Sbjct: 103 GKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVR 162
Query: 101 -------------------------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY- 134
P+V +P +G + C + SVN
Sbjct: 163 CAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSM 222
Query: 135 WTRE 138
W +
Sbjct: 223 WLKM 226
Score = 56.3 bits (135), Expect = 2e-10
Identities = 11/93 (11%), Positives = 25/93 (26%), Gaps = 12/93 (12%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
H C A S + L V+ P + + +++
Sbjct: 153 KRAYHRLCVRCAAQRDGTWLHSDKFTLKVR---------EAIKAIPVVS--VPETSHLLK 201
Query: 64 EGSNVSMRCAASGSPPP-SIMWRREGGEMITNS 95
+G ++ C + MW + + +
Sbjct: 202 KGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIA 234
Score = 45.9 bits (108), Expect = 9e-07
Identities = 19/129 (14%), Positives = 33/129 (25%), Gaps = 30/129 (23%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGS------PPPSIMWRREGGEMITNSF----- 96
PP I P S+++V G +S+ C + M + E I
Sbjct: 12 PPSIH--PAQSELIVEAGDTLSLTCIDPDFVRWTFKTYFNEMVENKKNEWIQEKAEATRT 69
Query: 97 -------NNT----------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREK 139
+N P + + + E ++ C S
Sbjct: 70 GTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECD 129
Query: 140 GDMIANGKT 148
G + T
Sbjct: 130 GKSLPTDLT 138
Score = 28.5 bits (63), Expect = 0.69
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+ + G ++C A+N S + L V
Sbjct: 257 SSARVDDSGVFMCYANNTF-GSANVTTTLKVV 287
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 59.5 bits (143), Expect = 1e-11
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 7/107 (6%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+T V + G Y C + + S + T P + + T+ +
Sbjct: 94 LTHVHPQDGGRYWCQVAQWSIRTEFGLDAK-------SVVLKVTGHTPSNNVHVSTAEVV 146
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIP 107
V EG++++M C + ++ W P K
Sbjct: 147 QVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQ 193
Score = 39.5 bits (91), Expect = 1e-04
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 56 TSSDIMVREGSNVSMRC---AASGSPPPSIMWRREGG 89
T +++ V G V + C A+ + PP I W +
Sbjct: 8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGAS 44
Score = 33.3 bits (75), Expect = 0.017
Identities = 11/131 (8%), Positives = 34/131 (25%), Gaps = 11/131 (8%)
Query: 18 NGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREG-----SNVSM-- 70
P +K Q ++ + S D+ + + ++V
Sbjct: 42 GASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQD 101
Query: 71 ----RCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISE 126
C + + ++ + + + ++++ EG + + C
Sbjct: 102 GGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCT 161
Query: 127 AYPKSVNYWTR 137
+ W
Sbjct: 162 DCANANVTWYT 172
Score = 30.3 bits (67), Expect = 0.22
Identities = 3/32 (9%), Positives = 7/32 (21%), Gaps = 1/32 (3%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32
+ G C + G + +
Sbjct: 217 IRAAKITDAGRVWCELATGQ-GELDADRSSTI 247
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 59.9 bits (144), Expect = 1e-11
Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 16/103 (15%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKR---IMLIVQCQYFSKLYIYTSSMPPDILDYPTS 57
+ ++ ++ C A+ V + + L V P + +
Sbjct: 331 LKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL-------------YGPRLDERDCP 377
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV 100
+ E S + C A G+P P + ++G + + TV
Sbjct: 378 GNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTV 420
Score = 49.5 bits (117), Expect = 7e-08
Identities = 20/179 (11%), Positives = 36/179 (20%), Gaps = 52/179 (29%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
E C G S + + S P + + V
Sbjct: 253 AEDEGTQRLTCAVILG-NQSQETLQTVTIY------------SFPAPNV---ILTKPEVS 296
Query: 64 EGSNVSMRCAASGSPPPSIMWRREG--GEMITNSFNNT---------------------- 99
EG+ V+++C A ++ G T
Sbjct: 297 EGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIH 356
Query: 100 ----------VPPIV--KIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG 146
P + + E Q C + P ++ + G
Sbjct: 357 KNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG 415
Score = 38.3 bits (88), Expect = 4e-04
Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 37/128 (28%)
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWR-------------------------------- 85
S +++ G +V + C+ S P +
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCY 66
Query: 86 -REGGEMITNSFNNTV---PPIVKIPSQLIGAHEGQQLVLECISEA-YPKSVNYWTREKG 140
T TV P V++ G+ L L C E P++ +G
Sbjct: 67 SNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRG 126
Query: 141 DMIANGKT 148
+ +
Sbjct: 127 EKELKREP 134
Score = 37.2 bits (85), Expect = 0.001
Identities = 15/121 (12%), Positives = 31/121 (25%), Gaps = 10/121 (8%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ H + C + + + L +L + P L P
Sbjct: 146 VLVRRDHHGANFSCRTELDL---RPQGLELFENTSAPYQLQTFVLPATPPQLVSP----R 198
Query: 61 MVREGSNVSMRCAASGSPPPS---IMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQ 117
++ + ++ C+ G P S + + K + EG
Sbjct: 199 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGT 258
Query: 118 Q 118
Q
Sbjct: 259 Q 259
Score = 36.8 bits (84), Expect = 0.001
Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 18/99 (18%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ + +C ++ + + L V P+ +
Sbjct: 52 YELSNVQEDSQPMCYSNCPDG-QSTAKTFLTVY-------------WTPERV-ELAPLPS 96
Query: 61 MVREGSNVSMRCAASGSPPP---SIMWRREGGEMITNSF 96
G N+++RC G P +++ R E+
Sbjct: 97 WQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA 135
Score = 32.9 bits (74), Expect = 0.031
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
V+R+ G YLC A + V++ + + V
Sbjct: 417 SVTVTRDLEGTYLCRARSTQ-GEVTREVTVNVL 448
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 56.2 bits (136), Expect = 2e-11
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
SS PP IL P ++ + ++C A+G P P I W +EG
Sbjct: 5 SSGPPIILQGP--ANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRD 53
Score = 27.7 bits (62), Expect = 0.70
Identities = 9/46 (19%), Positives = 14/46 (30%)
Query: 101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANG 146
PPI+ +L+C + P V W +E
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRD 53
Score = 27.7 bits (62), Expect = 0.78
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
+ G Y C+A++ G S +L V
Sbjct: 67 KNLRISDTGTYTCVATSSSG---ETSWSAVLDVT 97
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 59.0 bits (142), Expect = 3e-11
Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 24/94 (25%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ E Y+C + + + L+V +SD
Sbjct: 72 KNLKIEDSDTYICEVEDQ-----KEEVQLLV-------------------FGLTANSDTH 107
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ +G ++++ + PS+ R G+ I
Sbjct: 108 LLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG 141
Score = 49.4 bits (117), Expect = 6e-08
Identities = 10/96 (10%), Positives = 30/96 (31%), Gaps = 2/96 (2%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYP-TSSD 59
++++ + G + C V +I ++V + +Y +P +
Sbjct: 146 VSQLELQDSGTWTCTVLQNQ-KKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTV 204
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ + + + S I + + E+
Sbjct: 205 EKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKR 240
Score = 42.1 bits (98), Expect = 2e-05
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPP 102
++ ++G V + C AS W+ I + + +
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTK 46
Score = 32.5 bits (73), Expect = 0.042
Identities = 12/53 (22%), Positives = 15/53 (28%), Gaps = 7/53 (13%)
Query: 96 FNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKT 148
F T + +GQ L L S +G I GKT
Sbjct: 98 FGLTANSDTHL-------LQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKT 143
Score = 30.9 bits (69), Expect = 0.15
Identities = 8/89 (8%), Positives = 16/89 (17%), Gaps = 29/89 (32%)
Query: 3 EVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMV 62
G + + + L+V M
Sbjct: 263 LPQYAGSGNLTLALEAKTG-KLHQEVNLVV----------------------------MR 293
Query: 63 REGSNVSMRCAASGSPPPSIMWRREGGEM 91
++ C G P +M +
Sbjct: 294 ATQLQKNLTCEVWGPTSPKLMLSLKLENK 322
Score = 26.3 bits (57), Expect = 5.1
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLI 31
V G + C+ S+ + I ++
Sbjct: 332 AVWVLNPEAGMWQCLLSDSGQVLLESNIKVL 362
Score = 25.5 bits (55), Expect = 9.0
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 109 QLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKTPF 150
+++ +G + L C + +W I + F
Sbjct: 2 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSF 43
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 56.6 bits (136), Expect = 8e-11
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 17/95 (17%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
T + +G Y C P +K+ +L V + P D
Sbjct: 89 TNLQLSDIGTYQCKVKKA-PGVANKKFLLTVL-------------VKPSGT--RCFVDGS 132
Query: 62 VREGSNVSMRC-AASGSPPPSIMWRREGGEMITNS 95
G++ ++C GS P W++ +
Sbjct: 133 EEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPT 167
Score = 33.1 bits (75), Expect = 0.022
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 4/38 (10%)
Query: 57 SSDIMVREGSNVSMRCAASGSP----PPSIMWRREGGE 90
I +G + C + SP P I W +
Sbjct: 7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSD 44
Score = 28.9 bits (64), Expect = 0.55
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
S E+ G Y C N V S + L V
Sbjct: 183 ASSEYSGTYSCTVQNRV-GSDQCMLRLDVV 211
Score = 27.3 bits (60), Expect = 1.8
Identities = 6/47 (12%), Positives = 9/47 (19%), Gaps = 1/47 (2%)
Query: 100 VPPIVKIPSQLIGAHEGQQLVLECISEA-YPKSVNYWTREKGDMIAN 145
V P G L+C + W +
Sbjct: 120 VKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMP 166
Score = 25.4 bits (55), Expect = 8.3
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 4/42 (9%)
Query: 104 VKIPSQLIGAHEGQQLVLECISEAYPKSVN----YWTREKGD 141
+ P Q I +G+ L C P+ W D
Sbjct: 3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSD 44
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 56.5 bits (136), Expect = 1e-10
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 17/99 (17%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
T+V + G Y C+ S G + KRI + V ++
Sbjct: 85 TDVKLQDAGVYRCMISYG--GADYKRITVKVN---------------APYNKINQRILVV 127
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV 100
S + C A G P ++W ++++ T
Sbjct: 128 DPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTN 166
Score = 33.1 bits (75), Expect = 0.019
Identities = 3/30 (10%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
++ + C P + L++
Sbjct: 182 INTTTNEIFYCTFRRLD-PEENHTAELVIP 210
Score = 32.3 bits (73), Expect = 0.034
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKT 148
P L+ + L C +E YPK+ WT +++ T
Sbjct: 116 PYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTT 163
Score = 29.2 bits (65), Expect = 0.49
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 60 IMVREGSNVSMRCAASGSPPPSIM-----WRREGGEMI 92
+V GSN+++ C + W E +I
Sbjct: 11 YVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNII 48
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 53.5 bits (129), Expect = 2e-10
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 36 YFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ + +++ IL P + V EG + C G P P++ W R+G + T++
Sbjct: 2 HHHHHHSSKTTLAARILTKP--RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA 59
Score = 28.1 bits (63), Expect = 0.47
Identities = 6/32 (18%), Positives = 9/32 (28%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+ V G Y + N L +Q
Sbjct: 75 SSVQASDEGNYSVVVENSE-GKQEAEFTLTIQ 105
Score = 26.9 bits (60), Expect = 1.6
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 93 TNSFNNTVPP-IVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGK 147
+S T+ I+ P + +EG+ C ++ P W R+ + + +
