BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16424
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R947|IMP4_PONAB U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii
GN=IMP4 PE=2 SV=2
Length = 291
Score = 370 bits (951), Expect = e-102, Method: Compositional matrix adjust.
Identities = 170/273 (62%), Positives = 217/273 (79%), Gaps = 12/273 (4%)
Query: 12 YLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAVSIG 71
YLYRK+ EE QR+ QE+K+RLR++L+ N+ IPT+L+ +AL+LQ L+++D G E
Sbjct: 12 YLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFDDAGGE------ 65
Query: 72 TETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYE 131
G +H DDEYRWAG+EDPK+MITTSRDPSSRLKMF KEL+L+FP +QRMNRG +E
Sbjct: 66 -----GVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120
Query: 132 MKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMS 191
+ L+ AC+AN VTD +VVHEHRG P L++ HLP+GPTAYFT+ +V+MRHDIPDLGTMS
Sbjct: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS 180
Query: 192 EQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKR-DGK 250
E PHL+ H F ++LG+RV IL+YLFPVPK+DS R++TFAN DDYISFRHH YK+ D +
Sbjct: 181 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR 240
Query: 251 DIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
++EL EVGPRF+LKLY I+LGTL+ AD EW
Sbjct: 241 NVELTEVGPRFELKLYMIRLGTLEQEATADVEW 273
>sp|Q96G21|IMP4_HUMAN U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens
GN=IMP4 PE=1 SV=1
Length = 291
Score = 370 bits (951), Expect = e-102, Method: Compositional matrix adjust.
Identities = 170/273 (62%), Positives = 217/273 (79%), Gaps = 12/273 (4%)
Query: 12 YLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAVSIG 71
YLYRK+ EE QR+ QE+K+RLR++L+ N+ IPT+L+ +AL+LQ L+++D G E
Sbjct: 12 YLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFDDAGGE------ 65
Query: 72 TETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYE 131
G +H DDEYRWAG+EDPK+MITTSRDPSSRLKMF KEL+L+FP +QRMNRG +E
Sbjct: 66 -----GVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120
Query: 132 MKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMS 191
+ L+ AC+AN VTD +VVHEHRG P L++ HLP+GPTAYFT+ +V+MRHDIPDLGTMS
Sbjct: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS 180
Query: 192 EQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKR-DGK 250
E PHL+ H F ++LG+RV IL+YLFPVPK+DS R++TFAN DDYISFRHH YK+ D +
Sbjct: 181 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR 240
Query: 251 DIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
++EL EVGPRF+LKLY I+LGTL+ AD EW
Sbjct: 241 NVELTEVGPRFELKLYMIRLGTLEQEATADVEW 273
>sp|Q5PQR5|IMP4_RAT U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus
norvegicus GN=Imp4 PE=2 SV=1
Length = 291
Score = 370 bits (950), Expect = e-102, Method: Compositional matrix adjust.
Identities = 169/273 (61%), Positives = 218/273 (79%), Gaps = 12/273 (4%)
Query: 12 YLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAVSIG 71
YLYRK+ EE QR++QEKK+R++++L+ N+ IPT+L+ +AL+LQ L+++D G E
Sbjct: 12 YLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFDDAGGE------ 65
Query: 72 TETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYE 131
G +H DDEYRWAG+EDPK+MITTSRDPSSRLKMF KEL+L+FP +QRMNRG +E
Sbjct: 66 -----GVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120
Query: 132 MKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMS 191
+ L+ AC+AN VTD +VVHEHRG P L++ HLP+GPTAYFT+ +V+MRHDIPDLGTMS
Sbjct: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS 180
Query: 192 EQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKR-DGK 250
E PHL+ H F ++LG+RV IL+YLFPVPK+DS R++TFAN DDYISFRHH YK+ D +
Sbjct: 181 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR 240
Query: 251 DIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
++EL EVGPRF+LKLY I+LGTL+ AD EW
Sbjct: 241 NVELTEVGPRFELKLYMIRLGTLEQEATADVEW 273
>sp|Q8VHZ7|IMP4_MOUSE U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus
GN=Imp4 PE=2 SV=1
Length = 291
Score = 370 bits (950), Expect = e-102, Method: Compositional matrix adjust.
Identities = 169/273 (61%), Positives = 218/273 (79%), Gaps = 12/273 (4%)
Query: 12 YLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAVSIG 71
YLYRK+ EE QR++QEKK+R++++L+ N+ IPT+L+ +AL+LQ L+++D G E
Sbjct: 12 YLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFDDAGGE------ 65
Query: 72 TETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYE 131
G +H DDEYRWAG+EDPK+MITTSRDPSSRLKMF KEL+L+FP +QRMNRG +E
Sbjct: 66 -----GVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120
Query: 132 MKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMS 191
+ L+ AC+AN VTD +VVHEHRG P L++ HLP+GPTAYFT+ +V+MRHDIPDLGTMS
Sbjct: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS 180
Query: 192 EQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKR-DGK 250
E PHL+ H F ++LG+RV IL+YLFPVPK+DS R++TFAN DDYISFRHH YK+ D +
Sbjct: 181 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR 240
