Query psy16424
Match_columns 295
No_of_seqs 234 out of 701
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 20:55:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2781|consensus 100.0 6E-100 1E-104 681.5 29.0 283 1-295 1-284 (290)
2 KOG2780|consensus 100.0 9.8E-66 2.1E-70 465.8 20.6 246 34-291 45-295 (302)
3 PF04427 Brix: Brix domain; I 100.0 1.1E-42 2.4E-47 305.5 9.8 170 98-268 1-191 (191)
4 smart00879 Brix Brix domain. T 100.0 1.2E-38 2.5E-43 276.0 19.7 167 97-263 1-180 (180)
5 KOG2971|consensus 100.0 1.8E-39 3.9E-44 292.7 14.3 193 93-290 49-252 (299)
6 COG2136 IMP4 Predicted exosome 100.0 1.1E-36 2.3E-41 269.5 19.1 181 94-274 2-190 (191)
7 KOG2963|consensus 100.0 1.3E-35 2.9E-40 277.6 16.2 189 92-285 24-312 (405)
8 COG5154 BRX1 RNA-binding prote 100.0 2.6E-35 5.6E-40 260.1 15.1 207 81-291 14-239 (283)
9 PRK03972 ribosomal biogenesis 100.0 3.4E-29 7.4E-34 223.3 20.9 173 96-272 2-194 (208)
10 PRK00933 ribosomal biogenesis 99.5 8.4E-13 1.8E-17 114.9 15.3 149 96-270 1-162 (165)
11 KOG3031|consensus 99.5 2E-13 4.3E-18 125.9 9.7 169 102-270 36-228 (307)
12 COG5106 RPF2 Uncharacterized c 98.1 4.5E-06 9.8E-11 76.3 6.5 168 103-270 37-235 (316)
13 PRK03972 ribosomal biogenesis 95.3 0.13 2.9E-06 46.6 9.5 76 96-176 107-188 (208)
14 cd00860 ThrRS_anticodon ThrRS 65.8 35 0.00076 25.2 7.0 75 95-170 3-78 (91)
15 PF05508 Ran-binding: RanGTP-b 62.2 5.2 0.00011 38.3 2.1 34 256-289 188-222 (302)
16 cd00861 ProRS_anticodon_short 60.9 38 0.00082 25.4 6.4 67 107-174 19-85 (94)
17 PF03129 HGTP_anticodon: Antic 50.8 61 0.0013 24.3 6.1 81 96-176 2-85 (94)
18 PF04921 XAP5: XAP5, circadian 50.6 16 0.00034 34.0 3.2 82 80-177 97-186 (239)
19 cd00858 GlyRS_anticodon GlyRS 49.7 1.1E+02 0.0023 24.6 7.7 75 93-170 26-104 (121)
20 cd00859 HisRS_anticodon HisRS 47.5 1E+02 0.0022 22.1 6.8 76 94-170 2-78 (91)
21 COG1783 XtmB Phage terminase l 41.7 1.1E+02 0.0024 30.7 7.5 89 82-177 14-112 (414)
22 COG0124 HisS Histidyl-tRNA syn 32.7 2.4E+02 0.0052 28.4 8.6 76 92-168 334-410 (429)
23 cd02974 AhpF_NTD_N Alkyl hydro 31.8 2.4E+02 0.0051 22.1 6.8 68 89-169 15-84 (94)
24 PF06258 Mito_fiss_Elm1: Mitoc 30.0 1.2E+02 0.0026 29.0 5.7 54 94-153 183-237 (311)
25 TIGR00985 3a0801s04tom mitocho 29.4 1E+02 0.0022 26.6 4.6 9 3-11 38-46 (148)
26 PF12745 HGTP_anticodon2: Anti 28.9 3.6E+02 0.0079 25.4 8.6 75 94-169 6-89 (273)
27 KOG3112|consensus 26.4 56 0.0012 30.1 2.6 41 132-174 102-142 (262)
28 PF06862 DUF1253: Protein of u 26.2 91 0.002 31.6 4.3 40 81-122 25-64 (442)
29 TIGR00442 hisS histidyl-tRNA s 24.9 2.5E+02 0.0054 27.2 7.1 72 94-166 323-395 (397)
30 KOG3397|consensus 24.0 1.1E+02 0.0025 27.4 4.0 77 109-188 22-99 (225)
31 CHL00201 syh histidine-tRNA sy 23.2 2.5E+02 0.0054 27.9 6.8 82 94-176 326-408 (430)
32 PLN02530 histidine-tRNA ligase 22.6 3.7E+02 0.008 27.2 8.0 81 94-175 402-483 (487)
33 PF10673 DUF2487: Protein of u 20.3 2.8E+02 0.0061 23.7 5.6 49 107-155 36-96 (142)
No 1
>KOG2781|consensus
Probab=100.00 E-value=6e-100 Score=681.51 Aligned_cols=283 Identities=66% Similarity=1.114 Sum_probs=275.7
Q ss_pred CchhhHhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhcCCCCCCcchhhhHHHHHhhccccCCCCccccccccCCCCCCCC
Q psy16424 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAVSIGTETSGGGLT 80 (295)
Q Consensus 1 m~r~~~r~rre~l~~k~~e~~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (295)
|+||++|+||||||+|++|+++++.+|+|++|++||++|++||++|++++..|.+.+.|+|..++ +...
T Consensus 1 MlRR~~R~RREylyrK~~E~~~k~~~ekk~~lr~ALe~nk~ip~elrkda~~l~d~~~~ed~~~~-----------~~~~ 69 (290)
T KOG2781|consen 1 MLRRQARERREYLYRKALEEQDKSLQEKKRRLREALEENKKIPKELRKDALLLKDEIYYEDEGGE-----------ADDS 69 (290)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHhHHHhhhhhhccccccc-----------cccc
Confidence 99999999999999999999999999999999999999999999999999999999999986654 5668
Q ss_pred CcccHHhhcCCCCCeEEEEeCCCCCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeE
Q psy16424 81 HQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTL 160 (295)
Q Consensus 81 ~~ddey~~~~~~~PKvLITtSr~pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L 160 (295)
++||||+|||..+|||||||||+||+++.+|+|+|+.+|||++++|||++.+.+++++|..+|+|++||||||+|.|++|
T Consensus 70 ~vddEy~~ag~~dPKimvTTSR~PSsrL~~FaKelkLvfPNaqr~nRG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL 149 (290)
T KOG2781|consen 70 HVDDEYRWAGEEDPKIMVTTSRDPSSRLKMFAKELKLVFPNAQRLNRGNYVVGELVDAARANGVTDLIIVHEHRGIPDGL 149 (290)
T ss_pred cccHHHHhccCCCCcEEEEeCCCchHHHHHHHHhheEeccChhhhcccceeHHHHHHHHHHCCCceEEEEeccCCCCCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCceEEEEEceeEeccccCCCCCCCCCCcEEEeeCCCCchhhHHHHHHHhcCCCCCCCCCeEEEEeecCCeEEE
Q psy16424 161 VICHLPYGPTAYFTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240 (295)
Q Consensus 161 ~I~~lP~GPT~~F~I~nv~l~~di~~~g~~~~~~P~LIfnnF~t~lg~~i~~il~~LFp~p~~~~rRVv~F~n~~d~I~F 240 (295)
.|||||+|||++|+|+||+++|||++.|++++++||||||||+|++|++++++|++|||+|+.+++|||||.|++|+|+|
T Consensus 150 ~vshlPfGPTa~Fsl~nvVmRhdip~~G~msE~~phlIfdNf~t~lG~Rv~~iLkhLFP~pk~ds~Rvvtf~N~~DyIsF 229 (290)
T KOG2781|consen 150 VVSHLPFGPTAFFSLHNVVMRHDIPDIGTMSEQKPHLIFDNFTTKLGKRVKTILKHLFPVPKDDSKRVVTFANRNDYISF 229 (290)
T ss_pred EEEecCCCCceEeeeeeeeecccccccccccccCceEEeccccchHHHHHHHHHHHhCCCCcCCcccEEEEecCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeeecC-CceeEEEeccceeEEEEEEecCcCCCCCCcceeEEecCceecccCC
Q psy16424 241 RHHNYKRDG-KDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRILNSR 295 (295)
Q Consensus 241 RHy~y~~~~-~~v~L~EIGPRf~LkL~kI~~Gt~~~~~~g~~ew~~~~~~~~~~~~ 295 (295)
|||+|...+ +.|.|+|+||||+|+||.|.+||++..+ ||+||+++|||||++.|
T Consensus 230 Rhhvy~~~~~k~vel~evGPRfelklyeIrlGTlE~~~-ad~EW~~rpY~nTa~kR 284 (290)
T KOG2781|consen 230 RHHVYKKTDGKEVELTEVGPRFELKLYEIRLGTLEIKD-ADVEWVLRPYMNTARKR 284 (290)
T ss_pred EEEEEecCCCceEEEeeccccceeeeeeeeecceeccc-cceeEEecchhcchhhh
