Your job contains 1 sequence.
>psy16424
MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE
DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP
NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM
RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF
RHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRILNSR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy16424
(295 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-040718-474 - symbol:imp4 "IMP4, U3 small nu... 1016 1.6e-102 1
UNIPROTKB|Q96G21 - symbol:IMP4 "U3 small nucleolar ribonu... 973 5.8e-98 1
MGI|MGI:106572 - symbol:Imp4 "IMP4, U3 small nucleolar ri... 973 5.8e-98 1
RGD|1308463 - symbol:Imp4 "IMP4, U3 small nucleolar ribon... 973 5.8e-98 1
UNIPROTKB|Q0VD01 - symbol:IMP4 "U3 small nucleolar ribonu... 960 1.4e-96 1
FB|FBgn0039274 - symbol:CG11920 species:7227 "Drosophila ... 894 1.4e-89 1
WB|WBGene00014083 - symbol:ZK795.3 species:6239 "Caenorha... 883 2.0e-88 1
DICTYBASE|DDB_G0302418 - symbol:imp4 "U3 small nucleolar ... 811 8.5e-81 1
TAIR|locus:2026689 - symbol:IMP4 "AT1G63780" species:3702... 775 5.5e-77 1
POMBASE|SPAC19A8.07c - symbol:SPAC19A8.07c "U3 snoRNP-ass... 756 5.7e-75 1
CGD|CAL0000877 - symbol:IMP4 species:5476 "Candida albica... 717 7.7e-71 1
SGD|S000005019 - symbol:IMP4 "Component of the SSU proces... 716 9.9e-71 1
GENEDB_PFALCIPARUM|PF08_0055 - symbol:PF08_0055 "u3 small... 508 6.9e-61 2
UNIPROTKB|Q8IB23 - symbol:PF08_0055 "U3 small nucleolar r... 508 6.9e-61 2
UNIPROTKB|G4ND46 - symbol:MGG_00977 "U3 small nucleolar r... 597 4.0e-58 1
UNIPROTKB|F1NRK2 - symbol:RPF1 "Uncharacterized protein" ... 393 1.7e-36 1
UNIPROTKB|Q8AVP1 - symbol:rpf1 "Ribosome production facto... 388 5.7e-36 1
TAIR|locus:2116992 - symbol:MEE49 "AT4G01560" species:370... 387 7.2e-36 1
WB|WBGene00009711 - symbol:F44G4.1 species:6239 "Caenorha... 379 5.1e-35 1
ZFIN|ZDB-GENE-040625-177 - symbol:rpf1 "ribosome producti... 374 1.7e-34 1
UNIPROTKB|E2RLN4 - symbol:RPF1 "Uncharacterized protein" ... 372 2.8e-34 1
UNIPROTKB|Q9H9Y2 - symbol:RPF1 "Ribosome production facto... 370 4.6e-34 1
UNIPROTKB|Q5R631 - symbol:RPF1 "Ribosome production facto... 370 4.6e-34 1
UNIPROTKB|A4FUG9 - symbol:BXDC5 "Uncharacterized protein"... 368 7.4e-34 1
RGD|1559755 - symbol:Rpf1 "ribosome production factor 1 h... 366 1.2e-33 1
UNIPROTKB|I3LN44 - symbol:RPF1 "Uncharacterized protein" ... 364 2.0e-33 1
MGI|MGI:1917535 - symbol:Rpf1 "ribosome production factor... 363 2.5e-33 1
FB|FBgn0032408 - symbol:CG6712 species:7227 "Drosophila m... 362 3.2e-33 1
ASPGD|ASPL0000059866 - symbol:AN0647 species:162425 "Emer... 351 4.7e-32 1
DICTYBASE|DDB_G0285829 - symbol:bxdc5 "brix domain-contai... 337 1.4e-30 1
POMBASE|SPAC4F8.04 - symbol:SPAC4F8.04 "Brix domain prote... 298 1.9e-26 1
SGD|S000001130 - symbol:RPF1 "Protein involved in assembl... 284 5.9e-25 1
ASPGD|ASPL0000077745 - symbol:AN8834 species:162425 "Emer... 213 6.3e-24 3
CGD|CAL0003496 - symbol:RPF1 species:5476 "Candida albica... 268 2.9e-23 1
UNIPROTKB|E2QZ99 - symbol:BRIX1 "Uncharacterized protein"... 124 3.6e-05 1
UNIPROTKB|Q3SZZ0 - symbol:BRIX1 "Ribosome biogenesis prot... 116 0.00030 1
UNIPROTKB|Q8TDN6 - symbol:BRIX1 "Ribosome biogenesis prot... 116 0.00030 1