Query: 251 DIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
++EL EVGPRF+LKLY I+LGTL+ AD EW
Sbjct: 241 NVELTEVGPRFELKLYMIRLGTLEQEATADVEW 273
>sp|Q0VD01|IMP4_BOVIN U3 small nucleolar ribonucleoprotein protein IMP4 OS=Bos taurus
GN=IMP4 PE=2 SV=1
Length = 291
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 166/273 (60%), Positives = 215/273 (78%), Gaps = 12/273 (4%)
Query: 12 YLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAVSIG 71
YLYRK+ EE +R QE+KD++R++L+ N+ IPT+L+ +AL+LQ L+++D G E
Sbjct: 12 YLYRKAREEAERTAQERKDKVRRALEENRLIPTELRREALALQGSLEFDDAGGE------ 65
Query: 72 TETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYE 131
G H DDEYRWAG+EDPK+MITTSRDPSSRLKMF KEL+L+FP +QRMNRG +E
Sbjct: 66 -----GVTNHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120
Query: 132 MKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMS 191
+ L+ AC+AN VTD +VVHEHRG P L++ HLP+GPTAYFT+ +V+MRHDIPDLGT S
Sbjct: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTAS 180
Query: 192 EQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKR-DGK 250
E PHL+ H F ++LG+RV IL+YLFPVPK+DS+R++TFAN DDYISFRHH YK+ + +
Sbjct: 181 EAKPHLIMHGFSSRLGKRVSDILRYLFPVPKDDSRRVITFANQDDYISFRHHVYKKTNHR 240
Query: 251 DIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
++EL EVGPRF+LKLY I+LGTL+ AD EW
Sbjct: 241 NVELTEVGPRFELKLYMIRLGTLEQEATADVEW 273
>sp|O62518|YHPK_CAEEL Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans
GN=ZK795.3 PE=4 SV=1
Length = 292
Score = 358 bits (920), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 164/287 (57%), Positives = 221/287 (77%), Gaps = 19/287 (6%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
M+RR+ RLRRE+++RKSLEEKQ++++EK++++R +L+ N KI +L+ A+ L + DW
Sbjct: 1 MIRRENRLRREFIFRKSLEEKQKSLEEKREKIRNALENNTKIDYNLRKDAIELAKGSDW- 59
Query: 61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
GG D EYRWAG +DPKI+ITTSRDPSSRLKMF KE++LIFP
Sbjct: 60 ---------------GGQQYETDSEYRWAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFP 104
Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
N+QR+NRG+Y++KQ++ A +A D TD I+ E RG PD +++CHLP+GPTA+F+M++V+M
Sbjct: 105 NAQRINRGHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVM 164
Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
RHDIP+ GTMSEQYPHL+F N ++LG R +ILK+LFPVPK DSKRI+TF+N +DYISF
Sbjct: 165 RHDIPNCGTMSEQYPHLIFDNLNSKLGHRFTTILKHLFPVPKPDSKRIITFSNSEDYISF 224
Query: 241 RHHNYK--RDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285
RHH YK DG ++EL E GPRF+LK Y+IKLGTL+T+ AA+ EW L
Sbjct: 225 RHHVYKTENDG-EVELTEAGPRFELKPYQIKLGTLETLAAAEDEWVL 270
>sp|O13823|IMP4_SCHPO U3 small nucleolar ribonucleoprotein protein imp4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=imp4 PE=3 SV=1
Length = 289
Score = 297 bits (760), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 148/287 (51%), Positives = 203/287 (70%), Gaps = 13/287 (4%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
MLRR R RR+++Y+++ E ++ + EK+ LRK+L+GNK++ DL+ + LQ+ ++
Sbjct: 1 MLRRAVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQEDS-QLQKDYKYD 59
Query: 61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
+ A TET+ DDEY G +PK+++TTSR+PSSRL F KE+RL+ P
Sbjct: 60 ESR---ATQEETETN------LDDEYHRLGEREPKVLVTTSREPSSRLAQFAKEVRLLIP 110
Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
NS R+NRGN + L+ A RAND+TD +++HEHRGIPD LVI HLPYGPT F++ +V++
Sbjct: 111 NSYRLNRGNIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVL 170
Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYIS 239
RHDIP+ GTMSE YPHL+F N ++LG+RV + L LFP PK+ + R+VTFAN DDYIS
Sbjct: 171 RHDIPNTGTMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYIS 230
Query: 240 FRHHNYKRDG-KDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285
FRHH Y + G K I L E GPRF++KL+EI LGT+D V+ AD EW L
Sbjct: 231 FRHHIYAKTGPKQIILSEAGPRFEMKLFEITLGTVDMVD-ADVEWKL 276
>sp|P53941|IMP4_YEAST U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IMP4 PE=1
SV=1
Length = 290
Score = 284 bits (726), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 139/296 (46%), Positives = 199/296 (67%), Gaps = 10/296 (3%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
MLRRQAR RREYLYRK+ E + +Q+K+ ++++L K +P +L SLQ+ ++
Sbjct: 1 MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDE-SLQKDFRYD 59
Query: 61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
S+ L D+ +GI DP+I++TTSRDPS+RL F KE++L+FP
Sbjct: 60 Q-------SLKESEEADDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFP 112
Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
N+ R+NRGNY M L+ AC+ + TD +V+HEHRG+P +L I H P+GPTA F++ +V+M
Sbjct: 113 NAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVM 172
Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYIS 239
RHDI + G SE PHL+F NF T LG+RV+ ILK+LF PK+DS+R++TFAN D+IS
Sbjct: 173 RHDIINAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFIS 232