Confidence 999999885 8999999999999999999999999887 99999999999999764
No 2
>KOG2780|consensus
Probab=100.00 E-value=9.8e-66 Score=465.80 Aligned_cols=246 Identities=35% Similarity=0.599 Sum_probs=230.8
Q ss_pred HhhcCCCCCCcchhhhHHHHHhhccccCCCCccccccccCCCCCCCCCcccHHh--hcCCCCCeEEEEeCCCCCHhHHHH
Q psy16424 34 KSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAVSIGTETSGGGLTHQDDEYR--WAGIEDPKIMITTSRDPSSRLKMF 111 (295)
Q Consensus 34 ~~l~~~~~~p~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ddey~--~~~~~~PKvLITtSr~pS~rl~~f 111 (295)
.+|++.. +|+.+ ++++++.++||+|.++ ++|||.+.+..||||+ +.....|||||||+.+|+.++..|
T Consensus 45 ~el~~~~-~~~~v---p~TIe~~R~yDeT~v~------~~deEl~~d~~~deF~~~~~~~~spKvlITt~~~~~~~t~~~ 114 (302)
T KOG2780|consen 45 PELGELR-PQKNV---PKTIESTRVYDETIVE------EEDEELQADLADDEFSPYFRREFSPKVLITTSKNPKRTTYKF 114 (302)
T ss_pred hhhhhcc-CccCC---cchhhhhhhccccccC------CCcHHHhhhhhhhhhHHHHhcccCccEEEEcCCCCcccHHHH
Confidence 4566554 35555 4578999999999988 7899999999999999 456667999999999999999999
Q ss_pred HHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCceEEEEEceeEeccccCCCCCCC
Q psy16424 112 VKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMS 191 (295)
Q Consensus 112 ~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GPT~~F~I~nv~l~~di~~~g~~~ 191 (295)
|.+|..|+|||....|++..++.++++|...++||++||+|+++.|++|.|+|+|+|||++|.++||++.+||+..|..+
T Consensus 115 ~~eL~~iiPNs~~~~R~~~~vk~i~~~a~~~eftdlvvV~edRkk~n~L~iihlP~GPT~~Fkls~~~~~kdi~k~g~~t 194 (302)
T KOG2780|consen 115 ASELLDIIPNSTVKKRDNYTVKSIVEIAIKREFTDLVVVNEDRKKPNGLKIIHLPNGPTAYFKLSNVVLTKDIKKHGRPT 194 (302)
T ss_pred HHHHHHhCCCceEEecCCchHHHHHHHHHHhcCCceEEEecCcCCccceEEEecCCCCceEEEeecccchhhhhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEeeCCCCchhhHHHHHHHhcCCC-CCCCCCeEEEEeecCCeEEEEEeeeeecC--CceeEEEeccceeEEEEEE
Q psy16424 192 EQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYISFRHHNYKRDG--KDIELKEVGPRFQLKLYEI 268 (295)
Q Consensus 192 ~~~P~LIfnnF~t~lg~~i~~il~~LFp~-p~~~~rRVv~F~n~~d~I~FRHy~y~~~~--~~v~L~EIGPRf~LkL~kI 268 (295)
+|.|+||+|||+|++|+.|+++|++|||. |++.+|||++||||+|+||||||+|.|.. ++|.|+|+||||||+|.++
T Consensus 195 ~h~PElIlNNFtTrlG~~v~r~f~sLfp~~p~f~gRrvvtFhnQrD~IfFRhhRY~Fkee~~kvglqElGPrfTLrL~~l 274 (302)
T KOG2780|consen 195 SHIPELILNNFTTRLGMTVGRLFASLFPHDPQFTGRRVVTFHNQRDYIFFRHHRYEFKEEEIKVGLQELGPRFTLRLRRL 274 (302)
T ss_pred cccchhhhhcccchhhHHHHHHHHHhCCCCccccceeEEEEEecCceEEEEEEEEeecccccccchhhcCCceeeeehhh
Confidence 99999999999999999999999999998 77899999999999999999999999984 7899999999999999999
Q ss_pred ecCcCCCCCCcceeEEecCceec
Q psy16424 269 KLGTLDTVEAADTEWALFRMGRI 291 (295)
Q Consensus 269 ~~Gt~~~~~~g~~ew~~~~~~~~ 291 (295)
+.|+|+.+. |+++|+..+ |.|
T Consensus 275 q~G~fd~K~-ge~~~~~~~-~~t 295 (302)
T KOG2780|consen 275 QKGTFDEKE-GEFEWVHKK-MET 295 (302)
T ss_pred hhccccccc-eeeeeeecc-ccc
Confidence 999999998 999999999 877
No 3
>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.
Probab=100.00 E-value=1.1e-42 Score=305.50 Aligned_cols=170 Identities=38% Similarity=0.669 Sum_probs=80.8
Q ss_pred EEeCCCCCHhHHHHHHHHHhcC-CCcEeeccccc-hHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCceEEEEE
Q psy16424 98 ITTSRDPSSRLKMFVKELRLIF-PNSQRMNRGNY-EMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTM 175 (295)
Q Consensus 98 ITtSr~pS~rl~~f~kdLr~l~-Pns~~~~Rg~~-~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GPT~~F~I 175 (295)
||||++||+++++|++||+.++ ||+.+++|++. .+++++++|..++|+++++|++++++|.+|||+++|+|||++|+|
T Consensus 1 i~ts~~~s~~~~~l~~DL~~l~~p~s~~~~r~~~~~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f~I 80 (191)
T PF04427_consen 1 ITTSRKPSKRLRQLMKDLRSLFPPNSKKLNRKKKNSLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEFSI 80 (191)
T ss_dssp -EESSS--HHHHHHHHHHHTTS-TTEEE---TT---HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCchHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEEEE
Confidence 7999999999999999999999 99999999988 999999999999999999999999999999999999999999999
Q ss_pred ceeEeccccCCCCC-CCCCCcEEEeeCCCCch---hhHHHHHHHhcCCCCC------CCCCeEEEEeecCCe-EEEEEee
Q psy16424 176 SDVIMRHDIPDLGT-MSEQYPHLVFHNFKTQL---GQRVMSILKYLFPVPK------EDSKRIVTFANHDDY-ISFRHHN 244 (295)
Q Consensus 176 ~nv~l~~di~~~g~-~~~~~P~LIfnnF~t~l---g~~i~~il~~LFp~p~------~~~rRVv~F~n~~d~-I~FRHy~ 244 (295)
.||++++|++.... ..+++|+|||+||.++. +++++++|++|||.+. ..++||++|++++|. ||||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~~~d~~I~fR~Y- 159 (191)
T PF04427_consen 81 ENYKLMKDIKSSSKRPKGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSNQRDFVIFFRHY- 159 (191)
T ss_dssp EEEE-HHHHT-------S---EEEEE------------------------------------------------------
T ss_pred EeEEEhhHhcccccCCCCCCeEEEEEecccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 99999999997643 34778999999998766 8999999999999863 468999999999998 999999
Q ss_pred eeecC--------CceeEEEeccceeEEEEEE
Q psy16424 245 YKRDG--------KDIELKEVGPRFQLKLYEI 268 (295)
Q Consensus 245 y~~~~--------~~v~L~EIGPRf~LkL~kI 268 (295)
+...+ ..|+|+||||||+|+|++|
T Consensus 160 i~~~~~~~~~~~~~~v~L~EiGPr~~l~l~kI 191 (191)
T PF04427_consen 160 IFKSGSKNPKKLLPRVELVEIGPRFTLKLRKI 191 (191)
T ss_dssp --------------------------------
T ss_pred ccccccccccccccccccccccccccccccCC
Confidence 53221 2489999999999999987
No 4
>smart00879 Brix Brix domain. The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.
Probab=100.00 E-value=1.2e-38 Score=276.04 Aligned_cols=167 Identities=42% Similarity=0.743 Sum_probs=151.8
Q ss_pred EEEeCCCCCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEee--cCCCCeEEEEeCCCCceEEEE
Q psy16424 97 MITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEH--RGIPDTLVICHLPYGPTAYFT 174 (295)
Q Consensus 97 LITtSr~pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~--rg~p~~L~I~~lP~GPT~~F~ 174 (295)
|||||++||+++++|++||+.++|++.+++|+++.+++++++|...+.++.+++.|. +|+|.+|||+++|+|||++|.