UNIPROTKB|F1SND4 - symbol:BRIX1 "Uncharacterized protein"... 116 0.00030 1
RGD|1308508 - symbol:Brix1 "BRX1, biogenesis of ribosomes... 112 0.00086 1
MGI|MGI:1915082 - symbol:Brix1 "BRX1, biogenesis of ribos... 112 0.00086 1
>ZFIN|ZDB-GENE-040718-474 [details] [associations]
symbol:imp4 "IMP4, U3 small nucleolar
ribonucleoprotein, homolog (yeast)" species:7955 "Danio rerio"
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004154
ZFIN:ZDB-GENE-040718-474 GO:GO:0003676 GO:GO:0030529
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 CTD:92856 eggNOG:COG2136
GeneTree:ENSGT00550000074987 HOGENOM:HOG000172063
HOVERGEN:HBG056795 KO:K14561 OMA:SHFPHGP OrthoDB:EOG4JHCG8
EMBL:CU041374 EMBL:BC075765 IPI:IPI00488146 RefSeq:NP_001002719.1
UniGene:Dr.19345 STRING:Q6DI25 Ensembl:ENSDART00000076742
GeneID:436992 KEGG:dre:436992 InParanoid:Q6DI25 NextBio:20831411
Uniprot:Q6DI25
Length = 291
Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
Identities = 180/284 (63%), Positives = 236/284 (83%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
MLRR+ RLR+EYLYRK+ E++ R I+EKK +L+ +LD N+ +PT+++ +AL +Q+ L+++
Sbjct: 1 MLRREVRLRKEYLYRKAQEDRLRTIEEKKQKLKSALDENRLLPTEVRKEALEVQKLLEFD 60
Query: 61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
DEG E G +H DDEY+WAG+EDPKIM+TTSRDPSSRLKMF KE++L+FP
Sbjct: 61 DEGGE-----------GVSSHMDDEYKWAGVEDPKIMVTTSRDPSSRLKMFAKEMKLMFP 109
Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
+QRMNRGN+E+K L+HAC++N+VTD ++VHE RG PD LV+CHLP+GPTAYFTM +V+M
Sbjct: 110 GAQRMNRGNHEVKTLVHACKSNNVTDLVIVHETRGQPDGLVVCHLPFGPTAYFTMYNVVM 169
Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
RHD+PD+GTMSE YPHL+FHNF ++LG+RV +ILKYLFPVPKEDS+R++TFAN DDYISF
Sbjct: 170 RHDVPDIGTMSEAYPHLIFHNFTSRLGRRVSNILKYLFPVPKEDSRRVITFANTDDYISF 229
Query: 241 RHHNYKR-DGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
RHH YK+ D K++EL EVGPRF++KLY IKLGTL+ AD EW
Sbjct: 230 RHHTYKKTDHKNVELTEVGPRFEMKLYMIKLGTLENESTADVEW 273
>UNIPROTKB|Q96G21 [details] [associations]
symbol:IMP4 "U3 small nucleolar ribonucleoprotein protein
IMP4" species:9606 "Homo sapiens" [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0006364 "rRNA processing" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004154 GO:GO:0005730 GO:GO:0030529
GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AC132479 CTD:92856
eggNOG:COG2136 HOGENOM:HOG000172063 HOVERGEN:HBG056795 KO:K14561
OMA:SHFPHGP OrthoDB:EOG4JHCG8 EMBL:BC010042 IPI:IPI00181116
RefSeq:NP_219484.1 UniGene:Hs.91579 ProteinModelPortal:Q96G21
SMR:Q96G21 STRING:Q96G21 PhosphoSite:Q96G21 DMDM:73621060
PaxDb:Q96G21 PeptideAtlas:Q96G21 PRIDE:Q96G21 DNASU:92856
Ensembl:ENST00000259239 GeneID:92856 KEGG:hsa:92856 UCSC:uc002tra.1
GeneCards:GC02P131099 HGNC:HGNC:30856 MIM:612981 neXtProt:NX_Q96G21
PharmGKB:PA142671656 InParanoid:Q96G21 ChiTaRS:IMP4
GenomeRNAi:92856 NextBio:77904 ArrayExpress:Q96G21 Bgee:Q96G21
CleanEx:HS_IMP4 Genevestigator:Q96G21 GermOnline:ENSG00000136718
Uniprot:Q96G21
Length = 291
Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
Identities = 180/284 (63%), Positives = 228/284 (80%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