Query: 240 FRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRILNSR 295
R H Y R + +E+ EVGPRF+++L+E++LGTL+ + AD EW L R R N +
Sbjct: 233 VRQHVYVRTREGVEIAEVGPRFEMRLFELRLGTLENKD-ADVEWQLRRFIRTANKK 287
>sp|Q755T8|IMP4_ASHGO U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=IMP4 PE=3 SV=2
Length = 283
Score = 280 bits (716), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 145/297 (48%), Positives = 201/297 (67%), Gaps = 19/297 (6%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
MLRRQAR RREYLYRK+ E ++ +Q+K+D ++++L K +P ++ + LQR ++
Sbjct: 1 MLRRQARERREYLYRKAQELQESQLQQKRDLIKQALAQGKPLPKEVADDT-KLQRDYQYD 59
Query: 61 DEGPELAVSIGTETSGGGLTHQDDEYR-WAGIEDPKIMITTSRDPSSRLKMFVKELRLIF 119
+ E SI DDEY +GI DPK+++TTSRDPS+RL F KE++L+F
Sbjct: 60 ESAQE---SI------------DDEYSALSGIVDPKVIVTTSRDPSTRLSQFAKEVKLLF 104
Query: 120 PNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVI 179
P S R+NRGNY MK L+ AC+ + TD +V+HEHRG+P L I H P+GPTA F++ +V+
Sbjct: 105 PTSVRLNRGNYIMKNLVDACQKSGTTDLVVLHEHRGVPTALTISHFPHGPTASFSLHNVV 164
Query: 180 MRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVP-KEDSKRIVTFANHDDYI 238
+RHDI + G SE +PHL+F NF T LGQRV+ ILK++FP K+DS R++TFAN D+I
Sbjct: 165 LRHDILNAGNQSEVHPHLIFDNFTTPLGQRVVKILKHMFPPGVKKDSPRVITFANRGDFI 224
Query: 239 SFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRILNSR 295
S R H Y + +EL EVGPRF++KLYE+ LGTL+ + AD EW L R R N +
Sbjct: 225 SVRQHVYVKTRDGVELAEVGPRFEMKLYELTLGTLENKD-ADVEWQLRRFVRTANRK 280
>sp|Q6C804|IMP4_YARLI U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=IMP4 PE=3 SV=1
Length = 283
Score = 278 bits (710), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 135/297 (45%), Positives = 201/297 (67%), Gaps = 19/297 (6%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
M+RRQAR RREYLYRKSL+ ++ +K+ +L+ +L K +P D+ + L++ + ++
Sbjct: 1 MIRRQARERREYLYRKSLQLQEATKIQKRQQLKAALASGKPLPKDVADDE-ELRKTIAYD 59
Query: 61 DEGPELAVSIGTETSGGGLTHQDDEYR-WAGIEDPKIMITTSRDPSSRLKMFVKELRLIF 119
+ S+ E DDEY +GI DPK+++TTSRDPS+RL F KE++L+F
Sbjct: 60 E-------SVQDEI--------DDEYSAMSGITDPKVVVTTSRDPSTRLSQFAKEVKLLF 104
Query: 120 PNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVI 179
P S R+NRG + L+ AC+ + +D IV+HEHRG+P + + H P+GPTAYF++ +V+
Sbjct: 105 PTSIRLNRGGTVLPSLVSACKTSASSDLIVLHEHRGVPTAMTVSHFPHGPTAYFSLHNVV 164
Query: 180 MRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVP-KEDSKRIVTFANHDDYI 238
+RHD+PD G MSE +PHL+F NF T LG+RV+ ILK+LFP K+DS R++TFAN D+I
Sbjct: 165 LRHDLPDTGNMSEVHPHLIFDNFTTDLGKRVVQILKHLFPPGVKKDSARVITFANRGDFI 224
Query: 239 SFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRILNSR 295
S R H Y + + +EL EVGPRF+++LY+++LGTL+ + AD EW + R N +
Sbjct: 225 SVRQHVYVKTREGVELAEVGPRFEMRLYDLRLGTLENKD-ADVEWRMHGFMRTANKK 280
>sp|Q6FNN7|IMP4_CANGA U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=IMP4 PE=3 SV=1
Length = 288
Score = 276 bits (706), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 140/297 (47%), Positives = 200/297 (67%), Gaps = 14/297 (4%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
MLRRQAR RREYLYRK+ E ++ +Q+K+ ++++L K +P +L LQ+ ++
Sbjct: 1 MLRRQARERREYLYRKAQELQETQLQQKRQIIKQALAQGKPLPKELAEDE-QLQKDFRYD 59
Query: 61 DEGPELAVSIGTETSGGGLTHQDDEYRWA-GIEDPKIMITTSRDPSSRLKMFVKELRLIF 119
S+ G+ DDEY + GI + ++++TTSRDPSSRL F KE++L+F
Sbjct: 60 Q-------SMADNEDEAGV---DDEYSASSGIVEARVIVTTSRDPSSRLAQFAKEIKLLF 109
Query: 120 PNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVI 179
PN+ R+NRGNY M L+ AC+ + TD IV+HEHRG+P +L + H PYGPTA+F++ +V+
Sbjct: 110 PNAVRLNRGNYVMADLVSACKKSGTTDLIVLHEHRGVPTSLTVSHFPYGPTAFFSLHNVV 169
Query: 180 MRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYI 238
+RHDI + G SE PHL+F NF T LG RV++ILK LFP PK+DS R++TFAN D+I
Sbjct: 170 LRHDILNRGNQSEVNPHLIFDNFTTPLGNRVVTILKNLFPPGPKKDSSRVITFANRGDFI 229
Query: 239 SFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRILNSR 295
S R H Y R +E+ EVGPRF+++L+E++LGTL+ + AD EW L R R N +
Sbjct: 230 SVRQHVYVRTKDGVEMAEVGPRFEMRLFELRLGTLENKD-ADVEWQLRRFVRTANRK 285
>sp|Q6BYD9|IMP4_DEBHA U3 small nucleolar ribonucleoprotein protein IMP4 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=IMP4 PE=3 SV=2
Length = 284
Score = 275 bits (702), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 136/297 (45%), Positives = 200/297 (67%), Gaps = 19/297 (6%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
M+R+QAR RREYLYRKSLE ++ ++ EK+ +L+ +L K + +L LQ+ +
Sbjct: 1 MIRKQARERREYLYRKSLELQESSLTEKRQQLKAALASGKPLSKELAEDK-ELQKDFIY- 58
Query: 61 DEGPELAVSIGTETSGGGLTHQDDEYR-WAGIEDPKIMITTSRDPSSRLKMFVKELRLIF 119
DE + T DDEY +GI +PK++ITTSR+PS +L F KE++L+F
Sbjct: 59 DESEQ--------------TEIDDEYSALSGISEPKVLITTSRNPSVKLLQFSKEIKLMF 104
Query: 120 PNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVI 179
PNS ++NRGNY + L+ C+ ++D I++HEHRGIP +L I H P+GP+ FT+ +V
Sbjct: 105 PNSIKLNRGNYVITDLVATCQRVQISDLIILHEHRGIPTSLTISHFPHGPSIIFTLHNVK 164