Sbjct: 6 HHSSKTTLAARILTKPRSMT-VYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSAR 60
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 52.7 bits (127), Expect = 5e-10
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ P I + G ++ + C ASG+PPP IMW ++ ++ +S
Sbjct: 8 RVAPTITGNL--ENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS 55
Score = 29.2 bits (66), Expect = 0.26
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
V +E G Y C A + + I++
Sbjct: 69 RRVRKEDEGLYTCQACSVL-GCAKVEAFFIIE 99
Score = 26.1 bits (58), Expect = 3.0
Identities = 6/48 (12%), Positives = 17/48 (35%)
Query: 100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGK 147
V P + + G+ + + C + P W ++ ++ +
Sbjct: 9 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG 56
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 52.8 bits (127), Expect = 5e-10
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
SS PP I P + V + C A+GSP P+I+WR++G + T
Sbjct: 5 SSGPPVIRQGP--VNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQD 53
Score = 28.2 bits (63), Expect = 0.64
Identities = 11/67 (16%), Positives = 17/67 (25%), Gaps = 18/67 (26%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
G Y CIAS G + + VQ + P +D
Sbjct: 67 RYAKLGDTGRYTCIASTPSG---EATWSAYIEVQ-------------EFGVPVQPPRPTD 110
Query: 60 IMVREGS 66
+ +
Sbjct: 111 PNLIPSA 117
Score = 27.0 bits (60), Expect = 1.5
Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKTPFQ 151
+ PP+++ VL C++ P W ++ G +++ + +
Sbjct: 6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKD-GVLVSTQDSRIK 57
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 52.3 bits (126), Expect = 6e-10
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEM 91
+PP I P SDI + EG +++ CA +G P P + W G ++
Sbjct: 3 GIPPKIEALP--SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKI 46
Score = 27.3 bits (61), Expect = 1.0
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
+V ++ G Y N G S S + + ++
Sbjct: 68 MDVQKQDGGLYTLSLGNEFG---SDSATVNIHIR 98
Score = 24.6 bits (54), Expect = 7.8
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPK 130
+PP ++ I EG+ L + C P
Sbjct: 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPT 34
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 51.9 bits (125), Expect = 9e-10
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
S PP D VREG +V M G P P + W R + +
Sbjct: 2 SKAPPTFKVSL--MDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQ 50
Score = 26.1 bits (58), Expect = 2.3
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
R G Y C A N G + L V+
Sbjct: 67 LAAERGDAGFYTCKAVNEYG---ARQCEARLEVR 97
Score = 25.3 bits (56), Expect = 4.9
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGK 147
PP K+ EGQ +++ + PK V W R + + + +
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQR 51
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 52.3 bits (125), Expect = 1e-09
Identities = 16/86 (18%), Positives = 22/86 (25%), Gaps = 3/86 (3%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPI 103
S + P G +V + C A GSP P I W EG
Sbjct: 17 RGSHMAGFVQAP--LSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGAR 74
Query: 104 VKIPSQLIGAHEGQQLVLECISEAYP 129
+ H+ + I
Sbjct: 75 LDRVHIHATYHQHAASTIS-IDTLVE 99
Score = 27.7 bits (61), Expect = 1.1
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 2 TEVSREHMGAYLCIASNGV 20
+ E G Y C ASN
Sbjct: 95 DTLVEEDTGTYECRASNDP 113
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 53.1 bits (127), Expect = 1e-09
Identities = 18/116 (15%), Positives = 33/116 (28%), Gaps = 35/116 (30%)
Query: 62 VREGSNVSMRCAASGSPPP--SIMWRREGGEMITNSFNNT-------------------- 99
GS + + C+ + S W + G + ++
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFL 69
Query: 100 ------------VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY-WTREKGDM 142
PP VK +EG+ +L C SE+ P ++ W +
Sbjct: 70 PEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSE 125
Score = 52.0 bits (124), Expect = 3e-09
Identities = 17/109 (15%), Positives = 27/109 (24%), Gaps = 20/109 (18%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
S + G Y C+ + + PP + +S I
Sbjct: 54 KVDSDDQWGEYSCVFLP----EPMGTANIQLH-------------GPPRVKAVKSSEHIN 96
Query: 62 VREGSNVSMRCAASGSPPP-SIMWRREGGEMITNSFNNTVPPIVKIPSQ 109
EG + C + PP W + N + SQ
Sbjct: 97 --EGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143
Score = 28.1 bits (62), Expect = 0.99
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 7 EHMGAYLCIASNGVPPSVSKRIMLIVQ 33
G Y C ++ S I L V+
Sbjct: 157 ADPGQYRCNGTSSK-GSDQAIITLRVR 182
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 51.2 bits (123), Expect = 2e-09
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 43 YTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+S P L P D+ V+EG M C SG P P + W+ +G + +S
Sbjct: 4 GSSGFRPHFLQAP--GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDS 54
Score = 26.2 bits (58), Expect = 2.9
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
V+ G Y CIA+N G S + L+V
Sbjct: 71 EPVTSRDAGIYTCIATNRAG---QNSFSLELVVA 101
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 53.7 bits (128), Expect = 2e-09
Identities = 15/134 (11%), Positives = 38/134 (28%), Gaps = 17/134 (12%)
Query: 1 MTEVSREHMGAYLCIAS---NGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTS 57
+ G Y C+ + NG +++ + + V + P ++ P
Sbjct: 181 FLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGS--------PKNAVPPVIHSPND 232
Query: 58 -SDIMVREGSNVSMRCAA----SGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIG 112
G + + C + W + G+ + + S+
Sbjct: 233 HVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTID-GKKPDDITIDVTINESISHSRTED 291
Query: 113 AHEGQQLVLECISE 126
Q L ++ ++
Sbjct: 292 ETRTQILSIKKVTS 305
Score = 41.4 bits (96), Expect = 4e-05
Identities = 12/91 (13%), Positives = 22/91 (24%), Gaps = 13/91 (14%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
G Y C+ N L V + S + P +
Sbjct: 86 TLLNDTGNYTCMLRNTTY-CSKVAFPLEV---------VQKDSCFNSPMKLPVHKLYIEY 135
Query: 64 EGSNVS---MRCAASGSPPPSIMWRREGGEM 91
++ + S P+I W ++
Sbjct: 136 GIQRITCPNVDGYFPSSVKPTITWYMGCYKI 166
Score = 31.8 bits (71), Expect = 0.072
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 11/62 (17%)
Query: 56 TSSDIMVREGSNVSMRCA-----------ASGSPPPSIMWRREGGEMITNSFNNTVPPIV 104
T I V E ++C + S +++W + N P
Sbjct: 13 TMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPEN 72
Query: 105 KI 106
+I
Sbjct: 73 RI 74
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 53.6 bits (128), Expect = 2e-09
Identities = 11/69 (15%), Positives = 18/69 (26%)
Query: 32 VQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEM 91
+QC L ++ + V G +V +RC G W E
Sbjct: 140 LQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQ 199
Query: 92 ITNSFNNTV 100
+
Sbjct: 200 SATVMKSGG 208
Score = 44.7 bits (105), Expect = 3e-06
Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 20/96 (20%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
S + C A N V + + + V +
Sbjct: 220 TSDLNRKNVTCWAENDVGRA-EVSVQVNVSFPASVQ-------------------LHTAV 259
Query: 64 EGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT 99
E + + + G P PS+ W G + SF T
Sbjct: 260 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFT 295
Score = 30.1 bits (67), Expect = 0.23
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
+ + + G Y +A+N G S IM
Sbjct: 314 NQPTHVNNGNYTLLAANPFG---QASASIMAAFM 344
Score = 27.8 bits (61), Expect = 1.5
Identities = 14/113 (12%), Positives = 31/113 (27%), Gaps = 15/113 (13%)
Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRC------------AASGSPPPSIMWRREGGEMI 92
S+ + + ++++ S + C G P + G +
Sbjct: 93 ESLSWKTVQGLSLQELVL---SGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLA 149
Query: 93 TNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIAN 145
+ P +K+ G ++L C E W + + A
Sbjct: 150 HMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT 202
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 50.9 bits (122), Expect = 3e-09
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
P + P V EG +V + C S PPP + W+R + N+
Sbjct: 11 EHKRAPMFIYKP--QSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNT 60
Score = 27.0 bits (60), Expect = 1.6
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
+V+++ G Y A N G + L V
Sbjct: 78 KDVNKKDAGWYTVSAVNEAG---VTTCNTRLDVT 108
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 52.9 bits (126), Expect = 3e-09
Identities = 20/195 (10%), Positives = 42/195 (21%), Gaps = 68/195 (34%)
Query: 10 GAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVS 69
YLC + V + ++ PP P + ++ + +
Sbjct: 103 RRYLCTVTTKNGDCVQGIVRSHIR-------------KPPSC--IPETYELGTHDKYGID 147
Query: 70 MRC-AASGSPPPSIMWRREGGEMITNS--------------------------------- 95
+ C +I W + E+I +
Sbjct: 148 LYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVR 207
Query: 96 ------FNNTVPPIVKIP---------SQLIGAHEGQQLVLECISEAYPKSVN----YWT 136
+ V I G+ + C + + V+ W
Sbjct: 208 IKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWE 267
Query: 137 REKGDMIANGKTPFQ 151
G +I +
Sbjct: 268 NPSGWIIGLDFGVYS 282
Score = 51.0 bits (121), Expect = 1e-08
Identities = 18/100 (18%), Positives = 26/100 (26%), Gaps = 11/100 (11%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
E G Y C + I++ L + S L I
Sbjct: 187 HNPELEDSGRYDCYVHYDDV-RIKNDIVVSRC----KILTVIPSQDHRFKLILD--PKIN 239
Query: 62 VREGSNVSMRCAASGSP----PPSIMWRREGGEMITNSFN 97
V G ++ C A + I W G +I F
Sbjct: 240 VTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFG 279
Score = 32.5 bits (73), Expect = 0.034
Identities = 18/143 (12%), Positives = 37/143 (25%), Gaps = 49/143 (34%)
Query: 54 YPTSSDIMVREGSNVSMRCAASGSPP---------PSIMWRREG---------------- 88
+ + + M G S +C + W + G
Sbjct: 33 FGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLW 92
Query: 89 ---------------------GEMITNSFNNTV--PPIVKIPSQLIGAHEGQQLVLEC-I 124
G+ + + + PP + +G H+ + L C I
Sbjct: 93 IANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGI 152
Query: 125 SEAYPKSVNYWTREKGDMIANGK 147
A + W + ++I +G
Sbjct: 153 LYAKHYNNITWYKNNQELIIDGT 175
Score = 27.5 bits (60), Expect = 1.8
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 2 TEVSREHMGA-YLCIASNGVPPSVSKRIMLIVQ 33
V+ E++G Y C N + ++++
Sbjct: 298 ENVTEEYIGNTYTCRGHNYY-FDKTLTTTVVLE 329
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 50.8 bits (122), Expect = 3e-09
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ S P I+ +P D VR G +V + +G+ P + W + ++ +
Sbjct: 3 SGSSGPQIIQFP--EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE 52
Score = 26.5 bits (59), Expect = 1.9
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
+EH G Y + N G S ++ L V
Sbjct: 68 LAARQEHCGCYTLLVENKLG---SRQAQVNLTVV 98
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 50.1 bits (120), Expect = 3e-09
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 45 SSMPPDILDYPTS--SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ P + V + V RC A G+P P++ W + G E
Sbjct: 1 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH 53
Score = 25.5 bits (56), Expect = 4.6
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 1 MTEVSREHMGAYLCIASNGV 20
M V G Y C+ N
Sbjct: 69 MESVVPSDKGNYTCVVENEY 88
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo
sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 50.5 bits (121), Expect = 3e-09
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
PP L +P + V G+ ++C G PPP ++W + G ++ +
Sbjct: 13 PPCFLRFP--RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASE 58
Score = 25.8 bits (57), Expect = 3.5
Identities = 12/59 (20%), Positives = 23/59 (38%)
Query: 89 GEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGK 147
G M +S + PP + + G + L+C+ P V W + + A+ +
Sbjct: 1 GPMKASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASER 59
Score = 25.8 bits (57), Expect = 3.8