T Consensus 1 lit~sr~~s~~~r~~~~dL~~~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l~f~ 80 (180)
T smart00879 1 LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTLDFK 80 (180)
T ss_pred CEEcCCCCCHHHHHHHHHHHHHCCCcEeecccCccHHHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcEEEE
Confidence 689999999999999999999999999999999999999999999866666666666 899999999999999999999
Q ss_pred EceeEeccccCC--CCCC-CCCCcEEEeeCCCCchhhHHHHHHHhcCCCCCC------CCCeEEEEeecCCeEEEEEeee
Q psy16424 175 MSDVIMRHDIPD--LGTM-SEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKE------DSKRIVTFANHDDYISFRHHNY 245 (295)
Q Consensus 175 I~nv~l~~di~~--~g~~-~~~~P~LIfnnF~t~lg~~i~~il~~LFp~p~~------~~rRVv~F~n~~d~I~FRHy~y 245 (295)
+.+|.+.+|++. .+++ ..++|+|||+||.+..|++++++|++|||.+.. ..+|||+|++++|.|+||||.|
T Consensus 81 i~~v~~~~~~~~~~~~~~~~~~~P~li~~~~~~~~~~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~~~~~I~~R~y~i 160 (180)
T smart00879 81 ILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGKLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFFRHYRI 160 (180)
T ss_pred EECcccHhhhhhhhcCCCcCCCccEEEECCCCCchHHHHHHHHHHHCCCCCccccccCCCCEEEEEEecCCEEEEEEEEE
Confidence 999999999987 3443 678999999999999999999999999998542 4799999999999999999999
Q ss_pred ee--cCCceeEEEeccceeE
Q psy16424 246 KR--DGKDIELKEVGPRFQL 263 (295)
Q Consensus 246 ~~--~~~~v~L~EIGPRf~L 263 (295)
.+ ..++++|+||||||+|
T Consensus 161 ~~~~~~~~v~l~eiGPr~~l 180 (180)
T smart00879 161 KFGKKKPRVELQEIGPRFTL 180 (180)
T ss_pred EccCCCCceEEEEecCCccC
Confidence 84 4578999999999986
No 5
>KOG2971|consensus
Probab=100.00 E-value=1.8e-39 Score=292.70 Aligned_cols=193 Identities=21% Similarity=0.340 Sum_probs=177.0
Q ss_pred CCeEEEEeCCCCCHhHHHHHHHHHhcCCCcEeecc--ccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCce
Q psy16424 93 DPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNR--GNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPT 170 (295)
Q Consensus 93 ~PKvLITtSr~pS~rl~~f~kdLr~l~Pns~~~~R--g~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GPT 170 (295)
..+|||++||+.|-+.++||+||..++||+....+ .+..+..|.++|..++|+.+++|..++..++|||++..|+|||
T Consensus 49 K~rvlv~ssRgis~R~RhLm~di~~Llph~k~dsk~d~~k~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~GpS 128 (299)
T KOG2971|consen 49 KERVLVLSSRGISFRTRHLMKDISSLLPHSKKDSKLDRKKKLGVLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGPS 128 (299)
T ss_pred ceeEEEEecCCchHHHHHHHHHHHHhcccccccchhhhcchHHHHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCCc
Confidence 47999999999999999999999999999987654 3567888999999999999999999999999999999999999
Q ss_pred EEEEEceeEeccccCCCCCC-CCCCcEEEee-CCCC-chhhHHHHHHHhcCCCCC------CCCCeEEEEeecCCeEEEE
Q psy16424 171 AYFTMSDVIMRHDIPDLGTM-SEQYPHLVFH-NFKT-QLGQRVMSILKYLFPVPK------EDSKRIVTFANHDDYISFR 241 (295)
Q Consensus 171 ~~F~I~nv~l~~di~~~g~~-~~~~P~LIfn-nF~t-~lg~~i~~il~~LFp~p~------~~~rRVv~F~n~~d~I~FR 241 (295)
+.|.|+|++++.|++..||| .+++|.|.|+ +|.+ ++-++++++|.+.|..|+ ...++|++|+..+|.||||
T Consensus 129 vkFlv~n~hTM~ElkmtgN~lkgsrplLsFd~~Fd~~pHlkl~Kell~q~fgiP~~hrkSkpf~Dhvf~Fsi~D~~IWfR 208 (299)
T KOG2971|consen 129 VKFLVHNVHTMAELKMTGNCLKGSRPLLSFDKAFDELPHLKLLKELLEQIFGIPKHHRKSKPFVDHVFTFSILDGKIWFR 208 (299)
T ss_pred eEEehhhhhhHHHhCCccccccCCcceeecccccccchHHHHHHHHHHHHcCCCCCCcccCCccceEEEEEEecCeEEEE
Confidence 99999999999999999998 7899999998 5986 677999999999998764 3468999999999999999
Q ss_pred EeeeeecCCceeEEEeccceeEEEEEEecCcCCCCCCcceeEEecCcee
Q psy16424 242 HHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGR 290 (295)
Q Consensus 242 Hy~y~~~~~~v~L~EIGPRf~LkL~kI~~Gt~~~~~~g~~ew~~~~~~~ 290 (295)
+|+|.. .+++.|.||||||+|.+++|.+|+|+ |.+.|.+..|+.
T Consensus 209 nyqI~~-~ed~~L~EiGPRfvl~~ikif~gsFg----G~~lYenp~yvs 252 (299)
T KOG2971|consen 209 NYQISE-EEDKTLIEIGPRFVLNVIKIFEGSFG----GPTLYENPKYVS 252 (299)
T ss_pred EeEecc-ccCcceeeeccHHHHhHHHHHhccCC----CceeecCccccC
Confidence 999963 36799999999999999999999999 999999999864
No 6
>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=269.49 Aligned_cols=181 Identities=37% Similarity=0.598 Sum_probs=173.3
Q ss_pred CeEEEEeCCCCCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeC-CCCceEE
Q psy16424 94 PKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHL-PYGPTAY 172 (295)
Q Consensus 94 PKvLITtSr~pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~l-P~GPT~~ 172 (295)
||+||||||+||+++++|++||..+|||+.+..||+.++.++++.|...|.++++|++|++|+|..|.++++ |.||+++
T Consensus 2 ~~~liTTSRkPS~Rtr~Fak~L~~~lp~~~~~~rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~~~~~ 81 (191)
T COG2136 2 PKMLLTTSRKPSRRTRSFAKDLSRVLPNAYFLRRGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEGLTFS 81 (191)
T ss_pred CcEEEEecCCccHHHHHHHHHHHHhCCcceEEecCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCCceEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEceeEeccccCCCCC-CCCCCcEEEeeCCCCchh-hHHHHHHHhc----CCC-CCCCCCeEEEEeecCCeEEEEEeee
Q psy16424 173 FTMSDVIMRHDIPDLGT-MSEQYPHLVFHNFKTQLG-QRVMSILKYL----FPV-PKEDSKRIVTFANHDDYISFRHHNY 245 (295)
Q Consensus 173 F~I~nv~l~~di~~~g~-~~~~~P~LIfnnF~t~lg-~~i~~il~~L----Fp~-p~~~~rRVv~F~n~~d~I~FRHy~y 245 (295)
|+|+|++++++++..++ ...+.|++|++||.+.+| +.+.++|+.+ |+. +......|+++++++++++||+|.|
T Consensus 82 f~l~~v~l~re~~~~~~~~~~~~~~~I~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~v~~~~~~~~f~~~~~~~~ 161 (191)
T COG2136 82 FKLSGVKLRREIPVLGPKSRLHGPELIFNNFTTLLGFLKVAEAFSELLLVKFVPNPAWEHELVATGANKGDFKSLRRHRR 161 (191)
T ss_pred EEEecceEEEeccccCCcccCCCCceeeecccccccchhhHHHHHhhcccccccCcccceeeeeeccccceEEEEEeeee
Confidence 99999999999999987 678999999999999998 8999999999 876 6667899999999999999999999
Q ss_pred eecCCceeEEEeccceeEEEEEEecCcCC
Q psy16424 246 KRDGKDIELKEVGPRFQLKLYEIKLGTLD 274 (295)
Q Consensus 246 ~~~~~~v~L~EIGPRf~LkL~kI~~Gt~~ 274 (295)
.+....+.++|+||||+|++..++.|+.+
T Consensus 162 ~~~~~~~~~~~vgp~~~~r~~~~~~g~~~ 190 (191)
T COG2136 162 VFEEDGIGLEEVGPRLTLRLWRMEDGRGE 190 (191)
T ss_pred EeeeeeeeEEEeCceeeeehhhhhhcccc
Confidence 99878899999999999999999999654
No 7
>KOG2963|consensus
Probab=100.00 E-value=1.3e-35 Score=277.57 Aligned_cols=189 Identities=23% Similarity=0.383 Sum_probs=166.4
Q ss_pred CCCeEEEEeCCCCCHhHHHHHHHHHhcC-CCcEee--ccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCC
Q psy16424 92 EDPKIMITTSRDPSSRLKMFVKELRLIF-PNSQRM--NRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYG 168 (295)
Q Consensus 92 ~~PKvLITtSr~pS~rl~~f~kdLr~l~-Pns~~~--~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~G 168 (295)