Query: 180 MRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVP-KEDSKRIVTFANHDDYI 238
+RHD+P++G SE YPHLVF NF ++LG+RV+ I+K+LFP K+DS R++TF N+DD+I
Sbjct: 165 LRHDLPEIGNSSESYPHLVFENFTSELGKRVVKIMKHLFPPGVKKDSSRVITFINNDDFI 224
Query: 239 SFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRILNSR 295
S RHH Y + +EL EVGPRF+++LYE++LG LD + ++ EW L R R N +
Sbjct: 225 SVRHHMYVKTKDTVELSEVGPRFEMRLYELRLGLLDN-KDSEVEWQLRRFIRTGNRK 280
>sp|P54073|YUY1_CAEEL Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans
GN=F44G4.1 PE=4 SV=4
Length = 384
Score = 151 bits (382), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 111/197 (56%), Gaps = 4/197 (2%)
Query: 94 PKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEH 153
PK+MIT + F EL+ PNS+ R N +K +I + + TD +VVHE
Sbjct: 177 PKVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHED 236
Query: 154 RGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSI 213
R P+ ++ CHLP GPTAYF ++ + D+ G + +P ++ +NF T+LG + +
Sbjct: 237 RKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKKFGESTSHFPEVILNNFNTRLGHNIARM 296
Query: 214 LKYLFP-VPKEDSKRIVTFANHDDYISFRHHNY--KRDGKDIELKEVGPRFQLKLYEIKL 270
L LFP PK +R+VTF N DYI FRHH Y K++G L E+GPRF L+L ++
Sbjct: 297 LACLFPHDPKFTGRRVVTFHNQRDYIFFRHHRYEFKKEGSKAALLELGPRFTLRLKWLQK 356
Query: 271 GTLDTVEAADTEWALFR 287
GT D + + EW L R
Sbjct: 357 GTFD-AKWGEFEWVLKR 372
>sp|Q8AVP1|RPF1_XENLA Ribosome production factor 1 OS=Xenopus laevis GN=rpf1 PE=2 SV=1
Length = 343
Score = 145 bits (365), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 136/248 (54%), Gaps = 15/248 (6%)
Query: 40 KKIPTDLKNQALSLQRKLDWEDEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMIT 99
K +P ++NQ + + +D DE E+A+ T+ Q PKI+IT
Sbjct: 93 KPVPKTIENQRVYDETTVDPADE--EVALDEATDEFAPYFNKQTT---------PKILIT 141
Query: 100 TSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDT 159
TS P R F ++L I PNS R +K++I C + D TD +V++E R +P+
Sbjct: 142 TSDRPRGRSVRFTEQLSSIIPNSDVYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNG 201
Query: 160 LVICHLPYGPTAYFTMSDVIMRHDIPDLGTM-SEQYPHLVFHNFKTQLGQRVMSILKYLF 218
LV+CHLP GPTA+F +S+V +R ++ G +E P ++ +NF T+LG + + L+
Sbjct: 202 LVLCHLPDGPTAHFKISNVRLRKEMKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLY 261
Query: 219 PV-PKEDSKRIVTFANHDDYISFRHHNYK-RDGKDIELKEVGPRFQLKLYEIKLGTLDTV 276
P P +++ TF N DYI FR+H Y + K + ++E+GPRF LKL ++ GT D+
Sbjct: 262 PHDPHFVGRQVATFHNQRDYIFFRYHRYLFKSEKKVGIQELGPRFTLKLRSLQKGTFDS- 320
Query: 277 EAADTEWA 284
+ + EW
Sbjct: 321 KYGEYEWV 328
>sp|Q9H9Y2|RPF1_HUMAN Ribosome production factor 1 OS=Homo sapiens GN=RPF1 PE=1 SV=2
Length = 349
Score = 144 bits (363), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 130/248 (52%), Gaps = 15/248 (6%)
Query: 40 KKIPTDLKNQALSLQRKLDWEDEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMIT 99
K +P + NQ + + +D DE E+A T+ Q PKI+IT
Sbjct: 99 KPVPKTIDNQRVYDETTVDPNDE--EVAYDEATDEFASYFNKQ---------TSPKILIT 147
Query: 100 TSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDT 159
TS P R ++L + PNS R +K++I C A D TD IV++E R P+
Sbjct: 148 TSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNG 207
Query: 160 LVICHLPYGPTAYFTMSDVIMRHDIPDLGT-MSEQYPHLVFHNFKTQLGQRVMSILKYLF 218
L++ HLP GPTA+F MS V +R +I G +E P ++ +NF T+LG + + LF
Sbjct: 208 LILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLF 267
Query: 219 P-VPKEDSKRIVTFANHDDYISFRHHNYK-RDGKDIELKEVGPRFQLKLYEIKLGTLDTV 276
P P+ +++ TF N DYI FR H Y R K + ++E+GPRF LKL ++ GT D+
Sbjct: 268 PHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPRFTLKLRSLQKGTFDS- 326
Query: 277 EAADTEWA 284
+ + EW
Sbjct: 327 KYGEYEWV 334
>sp|Q5R631|RPF1_PONAB Ribosome production factor 1 OS=Pongo abelii GN=RPF1 PE=2 SV=1
Length = 349
Score = 144 bits (363), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 130/248 (52%), Gaps = 15/248 (6%)
Query: 40 KKIPTDLKNQALSLQRKLDWEDEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMIT 99
K +P + NQ + + +D DE E+A T+ Q PKI+IT
Sbjct: 99 KPVPKTIDNQRVYDETTVDPNDE--EVAYDEATDEFASYFNKQ---------TSPKILIT 147
Query: 100 TSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDT 159
TS P R ++L + PNS R +K++I C A D TD IV++E R P+
Sbjct: 148 TSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNG 207
Query: 160 LVICHLPYGPTAYFTMSDVIMRHDIPDLGT-MSEQYPHLVFHNFKTQLGQRVMSILKYLF 218
L++ HLP GPTA+F MS V +R +I G +E P ++ +NF T+LG + + LF
Sbjct: 208 LILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLF 267
Query: 219 P-VPKEDSKRIVTFANHDDYISFRHHNYK-RDGKDIELKEVGPRFQLKLYEIKLGTLDTV 276
P P+ +++ TF N DYI FR H Y R K + ++E+GPRF LKL ++ GT D+
Sbjct: 268 PHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPRFTLKLRSLQKGTFDS- 326
Query: 277 EAADTEWA 284
+ + EW
Sbjct: 327 KYGEYEWV 334
>sp|Q5RJS9|RPF1_RAT Ribosome production factor 1 OS=Rattus norvegicus GN=Rpf1 PE=2 SV=2
Length = 345
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 130/247 (52%), Gaps = 15/247 (6%)
Query: 40 KKIPTDLKNQALSLQRKLDWEDEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMIT 99