Identities = 8/34 (23%), Positives = 10/34 (29%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
T G Y+C A N G + V
Sbjct: 74 TAALPTDAGVYVCRARNAAG---EAYAAAAVTVL 104
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 49.6 bits (119), Expect = 4e-09
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEM 91
I P + + GS + ++C A GSP P W + +
Sbjct: 3 KLQICVEP--TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL 44
Score = 34.6 bits (80), Expect = 0.002
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
V EH G Y C N SK++ +I+
Sbjct: 55 PYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 86
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 52.4 bits (126), Expect = 7e-09
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
I D + V EG V C A G PPP+I+W +++
Sbjct: 384 RARIRDRKAQ-QVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAK 430
Score = 34.3 bits (79), Expect = 0.009
Identities = 9/61 (14%), Positives = 20/61 (32%)
Query: 90 EMITNSFNNTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKTP 149
++ N F I +Q + EG + C ++ P W + +++
Sbjct: 374 VLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNG 433
Query: 150 F 150
Sbjct: 434 R 434
Score = 32.0 bits (73), Expect = 0.067
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+ G YLCIA+N + S L V+
Sbjct: 446 RYAQVQDNGTYLCIAANAG-GNDSMPAHLHVR 476
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 49.4 bits (118), Expect = 8e-09
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAA-SGSPPPSIMWRREGGEMITNSF 96
P + S VR G++V+ C A S SP +++W R + +
Sbjct: 9 PIMVTVEEQRS-QSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA 57
Score = 34.4 bits (79), Expect = 0.003
Identities = 9/32 (28%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
V G Y+C SN L VQ
Sbjct: 67 RNVQPSDAGTYVCTGSNMF-AMDQGTATLHVQ 97
Score = 27.8 bits (62), Expect = 0.62
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 101 PPIVKI-PSQLIGAHEGQQLVLECISEA-YPKSVNYWTREKGDMI 143
P +V + + G + C +++ P WTR +
Sbjct: 9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL 53
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 48.9 bits (117), Expect = 1e-08
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
PP + P ++ + EG M SG P P + W G + ++
Sbjct: 5 PPRFIQVP--ENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDD 50
Score = 26.9 bits (60), Expect = 1.4
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
V GAY C+A N G + + L V
Sbjct: 67 EVVRASDAGAYACVAKNRAG---EATFTVQLDVL 97
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 49.7 bits (118), Expect = 1e-08
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 48 PPDI-LDYP--TSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIV 104
PP I LD P I+V G+ + + SG P P+++W++ +
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 72
Query: 105 KIPSQLIGAHEGQQLV 120
+ + L
Sbjct: 73 DTGDSDEWVFDKKLLC 88
Score = 26.6 bits (58), Expect = 2.2
Identities = 4/17 (23%), Positives = 5/17 (29%)
Query: 2 TEVSREHMGAYLCIASN 18
+E G Y N
Sbjct: 108 EGAEKEDEGVYTVTVKN 124
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 48.9 bits (117), Expect = 1e-08
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
SS P + EG V+ C +G+P P I W ++G ++ S
Sbjct: 4 GSSGAPFFEMKL--KHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKS 53
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 48.5 bits (116), Expect = 1e-08
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ P IL I ++ G ++ G+P P+ W
Sbjct: 1 LKPKILTAS--RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAP 47
Score = 28.8 bits (65), Expect = 0.25
Identities = 9/48 (18%), Positives = 13/48 (27%)
Query: 100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGK 147
+ P + S+ I G LE P WT +
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE 48
Score = 26.1 bits (58), Expect = 2.1
Identities = 8/34 (23%), Positives = 9/34 (26%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
R G Y N G +IVQ
Sbjct: 63 PSAKRADSGNYKLKVKNELG---EDEAIFEVIVQ 93
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 48.5 bits (116), Expect = 1e-08
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEM 91
+ P D V EG + ++C+ G+P P I W G +
Sbjct: 7 GMEVAPSFSSVL--KDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI 52
Score = 26.5 bits (59), Expect = 2.0
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+ E G Y C+A N + VS + V
Sbjct: 69 QDALPEDHGTYTCLAENAL-GQVSCSAWVTVH 99
Score = 25.0 bits (55), Expect = 6.9
Identities = 10/43 (23%), Positives = 13/43 (30%)
Query: 100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDM 142
V P + EGQ VL+C P W +
Sbjct: 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI 52
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 48.6 bits (116), Expect = 1e-08
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEM 91
+ ++ P V G V++ C P P I W ++G +
Sbjct: 6 SGLEEVQLVVEP--EGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL 51
Score = 32.4 bits (74), Expect = 0.014
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 2 TEVSREHMGAYLCIASNGV-PPSVSKRIMLIVQ 33
E+ + G Y C+A++ P S+ + + +
Sbjct: 62 PEIGPQDQGTYSCVATHSSHGPQESRAVSISII 94
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 48.4 bits (116), Expect = 2e-08
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
P I+ D V S A+G P P+ +W ++G IT
Sbjct: 6 KPVIVTGL--QDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKA-ITQG 50
Score = 25.7 bits (57), Expect = 4.0
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
+ G Y C N G SVS L ++
Sbjct: 67 HKTDTSDSGLYTCTVKNSAG---SVSSSCKLTIK 97
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 50.4 bits (120), Expect = 3e-08
Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 5/99 (5%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPT---S 57
M ++ E G Y +G + ++L+ + P
Sbjct: 170 MEKLQDEDEGTYTFQLQDGKA-TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY 228
Query: 58 SDIMVREGSNVSMRCAASGSPPP-SIMWRREGGEMITNS 95
V NV ++C + I+W ++ E+ +
Sbjct: 229 LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE 267
Score = 47.3 bits (112), Expect = 3e-07
Identities = 11/94 (11%), Positives = 29/94 (30%), Gaps = 3/94 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
++ + +G Y C ++ + S I + + + P + + +I+
Sbjct: 63 KDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLAL--SHEHKFPTVPVKSELAVEIL 120
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+G A S + + E+
Sbjct: 121 E-KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGP 153
Score = 33.8 bits (77), Expect = 0.012
Identities = 4/49 (8%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ P + ++ +++ C +P W ++ +
Sbjct: 2 IDPFTKEVV--VNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSP 47
Score = 28.0 bits (62), Expect = 1.2
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
TE S++ G Y I + G R+ L+ +
Sbjct: 281 TEFSKKDAGIYEVILKDDRG---KDKSRLKLVDE 311
Score = 27.3 bits (60), Expect = 1.9
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR 137
+ P K + L EC + PKS W++
Sbjct: 2 IDPFTKEVVVNVDDDGVISLNFEC-DKMTPKSEFSWSK 38
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 50.0 bits (118), Expect = 4e-08
Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 12/100 (12%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+T + +E G YLC A + I + + + + +
Sbjct: 294 ITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLF------------VNEESTIPRSPTVV 341
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV 100
GS+V++ C + SI + V
Sbjct: 342 KGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLV 381
Score = 41.9 bits (97), Expect = 3e-05
Identities = 10/95 (10%), Positives = 21/95 (22%), Gaps = 7/95 (7%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ ++ G YLC A + + Q + + +
Sbjct: 189 INQLRLSDAGQYLCQAGDDSNSNKKN-----ADLQVLKPEPELVYEDLRGSVTFHCALGP 243
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
V + C S ++ G
Sbjct: 244 EV--ANVAKFLCRQSSGENCDVVVNTLGKRAPAFE 276
Score = 37.3 bits (85), Expect = 0.001
Identities = 10/99 (10%), Positives = 25/99 (25%), Gaps = 21/99 (21%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ +++ G Y C+ + + I +I ++
Sbjct: 410 LNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNL-----------------KVPGNV 452
Query: 61 MVREGSNVSMRCA----ASGSPPPSIMWRREGGEMITNS 95
G + + C S W G + + +
Sbjct: 453 TAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQ 491
Score = 33.0 bits (74), Expect = 0.033
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 58 SDIMVREGSNVSMRC---AASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPS 108
++ EG++VS+ C S + W R+G + ++ + +
Sbjct: 8 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYA 61
Score = 31.5 bits (70), Expect = 0.084
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+ V+R G Y C G + + + V+
Sbjct: 513 LNLVTRADEGWYWCGVKQGHFYGETAAVYVAVE 545
Score = 29.2 bits (64), Expect = 0.62
Identities = 10/91 (10%), Positives = 22/91 (24%), Gaps = 17/91 (18%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ ++S++ G Y C + + Q +
Sbjct: 79 IAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGL----------------LNDTKVY 122
Query: 61 MVREGSNVSMRCAASGSPPPS-IMWRREGGE 90
V G V++ C ++ G
Sbjct: 123 TVDLGRTVTINCPFKTENAQKRKSLYKQIGL 153
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 49.0 bits (116), Expect = 5e-08
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 19/104 (18%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
M VS + +YLC A+ + K I + + Y+ P+I
Sbjct: 58 MNPVSFGNEHSYLCTATCESR-KLEKGIQVEI----------YSFPKDPEIHLSGP---- 102
Query: 61 MVREGSNVSMRCAASGSPP---PSIMWRREGGEMITNSFNNTVP 101
+ G ++++C+ + P I + M + F
Sbjct: 103 -LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDAD 145
Score = 42.5 bits (99), Expect = 1e-05
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGG 89
S + + G +VS+ C+ +G P WR +
Sbjct: 9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQID 40
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 48.3 bits (115), Expect = 5e-08
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
Query: 10 GAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVS 69
G AS P S + + + ++ + P D+ V EGS
Sbjct: 3 GMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTI--LDMEVVEGSAAR 60
Query: 70 MRCAASGSPPPSIMWRREGGEMITNS 95
C G P P +MW ++ + +
Sbjct: 61 FDCKVEGYPDPEVMWFKDDNPVKESR 86
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 48.5 bits (115), Expect = 9e-08
Identities = 11/92 (11%), Positives = 27/92 (29%), Gaps = 15/92 (16%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
++ + MG Y ++ + V P + ++ V+
Sbjct: 78 ITMKDMGVYTLDMTDENYRRTQATVRFHV--------------HQPVTQPFLQVTNTTVK 123
Query: 64 EGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
E +V++ C + +I W +
Sbjct: 124 ELDSVTLTCLS-NDIGANIQWLFNSQSLQLTE 154
Score = 41.6 bits (97), Expect = 2e-05
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+ RE G Y C SN V S I L +
Sbjct: 170 IKREDAGEYQCEISNPVSVRRSNSIKLDII 199
Score = 32.3 bits (73), Expect = 0.035
Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 2/67 (2%)
Query: 56 TSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHE 115
+ V E +NV + + W + G + A+
Sbjct: 5 EAVPPQVAEDNNVLLLVHNLPLALGAFAWYK--GNTTAIDKEIARFVPNSNMNFTGQAYS 62
Query: 116 GQQLVLE 122
G++++
Sbjct: 63 GREIIYS 69
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 46.5 bits (111), Expect = 1e-07
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
P I + V +GS+ R G P P W + G I S
Sbjct: 5 APKIFERI--QSQTVGQGSDAHFRVRVVGKPDPECEWYKN-GVKIERS 49
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 47.6 bits (113), Expect = 2e-07
Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 10/101 (9%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSM-----PPDILDYP 55
M ++ E G Y +G + S +++ + K + P ++Y