..|.++|.+++.....+++|..|||.+| ||+..- .|+.++|||++.+|+.+||||+++++.+.. ..+|.|+++|.|
T Consensus 24 ~~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~iKDfv~~~gplGVTH~l~lskt~~-nlslki~R~PqG 102 (405)
T KOG2963|consen 24 KSPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNKLKDFVVMSGPLGVTHLLMLSKTET-NLSLKIARTPQG 102 (405)
T ss_pred cCceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhhhhhHHhhcccccceEEEEEecccC-ceeEEEEecCCC
Confidence 3589999999999999999999999999 998753 478999999999999999999999999886 589999999999
Q ss_pred ceEEEEEceeEeccccCCCCC---C----CCCCcEEEeeCCCC---chhhHHHHHHHhcCCCCC------CCCCeEEEEe
Q psy16424 169 PTAYFTMSDVIMRHDIPDLGT---M----SEQYPHLVFHNFKT---QLGQRVMSILKYLFPVPK------EDSKRIVTFA 232 (295)
Q Consensus 169 PT~~F~I~nv~l~~di~~~g~---~----~~~~P~LIfnnF~t---~lg~~i~~il~~LFp~p~------~~~rRVv~F~ 232 (295)
||++|+|+.|+|.+|+..... + ..++|+||+|||++ ++.+++.+|||+|||+.+ .+++||+.++
T Consensus 103 PTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNgFg~~~~~HlkL~~t~FQNmFPsInv~tvnlntikRcllin 182 (405)
T KOG2963|consen 103 PTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNGFGTSGRKHLKLMTTMFQNMFPSINVATVNLNTIKRCLLIN 182 (405)
T ss_pred CceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEccCCCCcchhHHHHHHHHHHcCCCcCcceeeccceeEEEEEe
Confidence 999999999999999987532 2 57899999999986 466899999999999843 4689999999
Q ss_pred e--cCCeEEEEEeeeeec-------------------------------------C------------------------
Q psy16424 233 N--HDDYISFRHHNYKRD-------------------------------------G------------------------ 249 (295)
Q Consensus 233 n--~~d~I~FRHy~y~~~-------------------------------------~------------------------ 249 (295)
+ +.+.|.||||.|... +
T Consensus 183 yn~dt~eIdmRHysI~vvpVGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~~g~~~seSE~e~d~~~~i~~~~~~~~ 262 (405)
T KOG2963|consen 183 YNRDTGEIDMRHYSIRVVPVGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLKGGLYASESEIEDDATVRIVDNQDVKE 262 (405)
T ss_pred cCCCCCeeeeeeeEEEEEecccchHHHHHHhhhcccCCCCCchhhhhHHHHhcCCcccccccccccccceEEeccccchh
Confidence 7 456999999998541 0
Q ss_pred ------------------CceeEEEeccceeEEEEEEecCcCCCCCCcceeEEe
Q psy16424 250 ------------------KDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285 (295)
Q Consensus 250 ------------------~~v~L~EIGPRf~LkL~kI~~Gt~~~~~~g~~ew~~ 285 (295)
..|+|+|||||+||+|+||++|.++ |+|.|.-
T Consensus 263 eveL~q~~~s~g~~~~qksaikL~EIGPRlTlqLvKIeEGi~~----GkVlyH~ 312 (405)
T KOG2963|consen 263 EVELPQPKASRGNQPPQKSAIKLTEIGPRLTLQLVKIEEGICE----GKVLYHE 312 (405)
T ss_pred hhhccccccccCCCcccccceeeEeecccceEEEEEeeccccc----cceEEee
Confidence 1589999999999999999999999 9998853
No 8
>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-35 Score=260.11 Aligned_cols=207 Identities=23% Similarity=0.373 Sum_probs=184.2
Q ss_pred CcccHHhh---cC-CCCCeEEEEeCCCCCHhHHHHHHHHHhcCCCcEeeccc--cchHHHHHHHHHhCCCCeEEEEEeec
Q psy16424 81 HQDDEYRW---AG-IEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRG--NYEMKQLIHACRANDVTDFIVVHEHR 154 (295)
Q Consensus 81 ~~ddey~~---~~-~~~PKvLITtSr~pS~rl~~f~kdLr~l~Pns~~~~Rg--~~~lkdlve~a~~~~~t~lii~~e~r 154 (295)
+.|.||-. +| ....+++|++||++|.+.+||++||..++||+....+. +..+.++.++|...+|+++++|..++
T Consensus 14 d~~~e~~qgn~~~f~~kq~~lilSsRGvsyr~RHL~~Dls~l~phskke~KlD~kk~l~qLnelaelynCnn~lFFesrk 93 (283)
T COG5154 14 DEDEEYVQGNSAGFVPKQTSLILSSRGVSYRIRHLMKDLSRLVPHSKKEQKLDMKKNLGQLNELAELYNCNNMLFFESRK 93 (283)
T ss_pred cchhHHhccchhcccccceEEEEecCCchHHHHHHHHHHHHhCcccccccccchhhhHHHHHHHHHHhcCCceEEEeecc
Confidence 34556762 33 34679999999999999999999999999999877653 66788999999999999999999999
Q ss_pred CCCCeEEEEeCCCCceEEEEEceeEeccccCCCCCC-CCCCcEEEeeC-CCC-chhhHHHHHHHhcCCCCC------CCC
Q psy16424 155 GIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTM-SEQYPHLVFHN-FKT-QLGQRVMSILKYLFPVPK------EDS 225 (295)
Q Consensus 155 g~p~~L~I~~lP~GPT~~F~I~nv~l~~di~~~g~~-~~~~P~LIfnn-F~t-~lg~~i~~il~~LFp~p~------~~~ 225 (295)
..+.+||+++.|+|||+.|.++|.++++|+...||+ .++.|.|.|+. |.+ |+-+.++++|++.|..|+ ...
T Consensus 94 r~Dlyl~~ar~pnGptvkF~~~NlhTMdelNftgN~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ip~~arrSkpfi 173 (283)
T COG5154 94 RSDLYLMGARIPNGPTVKFRMHNLHTMDELNFTGNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGARRSKPFI 173 (283)
T ss_pred cccceeeeccCCCCCeEEEEEeccchHhhcCCccccccCCcceEeeccccccchHHHHHHHHHHHhccCCCcccccccch
Confidence 999999999999999999999999999999999997 78999999985 886 777999999999998864 347
Q ss_pred CeEEEEeecCCeEEEEEeeeeec----CCceeEEEeccceeEEEEEEecCcCCCCCCcceeEEecCceec
Q psy16424 226 KRIVTFANHDDYISFRHHNYKRD----GKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRI 291 (295)
Q Consensus 226 rRVv~F~n~~d~I~FRHy~y~~~----~~~v~L~EIGPRf~LkL~kI~~Gt~~~~~~g~~ew~~~~~~~~ 291 (295)
++|++|+..+|.||||.|.|... .++|+|.||||||.|.+++|.+|+|. |...|.+..|+..
T Consensus 174 D~v~~f~i~DgkIWvR~YeI~re~ed~~~dv~L~EIGPRfVmtvi~iLEgsFg----Gp~iYkn~~~vs~ 239 (283)
T COG5154 174 DKVLCFFILDGKIWVRCYEIGRENEDKSKDVKLEEIGPRFVMTVIKILEGSFG----GPAIYKNETFVSS 239 (283)
T ss_pred hheEEEEEecCeEEEEEEeeccccccccccceeeeeccHHHHHHHHHHHhccC----Cceeeecccccch
Confidence 89999999999999999999643 36799999999999999999999999 8899999988753
No 9
>PRK03972 ribosomal biogenesis protein; Validated
Probab=99.97 E-value=3.4e-29 Score=223.30 Aligned_cols=173 Identities=18% Similarity=0.349 Sum_probs=137.9
Q ss_pred EEEEeCCCCCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCC---CceEE
Q psy16424 96 IMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPY---GPTAY 172 (295)
Q Consensus 96 vLITtSr~pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~---GPT~~ 172 (295)
||||||++||+++++|++||..+||||.+++||+.++++|++.|..+|+|++|||+|++|+|++|.|+|||. |||++
T Consensus 2 iLITTSr~PS~rtr~F~keL~~v~Pns~~i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GPTa~ 81 (208)
T PRK03972 2 MLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGYLGY 81 (208)
T ss_pred EEEECCCCccHHHHHHHHHHHHhCCCCEEEecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCceEE
Confidence 799999999999999999999999999999999999999999999999999999999999999999999985 55999
Q ss_pred EEEceeEecccc--CCCCCCCCCCcEEEeeCCCCchhh-HHHHHHHhcCCCC---CC-CC----------CeEEEEeecC
Q psy16424 173 FTMSDVIMRHDI--PDLGTMSEQYPHLVFHNFKTQLGQ-RVMSILKYLFPVP---KE-DS----------KRIVTFANHD 235 (295)
Q Consensus 173 F~I~nv~l~~di--~~~g~~~~~~P~LIfnnF~t~lg~-~i~~il~~LFp~p---~~-~~----------rRVv~F~n~~ 235 (295)
|+|+||++++|| ++.+++++++|++|.++|.+.+|. ..+..+...+..| .. .| +-|+......