K +P + NQ + + +D DE E+A T+ Q PKI+IT
Sbjct: 99 KPVPKTIDNQRVYDETTVDPNDE--EVAYDEATDEFASYFNRQTS---------PKILIT 147
Query: 100 TSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDT 159
TS P R ++L + P+S R +K++I C A D TD IV++E R P+
Sbjct: 148 TSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNG 207
Query: 160 LVICHLPYGPTAYFTMSDVIMRHDIPDLGT-MSEQYPHLVFHNFKTQLGQRVMSILKYLF 218
L++ HLP GPTA+F MS V +R +I G +E P ++ +NF T+LG + + LF
Sbjct: 208 LILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLF 267
Query: 219 P-VPKEDSKRIVTFANHDDYISFRHHNYK-RDGKDIELKEVGPRFQLKLYEIKLGTLDTV 276
P P+ +++ TF N DYI FR H Y + K + ++E+GPRF LKL ++ GT D+
Sbjct: 268 PHNPQFIGRQVATFHNQRDYIFFRFHRYIFKSEKKVGIQELGPRFTLKLRSLQKGTFDS- 326
Query: 277 EAADTEW 283
+ + EW
Sbjct: 327 KYGEYEW 333
>sp|Q7TND5|RPF1_MOUSE Ribosome production factor 1 OS=Mus musculus GN=Rpf1 PE=2 SV=2
Length = 349
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 130/248 (52%), Gaps = 15/248 (6%)
Query: 40 KKIPTDLKNQALSLQRKLDWEDEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMIT 99
K +P + NQ + + +D DE E+A T+ Q PKI+IT
Sbjct: 99 KPVPKTIDNQRVYDETTVDPNDE--EVAYDEATDEFASYFNRQTS---------PKILIT 147
Query: 100 TSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDT 159
TS P R ++L + P+S R +K++I C A D TD IV++E R P+
Sbjct: 148 TSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNG 207
Query: 160 LVICHLPYGPTAYFTMSDVIMRHDIPDLGT-MSEQYPHLVFHNFKTQLGQRVMSILKYLF 218
L++ HLP GPTA+F MS V +R +I G +E P ++ +NF T+LG + + LF
Sbjct: 208 LILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLF 267
Query: 219 P-VPKEDSKRIVTFANHDDYISFRHHNYK-RDGKDIELKEVGPRFQLKLYEIKLGTLDTV 276
P P+ +++ TF N DYI FR H Y + K + ++E+GPRF LKL ++ GT D+
Sbjct: 268 PHNPQFIGRQVATFHNQRDYIFFRFHRYIFKSEKKVGIQELGPRFTLKLRSLQKGTFDS- 326
Query: 277 EAADTEWA 284
+ + EW
Sbjct: 327 KYGEYEWV 334
>sp|Q9VKB4|RPF1_DROME Probable ribosome production factor 1 OS=Drosophila melanogaster
GN=CG6712 PE=2 SV=1
Length = 394
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 123/207 (59%), Gaps = 5/207 (2%)
Query: 93 DPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHE 152
+PK++IT + +P ++ + F EL IFPN+ R +K++ + + TD ++V+E
Sbjct: 184 EPKVLITFADNPVTKTRKFGLELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNE 243
Query: 153 HRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIP-DLGTMSEQYPHLVFHNFKTQLGQRVM 211
R P+ L++ HLP GPTA+F +S+V + DI D +++ P ++ +NF T+LG V
Sbjct: 244 DRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLGLTVG 303
Query: 212 SILKYLFPV-PKEDSKRIVTFANHDDYISFRHHNYK--RDGKDIELKEVGPRFQLKLYEI 268
+L LF P+ +R VTF N DYI FRHH Y+ ++GK ++L+E+GPRF LKL +
Sbjct: 304 RMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRYEFTKEGKRVKLRELGPRFTLKLRSL 363
Query: 269 KLGTLDTVEAADTEWALFRMGRILNSR 295
+ GT D+ + D W + + SR
Sbjct: 364 QEGTFDS-KTGDYAWIISNKRHAMESR 389
>sp|Q6IQU6|RPF1_DANRE Ribosome production factor 1 OS=Danio rerio GN=rpf1 PE=2 SV=1
Length = 330
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 139/250 (55%), Gaps = 19/250 (7%)
Query: 40 KKIPTDLKNQALSLQRKLDWEDEGPELAVSIGTETSGGGLTHQDDEYR--WAGIEDPKIM 97
K++P ++NQ + + ++ EDE E+A GT DE+ + + +PK++
Sbjct: 80 KEVPKTIENQRIYDETTVNPEDE--EVAFDEGT-----------DEFSAYFNRLTNPKVL 126
Query: 98 ITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIP 157
ITTS P R F +L + P++ R +K++I C + T +V++E R +P
Sbjct: 127 ITTSDRPRGRTVRFCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVP 186
Query: 158 DTLVICHLPYGPTAYFTMSDVIMRHDIPDLG-TMSEQYPHLVFHNFKTQLGQRVMSILKY 216
+ +V+CHLP GPTA+F +S V +R ++ G +E P ++ +NF T+LG + +
Sbjct: 187 NGMVLCHLPDGPTAHFKVSSVRLRKEMKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAA 246
Query: 217 LFPV-PKEDSKRIVTFANHDDYISFRHHNYK-RDGKDIELKEVGPRFQLKLYEIKLGTLD 274
LFP P+ +++ TF N D+I FR H Y ++ K + ++E+GPRF LKL ++ GT D
Sbjct: 247 LFPHDPQFVGRQVATFHNQRDFIFFRFHRYIFKNEKKVGIQELGPRFTLKLRSLQKGTFD 306
Query: 275 TVEAADTEWA 284
+ + + EW
Sbjct: 307 S-KFGEYEWV 315
>sp|O14180|YDS4_SCHPO Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC4F8.04 PE=4 SV=1
Length = 306
Score = 114 bits (285), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 109/209 (52%), Gaps = 12/209 (5%)
Query: 82 QDDEYRWAGIED---PKIMITTSRDPSSRLKMFVKELRLIFPNSQ-RMNRGNYEMKQLIH 137
+DDE+ E+ PK+++TTS+ S + F EL FPN++ R G+ E+ ++
Sbjct: 79 KDDEFSAYFSEERKVPKLLVTTSKRASRKCYDFASELLDCFPNAEFRKRTGDIEVHEIAE 138
Query: 138 ACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMSEQYPHL 197
A TD +V++E R + L + HLP GP+ YFT+S++ +I + G + P L
Sbjct: 139 AAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPSFYFTLSNLQTAKEISNHGRSTGHIPEL 198
Query: 198 VFHNFKTQLGQRVMSILKYLF-PVPKEDSKRIVTFANHDDYISFRHHNYK-------RDG 249
+ +NF T+LG V + LF P+ +++VT D++ FR H Y DG
Sbjct: 199 IINNFSTRLGMTVARAFQSLFIQTPQIQGRQVVTIHCQRDFLFFRRHRYAFREKSNMPDG 258
Query: 250 KDIELKEVGPRFQLKLYEIKLGTLDTVEA 278
L+E+GPRF ++L ++ G D E
Sbjct: 259 IGTGLQELGPRFTMRLRMVQKGVWDRKEG 287