Sbjct: 65 MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL 124
Query: 56 TSSDIMVREGSNVSMRCAASGSPPPS-IMWRREGGEMITNS 95
V NV ++C + + I+W + I+
Sbjct: 125 ---SWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISVD 161
Score = 36.8 bits (85), Expect = 0.001
Identities = 5/39 (12%), Positives = 10/39 (25%), Gaps = 1/39 (2%)
Query: 58 SDIMVREGSNVS-MRCAASGSPPPSIMWRREGGEMITNS 95
+ + E V A S + + E+
Sbjct: 10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGP 48
Score = 25.3 bits (55), Expect = 8.0
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 2 TEVSREHMGAYLCIASNGV 20
TE S++ G Y I +
Sbjct: 176 TEFSKKDAGIYEVILKDDR 194
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 45.4 bits (108), Expect = 2e-07
Identities = 11/52 (21%), Positives = 13/52 (25%), Gaps = 3/52 (5%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
T P I V G N P + W G E + S
Sbjct: 4 TLDHAPRITLRM--RSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVE-LQES 52
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 45.5 bits (108), Expect = 3e-07
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 48 PPDI-LDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFN 97
PP I L + + G +++ G P P ++W + G + T+ +
Sbjct: 21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVH 71
Score = 25.4 bits (56), Expect = 4.6
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 99 TVPPIVKIPSQL---IGAHEGQQLVLECISEAYPKSVNYWTRE 138
PP +++P L G+QL L + P+ WT+
Sbjct: 19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG 61
Score = 25.0 bits (55), Expect = 8.3
Identities = 3/17 (17%), Positives = 5/17 (29%)
Query: 2 TEVSREHMGAYLCIASN 18
+ +R G Y
Sbjct: 84 RQAARSDSGEYELSVQI 100
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 47.4 bits (113), Expect = 3e-07
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
P I++ P +D+ V EG ++C AS S+ W G ++T+
Sbjct: 341 APVIVEPP--ADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHG 385
Score = 32.0 bits (73), Expect = 0.060
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 15/88 (17%)
Query: 63 REGSNVSMRCAASGSPPPSIMWRREGGEMIT----NSFNNTVPPIVKIPSQLIGAHEGQQ 118
+ RC PP++ G I N F P IV+ P+ L EG
Sbjct: 309 PSNTACCARCNT----PPNLK-----GRYIGELDQNYFTCYAPVIVEPPADLN-VTEGMA 358
Query: 119 LVLECISEAYPKSVNYWTREKGDMIANG 146
L+C + + W G ++ +G
Sbjct: 359 AELKCRAST-SLTSVSWITPNGTVMTHG 385
Score = 30.5 bits (69), Expect = 0.19
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIV 32
T V+ + G Y C+ SN G + + L V
Sbjct: 402 TNVTVQDTGMYTCMVSNSVG---NTTASATLNV 431
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 47.4 bits (113), Expect = 3e-07
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
P I+D P D+ + EG ++C P S+ W G +++++
Sbjct: 352 APFIMDAP--RDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHA 395
Score = 32.8 bits (75), Expect = 0.030
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLVL 121
+ S RC A P M R E+ SF + P I+ P L EG+ L
Sbjct: 319 IPTNSTCCGRCHA-----PMHMRGRYLVEVDQASFQCSAPFIMDAPRDLN-ISEGRMAEL 372
Query: 122 ECISEAYPKSVNYWTREKGDMIANG 146
+C P S W G ++++
Sbjct: 373 KC--RTPPMSSVKWLLPNGTVLSHA 395
Score = 32.4 bits (74), Expect = 0.039
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+ V G Y C+ +N + + L V
Sbjct: 412 SHVLLSDTGVYTCMVTNVA-GNSNASAYLNVS 442
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 46.6 bits (110), Expect = 4e-07
Identities = 16/97 (16%), Positives = 26/97 (26%), Gaps = 17/97 (17%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
V G Y C+ G K + + V+ Y + +
Sbjct: 72 PSVQVRDSGQYRCLVICG-AAWDYKYLTVKVKASYMR----------------IDTRILE 114
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNN 98
V V + C A G P + W+ T+
Sbjct: 115 VPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRT 151
Score = 38.5 bits (89), Expect = 2e-04
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITN 94
V GS+VS+ C + R + + N
Sbjct: 12 YTVDVGSSVSLECDFDRRECTELEGIRASLQKVEN 46
Score = 27.3 bits (60), Expect = 1.6
Identities = 8/48 (16%), Positives = 15/48 (31%)
Query: 104 VKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKTPFQ 151
V P ++ G + LEC + + R + N +
Sbjct: 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQS 52
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 46.0 bits (109), Expect = 4e-07
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 20/99 (20%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ + G Y C S+S + L V +L P
Sbjct: 56 FKANNNDSGEYTCQTGQT---SLSDPVHLTVL-------------FEWLVLQTPHL---E 96
Query: 62 VREGSNVSMRCAASGSPPP-SIMWRREGGEMITNSFNNT 99
+EG + +RC + P + + + G + + T
Sbjct: 97 FQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPT 135
Score = 44.0 bits (104), Expect = 2e-06
Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 35/117 (29%)
Query: 55 PTSSDIMVREGSNVSMRCAASGSPPP-SIMWRREGGEM---------------------- 91
I V + +V++ C + SP SI W G +
Sbjct: 9 LEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTC 68
Query: 92 ------ITNSFNNTV---PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY-WTRE 138
+++ + TV +++ P EG+ ++L C S V + +
Sbjct: 69 QTGQTSLSDPVHLTVLFEWLVLQTPHLEF--QEGETIMLRCHSWKDKPLVKVTFFQN 123
Score = 36.3 bits (84), Expect = 0.001
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+ + + H G Y C + G SK + + VQ
Sbjct: 138 IPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 46.0 bits (109), Expect = 6e-07
Identities = 10/93 (10%), Positives = 23/93 (24%), Gaps = 21/93 (22%)
Query: 4 VSREHMGAYLCIASNGVPPSV-SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMV 62
+ + Y + +V K L +Q S +
Sbjct: 73 LKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ--------------------ERVSKPKIS 112
Query: 63 REGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
N ++ C P + ++G + +
Sbjct: 113 WTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQ 145
Score = 29.9 bits (67), Expect = 0.23
Identities = 4/53 (7%), Positives = 13/53 (24%), Gaps = 2/53 (3%)
Query: 53 DYPTSSDIMVREGSNVSMRCA--ASGSPPPSIMWRREGGEMITNSFNNTVPPI 103
+ + + G ++++ I W + + F
Sbjct: 2 EITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETF 54
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 44.7 bits (106), Expect = 6e-07
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
I++ D+ V+EGS+ + RC S + + W + + N
Sbjct: 13 RVHIIEDL--EDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANE 58
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 46.4 bits (110), Expect = 6e-07
Identities = 24/180 (13%), Positives = 45/180 (25%), Gaps = 61/180 (33%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
S G Y C S I L + +L + +
Sbjct: 55 ASVNDSGEYRCQRGLS---GRSDPIQLEI-------------HRGWLLLQVSSR---VFT 95
Query: 64 EGSNVSMRC-AASGSPPPSIMWRREGGEM------------------------------- 91
EG +++RC A ++++ R G
Sbjct: 96 EGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHR 155
Query: 92 -ITNSFNNTV-----PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVN---YWTREKGDM 142
+ + TV P++ EG + L C ++ + Y++ G
Sbjct: 156 YTSAGISVTVKELFPAPVLNASVTSP-LLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSK 214
Score = 44.9 bits (106), Expect = 2e-06
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 14/84 (16%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ + + H G Y C S I + V+ + P + S
Sbjct: 135 ILKTNISHNGTYHCSGMGKHR-YTSAGISVTVKELF----------PAPVLN---ASVTS 180
Query: 61 MVREGSNVSMRCAASGSPPPSIMW 84
+ EG+ V++ C +
Sbjct: 181 PLLEGNLVTLSCETKLLLQRPGLQ 204
Score = 39.9 bits (93), Expect = 1e-04
Identities = 16/114 (14%), Positives = 33/114 (28%), Gaps = 35/114 (30%)
Query: 58 SDIMVREGSNVSMRCAASGSP-PPSIMWRREGGEMITNSFNNTV---------------- 100
+ V + V++ C P S W G T++ + +
Sbjct: 9 PWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDSGEYRCQRG 68
Query: 101 ---------------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY-WTRE 138
++++ S++ EG+ L L C + N + R
Sbjct: 69 LSGRSDPIQLEIHRGWLLLQVSSRVF--TEGEPLALRCHAWKDKLVYNVLYYRN 120
Score = 28.0 bits (62), Expect = 1.1
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
RE G Y C A+ G S + L V
Sbjct: 228 LTARREDSGLYWCEAATEDGNVLKRSPELELQVL 261
Score = 26.4 bits (58), Expect = 4.1
Identities = 5/38 (13%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 102 PIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY-WTRE 138
++ + + + + + L C P S + W
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLN 39
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 45.6 bits (108), Expect = 7e-07
Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 20/100 (20%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ + G Y C + S + L V + +L P
Sbjct: 58 IDAATVNDSGEYRCQTNLSTL---SDPVQLEV-------------HIGWLLLQAPRWV-- 99
Query: 61 MVREGSNVSMRC-AASGSPPPSIMWRREGGEMITNSFNNT 99
+E + +RC + + + + + G + N+
Sbjct: 100 -FKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSD 138
Score = 38.7 bits (90), Expect = 2e-04
Identities = 14/115 (12%), Positives = 29/115 (25%), Gaps = 35/115 (30%)
Query: 57 SSDIMVREGSNVSMRCAASGSPPP-SIMWRREG--------------------------- 88
V E +V+++C + SP S W
Sbjct: 14 PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDSGEYRCQT 73
Query: 89 -GEMITNSFNNTV---PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY-WTRE 138
+++ V +++ P + E + L C S + +
Sbjct: 74 NLSTLSDPVQLEVHIGWLLLQAPRWVF--KEEDPIHLRCHSWKNTALHKVTYLQN 126
Score = 33.7 bits (77), Expect = 0.011
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+ + + + G+Y C G S+ + + +
Sbjct: 141 IPKATLKDSGSYFCRGLVGSKNVSSETVNITIT 173
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 45.2 bits (107), Expect = 1e-06
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 14/90 (15%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSV-SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
+ + G Y C G S + L+V Y P +
Sbjct: 68 IDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLY----------GKPFLSADRGL-- 115
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGG 89
++ G N+S+ C+++ P +EG
Sbjct: 116 -VLMPGENISLTCSSAHIPFDRFSLAKEGE 144
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 43.7 bits (103), Expect = 2e-06
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPP-SIMWRREGGEMITNS 95
PP I + G ++C +PPP I W + + + +
Sbjct: 14 PPIISS---TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGT 59
Score = 30.2 bits (68), Expect = 0.11
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPK-SVNYWTREKGDMIANGKTPFQ 151
PPI+ A G++ ++C + P W+ ++ + + +
Sbjct: 13 GPPIISSTQT-QHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYT 64
Score = 26.8 bits (59), Expect = 1.9
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 2 TEVSREHMGA-YLCIASN--GVPPSVSKRIMLIVQ 33
+ + R Y C A N G S ++ I L Q
Sbjct: 81 SNIVRADFQTIYNCTAWNSFG---SDTEIIRLKEQ 112
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 44.9 bits (106), Expect = 2e-06
Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 20/100 (20%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ + + G Y C S + L V + +L P
Sbjct: 58 IDAATVDDSGEYRCQTQLSTL---SDPVQLEVH-------------IGWLLLQAPRW--- 98
Query: 61 MVREGSNVSMRC-AASGSPPPSIMWRREGGEMITNSFNNT 99
+ +E + +RC + + + + + G N+
Sbjct: 99 VFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSD 138
Score = 38.7 bits (90), Expect = 2e-04
Identities = 14/114 (12%), Positives = 29/114 (25%), Gaps = 35/114 (30%)
Query: 58 SDIMVREGSNVSMRCAASGSPPP-SIMWRREG---------------------------- 88
V E +V+++C + SP S W
Sbjct: 15 QWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTQ 74
Query: 89 GEMITNSFNNTV---PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY-WTRE 138
+++ V +++ P + E + L C S + +
Sbjct: 75 LSTLSDPVQLEVHIGWLLLQAPRWVF--KEEDPIHLRCHSWKNTALHKVTYLQN 126
Score = 32.5 bits (74), Expect = 0.030
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+ + + + G+Y C G S+ + + +
Sbjct: 141 IPKATLKDSGSYFCRGLVGSKNVSSETVQITIT 173
