BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16424
         (295 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CXH|A Chain A, Crystal Structure Of Probable Ribosomal Biogenesis Protein
           From Aeropyrum Pernix K1
          Length = 217

 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%)

Query: 87  RWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTD 146
           R +G+   +I++TTSR PS R++ FVK+L    P + R  RG+Y  ++L           
Sbjct: 27  RPSGVGGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSXEELAREAIIRGADR 86

Query: 147 FIVVHEHRGIPDTL 160
            +VV E RG P  +
Sbjct: 87  IVVVGERRGNPGII 100


>pdb|1W94|A Chain A, Crystal Structure Of Mil (Mth680), An Archaeal Imp4-Like
           Protein
 pdb|1W94|B Chain B, Crystal Structure Of Mil (Mth680), An Archaeal Imp4-Like
           Protein
          Length = 156

 Score = 28.5 bits (62), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 97  MITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGI 156
           ++TTSR PS R + F + L  I    + +NRG   ++ ++   R        VV E  G 
Sbjct: 3   LLTTSRKPSQRTRSFSQRLSRIX-GWRYINRGKXSLRDVLIEARG----PVAVVSERHGN 57

Query: 157 P 157
           P
Sbjct: 58  P 58


>pdb|1IKQ|A Chain A, Pseudomonas Aeruginosa Exotoxin A, Wild Type
          Length = 613

 Score = 27.3 bits (59), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 28/68 (41%)

Query: 97  MITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGI 156
           ++    +  S +K+F+ EL      S        EM   + A  A D T F+  HE   +
Sbjct: 102 LVPIGHEKPSNIKVFIHELNAGNQLSHMSPIYTIEMGDELLAKLARDATFFVRAHESNEM 161

Query: 157 PDTLVICH 164
             TL I H
Sbjct: 162 QPTLAISH 169


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,036,104
Number of Sequences: 62578
Number of extensions: 374355
Number of successful extensions: 809
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 808
Number of HSP's gapped (non-prelim): 8
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)