>sp|P38805|RPF1_YEAST Ribosome production factor 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPF1 PE=1 SV=1
Length = 295
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 15/221 (6%)
Query: 69 SIGTETSGGGLTHQDDEYRWAGI---EDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRM 125
+I E G +DD R+ E PKI +TT+ + F L I PN +
Sbjct: 69 TINKEVEGD----EDDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVTFV 124
Query: 126 NRG-NYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDI 184
R Y++K++ C + TD ++++E + L HLP GPT YF +S + I
Sbjct: 125 KRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKI 184
Query: 185 PDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYISFRHH 243
G + P L+ +NF+T+LGQ V + + + P P + ++++T N DYI FR H
Sbjct: 185 VGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFRRH 244
Query: 244 NYK-RDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
Y +D + + L+E+GP+F LKL ++ G +TEW
Sbjct: 245 RYVFKDNERVGLQELGPQFTLKLKRLQRGI-----KEETEW 280
>sp|Q9YC08|BRIX_AERPE Probable brix domain-containing ribosomal biogenesis protein
OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 /
JCM 9820 / NBRC 100138 / K1) GN=APE_1443.1 PE=1 SV=2
Length = 180
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 98 ITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIP 157
+TTSR PS R++ FVK+L P + R RG+Y M++L +VV E RG P
Sbjct: 1 MTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERRGNP 60
Query: 158 DTL 160
+
Sbjct: 61 GII 63
>sp|Q3SZZ0|BRX1_BOVIN Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1
PE=2 SV=1
Length = 353
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 21/201 (10%)
Query: 87 RWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLI--HACRANDV 144
+W E +I+I +SR + R + +++LR++ P+S+ + + + K + C +
Sbjct: 55 KWKNKE--RILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNC 112
Query: 145 TDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDL----GTMSEQYPHLVFH 200
I + + + + P+GP+A F + ++ H + +L + P L F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNI---HTLAELKMTGNCLKGSRPLLSFD 169
Query: 201 NFKTQLGQRVM--SILKYLFPVPKEDSKR------IVTFANHDDYISFRHHNYKRDGKDI 252
+L + +L +F P+ K + TF D+ I FR N++ +D
Sbjct: 170 PAFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFR--NFQIIEEDA 227
Query: 253 ELKEVGPRFQLKLYEIKLGTL 273
L E+GPRF L L +I G+
Sbjct: 228 ALVEIGPRFVLNLIKIFQGSF 248
>sp|Q8TDN6|BRX1_HUMAN Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1
PE=1 SV=2
Length = 353
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 93/202 (46%), Gaps = 23/202 (11%)
Query: 87 RWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQ---RMNRGNYEMKQLIHACRAND 143
+W E +I+I +SR + R + +++LR++ P+S+ +M+R + ++ + C +
Sbjct: 55 KWKNKE--RILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKN 111
Query: 144 VTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDL----GTMSEQYPHLVF 199
I + + + + P+GP+A F + ++ H + +L + P L F
Sbjct: 112 CNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNI---HTLAELKMTGNCLKGSRPLLSF 168
Query: 200 HNFKTQLGQRVM--SILKYLFPVPKEDSK------RIVTFANHDDYISFRHHNYKRDGKD 251
+L + +L +F P+ K + TF D+ I FR N++ +D
Sbjct: 169 DPAFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFR--NFQIIEED 226
Query: 252 IELKEVGPRFQLKLYEIKLGTL 273
L E+GPRF L L +I G+
Sbjct: 227 AALVEIGPRFVLNLIKIFQGSF 248
>sp|Q9DCA5|BRX1_MOUSE Ribosome biogenesis protein BRX1 homolog OS=Mus musculus GN=Brix1
PE=2 SV=3
Length = 353
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 21/201 (10%)
Query: 87 RWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLI--HACRANDV 144
+W E +I+I +SR + R + +++LR++ P+S+ + + + K + C +
Sbjct: 55 KWKNKE--RILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNC 112
Query: 145 TDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDL----GTMSEQYPHLVFH 200
I + + + + P+GP+A F + ++ H + +L + P L F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNI---HTLAELKMTGNCLKGSRPLLSFD 169
Query: 201 NFKTQLGQRVM--SILKYLFPVPKEDSK------RIVTFANHDDYISFRHHNYKRDGKDI 252
L + L +F P+ K + TF D+ I FR N++ +D
Sbjct: 170 PAFDDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFR--NFQIIEEDA 227
Query: 253 ELKEVGPRFQLKLYEIKLGTL 273
L E+GPRF L L +I G+
Sbjct: 228 ALVEIGPRFVLNLIKIFQGSF 248
>sp|Q4QQT6|BRX1_RAT Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus
GN=Brix1 PE=2 SV=1
Length = 352
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 21/201 (10%)
Query: 87 RWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLI--HACRANDV 144
+W E +I+I +SR + R + +++LR++ P+S+ + + + K + C +
Sbjct: 54 KWKNKE--RILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNC 111
Query: 145 TDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDL----GTMSEQYPHLVFH 200
I + + + + P+GP+A F + ++ H + +L + P L F
Sbjct: 112 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNI---HTLAELKMTGNCLKGSRPLLSFD 168
Query: 201 NFKTQLGQRVM--SILKYLFPVPKEDSK------RIVTFANHDDYISFRHHNYKRDGKDI 252