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 44.8 bits (105), Expect = 2e-06
Identities = 11/84 (13%), Positives = 21/84 (25%), Gaps = 12/84 (14%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ G C A S +++V + + S I
Sbjct: 69 PSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSH------------GIE 116
Query: 62 VREGSNVSMRCAASGSPPPSIMWR 85
+ G + + C A I +
Sbjct: 117 LSVGEKLVLNCTARTELNVGIDFN 140
Score = 35.2 bits (80), Expect = 0.004
Identities = 16/134 (11%), Positives = 27/134 (20%), Gaps = 47/134 (35%)
Query: 49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEM----------------- 91
+ D I + V + C S ++ E
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLGS-ISNLNVSLCARYPEKRFVPDGNRISWDSKKGF 66
Query: 92 -----------------------------ITNSFNNTVPPIVKIPSQLIGAHEGQQLVLE 122
I + +V PS I G++LVL
Sbjct: 67 TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 126
Query: 123 CISEAYPKSVNYWT 136
C + +
Sbjct: 127 CTARTELNVGIDFN 140
Score = 29.8 bits (66), Expect = 0.29
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
V+R G Y C AS+G+ + + V
Sbjct: 178 VTRSDQGLYTCAASSGL-MTKKNSTFVRVH 206
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 42.9 bits (101), Expect = 2e-06
Identities = 8/49 (16%), Positives = 18/49 (36%)
Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMIT 93
S + +P + ++ V EG + C + S+ W + +
Sbjct: 1 SKVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLY 49
Score = 26.8 bits (59), Expect = 2.0
Identities = 6/50 (12%), Positives = 13/50 (26%)
Query: 101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKTPF 150
+Q + EG +L C + + W+ +
Sbjct: 6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKA 55
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 44.4 bits (104), Expect = 3e-06
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 12/99 (12%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
E Y+C+ G + L V + ++ + +M
Sbjct: 82 AEAQVGDERDYVCVVRAGAAGTAEATARLNV----------FAKPEATEVSPNKGTLSVM 131
Query: 62 VREGSNVSMRC-AASGSPPPSIMWRREGGEMITNSFNNT 99
+ + C + +G+P P I W R G + N
Sbjct: 132 -EDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNP 169
Score = 28.6 bits (63), Expect = 0.61
Identities = 7/41 (17%), Positives = 10/41 (24%), Gaps = 1/41 (2%)
Query: 99 TVPPIVKIPSQLIGAHEGQQLVLECISE-AYPKSVNYWTRE 138
+ L + Q + C S P W R
Sbjct: 117 EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRN 157
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 43.8 bits (103), Expect = 3e-06
Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 13/103 (12%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ + G Y C+ + + + V L + P I SD
Sbjct: 69 ILALRPSDEGTYECVVLKYEKDAFKREHLAEVT------LSVKADFPTPSI------SDF 116
Query: 61 MVREGSNVSMRCAASG-SPPPSIMWRREGGEMITNSFNNTVPP 102
+ + + C+ SG P P + W G E+ + + P
Sbjct: 117 EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDP 159
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 40.9 bits (96), Expect = 9e-06
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 42 IYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ + P + ++V G + +RC SI W R+G +++ ++
Sbjct: 3 LPEQAQPWGVPVEV--ESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESN 53
Score = 30.9 bits (70), Expect = 0.041
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 98 NTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKT 148
P V + + + H G L L C +S+N W R+ ++ + +T
Sbjct: 6 QAQPWGVPVEVESLLVHPGDLLQLRCRLRDDVQSIN-WLRDGVQLVESNRT 55
Score = 25.9 bits (57), Expect = 3.1
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 2 TEVSREHMGAYLCIASNGV 20
+ G Y C+ S+
Sbjct: 65 RDSIPADSGLYACVTSSPS 83
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 41.2 bits (97), Expect = 9e-06
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
SS P I+ D V G V M S +MW + G E +T
Sbjct: 5 SSGPVLIVTPL--EDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVE-LTRE 51
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 41.2 bits (97), Expect = 9e-06
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 58 SDIMVREGSNVSMRCAASGSPPPS-IMWRREGGEMITNS 95
+ EG +V C + + W G + NS
Sbjct: 9 MHAVGEEGGHVKYVCKIENYDQSTQVTWYF-GVRQLENS 46
Score = 26.1 bits (58), Expect = 2.7
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
++++ G Y C N G S L V+
Sbjct: 63 KDITKLDDGTYRCKVVNDYG---EDSSYAELFVK 93
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 41.2 bits (96), Expect = 1e-05
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 49 PDILDYPTSSDIMVREGSNVSMRCAASGSPPP--SIMWRREGGEMITNSFNNTVP 101
P I P + GS+VS C+A+ S + W + + N
Sbjct: 11 PQITVQPET--QSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAH 63
Score = 27.7 bits (61), Expect = 0.78
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIV 32
V G Y C+ SN S S L +
Sbjct: 81 RNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 40.8 bits (96), Expect = 1e-05
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
SS P + D+ V EG ++RC S P + W +
Sbjct: 4 GSSGPVRFQEAL--KDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNV-LRPG 51
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 41.8 bits (98), Expect = 1e-05
Identities = 14/125 (11%), Positives = 33/125 (26%), Gaps = 35/125 (28%)
Query: 58 SDIMVREGSNVSMRCAASGSPPP-SIMWRREGGEMITN---------------------- 94
+ +G NV++ C + S W G
Sbjct: 12 PWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQ 71
Query: 95 --SFNNTV-------PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNY-WTREKGDMIA 144
+ + V +++ ++++ EGQ L L C + ++ +
Sbjct: 72 QVNESEPVYLEVFSDWLLLQASAEVV--MEGQPLFLRCHGWRNWDVYKVIYYKDGEALKY 129
Query: 145 NGKTP 149
+
Sbjct: 130 WYENH 134
Score = 40.6 bits (95), Expect = 4e-05
Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 20/100 (20%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ E G Y C + S+ + L V +L +S
Sbjct: 55 IVNAKFEDSGEYKCQHQQV---NESEPVYLEV-------------FSDWLLL---QASAE 95
Query: 61 MVREGSNVSMRC-AASGSPPPSIMWRREGGEMITNSFNNT 99
+V EG + +RC +++ ++G + N+
Sbjct: 96 VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHN 135
Score = 33.3 bits (76), Expect = 0.016
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+T + E G Y C S+ + + V
Sbjct: 138 ITNATVEDSGTYYCTGKVWQLDYESEPLNITVI 170
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 40.7 bits (96), Expect = 2e-05
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
SS P I+ D V G +V +RC S + P + W ++ I S
Sbjct: 4 GSSGPAAIIKPL--EDQWVAPGEDVELRCELSRAGTP-VHWLKDRKA-IRKS 51
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 40.5 bits (95), Expect = 2e-05
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+V G + +RC SI W R+G ++ ++
Sbjct: 11 ESFLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLAESN 47
Score = 29.3 bits (66), Expect = 0.19
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 101 PPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKT 148
+ + H G L L C +S+N W R+ + + +T
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDVQSIN-WLRDGVQLAESNRT 49
Score = 27.0 bits (60), Expect = 1.2
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
+ G Y C+ S+ S + + V
Sbjct: 59 QDSVPADSGLYACVTSSPS-GSDTTYFSVNVS 89
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 40.4 bits (95), Expect = 2e-05
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
SS ++L +D+ V+ +C S + W + G E + S
Sbjct: 4 GSSGQLEVLQDI--ADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVE-VRPS 51
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 40.1 bits (94), Expect = 3e-05
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGE 90
SS P IL + V + C S W ++G +
Sbjct: 5 SSGPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQK 49
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 41.3 bits (97), Expect = 3e-05
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREG 88
+ EG+ V++ C P +I W R+G
Sbjct: 26 VAVYTWEGNQVNITCEVFAYPSATISWFRDG 56
Score = 27.1 bits (60), Expect = 2.1
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
T S G Y C A N G S +L+
Sbjct: 81 TPDSENDFGNYNCTAVNRIG---QESLEFILVQA 111
Score = 25.6 bits (56), Expect = 7.5
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 100 VPPIVKIPSQLIGAHEGQQLVLECISEAYPK 130
P ++ P + EG Q+ + C AYP
Sbjct: 18 YAPKLQGPVAVY-TWEGNQVNITCEVFAYPS 47
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 40.4 bits (94), Expect = 3e-05
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 57 SSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMIT 93
+ I V EG ++++C S S+ W G I
Sbjct: 8 TETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIF 44
Score = 26.5 bits (58), Expect = 2.3
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 107 PSQLIGAHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKTPF 150
++ I EGQ L L+C++ S W G I + P
Sbjct: 7 HTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPV 50
Score = 25.0 bits (54), Expect = 9.0
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
V+ + G Y C+ + +K + +IV
Sbjct: 71 PNVTLQDEGVYKCLHYSD--SVSTKEVKVIVL 100
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 40.7 bits (95), Expect = 3e-05
Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 20/99 (20%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
++R+ G Y + + + L ++ S ++
Sbjct: 66 KNLTRDDSGTYNVTVYSTNGTRILNKA-LDLRILE------------------MVSKPMI 106
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV 100
E SN ++ C + + G E + + T+
Sbjct: 107 YWECSNATLTCEVLEGTDVELKLYQ-GKEHLRSLRQKTM 144
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 39.2 bits (92), Expect = 5e-05
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
SS + +++ V E C P ++ WR+ E + S
Sbjct: 5 SSGANCFTEEL--TNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLE-LRAS 51
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 39.3 bits (92), Expect = 5e-05
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
SS P EG+ +++C S + W++ G E + +
Sbjct: 5 SSGPARFTQDL--KTKEASEGATATLQCEL--SKVAPVEWKK-GPETLRDG 50
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 40.4 bits (94), Expect = 6e-05
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 18/99 (18%)
Query: 6 REHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREG 65
RE +C ++ R ++ + +++ P G
Sbjct: 60 REPETQPVCFFRCA-RRTLQARGLIRT----------FQRPDRVELMPLPP----WQPVG 104
Query: 66 SNVSMRCAASGSPPP---SIMWRREGGEMITNSFNNTVP 101
N ++ C G+ P ++ R E+I SF P
Sbjct: 105 ENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPP 143
Score = 30.8 bits (69), Expect = 0.13
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWR 85
V G ++ + C+ + P
Sbjct: 10 RVAFVERGGSLWLNCSTNCPRPERGGLE 37
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 40.6 bits (95), Expect = 6e-05
Identities = 6/46 (13%), Positives = 15/46 (32%)
Query: 55 PTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV 100
S G +++RC + ++++ N +V
Sbjct: 251 YKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSV 296
Score = 30.6 bits (69), Expect = 0.19
Identities = 12/81 (14%), Positives = 20/81 (24%), Gaps = 31/81 (38%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
+V E G Y C A + + + L V +
Sbjct: 306 KKVQVEDGGVYTCYAMGETF---NETLSVELKV------------YNFTL---------- 340
Query: 60 IMVREGSNVSMRCAASGSPPP 80
G + ++ AA P
Sbjct: 341 ----HGHHDTLNAAADPWSHP 357
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 38.9 bits (91), Expect = 7e-05
Identities = 6/41 (14%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 55 PTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
P ++ G++ ++ C + + W ++G + +++S
Sbjct: 16 PAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKK-LSSS 54
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 38.5 bits (90), Expect = 1e-04
Identities = 13/47 (27%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRCAAS-GSPPPSIMWRREGGE 90
SS I + V EG + S C S S MW G