T Consensus 82 FkLsnV~l~~ei~~~~~~~~s~~~p~iItts~kt~~g~~~~Ak~lA~eLgi~yV~R~k~Sl~~L~~~~~~d~vLVV~~~~ 161 (208)
T PRK03972 82 LYLHGIKLQREMGFRNLRPIREDMPLVITTAKRVGLDHMAFAQVFAELTGGKFVPRGGKSLQDIADKYNTDVLGVIERHP 161 (208)
T ss_pred EEEccEEEHHHcccCCCCCccccccEEEEcCCCCCHHHHHHHHHHHHHhCCceeCcCCcCHHHHHhhhcCceEEEEecCC
Confidence 999999999999 457889999999999999999985 5666777777653 11 11 2222222211
Q ss_pred CeEEEEEeeeeecCCceeEEEeccceeEEEEEEecCc
Q psy16424 236 DYISFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGT 272 (295)
Q Consensus 236 d~I~FRHy~y~~~~~~v~L~EIGPRf~LkL~kI~~Gt 272 (295)
--.-+-.|++... +-.-+||-+..+.+..+.|-
T Consensus 162 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 194 (208)
T PRK03972 162 RGMAVNFYRLDVT----KERPVGPLIFVKIWIMEDGR 194 (208)
T ss_pred CceEEEEEEeccc----cccccCCcEEEEEEEeccCc
Confidence 1123333444322 22346999988887776553
No 10
>PRK00933 ribosomal biogenesis protein; Validated
Probab=99.49 E-value=8.4e-13 Score=114.87 Aligned_cols=149 Identities=24% Similarity=0.473 Sum_probs=105.2
Q ss_pred EEEEeCCCCCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCceEEEEE
Q psy16424 96 IMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTM 175 (295)
Q Consensus 96 vLITtSr~pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GPT~~F~I 175 (295)
++||||++||.++++|+++|...+ |+.+++||+.+++++++.|.. .++++|+|++|+|++|.|+.+-..+.+.+.+
T Consensus 1 mIITTSrkPs~~t~~fAkeLa~~l-n~~yv~Rgk~Sl~eL~~~~~~---~~llVV~E~kg~P~~L~iyd~~~~~~~~~~~ 76 (165)
T PRK00933 1 MIITTSRKPSQRTRSLVKDLARFL-NCKYVNRGKMSLQELLEECEA---RYLLIIGEYKGNPGALKFYDVEGNKLLSYRL 76 (165)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHh-CCEEEccCCccHHHHHHHhcc---CcEEEEECCCCCCceEEEEECCCCEEEEEEE
Confidence 489999999999999999999999 999999999999999887654 4999999999999999999998888777655
Q ss_pred ceeEeccccCCCCCCCCCCcEEEeeCCCCchhhHHHHHHHhcCC-C-CC-----------CCCCeEEEEeecCCeEEEEE
Q psy16424 176 SDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFP-V-PK-----------EDSKRIVTFANHDDYISFRH 242 (295)
Q Consensus 176 ~nv~l~~di~~~g~~~~~~P~LIfnnF~t~lg~~i~~il~~LFp-~-p~-----------~~~rRVv~F~n~~d~I~FRH 242 (295)
++.+..+.... ......|.+ .++... +.-+.++|..... . |+ ..++.++.|...+..+|
T Consensus 77 -~v~~~~~~~~~-~~~~~~p~~--~~~~~~-~~~~~e~f~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f--- 148 (165)
T PRK00933 77 -SVKLQREISGP-VFKNRRPIK--SAFDVG-GDELAELFDYFLFYDLDEVRGLFDTVCLIEDGDIVLEFLGSDKSLF--- 148 (165)
T ss_pred -EeeeecccCcc-eeecCCCcc--cchhhH-HHHHHHHHHHHHhhhhhhhhcccCceeEeecCCceEEEecCCccee---
Confidence 57777776533 234444533 333322 4444554444322 1 21 12334444433333333
Q ss_pred eeeeecCCceeEEEeccceeEEEEEEec
Q psy16424 243 HNYKRDGKDIELKEVGPRFQLKLYEIKL 270 (295)
Q Consensus 243 y~y~~~~~~v~L~EIGPRf~LkL~kI~~ 270 (295)
+||++.++=+++..
T Consensus 149 --------------~gp~~~i~~~k~~~ 162 (165)
T PRK00933 149 --------------IGPRLKIKGIKKMD 162 (165)
T ss_pred --------------ecceeEEEEEEEEe
Confidence 89999999888753
No 11
>KOG3031|consensus
Probab=99.47 E-value=2e-13 Score=125.87 Aligned_cols=169 Identities=22% Similarity=0.287 Sum_probs=134.3
Q ss_pred CCCCHhHHHHHHHHHhcC-CCcEeeccccch-----HHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCc---eEE
Q psy16424 102 RDPSSRLKMFVKELRLIF-PNSQRMNRGNYE-----MKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGP---TAY 172 (295)
Q Consensus 102 r~pS~rl~~f~kdLr~l~-Pns~~~~Rg~~~-----lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GP---T~~ 172 (295)
...+..+.+-|.||..+- |-+..++|+++. -..+..+...+.|+-+++-+-+++.|++|+|++.-++- .+.
T Consensus 36 ~~~~~tl~~vm~dl~alKKp~~i~~~rkN~i~pFEd~ssleffseK~D~slfv~gs~sKKrp~nLv~gR~fd~~vlDMiE 115 (307)
T KOG3031|consen 36 MKTNKTLLDVMKDLYALKKPLEIRYNRKNNIHPFEDPSSLEFFSEKNDCSLFVLGSHSKKRPNNLVIGRTFDYEVLDMIE 115 (307)
T ss_pred hhhchHHHHHHHHHHHhccCceeeeccCCCcccCCCCchHHHHhhhhhhhhhhhccccccCCCceEEEEecCchhhHHHH
Confidence 345588999999999996 999999998642 12344444555555555555557889999999999986 478
Q ss_pred EEEceeEeccccCCCCCCCCCCcEEEeeC--CC-CchhhHHHHHHHhcCCCCCC------CCCeEEEEeecCCe-EEEEE
Q psy16424 173 FTMSDVIMRHDIPDLGTMSEQYPHLVFHN--FK-TQLGQRVMSILKYLFPVPKE------DSKRIVTFANHDDY-ISFRH 242 (295)
Q Consensus 173 F~I~nv~l~~di~~~g~~~~~~P~LIfnn--F~-t~lg~~i~~il~~LFp~p~~------~~rRVv~F~n~~d~-I~FRH 242 (295)
+.|.||...+|+...+-..+..|+|+|+| |. ++.-++++++|..+|..+.- .-++|+.|+..++. |+|||
T Consensus 116 lgI~~ykslsdF~~~k~~~gtKP~l~f~G~~f~~~~~~krlknL~vDfFrge~vd~v~l~Gl~~v~vfta~~~~~v~~r~ 195 (307)
T KOG3031|consen 116 LGIENYKSLSDFKAAKITEGTKPMLIFQGAVFDQHPEYKRLKNLFVDFFRGEKVDKVRLAGLEYVIVFTATEETNVLFRV 195 (307)
T ss_pred HhhhhhhhhhhhhccCCCCCCCceEEEecchhccChHHHHHHHHHHHHHcCCcccceeeccccEEEEEEeecCceeeeee
Confidence 99999999999988764468899999999 44 46668999999999988632 35899999987775 99999
Q ss_pred eeeeec--C---CceeEEEeccceeEEEEEEec
Q psy16424 243 HNYKRD--G---KDIELKEVGPRFQLKLYEIKL 270 (295)
Q Consensus 243 y~y~~~--~---~~v~L~EIGPRf~LkL~kI~~ 270 (295)
|..... + +.|+|.|+||+++|.+.+...