L + L +F P+ K + TF D+ I FR N++ +D
Sbjct: 169 PAFDDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFR--NFQIIEEDA 226
Query: 253 ELKEVGPRFQLKLYEIKLGTL 273
L E+GPRF L L +I G+
Sbjct: 227 ALVEIGPRFVLNLIKIFQGSF 247
>sp|Q8UVY2|BRX1_XENLA Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis GN=brix1
PE=2 SV=1
Length = 339
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 90/204 (44%), Gaps = 21/204 (10%)
Query: 84 DEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLI--HACRA 141
E +W E +++I +SR + R + +++LR + P+S+ + + + K + C
Sbjct: 45 SEGKWKNKE--RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEM 102
Query: 142 NDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDL----GTMSEQYPHL 197
+ I + + + + P GP+A F + ++ H + +L + P L
Sbjct: 103 KNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNI---HTLAELKMSGNCLKGSRPIL 159
Query: 198 VFHNFKTQLGQRVM--SILKYLFPVPKEDSKR------IVTFANHDDYISFRHHNYKRDG 249
F + Q + +L +F P+ + I TF+ D+ I FR NY+
Sbjct: 160 SFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFR--NYQIIE 217
Query: 250 KDIELKEVGPRFQLKLYEIKLGTL 273
+D L E+GPRF L L +I G+
Sbjct: 218 EDAALVEIGPRFVLNLIKIFKGSF 241
>sp|Q5RAN2|BRX1_PONAB Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1
PE=2 SV=1
Length = 353
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 89/201 (44%), Gaps = 21/201 (10%)
Query: 87 RWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLI--HACRANDV 144
+W E +I+I +SR + R + +++LR++ P+S+ + + + K + C +
Sbjct: 55 KWKNKE--RILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNC 112
Query: 145 TDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDL----GTMSEQYPHLVFH 200
I + + + + P+GP+A F + ++ H + +L + P L F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNI---HTLAELKMTGNCLKGSRPLLSFD 169
Query: 201 NFKTQLGQRVM--SILKYLFPVPKEDSK------RIVTFANHDDYISFRHHNYKRDGKDI 252
+L + +L + P+ K + TF D+ I FR N++ +D
Sbjct: 170 PAFDELPHYALLKELLIQILSTPRYHPKSQPFVDHVFTFTILDNRIWFR--NFQIIEEDA 227
Query: 253 ELKEVGPRFQLKLYEIKLGTL 273
L E+GPRF L L +I G+
Sbjct: 228 ALVEIGPRFVLNLIKIFQGSF 248
>sp|Q975H1|BRIX_SULTO Probable brix domain-containing ribosomal biogenesis protein
OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 /
NBRC 100140 / 7) GN=STK_04410 PE=3 SV=2
Length = 176
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 95 KIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHR 154
+I+ T+SRD R++ F+ EL +FPNS ++NRG +K +I + +++ +
Sbjct: 7 EIVFTSSRDAPLRVRTFLNELTYVFPNSIKINRGRQSLKDIIAKSIYLNSKYLVIIDVIK 66
Query: 155 GIP 157
G P
Sbjct: 67 GNP 69
>sp|Q9HGL6|BRX1_SCHPO Ribosome biogenesis protein brx1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brx1 PE=3 SV=1
Length = 295
Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 23/198 (11%)
Query: 95 KIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGN-----YEMKQLIHACRANDVTDFIV 149
K+++ +SR + R + + +L + P+S++ ++ + Y++ +L N++ F
Sbjct: 44 KVLVLSSRGVTYRQRHLLNDLVSMMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFFF-- 101
Query: 150 VHEHRGIPDT-LVICHLPYGPTAYFTMSDVIMRHDIPDLG-TMSEQYPHLVF-HNFKTQL 206
E R D L I P GPT F + ++ ++ G + P L F F T
Sbjct: 102 --ESRRREDLYLHIARAPNGPTVKFHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAP 159
Query: 207 GQRVM-SILKYLFPVPKEDSK------RIVTFANHDDYISFRHHNYKRD---GKD-IELK 255
+V+ +L+ F +PK + R+ T D I FR++ + + KD + L
Sbjct: 160 HLKVVKELLQQTFGIPKGARRSKPFIDRVCTLTIADGKIWFRNYEIRENEDKSKDPVTLI 219
Query: 256 EVGPRFQLKLYEIKLGTL 273
E+GPRF + + I G+
Sbjct: 220 EIGPRFVMTIINILEGSF 237
>sp|Q6M0M3|BRIX_METMP Probable brix domain-containing ribosomal biogenesis protein
OS=Methanococcus maripaludis (strain S2 / LL) GN=MMP0247
PE=3 SV=1
Length = 164
Score = 39.3 bits (90), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 96 IMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRG 155
++ITTSR PS R + V +L +F N + +NRG + +LI + D I+V E +G
Sbjct: 1 MIITTSRKPSQRTRSLVNDLARVF-NFKILNRGKIPLSELIE-----NKDDMIIVEELKG 54
Query: 156 IPDTLVICHL 165
P L I +
Sbjct: 55 NPGRLKIFNF 64
>sp|Q9V200|BRIX_PYRAB Probable brix domain-containing ribosomal biogenesis protein
OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB02740
PE=3 SV=1
Length = 224
Score = 38.9 bits (89), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 17/128 (13%)
Query: 96 IMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRG 155
++ITTS P+ R + F +L +FPNS M RG +++L+ ++++ +G
Sbjct: 2 MLITTSHRPTRRTRSFGHDLERVFPNSLYMTRGKKTIQELLMEAYDRGYERLLIINVWKG 61
Query: 156 IPDTLVICHL---PYGPTAYFTMSDVIM------------RHDIPDLGTMSEQYP--HLV 198
P + + +G Y + V + R D+P + T +++ HL
Sbjct: 62 NPLKMTFIKVHPDDWGYLGYLYLHGVKLQREMGFRGLNPIREDMPLVVTTAKRVGLDHLA 121
Query: 199 FHNFKTQL 206
F ++L
Sbjct: 122 FAQVFSEL 129
>sp|Q8PTT5|BRIX_METMA Probable brix domain-containing ribosomal biogenesis protein
OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647
/ Goe1 / Go1 / JCM 11833 / OCM 88) GN=MM_2627 PE=3 SV=1