Sbjct: 5 SSGHVGITKRL--KTMEVLEGESCSFECVLSHESASDPAMWTVGGKT 49
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 38.1 bits (89), Expect = 1e-04
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ V GS + W+R G + I+ S
Sbjct: 16 RSVEVAAGSPAVFEAETER-AGVKVRWQRGGSD-ISAS 51
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 39.3 bits (91), Expect = 1e-04
Identities = 20/93 (21%), Positives = 27/93 (29%), Gaps = 16/93 (17%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
+ E G+Y C+ S S I L V P + +
Sbjct: 85 LRVEDEGSYTCLFVTFPQGSRSVDIWLRVL-------------AKPQN--TAEVQKVQLT 129
Query: 64 EGSNVSMRC-AASGSPPPSIMWRREGGEMITNS 95
RC + G PP I W + G M S
Sbjct: 130 GEPVPMARCVSTGGRPPAQITWHSDLGGMPQTS 162
Score = 27.7 bits (61), Expect = 1.2
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 5/47 (10%)
Query: 58 SDIMVREGSNVSMRCAASGSPPP-----SIMWRREGGEMITNSFNNT 99
+ + G +V++ C + W R G F+ T
Sbjct: 7 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQT 53
Score = 27.7 bits (61), Expect = 1.3
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Query: 100 VPPIVKIPSQLIGAHEGQQLVLECIS-EAYPKSVNYWTREKGDMIANGKTP 149
P Q + + C+S P + W + G M + P
Sbjct: 115 AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVP 165
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 39.1 bits (91), Expect = 2e-04
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 18/92 (19%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSV----SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPT 56
++ ++++ G Y C S P S + +++ Y P + P
Sbjct: 67 ISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLY----------EKPSLSAQPG 116
Query: 57 SSDIMVREGSNVSMRCAASGSPPPSIMWRREG 88
V G NV++ C +S S REG
Sbjct: 117 P---TVLAGENVTLSC-SSRSSYDMYHLSREG 144
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 37.7 bits (88), Expect = 2e-04
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ S IL +D V G + ++C S + P W + G + S
Sbjct: 3 SGSSGLKILTPL--TDQTVNLGKEICLKCEISENIPGK--WTKNGLP-VQES 49
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 38.8 bits (90), Expect = 2e-04
Identities = 11/95 (11%), Positives = 25/95 (26%), Gaps = 15/95 (15%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ + E G+Y S +S + I++ + S +
Sbjct: 75 SNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQ--------------LRNIQVTNHSQLF 120
Query: 62 VREGSNVSMRCAA-SGSPPPSIMWRREGGEMITNS 95
+ + C+ S W G + +
Sbjct: 121 QNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQP 155
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 37.7 bits (88), Expect = 2e-04
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGE 90
+ S + D G V + C S ++ W + G E
Sbjct: 3 SGSSGIMVTKQL--EDTTAYCGERVELECEVSE-DDANVKWFKNGEE 46
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 37.7 bits (88), Expect = 2e-04
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
P + + EG+ +RC S P + W + G E + +
Sbjct: 19 PIKFTEGL--RNEEATEGATAVLRCELSKMAP--VEWWK-GHETLRDG 61
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 37.4 bits (87), Expect = 2e-04
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSF 96
P I + + + G+P P++ W G + + +
Sbjct: 4 APTITFLES-----PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKY 47
Score = 26.6 bits (59), Expect = 1.6
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 1 MTEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
+ + + G Y IA N G K+I
Sbjct: 66 LDNPTHMNNGDYTLIAKNEYG---KDEKQISAHFM 97
Score = 26.6 bits (59), Expect = 2.0
Identities = 5/39 (12%), Positives = 9/39 (23%), Gaps = 3/39 (7%)
Query: 99 TVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTR 137
P + + L + + PK W
Sbjct: 2 HFAPTI---TFLESPTSDHHWCIPFTVKGNPKPALQWFY 37
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 39.1 bits (90), Expect = 2e-04
Identities = 16/92 (17%), Positives = 25/92 (27%), Gaps = 22/92 (23%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+V + G Y C V K+ + ++ P L
Sbjct: 89 QDVQKADEGIYTCEIRLKNESMVMKK-----------PVELWVLPEEPRDL--------R 129
Query: 62 VREGSNVSMRCAASGSPPP---SIMWRREGGE 90
VR G MRC+ + + W G
Sbjct: 130 VRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGS 161
Score = 36.4 bits (83), Expect = 0.002
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 45 SSMPPDILDYPTSSDIMVREGSNVSMRC---AASGSPPPSIMWRREGGE 90
S P + +S + V G +V M C + W +
Sbjct: 2 SQGLPGLTV--SSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDK 48
Score = 26.4 bits (57), Expect = 4.7
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 99 TVPPIVKIPSQLIGAHEGQQLVLECI---SEAYPKSVNYWTREKGD 141
P + + S + H G+ +++ C+ +E W K
Sbjct: 3 QGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDK 48
Score = 25.2 bits (54), Expect = 8.8
Identities = 9/29 (31%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIV 32
V G Y C G K I+L V
Sbjct: 208 VKESDQGIYTCSIYVG-KLESRKTIVLHV 235
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 38.5 bits (89), Expect = 3e-04
Identities = 19/100 (19%), Positives = 28/100 (28%), Gaps = 19/100 (19%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
V+ G YLC +G + L V D+
Sbjct: 90 VTASDSGKYLCYFQDG-DFYEKALVELKVAALG-----------------SDLHVDVKGY 131
Query: 64 EGSNVSMRCAASG-SPPPSIMWRREGGEMITNSFNNTVPP 102
+ + + C ++G P P I W GE I V
Sbjct: 132 KDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVAD 171
Score = 27.4 bits (60), Expect = 1.9
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 57 SSDIMVREGSNVSMRCAASGSPPPSIM---WRREGGEMITNSFNN 98
S I+ G + + C + M W + N + +
Sbjct: 11 SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYAD 55
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 37.4 bits (87), Expect = 3e-04
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
I+ + V + C P + W ++G E + S
Sbjct: 11 SSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEE-VVES 56
Score = 25.1 bits (55), Expect = 6.7
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 93 TNSFNNTVPPIVKIPSQL--IGAHEGQQLVLEC-ISEAYPKSVNYWTREKGDMIANGK 147
+ S V + PS + A +++VL C + + + V WT++ G+ +
Sbjct: 3 SGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCRPWAE-VR-WTKD-GEEVVESP 57
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 37.9 bits (88), Expect = 4e-04
Identities = 15/102 (14%), Positives = 28/102 (27%), Gaps = 23/102 (22%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
VS+E G Y + +I + V S ++
Sbjct: 74 YNVSKEDRGDYYMRMLHE--TEDQWKITMEVY--------------------EMVSKPMI 111
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPI 103
E SN ++ C + + G E + + T+
Sbjct: 112 YWECSNATLTCEVLEGTDVELKLYQ-GKEHLRSLRQKTMSYQ 152
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 36.5 bits (85), Expect = 4e-04
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ V G S P W+ + G+ + S
Sbjct: 13 YGVEVFVGETAHFEIELS-EPDVHGQWKLK-GQPLAAS 48
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 36.9 bits (85), Expect = 5e-04
Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSP---PPSIMWRREGGEMITNS 95
+ S ++ P V+ G +++ P+I W + + +
Sbjct: 3 SGSSGILFIEKP--QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASK 55
Score = 25.0 bits (54), Expect = 9.1
Identities = 3/17 (17%), Positives = 5/17 (29%)
Query: 2 TEVSREHMGAYLCIASN 18
+ G Y C +
Sbjct: 80 IKAKDNFAGNYRCEVTY 96
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 37.5 bits (87), Expect = 6e-04
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 18/93 (19%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSV----SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPT 56
M+ V+ H G Y C S+ P+ S ++++V + P +L +P
Sbjct: 78 MSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVT----------GNHRKPSLLAHPG 127
Query: 57 SSDIMVREGSNVSMRCAASGSPPPSIMWRREGG 89
+V+ G V ++C S +EG
Sbjct: 128 P---LVKSGERVILQC-WSDIMFEHFFLHKEGI 156
Score = 33.3 bits (76), Expect = 0.017
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 18/94 (19%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSV----SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPT 56
+ + G Y C S P S + ++V Y P + P
Sbjct: 178 IGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPY----------EKPSLSAQPG 227
Query: 57 SSDIMVREGSNVSMRCAASGSPPPSIMWRREGGE 90
V+ G +V++ C +S S REGG
Sbjct: 228 P---KVQAGESVTLSC-SSRSSYDMYHLSREGGA 257
Score = 26.0 bits (57), Expect = 6.4
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREGG 89
+V G +V++RC + M +E
Sbjct: 34 VVPRGGHVTLRCHYR-HRFNNFMLYKEDR 61
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 37.1 bits (86), Expect = 7e-04
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSV-SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
+ ++ ++ G Y C + V S S + L++ Y P + P+
Sbjct: 62 IPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAY----------SKPTLSALPSP-- 109
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGG 89
+V G +V++ C S SP + + +E
Sbjct: 110 -LVTSGKSVTLLC-QSRSPMDTFLLCKERA 137
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 36.8 bits (85), Expect = 0.001
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 13/89 (14%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ +++ G Y CI G S ++ +V + + + S P
Sbjct: 64 IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTL--SVHPG----------P 111
Query: 61 MVREGSNVSMRCAASGSPPPSIMWRREGG 89
V G V+ C + + +EG
Sbjct: 112 EVISGEKVTFYC-RLDTATSMFLLLKEGR 139
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain
C2; IG domain, structural protein; NMR {Homo sapiens}
SCOP: b.1.1.4
Length = 104
Score = 35.8 bits (83), Expect = 0.001
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
V +G + + + + W + G+ I S
Sbjct: 28 VSKGHKIRLTVELAD-HDAEVKWLKN-GQEIQMS 59
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 35.1 bits (81), Expect = 0.002
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 3/52 (5%)
Query: 44 TSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ S V +G V + P + W + G+ I S
Sbjct: 3 SGSSGAAFAK-ILDPAYQVDKGGRVRFVVELA-DPKLEVKWYK-NGQEIRPS 51
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 36.1 bits (83), Expect = 0.002
Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 18/92 (19%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSV----SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPT 56
+ + ++ G Y C S P S + +++ Y P + P
Sbjct: 66 IGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYE----------KPSLSAQPG 115
Query: 57 SSDIMVREGSNVSMRCAASGSPPPSIMWRREG 88
V G +V++ C +S S REG
Sbjct: 116 P---TVLAGESVTLSC-SSRSSYDMYHLSREG 143
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 35.6 bits (82), Expect = 0.003
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 18/93 (19%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKR---IMLIVQCQYFSKLYIYTSSMPPDILDYPTS 57
+ ++ EH G Y C + S+ + L+V Y + P + P+
Sbjct: 62 IPSITWEHTGRYRCYYGSD-TAGRSESSDPLELVVTGAY----------IKPTLSAQPSP 110
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGE 90
+V G NV+++C S + +EG +
Sbjct: 111 ---VVNSGGNVTLQC-DSQVAFDGFILCKEGED 139
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 35.6 bits (82), Expect = 0.003
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 15/90 (16%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSV-SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
+ +++ G Y CI G S S + L+V Y P + +P
Sbjct: 61 IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMY----------DTPTLSVHPGP-- 108
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGG 89
V G V+ C + + +EG
Sbjct: 109 -EVISGEKVTFYC-RLDTATSMFLLLKEGR 136
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR,
VEGF receptor, cancer, immune system-transfer complex;
HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 34.7 bits (79), Expect = 0.003
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 56 TSSDIMVREGSNVSMRCAASGSPPPSIMWRRE 87
S I + G + + C A I + E
Sbjct: 14 PSHGIELSVGEKLVLNCTARTELNVGIDFNWE 45