T Consensus 196 Y~lklkKs~~~~PRiELeE~GPsldf~irR~~~ 228 (307)
T KOG3031|consen 196 YRLKLKKSGTRTPRIELEEMGPSLDFEIRRTKL 228 (307)
T ss_pred eeeeeeeccCCCCceehhhcCCceeEEEEeccC
Confidence 987643 3 569999999999999999875
No 12
>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=4.5e-06 Score=76.35 Aligned_cols=168 Identities=17% Similarity=0.169 Sum_probs=124.2
Q ss_pred CCCHhHHHHHHHHHhcC-CCcEeeccccch--HH---HHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCc---eEEE
Q psy16424 103 DPSSRLKMFVKELRLIF-PNSQRMNRGNYE--MK---QLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGP---TAYF 173 (295)
Q Consensus 103 ~pS~rl~~f~kdLr~l~-Pns~~~~Rg~~~--lk---dlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GP---T~~F 173 (295)
..++.+...+=|+..+- |-...++|++.. .. -+--+...+.+.-.+++...++.+.+|.|.+.-+-- .+.|
T Consensus 37 s~~k~lldvi~d~~alkkp~~i~f~rkn~ihpfEd~SplEffseknd~~l~vl~ts~kKr~hnlt~~R~Fny~~~DMiEl 116 (316)
T COG5106 37 SERKTLLDVICDTEALKKPKEIGFIRKNTIHPFEDTSPLEFFSEKNDKKLSVLFTSVKKRRHNLTIGRAFNYELIDMIEL 116 (316)
T ss_pred ccchhhhhhhcchhhhccchhhccccCCcccccccCCHHHHHHHhhhhhhhhhhhhccccccceeEEeecchHHHHHHHH
Confidence 34456677777777764 888888887542 11 233345566777778888888899999999876643 4678
Q ss_pred EEceeEeccccCCCCCCCCCCcEEEeeC--CCC-chhhHHHHHHHhcCCC-CC--CC---CCeEEEEeecCC--------
Q psy16424 174 TMSDVIMRHDIPDLGTMSEQYPHLVFHN--FKT-QLGQRVMSILKYLFPV-PK--ED---SKRIVTFANHDD-------- 236 (295)
Q Consensus 174 ~I~nv~l~~di~~~g~~~~~~P~LIfnn--F~t-~lg~~i~~il~~LFp~-p~--~~---~rRVv~F~n~~d-------- 236 (295)
.|.+|....|+...+...+..|.++|.| |++ |.-++++.+|-..|.. +. .+ -..|+.-+.+++
T Consensus 117 ~i~~yksvsdF~~~~~~~g~Kpmv~fQg~~fd~hp~yr~iksLflDFFrges~~~ldsagls~Vi~~t~~g~~~d~~plp 196 (316)
T COG5106 117 KINRYKSVSDFECAGPELGMKPMVVFQGINFDAHPTYRRIKSLFLDFFRGESSKVLDSAGLSWVIARTEEGYVLDTYPLP 196 (316)
T ss_pred hhhhhhehhhhhccCCccCCceEEEEeccccccchHHHHHHHHHHHHHcCCchhhhhhcceeEEEEEecchhhhcccccc
Confidence 8999999999988887788899999997 775 5668899999999987 31 12 357777765543
Q ss_pred eEEEEEeeee--ec---CCceeEEEeccceeEEEEEEec
Q psy16424 237 YISFRHHNYK--RD---GKDIELKEVGPRFQLKLYEIKL 270 (295)
Q Consensus 237 ~I~FRHy~y~--~~---~~~v~L~EIGPRf~LkL~kI~~ 270 (295)
.+.||-|.-. ++ -..++|.|+|||+++++.++.-
T Consensus 197 ~v~fRVyk~k~~kt~~~lpr~elee~GPrldf~i~R~~~ 235 (316)
T COG5106 197 LVVFRVYKTKLLKTKTNLPRLELEECGPRLDFEIVRSYH 235 (316)
T ss_pred ceeeeeeecccccccCCCCceehhhcccceeeEEEeecC
Confidence 3578887643 11 2579999999999999999864
No 13
>PRK03972 ribosomal biogenesis protein; Validated
Probab=95.34 E-value=0.13 Score=46.55 Aligned_cols=76 Identities=14% Similarity=0.245 Sum_probs=57.7
Q ss_pred EEEEeCCCCCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEe------CCCCc
Q psy16424 96 IMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICH------LPYGP 169 (295)
Q Consensus 96 vLITtSr~pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~------lP~GP 169 (295)
.+|||+.+++..+...++.+...+ +..++.|++.++.+|. ...+..+++||..|-. ...+.+.+ -|-||
T Consensus 107 ~iItts~kt~~g~~~~Ak~lA~eL-gi~yV~R~k~Sl~~L~---~~~~~d~vLVV~~~~~-~~~~~~~~~~~~~~~~~~~ 181 (208)
T PRK03972 107 LVITTAKRVGLDHMAFAQVFAELT-GGKFVPRGGKSLQDIA---DKYNTDVLGVIERHPR-GMAVNFYRLDVTKERPVGP 181 (208)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh-CCceeCcCCcCHHHHH---hhhcCceEEEEecCCC-ceEEEEEEeccccccccCC
Confidence 589999999999999999999998 8888999999999875 3456678888866521 13455555 36788
Q ss_pred eEEEEEc
Q psy16424 170 TAYFTMS 176 (295)
Q Consensus 170 T~~F~I~ 176 (295)
.+..++-
T Consensus 182 ~~~~~~~ 188 (208)
T PRK03972 182 LIFVKIW 188 (208)
T ss_pred cEEEEEE
Confidence 8776653
No 14
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=65.83 E-value=35 Score=25.20 Aligned_cols=75 Identities=15% Similarity=0.093 Sum_probs=51.3
Q ss_pred eEEEEeCCC-CCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCce
Q psy16424 95 KIMITTSRD-PSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPT 170 (295)
Q Consensus 95 KvLITtSr~-pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GPT 170 (295)
+++|+.... .-.....+++.|+..-=.+....+ +.+++.-...|...|+..+|++.+..-....+.+-.+..|-.
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~-~~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~~~~~~ 78 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLR-NEKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTRDGGDL 78 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCcc
Confidence 556665433 334667788888865212333344 458899999999999999999998754456777777766643
No 15
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=62.16 E-value=5.2 Score=38.32 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=24.1
Q ss_pred EeccceeEEEEEEecCcCCCCC-CcceeEEecCce
Q psy16424 256 EVGPRFQLKLYEIKLGTLDTVE-AADTEWALFRMG 289 (295)
Q Consensus 256 EIGPRf~LkL~kI~~Gt~~~~~-~g~~ew~~~~~~ 289 (295)
-|||-|+|.+|.|+.|--..+. .+...+.|+--|
T Consensus 188 qvGP~F~lslY~lF~~~sr~~~~~~~~~~tWKE~~ 222 (302)
T PF05508_consen 188 QVGPTFTLSLYMLFYGHSRPKYEEGLRKITWKEVM 222 (302)
T ss_pred ccCCcEEEEeeheecccccccccccccCcceeeec
Confidence 4699999999999999876532 155556555444
No 16
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=60.95 E-value=38 Score=25.35 Aligned_cols=67 Identities=12% Similarity=-0.033 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCceEEEE
Q psy16424 107 RLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFT 174 (295)
Q Consensus 107 rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GPT~~F~ 174 (295)
....++..|+..-=.+....++ .+++.-+..|...|+..++++++..-....+.|-.+-.|-.....
T Consensus 19 ~a~~la~~Lr~~g~~v~~d~~~-~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~~~~~~~~~~ 85 (94)
T cd00861 19 LAEKLYAELQAAGVDVLLDDRN-ERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVRKTGEKEEIS 85 (94)
T ss_pred HHHHHHHHHHHCCCEEEEECCC-CCcccchhHHHhcCCCEEEEECCchhhCCEEEEEECCCCcceEEe
Confidence 4455666666531122222343 378888889999999999999987544467888777777544433
No 17
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=50.76 E-value=61 Score=24.35 Aligned_cols=81 Identities=10% Similarity=0.154 Sum_probs=56.3
Q ss_pred EEEEeCCCCCHhHHHHHHHHHhcCCCc---EeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCceEE
Q psy16424 96 IMITTSRDPSSRLKMFVKELRLIFPNS---QRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAY 172 (295)
Q Consensus 96 vLITtSr~pS~rl~~f~kdLr~l~Pns---~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GPT~~ 172 (295)
|.|++-..-+.....++.++...+-+. ..+.-...++..=+..|...|+..++++++..-....+.|-.+-.|....
T Consensus 2 v~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~~~ 81 (94)
T PF03129_consen 2 VVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEKELENGTVTVKDRDTGEQET 81 (94)
T ss_dssp EEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHHHHHTTEEEEEETTTTEEEE
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEECchhHhCCEEEEEECCCCcEEE
Confidence 455554443556777777777776222 22333677888888999999999999999875434788888888886555
Q ss_pred EEEc
Q psy16424 173 FTMS 176 (295)
Q Consensus 173 F~I~ 176 (295)
.++.
T Consensus 82 v~~~ 85 (94)
T PF03129_consen 82 VSLE 85 (94)
T ss_dssp EECC
T ss_pred EEHH
Confidence 5544
No 18
>PF04921 XAP5: XAP5, circadian clock regulator; InterPro: IPR007005 These proteins are found in a wide range of eukaryotes. Their function is uncertain though they are nuclear proteins, possibly with DNA-binding activity.; GO: 0005634 nucleus
Probab=50.59 E-value=16 Score=33.98 Aligned_cols=82 Identities=20% Similarity=0.350 Sum_probs=54.9
Q ss_pred CCcccHHh-hcCCCCCeEEEEeCCCCCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCC
Q psy16424 80 THQDDEYR-WAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPD 158 (295)
Q Consensus 80 ~~~ddey~-~~~~~~PKvLITtSr~pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~ 158 (295)
++++=-|+ |.|..-|+ -|+.-.+ ..+-+|+.-.+..+. +++-+++.. ++.+||+|-++==.|.
T Consensus 97 eeI~I~fsywDGs~hrr-~v~vKKG--dtI~~FL~~~r~~l~------------~~f~el~~v-svd~LM~VkedlIiPH 160 (239)
T PF04921_consen 97 EEIEIPFSYWDGSGHRR-TVRVKKG--DTIWQFLEKCRKQLA------------KEFRELRRV-SVDDLMYVKEDLIIPH 160 (239)
T ss_pred CeeEEEEEEECCCCCcc-eEEEcCC--CCHHHHHHHHHHHHH------------HHhHHHHhc-CHhheeeeccceeccC
Confidence 44555777 78988899 4444444 457888888877764 445555555 8889999988643454
Q ss_pred eEEE-------EeCCCCceEEEEEce
Q psy16424 159 TLVI-------CHLPYGPTAYFTMSD 177 (295)
Q Consensus 159 ~L~I-------~~lP~GPT~~F~I~n 177 (295)
...+ +.-+.||-+.|.+..