Length = 157
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 96 IMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRG 155
+++TTSR PS++ + K L F S+ ++RG M++L+ N FIVV E+ G
Sbjct: 1 MLVTTSRKPSAKSRTLCKLLSR-FTASRCISRGKMGMQELLDFTEGN---TFIVVGEYHG 56
Query: 156 IPDTL 160
P L
Sbjct: 57 NPGEL 61
>sp|Q5JDM5|BRIX_PYRKO Probable brix domain-containing ribosomal biogenesis protein
OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM
12380 / KOD1) GN=TK0617 PE=3 SV=1
Length = 208
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 96 IMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRG 155
++ITTS P+ R + F +L +FPNS + RG ++ L+ ++++ +G
Sbjct: 2 MLITTSHRPTRRTRSFGHDLEKVFPNSLYLTRGKKTIQDLLMEAYDRGYERLLIINVWKG 61
Query: 156 IPDTLVICHL---PYGPTAYFTMSDVIMRHDIP--DLGTMSEQYPHLV 198
P + + +G Y + + ++ +I ++ + E+ P +V
Sbjct: 62 NPLKMTFIKVDPEDWGYIGYLYLHGIKLQREIGFRNIPPIREEMPFVV 109
>sp|Q8ZVN2|BRIX_PYRAE Probable brix domain-containing ribosomal biogenesis protein
OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM
7523 / JCM 9630 / NBRC 100827) GN=PAE2201 PE=3 SV=1
Length = 181
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 95 KIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHR 154
K++ITTSR+PS + V +L P + ++ RG L+ A + E R
Sbjct: 6 KVIITTSREPSKKTLELVNDLVNSLPGTSKIVRGKKSFITLLEEAVACGARYIAFIWERR 65
Query: 155 GIPDTLV 161
G+P L+
Sbjct: 66 GMPFALL 72
>sp|Q9UXB9|BRIX_SULSO Probable brix domain-containing ribosomal biogenesis protein
OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617
/ JCM 11322 / P2) GN=SSO0731 PE=3 SV=1
Length = 170
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 91 IEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRG 128
I +I+IT+SRDPS R + F+ L + P+S ++ RG
Sbjct: 3 IHRTRIVITSSRDPSIRTRNFLNVLTFVLPDSVKITRG 40
>sp|Q8TZI2|BRIX_PYRFU Probable brix domain-containing ribosomal biogenesis protein
OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 /
JCM 8422 / Vc1) GN=PF2010 PE=3 SV=1
Length = 223
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 96 IMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRG 155
++ITTS P+ R + F +L +FPNS + RG +++L+ ++++ +G
Sbjct: 2 MLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQELLMEAYDRGYERLLILNVWKG 61
Query: 156 IP 157
P
Sbjct: 62 NP 63
>sp|P34524|BRX1_CAEEL Ribosome biogenesis protein BRX1 homolog OS=Caenorhabditis elegans
GN=K12H4.3 PE=3 SV=1
Length = 352
Score = 34.7 bits (78), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 92/205 (44%), Gaps = 28/205 (13%)
Query: 88 WAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDF 147
W E ++++ SR R + +K+++ + P++ +G+ ++ Q N++ +
Sbjct: 59 WTNRE--RVLVLCSRGADVRTRYLMKDIKDLLPHA----KGDSKLDQQKSLNVLNEIAEM 112
Query: 148 -----IVVHEHRGIPDT-LVICHLPYGPTAYFTMSDVIMRHDIPDLG-TMSEQYPHLVFH 200
++ E R DT L + ++ GP+ F + +V ++ G + P L F
Sbjct: 113 KNCTKVMYFESRKRKDTYLWMSNVEKGPSIKFLVHNVHTMKELKMSGNCLRASRPVLSFD 172
Query: 201 NF---KTQLGQRVMSILKYLFPVPKEDSKRIVTFANH--------DDYISFRHHNYKRDG 249
+ K QL + + ++L P R F +H D I FR N++
Sbjct: 173 DAFDKKPQL-KLIKAVLMQTLGTPHHHP-RSQPFVDHVFNFSVGEGDKIWFR--NFQIVD 228
Query: 250 KDIELKEVGPRFQLKLYEIKLGTLD 274
+ ++L+EVGPRF L++ + G+ +
Sbjct: 229 ESLQLQEVGPRFVLEMVRLFAGSFE 253
>sp|O74104|BRIX_PYRHO Probable brix domain-containing ribosomal biogenesis protein
OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428
/ JCM 9974 / NBRC 100139 / OT-3) GN=PH1900 PE=3 SV=1
Length = 224
Score = 34.7 bits (78), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 96 IMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRG 155
++ITTS P+ R + F +L + PNS + RG +++L+ ++++ +G
Sbjct: 2 MLITTSHRPTRRTRSFGHDLERVIPNSLYLTRGKKTIQELLMEAYDRGYERLLIINVWKG 61
Query: 156 IP 157
P
Sbjct: 62 NP 63
>sp|Q54DJ0|RPF2_DICDI Ribosome production factor 2 homolog OS=Dictyostelium discoideum
GN=bxdc1 PE=3 SV=1
Length = 307
Score = 32.0 bits (71), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 228 IVTFANHDDYISFRHHN--YKRDGKDI---ELKEVGPRFQLKLYEIKLGTLD 274
+V DD I FRH+ + G I +LKEVGP F + + KL + D
Sbjct: 188 VVIMTAVDDKILFRHYTTIFSPSGSKIPKVDLKEVGPSFDITIRRTKLASAD 239
>sp|B9JML7|ACDH_AGRRK Acetaldehyde dehydrogenase OS=Agrobacterium radiobacter (strain K84
/ ATCC BAA-868) GN=Arad_7256 PE=3 SV=1
Length = 313
Score = 31.2 bits (69), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 8 LRREYLYRKSLEEKQ----RAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEG 63
+ R+ +Y +L + Q R+I + DR+R + G ++ +++ + L R + E++G
Sbjct: 207 IMRDTVYCLALTQDQDAVRRSIHDMIDRVRGYVPG-YRLKQEVQFEPLRDARAVGGEEDG 265
Query: 64 PELAVSIGTETSGGG 78
P L VS+ E G G
Sbjct: 266 PALKVSVFLEVEGAG 280
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,092,850
Number of Sequences: 539616
Number of extensions: 4744514
Number of successful extensions: 14558
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 14452
Number of HSP's gapped (non-prelim): 69
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)