Score = 29.3 bits (65), Expect = 0.22
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 98 NTVPPIVKIPSQLIGAHEGQQLVLECISEAYPKSVNYWTREK 139
+ +V PS I G++LVL C + + E
Sbjct: 5 YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEY 46
Score = 27.8 bits (61), Expect = 0.95
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
V+R G Y C AS+G+ + + V
Sbjct: 79 DGVTRSDQGLYTCAASSGL-MTKKNSTFVRVH 109
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 34.8 bits (80), Expect = 0.003
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTV 100
PP ++ + G+PPP++ W G + + +
Sbjct: 8 PPRVVSLEEPE-----LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVE 55
Score = 26.7 bits (59), Expect = 2.2
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 2 TEVSREHMGAYLCIASN--GVPPSVSKRIMLIVQ 33
+ + + G Y IA N G + ++ I
Sbjct: 70 NKPTHYNNGNYTLIAKNPLG---TANQTINGHFL 100
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 35.6 bits (81), Expect = 0.003
Identities = 18/137 (13%), Positives = 42/137 (30%), Gaps = 19/137 (13%)
Query: 4 VSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVR 63
+ + +C ++ Q + L +Y + ++ P+
Sbjct: 55 SNVQEDSQPMCYSNCPDG-----------QSTAKTFLTVYWTPERVELAPLPSW----QP 99
Query: 64 EGSNVSMRCAASGSPPP---SIMWRREGGEMITNSFNNTVPPIVKIPSQLIGAHEGQQLV 120
G N+++RC G P +++ R G + + P V + H G
Sbjct: 100 VGKNLTLRCQVEGGAPRANLTVVLLR-GEKELKREPAVGEPAEVTTTVLVRRDHHGANFS 158
Query: 121 LECISEAYPKSVNYWTR 137
+ P+ + +
Sbjct: 159 CRTELDLRPQGLELFEN 175
Score = 34.4 bits (78), Expect = 0.008
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 8/84 (9%)
Query: 4 VSREHMGA-YLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMV 62
V R+H GA + C + P + +L + P L P +
Sbjct: 148 VRRDHHGANFSCRTELDLRPQGLELFENTSAPY---QLQTFVLPATPPQLVSPRV----L 200
Query: 63 REGSNVSMRCAASGSPPPSIMWRR 86
+ ++ C+ G P S
Sbjct: 201 EVDTQGTVVCSLDGLFPVSEAQVH 224
Score = 31.4 bits (70), Expect = 0.091
Identities = 16/106 (15%), Positives = 26/106 (24%), Gaps = 36/106 (33%)
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRRE------------------------------ 87
S +++ G +V + C+ S P +
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCY 66
Query: 88 ---GGEMITNSFNNTV---PPIVKIPSQLIGAHEGQQLVLECISEA 127
T TV P V++ G+ L L C E
Sbjct: 67 SNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEG 112
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 34.9 bits (79), Expect = 0.004
Identities = 12/103 (11%), Positives = 27/103 (26%), Gaps = 13/103 (12%)
Query: 4 VSREHMGAYLCIASNG-----------VPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDIL 52
+++ G Y C S +K+ S ++
Sbjct: 56 NAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMG 115
Query: 53 DYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNS 95
+ + G+ V + C P I+W+ + +
Sbjct: 116 GITQTPYKVSISGTTVILTCPQY--PGSEILWQHNDKNIGGDE 156
Score = 29.9 bits (66), Expect = 0.25
Identities = 6/44 (13%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 63 REGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPPIVKI 106
+E +V + C + +I W ++G + + + +
Sbjct: 16 QEDGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKKKWNLGSN 56
Score = 26.0 bits (56), Expect = 5.0
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 7 EHMGAYLCIASNGVPPSVSKRIML 30
E G Y+C P + + L
Sbjct: 177 EQSGYYVCYPRGSKPEDANFYLYL 200
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 33.8 bits (77), Expect = 0.005
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 58 SDIMVREGSNVSMRCAASGSP---PPSIMWRR 86
D V G +++ +G+ PP + W +
Sbjct: 12 QDGEVTVGGSITFSARVAGASLLKPPVVKWFK 43
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 34.0 bits (77), Expect = 0.006
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 54 YPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMIT 93
P +SD V G V ++C S+ W + +
Sbjct: 42 QPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLY 81
Score = 27.4 bits (60), Expect = 1.4
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 113 AHEGQQLVLECISEAYPKSVNYWTREKGDMIANGKTPF 150
G +VL+C + + S W+ + G+
Sbjct: 50 VVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRA 87
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 34.8 bits (80), Expect = 0.007
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGE 90
V EG + + C S PP + W ++ E
Sbjct: 490 YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRE 522
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 34.4 bits (78), Expect = 0.008
Identities = 12/110 (10%), Positives = 34/110 (30%), Gaps = 22/110 (20%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
+ + E+ G+Y + + + + +++ + P
Sbjct: 57 ADATSENAGSYKVTVQDTDTMTSVESEVFLMEEA-----------ELIVNITEP--QHFY 103
Query: 62 VREGSNVSMRC---AASGSPPP-----SIMWRREGGEMITNSFNNTVPPI 103
V ++V + + G P W + G ++I + + T+
Sbjct: 104 VSSQTDVELHATVKFSGGKTPADNYELHYSWSK-GEDVIDTTQDITIQEF 152
Score = 33.6 bits (76), Expect = 0.014
Identities = 15/99 (15%), Positives = 27/99 (27%), Gaps = 26/99 (26%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
E + + G Y S + + +D
Sbjct: 150 QEFTADKNGVYTVKVWGESEDSAAS--------------ASTKIMLATMNVDQDVVESKT 195
Query: 62 VREGSNVSMRCA--------ASGSPPPSIMW----RREG 88
V G+ +S+ +SG P +I + +REG
Sbjct: 196 VALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREG 234
Score = 33.6 bits (76), Expect = 0.016
Identities = 5/46 (10%), Positives = 13/46 (28%), Gaps = 6/46 (13%)
Query: 47 MPPDILDYPTSSDIMVREGSNVSMRCAASGSPPP----SIMWRREG 88
M + + G ++ +G P + W ++
Sbjct: 1 MAFTVSIQS--NKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDD 44
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 33.6 bits (77), Expect = 0.012
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 15/90 (16%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSV-SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
+ + R G Y C NG S+ S ++ L+ + P + P
Sbjct: 56 IPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVF----------AKPSLSAQPGP-- 103
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGG 89
V G +V+++C + +EG
Sbjct: 104 -AVSSGGDVTLQC-QTRYGFDQFALYKEGD 131
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 33.3 bits (76), Expect = 0.014
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 15/103 (14%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSV-SKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSD 59
+ ++ H G Y C + S S + L+V Y P + P+
Sbjct: 62 IPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFY----------NKPTLSALPSP-- 109
Query: 60 IMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPP 102
+V G NV+++C S + EG ++ + ++ + P
Sbjct: 110 -VVTSGENVTLQC-GSRLRFDRFILTEEGDHKLSWTLDSQLTP 150
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 33.3 bits (75), Expect = 0.017
Identities = 14/103 (13%), Positives = 26/103 (25%), Gaps = 16/103 (15%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ + E G+Y G S + + L + PDI
Sbjct: 86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKL-------NLEVTALIEKPDI-----HFLE 133
Query: 61 MVREGSNVSMRC----AASGSPPPSIMWRREGGEMITNSFNNT 99
+ G + C + PP + W + +
Sbjct: 134 PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRS 176
Score = 27.5 bits (60), Expect = 1.9
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 13/68 (19%)
Query: 58 SDIMVREGSNVSMRC-------AASGSPPPSIMWRREGGE------MITNSFNNTVPPIV 104
+ V+EG V + C + SPP + W R+G + TN+ + V P
Sbjct: 8 KSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPET 67
Query: 105 KIPSQLIG 112
+ +L+G
Sbjct: 68 QGRFRLLG 75
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 32.9 bits (74), Expect = 0.029
Identities = 4/40 (10%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 57 SSDIMVREGSNVSMRC-AASGSPPPSIMWRREGGEMITNS 95
+ G +V++ C ++ W ++
Sbjct: 13 RGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP 52
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 32.2 bits (73), Expect = 0.038
Identities = 12/101 (11%), Positives = 26/101 (25%), Gaps = 24/101 (23%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIM 61
++ Y + N + + L V S ++
Sbjct: 65 YNLTSSDEDEYEMESPNITD---TMKFFLYVL--------------------EMVSKPMI 101
Query: 62 VREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPP 102
E SN ++ C + + G E + + T+
Sbjct: 102 YWECSNATLTCEVLEGTDVELKLYQ-GKEHLRSLRQKTMSY 141
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens}
SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 31.1 bits (70), Expect = 0.066
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 46 SMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT 99
S P + T+ E + + + G P PS+ W G + SF T
Sbjct: 1 SHMPASVQLHTAV-----EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFT 49
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 31.4 bits (70), Expect = 0.089
Identities = 8/60 (13%), Positives = 21/60 (35%)
Query: 42 IYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVP 101
+ S PD D ++ GS+++ C + +++ + + N +
Sbjct: 190 VKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIK 249
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell
membrane, disulfide bond, glycoprotein, immunoglobulin
domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC;
3.60A {Homo sapiens}
Length = 589
Score = 31.1 bits (70), Expect = 0.11
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 7/41 (17%)
Query: 58 SDIMVREGSNVSMRCAAS-------GSPPPSIMWRREGGEM 91
+V+ SN + C I+W+ +
Sbjct: 11 ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTI 51
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A
{Mus musculus} PDB: 3c60_A
Length = 200
Score = 30.4 bits (68), Expect = 0.15
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 56 TSSDIMVREGSNVSMRCAASGSPPPSIMW 84
+ + E + + C S + P++ W
Sbjct: 6 MQGQVTLSENDFLFINCTYSTTGYPTLFW 34
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.4 bits (68), Expect = 0.17
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 63 REGSNVSMRCAASGSPPPSIMWRREGGEMI 92
N+ + C PP I+ R G+++
Sbjct: 15 GPNLNIVLTCPECKVYPPKIVERFSEGDVV 44
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region;
superagonist peptide T-cell vaccines, transmembrane,
immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D
2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D*
3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 30.0 bits (67), Expect = 0.20
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMW 84
+ + V EG N+ + C+ + S ++ W
Sbjct: 8 AALSVPEGENLVLNCSFTDSAIYNLQW 34
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor
system; 2.75A {Mus musculus}
Length = 256
Score = 29.7 bits (67), Expect = 0.27
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 56 TSSDIMVREGSNVSMRCAASGSPPPSIMW 84
+ + V EG+++ +RC S S P + W
Sbjct: 9 PDARVTVSEGASLQLRCKYSYSATPYLFW 37
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 29.6 bits (66), Expect = 0.29
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 56 TSSDIMVREGSNVSMRCAASGSPPPSIMW 84
T + + EG V + C + P + W
Sbjct: 7 TEGLVTLTEGLPVMLNCTYQSTYSPFLFW 35
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 30.1 bits (67), Expect = 0.29
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT 99
++ V G + +C+A G +G ++
Sbjct: 172 QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEI 213
Score = 26.7 bits (58), Expect = 4.3
Identities = 3/26 (11%), Positives = 9/26 (34%)
Query: 64 EGSNVSMRCAASGSPPPSIMWRREGG 89
+++ + P + +W G
Sbjct: 90 PPGLLNVYVKVNNGPLGNPIWNISGD 115
Score = 25.9 bits (56), Expect = 8.0
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 2 TEVSREHMGAYLCIASNGVPPSVSKRIMLIVQ 33
++ G Y C+ +S L+V+
Sbjct: 228 VNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 259
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 29.7 bits (66), Expect = 0.30
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 56 TSSDIMVREGSNVSMRCAASGSPPPSIMW 84
+ ++VR+G N ++C S +P + W