T Consensus 161 hy~FY~fI~nka~GksGpLF~fd~~~ 186 (239)
T PF04921_consen 161 HYTFYDFIVNKARGKSGPLFDFDVHD 186 (239)
T ss_pred CceeeeeeeccccCCCCCeeeccCCc
Confidence 4444 334778887777776
No 19
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=49.74 E-value=1.1e+02 Score=24.59 Aligned_cols=75 Identities=13% Similarity=-0.048 Sum_probs=51.3
Q ss_pred CCeEEEEeCC--CC-CHhHHHHHHHHHhcCCCcEee-ccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCC
Q psy16424 93 DPKIMITTSR--DP-SSRLKMFVKELRLIFPNSQRM-NRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYG 168 (295)
Q Consensus 93 ~PKvLITtSr--~p-S~rl~~f~kdLr~l~Pns~~~-~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~G 168 (295)
.+.++|+... .. ......++..|+.-= -+..+ .+ .+++.-+..|...|+..++++.+..-....+.+..+..|
T Consensus 26 p~~v~Ii~~~~~~~~~~~a~~la~~LR~~g-i~v~~d~~--~sl~kqlk~A~k~g~~~~iiiG~~e~~~~~v~lk~l~~~ 102 (121)
T cd00858 26 PIKVAVLPLVKRDELVEIAKEISEELRELG-FSVKYDDS--GSIGRRYARQDEIGTPFCVTVDFDTLEDGTVTIRERDSM 102 (121)
T ss_pred CcEEEEEecCCcHHHHHHHHHHHHHHHHCC-CEEEEeCC--CCHHHHHHHhHhcCCCEEEEECcCchhCCEEEEEECCCC
Confidence 4577777765 22 235566777777631 12222 34 589999999999999999999987544567778777766
Q ss_pred ce
Q psy16424 169 PT 170 (295)
Q Consensus 169 PT 170 (295)
-.
T Consensus 103 ~~ 104 (121)
T cd00858 103 RQ 104 (121)
T ss_pred ce
Confidence 44
No 20
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=47.54 E-value=1e+02 Score=22.07 Aligned_cols=76 Identities=9% Similarity=0.047 Sum_probs=48.8
Q ss_pred CeEEEEeCCCC-CHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCce
Q psy16424 94 PKIMITTSRDP-SSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPT 170 (295)
Q Consensus 94 PKvLITtSr~p-S~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GPT 170 (295)
+.|+|...... -.....++..|+.--=....... ..++++....|...|+..++++.+.......+.+..+..|..
T Consensus 2 ~~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~-~~~~~~~~~~a~~~~~~~~i~i~~~~~~~~~~~i~~~~~~~~ 78 (91)
T cd00859 2 VDVYVVPLGEGALSEALELAEQLRDAGIKAEIDYG-GRKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLETGEQ 78 (91)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecC-CCCHHHHHHHHHHcCCCEEEEEcHHHHhCCcEEEEECCCCCc
Confidence 46777765543 23567788888864111222222 235788999999999999999986533334677777766654
No 21
>COG1783 XtmB Phage terminase large subunit [General function prediction only]
Probab=41.67 E-value=1.1e+02 Score=30.66 Aligned_cols=89 Identities=17% Similarity=0.136 Sum_probs=57.4
Q ss_pred cccHHhhcCCCCCe-EEEEeCCCCCHhHHHHHHHHHhcC--CCc-Eeecc-c-----cchHHHHHHHHHhCCCCeEEEEE
Q psy16424 82 QDDEYRWAGIEDPK-IMITTSRDPSSRLKMFVKELRLIF--PNS-QRMNR-G-----NYEMKQLIHACRANDVTDFIVVH 151 (295)
Q Consensus 82 ~ddey~~~~~~~PK-vLITtSr~pS~rl~~f~kdLr~l~--Pns-~~~~R-g-----~~~lkdlve~a~~~~~t~lii~~ 151 (295)
.-++|.+--. .| .++..+|+-+..-.-..+-+.++| |.+ ...-| + ..+..+|.++|...|+++.+++.
T Consensus 14 ~~~~y~f~w~--qk~~i~~G~rGS~KSy~~alk~i~kl~~~~~~d~lvIR~v~nt~k~St~~~~~e~l~e~gv~~~f~~~ 91 (414)
T COG1783 14 IFEAYVFFWN--QKYFIAKGGRGSSKSYATALKNIEKLLSEPGIDVLVIREVENTHKQSTYALFKEALSELGVTKFFKIS 91 (414)
T ss_pred hhhhhhccch--heEEEEEccCCCchhHHHHHHHHHHHHcCCCCcEEEEEEeccccchhHHHHHHHHHHHhCccceeEEe
Confidence 3456764222 35 444455555554455556666666 777 32333 2 33477899999999999999887
Q ss_pred eecCCCCeEEEEeCCCCceEEEEEce
Q psy16424 152 EHRGIPDTLVICHLPYGPTAYFTMSD 177 (295)
Q Consensus 152 e~rg~p~~L~I~~lP~GPT~~F~I~n 177 (295)
.. ...+.+.+.|-.+.|+...
T Consensus 92 ~s-----~pe~i~~~~G~ri~F~G~d 112 (414)
T COG1783 92 KS-----SPEIILKDTGQRIIFKGLD 112 (414)
T ss_pred cC-----ChhheecccCcEEEEecCC
Confidence 63 3456778999888887654
No 22
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.73 E-value=2.4e+02 Score=28.43 Aligned_cols=76 Identities=9% Similarity=0.072 Sum_probs=60.0
Q ss_pred CCCeEEEEeCCCCC-HhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCC
Q psy16424 92 EDPKIMITTSRDPS-SRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYG 168 (295)
Q Consensus 92 ~~PKvLITtSr~pS-~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~G 168 (295)
..+.|+|.+...-. .....+++.||.--+++.....++. ++.-.+.|...|+..++++.+..-.-..+.|-++-.|
T Consensus 334 ~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~r~-~k~q~k~A~~~g~~~~viiGe~E~~~g~v~vKdl~t~ 410 (429)
T COG0124 334 TRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGRK-LKKQFKYADKLGARFAVILGEDELANGVVTVKDLATG 410 (429)
T ss_pred CCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEEecccc-HHHHHHHHHHCCCCEEEEEcchHHhcCCEEEeeCCCC
Confidence 35788998887765 7889999999998767765443332 8888999999999999999998655567777777766
No 23
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=31.79 E-value=2.4e+02 Score=22.14 Aligned_cols=68 Identities=15% Similarity=0.243 Sum_probs=41.6
Q ss_pred cCCCCCeEE-EEeC-CCCCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCC
Q psy16424 89 AGIEDPKIM-ITTS-RDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLP 166 (295)
Q Consensus 89 ~~~~~PKvL-ITtS-r~pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP 166 (295)
+..+.|=.+ +.+. ...|..+++|++|+..+=|.-......... ....+.+... +...++++.-+|
T Consensus 15 ~~l~~pV~l~~f~~~~~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~--~~~~gIrF~GiP 81 (94)
T cd02974 15 ERLENPVELVASLDDSEKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRP--GEDTGIRFAGIP 81 (94)
T ss_pred HhCCCCEEEEEEeCCCcchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecC--CCcccEEEEecC
Confidence 445556444 3343 367788999999999988765433222111 2345555432 245789999999
Q ss_pred CCc
Q psy16424 167 YGP 169 (295)
Q Consensus 167 ~GP 169 (295)
.|-
T Consensus 82 ~Gh 84 (94)
T cd02974 82 MGH 84 (94)
T ss_pred Cch
Confidence 884
No 24
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=30.01 E-value=1.2e+02 Score=29.04 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=34.5
Q ss_pred CeEEEEeCCCCCHhHHHHHHHHHhcCCCcEeec-cccchHHHHHHHHHhCCCCeEEEEEee
Q psy16424 94 PKIMITTSRDPSSRLKMFVKELRLIFPNSQRMN-RGNYEMKQLIHACRANDVTDFIVVHEH 153 (295)
Q Consensus 94 PKvLITtSr~pS~rl~~f~kdLr~l~Pns~~~~-Rg~~~lkdlve~a~~~~~t~lii~~e~ 153 (295)
-.++|||||.....+...++++..-.|+..... .+.+.+-+++. +.+.|+|+++
T Consensus 183 ~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La------~ad~i~VT~D 237 (311)
T PF06258_consen 183 GSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLA------AADAIVVTED 237 (311)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHH------hCCEEEEcCc
Confidence 378888888888877777777666555553343 34555555544 3466777664
No 25
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=29.43 E-value=1e+02 Score=26.58 Aligned_cols=9 Identities=44% Similarity=0.770 Sum_probs=5.4
Q ss_pred hhhHhhhHH
Q psy16424 3 RRQARLRRE 11 (295)
Q Consensus 3 r~~~r~rre 11 (295)
||+.|+||.