Sbjct: 7 SPQSLVVRQGENCVLQCNYSVTPDNHLRW 35
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I
3e2h_B 3e3q_D
Length = 226
Score = 29.6 bits (66), Expect = 0.31
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 56 TSSDIMVREGSNVSMRCAASGSPPPSIMW 84
+ + V EG+++ +RC S S P + W
Sbjct: 15 PDARVTVSEGASLQLRCKYSYSATPYLFW 43
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 29.5 bits (65), Expect = 0.34
Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 23/101 (22%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDI 60
+ S G +C+ S G + + L+V + P + P
Sbjct: 63 VRNASLSAAGTRVCVGSCG-GRTFQHTVQLLVY------------AFPNQLTVSPA---- 105
Query: 61 MVREGSNVSMRCAASGSPPP-----SIMWRREGGEMITNSF 96
+ + C A P S G E+
Sbjct: 106 -ALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQA 145
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus}
SCOP: b.1.1.1 b.1.1.2
Length = 185
Score = 29.1 bits (65), Expect = 0.43
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 56 TSSDIMVREGSNVSMRCAASGSPPPSIMW 84
+ + V EG + C+ S W
Sbjct: 6 SPQSLTVWEGETAILNCSYEDSTFDYFPW 34
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 29.2 bits (65), Expect = 0.45
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 56 TSSDIMVREGSNVSMRCAASGSPPPSIMW 84
+ +++ EG N +++C + SP ++ W
Sbjct: 9 SPQSLIILEGKNCTLQCNYTVSPFSNLRW 37
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable
domain, human constant...; natural killer T cell
receptor, immune system; 1.60A {Mus musculus} PDB:
4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D
3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D
2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 29.2 bits (65), Expect = 0.45
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 56 TSSDIMVREGSNVSMRCAASGSPPPSIMW 84
+ + V EG S+ C +S W
Sbjct: 8 SPESLSVPEGGMASLNCTSSDRNFQYFWW 36
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 28.4 bits (64), Expect = 0.49
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 56 TSSDIMVREGSNVSMRCAASGSPP-PSIMWRRE--GGEM 91
+S D V GS V + C P + W R
Sbjct: 6 SSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSF 44
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human
cytomegalovirus, PP65, T cell receptor (TCR), immune
response, public response; 2.80A {Homo sapiens}
Length = 199
Score = 28.7 bits (64), Expect = 0.52
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMW 84
+ V+EG + + C+ S ++ W
Sbjct: 8 QSLHVQEGDSTNFTCSFPSSNFYALHW 34
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 28.0 bits (62), Expect = 0.58
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNTVPP 102
D+ V +G + S W G E+ +N V P
Sbjct: 16 EDVQVYDGEDAVFSLDLSTIIQG--TWFLNGEELKSNEPEGQVEP 58
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 28.6 bits (64), Expect = 0.68
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 56 TSSDIMVREGSNVSMRCAASGSPPPSIMW 84
+ ++ + GS+ + C + I W
Sbjct: 8 RTKSVIRQTGSSAEITCDLAEGSTGYIHW 36
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.91
Identities = 26/167 (15%), Positives = 45/167 (26%), Gaps = 59/167 (35%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSK-LYIYTSSMPPDILD-YPTSS 58
T +S +H S + P K + K L +P ++L P
Sbjct: 286 TTHISLDHH-------SMTLTPDEVKSL--------LLKYLDCRPQDLPREVLTTNP--- 327
Query: 59 DIMVREGSNVSMRCAASGSPPPSIM--WRREGGE----MITNSFNNTVPPI--------- 103
+S+ A S + W+ + +I +S N P
Sbjct: 328 --RR-----LSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 104 -----VKIPSQLIG-------AHEGQQLVLECIS----EAYPKSVNY 134
IP+ L+ + +V + E PK
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 28.3 bits (62), Expect = 1.0
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 7/38 (18%)
Query: 58 SDIMVREGSNVSMRC-------AASGSPPPSIMWRREG 88
+V+ SN + C I+W+
Sbjct: 12 ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNH 49
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 27.1 bits (60), Expect = 1.5
Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 52 LDYPTSSDIMVREGSNVSMRC------AASGSPPPSIMWRREG----GEMITNSFNNTVP 101
+ P + + GS + + C S + +W + +I + V
Sbjct: 4 VSSPKN--VQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVD 61
Query: 102 PIVKIPSQLIGAHEGQQLVLECISEAYPK 130
+ ++L+G + + L + + P+
Sbjct: 62 KRFRGRAELMGNMDHKVCNLL-LKDLKPE 89
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 27.6 bits (60), Expect = 1.7
Identities = 11/88 (12%), Positives = 23/88 (26%), Gaps = 5/88 (5%)
Query: 54 YPTSSDIMVREGSNVSMRCAAS-----GSPPPSIMWRREGGEMITNSFNNTVPPIVKIPS 108
+ + S +V G ++ C P P I+WR +
Sbjct: 4 HISVSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESII 63
Query: 109 QLIGAHEGQQLVLECISEAYPKSVNYWT 136
L + Q + ++ +
Sbjct: 64 TLPHLNHTQAFLSCSLNWGNSLQILDQV 91
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 27.2 bits (60), Expect = 2.1
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 62 VREGSNVSMRCAASGSPPPSIM-WRREGG---EMITNSFNNTVPPIVKIP 107
V G + + C + P + W R G E+I N P + +
Sbjct: 15 VAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVS 64
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 27.2 bits (60), Expect = 2.1
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMW 84
+++ EG+ V + C S + W
Sbjct: 7 TEMTATEGAIVQINCTYQTSGFNGLFW 33
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 26.8 bits (58), Expect = 2.7
Identities = 12/102 (11%), Positives = 23/102 (22%), Gaps = 12/102 (11%)
Query: 7 EHMGAYLCIASNG---------VPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTS 57
E G Y+C + + +K
Sbjct: 55 EDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLV 114
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMWRREGGEMITNSFNNT 99
R +V + C G +I W ++G + +
Sbjct: 115 QVDGSRGDGSVLLTC---GLTDKTIKWLKDGSIISPLNATKN 153
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase;
1.04A {Enterobacteria phage P22} PDB: 2anx_A
Length = 146
Score = 26.3 bits (58), Expect = 2.9
Identities = 6/28 (21%), Positives = 8/28 (28%), Gaps = 6/28 (21%)
Query: 109 QLIGAHEGQQLVLECISEAYPKSVNYWT 136
+ EG +AY S T
Sbjct: 10 TRLKREEG------ERLKAYSDSRGIPT 31
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM;
1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Length = 591
Score = 26.6 bits (58), Expect = 3.5
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 30 LIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASGSPP 79
++ + + S L IYT+++P + Y D + R G ++ + A PP
Sbjct: 515 VVWRTEDSSALRIYTTTIPTEHRLYTLMHDPVYRLG--IAWQNIAYNQPP 562
>2pv4_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.95A {Shewanella amazonensis} SCOP:
a.286.1.1
Length = 145
Score = 25.9 bits (56), Expect = 4.2
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 86 REGGEMITNSFNNTVPPIVKIPSQLIGAHEG 116
R + + + V + ++P L+ A+
Sbjct: 10 RALAQQVADKVAGRVIALDRLPESLLTAYRS 40
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 26.5 bits (58), Expect = 4.2
Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 11/74 (14%)
Query: 20 VPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMVREGSNVSMRCAASG-SP 78
VP + S + S P + D + GS ++ C +G
Sbjct: 225 VPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALED--------LLLGSEANLTCTLTGLRD 276
Query: 79 PP--SIMWRREGGE 90
+ W G+
Sbjct: 277 ASGVTFTWTPSSGK 290
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 26.1 bits (56), Expect = 5.0
Identities = 15/91 (16%), Positives = 21/91 (23%), Gaps = 17/91 (18%)
Query: 3 EVSREHMGAYLCIASNGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTSSDIMV 62
V G YL + L V PP + P +
Sbjct: 260 RVQPFQEGTYLATIHLP-YLQGQVTLELAVY-------------KPPKVSLMPATLARAA 305
Query: 63 REGSNVSMRCAASGSPPP---SIMWRREGGE 90
+ + C S P + W GG
Sbjct: 306 PGEAPPELLCLVSHFYPSGGLEVEWELRGGP 336
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo
sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E
3mfg_B 2ij0_E
Length = 246
Score = 26.0 bits (57), Expect = 5.1
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 56 TSSDIMVREGSNVSMRCAASGSPPPSIMW 84
S ++ + G++V + C + ++ W
Sbjct: 7 HPSWVISKSGTSVKIECRSLDFQATTMFW 35
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 26.2 bits (57), Expect = 5.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 38 SKLYIYTSSMPPDILDYPTSSDIM 61
SK+Y+ T S P DI Y S+ +
Sbjct: 202 SKIYVSTDSNPVDIQMYEVCSEFI 225
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell
immunoglobulin mucin, signaling protein; 1.95A {Mus
musculus} PDB: 3kaa_A*
Length = 109
Score = 25.3 bits (55), Expect = 5.4
Identities = 5/33 (15%), Positives = 10/33 (30%), Gaps = 3/33 (9%)
Query: 60 IMVREGSNVSMRCAASGSPPP---SIMWRREGG 89
V G N + C+ + + W +
Sbjct: 4 YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFC 36
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 25.3 bits (55), Expect = 5.9
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 54 YPTSSDIMVREGSNVSMRCAAS-GSPPPSIMWRREGGEMITNSFNNTVP 101
+ V GSNV++ + S + W + I +
Sbjct: 8 QGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSK 56
>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*
Length = 112
Score = 25.0 bits (55), Expect = 6.5
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 62 VREGSNVSMRCAASGSPPPSIMWRR----EGGEMITNSFNNTVPPIVKIPSQLIGAHEGQ 117
V G V++RC S P + W + + + + + + +P A
Sbjct: 13 VPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVT 72
Query: 118 QLVLE 122
L
Sbjct: 73 DTELR 77
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 25.5 bits (56), Expect = 7.0
Identities = 10/87 (11%), Positives = 19/87 (21%), Gaps = 5/87 (5%)
Query: 1 MTEVSREHMGAYLCIAS---NGVPPSVSKRIMLIVQCQYFSKLYIYTSSMPPDILDYPTS 57
+ + Y C + + + + P S
Sbjct: 77 LELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQS 136
Query: 58 SDIMVREGSNVSMRCAASGSPPPSIMW 84
+ V EG + C+ S W
Sbjct: 137 --LTVWEGETAILNCSYENSAFDYFPW 161
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 25.2 bits (55), Expect = 7.2
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 5/57 (8%)
Query: 56 TSSDIMVREGSNVSMRCAASGSPPPS-----IMWRREGGEMITNSFNNTVPPIVKIP 107
+ + G +V++ C + W R G F+ T P
Sbjct: 6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 25.2 bits (55), Expect = 7.3
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 54 YPTSSDIMVREGSNVSMRCAASGSP 78
T ++EG + ++C +
Sbjct: 8 KLTEEKYELKEGQTLDVKCDYTLEK 32
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 25.6 bits (56), Expect = 7.7
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 56 TSSDIMVREGSNVSMRCAASGSPPPSIMW 84
S ++ + G++V + C + ++ W
Sbjct: 30 HPSWVISKSGTSVKIECRSLDFQATTMFW 58
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 24.7 bits (54), Expect = 7.7
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 1 MTEVSREHMGAYLCIASNGVPPSVSKR 27
+ E G Y C P S +
Sbjct: 60 FAVTNLEDAGTYQCRYQVSEPLWTSNQ 86
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 24.9 bits (54), Expect = 9.7
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 4/47 (8%)
Query: 55 PTSSDIMVREGSNVSMRCAASGSPPPSIM---WRREGGEMITNSFNN 98
P I G + C S + M W R + + + N
Sbjct: 12 PGHP-IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRN 57
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 25.4 bits (55), Expect = 9.7
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 48 PPDILDYPTSSDIMVREGSNVSMRCAASGSPPPSI--MWRREGGEMITNSFNNTV 100
PP + +S D + + C SG P +I W +G M + +
Sbjct: 7 PPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTAST 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.401
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,325,403
Number of extensions: 124248
Number of successful extensions: 1241
Number of sequences better than 10.0: 1
Number of HSP's gapped: 993
Number of HSP's successfully gapped: 705
Length of query: 151
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,328,508
Effective search space: 285681528
Effective search space used: 285681528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)