T Consensus 38 RkkLr~rr~ 46 (148)
T TIGR00985 38 RKKLRRRRK 46 (148)
T ss_pred HHHHHHHHH
Confidence 566666664
No 26
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=28.87 E-value=3.6e+02 Score=25.37 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=45.4
Q ss_pred CeEEEEeCCCCCHh---HHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeec-----C-CCCeEEEEe
Q psy16424 94 PKIMITTSRDPSSR---LKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHR-----G-IPDTLVICH 164 (295)
Q Consensus 94 PKvLITtSr~pS~r---l~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~r-----g-~p~~L~I~~ 164 (295)
..|||+ |-+++.- -.+++.+|=.-==.+........++.|+++.|...|++.+|++.+.. + .-..|.|-+
T Consensus 6 CDVLV~-S~~~~~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq~~~~~~~~~~~k~lKVK~ 84 (273)
T PF12745_consen 6 CDVLVC-SFGPSSLRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQKEKSSSSKSKYKPLKVKS 84 (273)
T ss_pred ceEEEE-eCChhHHHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEecccccccCCCccCceEEec
Confidence 457774 4454442 13334443222112334355667999999999999999999999853 1 112366666
Q ss_pred CCCCc
Q psy16424 165 LPYGP 169 (295)
Q Consensus 165 lP~GP 169 (295)
+-.+-
T Consensus 85 l~~~~ 89 (273)
T PF12745_consen 85 LEKKK 89 (273)
T ss_pred cCCCc
Confidence 66653
No 27
>KOG3112|consensus
Probab=26.44 E-value=56 Score=30.12 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCceEEEE
Q psy16424 132 MKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFT 174 (295)
Q Consensus 132 lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GPT~~F~ 174 (295)
-++|+++++..|+.++||++...+ ..+....+..||.+|.-
T Consensus 102 ~e~l~~~~kSSG~~~VIVLSss~~--~~~~~L~~srgP~~Y~l 142 (262)
T KOG3112|consen 102 QEELVELLKSSGARRVIVLSSSFG--FEKRVLEESRGPWAYRL 142 (262)
T ss_pred HHHHHHHHHhcCCceEEEEecchH--HHhhhhhhccCCeeEEc
Confidence 457899999999999999998754 34555666788986653
No 28
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=26.17 E-value=91 Score=31.58 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=34.0
Q ss_pred CcccHHhhcCCCCCeEEEEeCCCCCHhHHHHHHHHHhcCCCc
Q psy16424 81 HQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNS 122 (295)
Q Consensus 81 ~~ddey~~~~~~~PKvLITtSr~pS~rl~~f~kdLr~l~Pns 122 (295)
+.++||.=.|..-|||||+..-+ +....+++-|..++|..
T Consensus 25 ~~~~~~RDQGftRPkVLIL~P~R--~~A~~~V~~Li~l~~~~ 64 (442)
T PF06862_consen 25 DDEDEFRDQGFTRPKVLILLPFR--NSALRIVETLISLLPPG 64 (442)
T ss_pred cccchhhccCCCCceEEEEcccH--HHHHHHHHHHHHHcCcc
Confidence 46678888899999999998765 67899999999999874
No 29
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=24.90 E-value=2.5e+02 Score=27.18 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=45.7
Q ss_pred CeEEEEeCC-CCCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCC
Q psy16424 94 PKIMITTSR-DPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLP 166 (295)
Q Consensus 94 PKvLITtSr-~pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP 166 (295)
++|+|..-. ..-+...+.++.|+..-=.+.... ...++++-...|...|+..++++.+.......+.|-++-
T Consensus 323 ~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~~~-~~~~l~k~~~~a~~~g~~~~i~ig~~e~~~~~v~vrnl~ 395 (397)
T TIGR00442 323 PDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDL-GGRKLKKQLKYADKLGARFAVILGEDELANGTVTLKDLE 395 (397)
T ss_pred CcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEEeC-CCCCHHHHHHHHHHcCCCEEEEEChhHHhCCeEEEEeCC
Confidence 477777632 222345677777777531222222 345678899999999999999998864434455555543
No 30
>KOG3397|consensus
Probab=23.96 E-value=1.1e+02 Score=27.42 Aligned_cols=77 Identities=21% Similarity=0.361 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCCCcEeeccc-cchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCceEEEEEceeEeccccCCC
Q psy16424 109 KMFVKELRLIFPNSQRMNRG-NYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDL 187 (295)
Q Consensus 109 ~~f~kdLr~l~Pns~~~~Rg-~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GPT~~F~I~nv~l~~di~~~ 187 (295)
-.|+||-..++ |++ ..|. ...+..+-.-|...-++=++.-++.-..-..++++++++.|-+.| |+.|+..++..+.
T Consensus 22 PELlk~~~~LI-N~e-WPRS~TsR~hSL~~ScDs~P~sL~Ll~E~~~~VigH~rLS~i~n~~~al~-VEsVVV~k~~RG~ 98 (225)
T KOG3397|consen 22 PELLKESMTLI-NSE-WPRSDTSREHSLKKSCDSPPMSLLLLNEENDEVLGHSRLSHLPNRDHALW-VESVVVKKDQRGL 98 (225)
T ss_pred HHHHHHHHHHH-hcc-CCccchhhhhhhhcccCCCCeeeeeecccccceeeeeccccCCCCCceeE-EEEEEEehhhccc
Confidence 57889988888 665 3343 234555555666666554444333333456788999999998877 6888888888765
Q ss_pred C
Q psy16424 188 G 188 (295)
Q Consensus 188 g 188 (295)
|
T Consensus 99 G 99 (225)
T KOG3397|consen 99 G 99 (225)
T ss_pred c
Confidence 3
No 31
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=23.24 E-value=2.5e+02 Score=27.88 Aligned_cols=82 Identities=10% Similarity=0.018 Sum_probs=54.3
Q ss_pred CeEEEEeCC-CCCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCceEE
Q psy16424 94 PKIMITTSR-DPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAY 172 (295)
Q Consensus 94 PKvLITtSr-~pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GPT~~ 172 (295)
+.|+|+... .......++++.|+.-=-.+....+ ..++++-+..|...|+..++++.+..-....+.|-++-.|-...
T Consensus 326 ~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~veid~~-~~~l~k~~k~A~~~~~~~viiiG~~E~~~~~vtvk~l~~~~q~~ 404 (430)
T CHL00201 326 IDVYIATQGLKAQKKGWEIIQFLEKQNIKFELDLS-SSNFHKQIKQAGKKRAKACIILGDNEIMDNCITIKWLDEQVQEN 404 (430)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEEeeC-CCCHHHHHHHHHHcCCCEEEEEechHHhCCcEEEEECCCCCcEE
Confidence 447777632 2334567778888764222333233 34688899999999999999999875555678888877775544
Q ss_pred EEEc
Q psy16424 173 FTMS 176 (295)
Q Consensus 173 F~I~ 176 (295)
..+.
T Consensus 405 i~~~ 408 (430)
T CHL00201 405 AQYS 408 (430)
T ss_pred EcHH
Confidence 4333
No 32
>PLN02530 histidine-tRNA ligase
Probab=22.56 E-value=3.7e+02 Score=27.24 Aligned_cols=81 Identities=9% Similarity=0.012 Sum_probs=52.9
Q ss_pred CeEEEEeCC-CCCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCceEE
Q psy16424 94 PKIMITTSR-DPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAY 172 (295)
Q Consensus 94 PKvLITtSr-~pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GPT~~ 172 (295)
..++|+.-. ..-......++.|+.-==.+. +.-...++++.+..|...++..++++.+..-....+.|-++-.|-...
T Consensus 402 ~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~ve-vd~~~~~l~k~ik~A~k~g~~~iviiG~~E~~~~~V~vK~l~sgeq~~ 480 (487)
T PLN02530 402 VDDVVFALDEDLQGAAAGVASRLREKGRSVD-LVLEPKKLKWVFKHAERIGAKRLVLVGASEWERGMVRVKDLSSGEQTE 480 (487)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCeEE-EecCCCCHHHHHHHHHHCCCCEEEEEchhHHhCCeEEEEECCCCcceE
Confidence 357777632 222345677778876411222 222335689999999999999999999865444677788887776544
Q ss_pred EEE
Q psy16424 173 FTM 175 (295)
Q Consensus 173 F~I 175 (295)
+.+
T Consensus 481 v~~ 483 (487)
T PLN02530 481 VKL 483 (487)
T ss_pred ech
Confidence 443
No 33
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=20.25 E-value=2.8e+02 Score=23.69 Aligned_cols=49 Identities=10% Similarity=0.255 Sum_probs=34.0
Q ss_pred hHHHHHHHHHh-------cCCCcEeeccccc-----hHHHHHHHHHhCCCCeEEEEEeecC
Q psy16424 107 RLKMFVKELRL-------IFPNSQRMNRGNY-----EMKQLIHACRANDVTDFIVVHEHRG 155 (295)
Q Consensus 107 rl~~f~kdLr~-------l~Pns~~~~Rg~~-----~lkdlve~a~~~~~t~lii~~e~rg 155 (295)
.++.++.++.+ ++|...|..-... .|.+..+..+..|+.|+++++.+..
T Consensus 36 ~~~~l~~~lErqfKGRv~l~P~~~Y~~~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~D~~ 96 (142)
T PF10673_consen 36 FLRLLADELERQFKGRVLLFPAFTYLKEEDEEELVERLNDWCEELKESGFKHVFYLTSDSE 96 (142)
T ss_pred HHHHHHHHHHHhcCceEEecCCeeeecccchhHHHHHHHHHHHHHHhcCCcEEEEEecCcc
Confidence 44555555542 3588888764322 3677788889999999999998743
Done!