MLRR+ARLRREYLYRK+ EE QR+ QE+K+RLR++L+ N+ IPT+L+ +AL+LQ L+++
Sbjct: 1 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD 60
Query: 61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
D G E G +H DDEYRWAG+EDPK+MITTSRDPSSRLKMF KEL+L+FP
Sbjct: 61 DAGGE-----------GVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFP 109
Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
+QRMNRG +E+ L+ AC+AN VTD +VVHEHRG P L++ HLP+GPTAYFT+ +V+M
Sbjct: 110 GAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVM 169
Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
RHDIPDLGTMSE PHL+ H F ++LG+RV IL+YLFPVPK+DS R++TFAN DDYISF
Sbjct: 170 RHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISF 229
Query: 241 RHHNYKR-DGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
RHH YK+ D +++EL EVGPRF+LKLY I+LGTL+ AD EW
Sbjct: 230 RHHVYKKTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEW 273
>MGI|MGI:106572 [details] [associations]
symbol:Imp4 "IMP4, U3 small nucleolar ribonucleoprotein,
homolog (yeast)" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO;ISA] [GO:0006364 "rRNA
processing" evidence=TAS] [GO:0030519 "snoRNP binding"
evidence=ISA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR004154
MGI:MGI:106572 GO:GO:0005730 GO:GO:0003723 GO:GO:0030529
GO:GO:0030519 GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833 CTD:92856
eggNOG:COG2136 GeneTree:ENSGT00550000074987 HOGENOM:HOG000172063
HOVERGEN:HBG056795 KO:K14561 OMA:SHFPHGP OrthoDB:EOG4JHCG8
EMBL:AF334609 EMBL:AK010504 EMBL:AK013334 EMBL:AK084933
EMBL:AK151176 EMBL:AK152214 EMBL:AK166903 EMBL:BC037602
EMBL:BC069930 IPI:IPI00395166 RefSeq:NP_848716.2 UniGene:Mm.289667
ProteinModelPortal:Q8VHZ7 SMR:Q8VHZ7 STRING:Q8VHZ7
PhosphoSite:Q8VHZ7 PaxDb:Q8VHZ7 PRIDE:Q8VHZ7
Ensembl:ENSMUST00000027303 GeneID:27993 KEGG:mmu:27993
UCSC:uc007aor.2 InParanoid:Q8VHZ7 NextBio:306486 Bgee:Q8VHZ7
Genevestigator:Q8VHZ7 GermOnline:ENSMUSG00000026127 Uniprot:Q8VHZ7
Length = 291
Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
Identities = 179/284 (63%), Positives = 229/284 (80%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
MLRR+ARLRREYLYRK+ EE QR++QEKK+R++++L+ N+ IPT+L+ +AL+LQ L+++
Sbjct: 1 MLRREARLRREYLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFD 60
Query: 61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
D G E G +H DDEYRWAG+EDPK+MITTSRDPSSRLKMF KEL+L+FP
Sbjct: 61 DAGGE-----------GVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFP 109
Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
+QRMNRG +E+ L+ AC+AN VTD +VVHEHRG P L++ HLP+GPTAYFT+ +V+M
Sbjct: 110 GAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVM 169
Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
RHDIPDLGTMSE PHL+ H F ++LG+RV IL+YLFPVPK+DS R++TFAN DDYISF
Sbjct: 170 RHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISF 229
Query: 241 RHHNYKR-DGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
RHH YK+ D +++EL EVGPRF+LKLY I+LGTL+ AD EW
Sbjct: 230 RHHVYKKTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEW 273
>RGD|1308463 [details] [associations]
symbol:Imp4 "IMP4, U3 small nucleolar ribonucleoprotein, homolog
(yeast)" species:10116 "Rattus norvegicus" [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004154 RGD:1308463 GO:GO:0005730 GO:GO:0030529
GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 CTD:92856 eggNOG:COG2136
GeneTree:ENSGT00550000074987 HOGENOM:HOG000172063
HOVERGEN:HBG056795 KO:K14561 EMBL:BC087066 IPI:IPI00952233
RefSeq:NP_001009700.1 UniGene:Rn.6698 ProteinModelPortal:Q5PQR5
SMR:Q5PQR5 STRING:Q5PQR5 PRIDE:Q5PQR5 Ensembl:ENSRNOT00000066913
GeneID:316317 KEGG:rno:316317 UCSC:RGD:1308463 InParanoid:Q5PQR5
NextBio:670696 ArrayExpress:Q5PQR5 Genevestigator:Q5PQR5
Uniprot:Q5PQR5
Length = 291
Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
Identities = 179/284 (63%), Positives = 229/284 (80%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
MLRR+ARLRREYLYRK+ EE QR++QEKK+R++++L+ N+ IPT+L+ +AL+LQ L+++
Sbjct: 1 MLRREARLRREYLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFD 60
Query: 61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
D G E G +H DDEYRWAG+EDPK+MITTSRDPSSRLKMF KEL+L+FP
Sbjct: 61 DAGGE-----------GVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFP 109
Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
+QRMNRG +E+ L+ AC+AN VTD +VVHEHRG P L++ HLP+GPTAYFT+ +V+M
Sbjct: 110 GAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVM 169
Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
RHDIPDLGTMSE PHL+ H F ++LG+RV IL+YLFPVPK+DS R++TFAN DDYISF
Sbjct: 170 RHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISF 229
Query: 241 RHHNYKR-DGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
RHH YK+ D +++EL EVGPRF+LKLY I+LGTL+ AD EW
Sbjct: 230 RHHVYKKTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEW 273
>UNIPROTKB|Q0VD01 [details] [associations]
symbol:IMP4 "U3 small nucleolar ribonucleoprotein protein
IMP4" species:9913 "Bos taurus" [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] InterPro:IPR004154
GO:GO:0005730 GO:GO:0030529 GO:GO:0006364 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
EMBL:BC119909 IPI:IPI00703914 RefSeq:NP_001069085.1 UniGene:Bt.5241
ProteinModelPortal:Q0VD01 STRING:Q0VD01 PRIDE:Q0VD01
Ensembl:ENSBTAT00000004184 GeneID:513405 KEGG:bta:513405 CTD:92856
eggNOG:COG2136 GeneTree:ENSGT00550000074987 HOGENOM:HOG000172063
HOVERGEN:HBG056795 InParanoid:Q0VD01 KO:K14561 OMA:SHFPHGP
OrthoDB:EOG4JHCG8 NextBio:20870839 Uniprot:Q0VD01
Length = 291
Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
Identities = 176/284 (61%), Positives = 225/284 (79%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
MLRR+ARLRREYLYRK+ EE +R QE+KD++R++L+ N+ IPT+L+ +AL+LQ L+++
Sbjct: 1 MLRREARLRREYLYRKAREEAERTAQERKDKVRRALEENRLIPTELRREALALQGSLEFD 60
Query: 61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
D G E G H DDEYRWAG+EDPK+MITTSRDPSSRLKMF KEL+L+FP
Sbjct: 61 DAGGE-----------GVTNHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFP 109
Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
+QRMNRG +E+ L+ AC+AN VTD +VVHEHRG P L++ HLP+GPTAYFT+ +V+M
Sbjct: 110 GAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVM 169
Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
RHDIPDLGT SE PHL+ H F ++LG+RV IL+YLFPVPK+DS+R++TFAN DDYISF
Sbjct: 170 RHDIPDLGTASEAKPHLIMHGFSSRLGKRVSDILRYLFPVPKDDSRRVITFANQDDYISF 229
Query: 241 RHHNYKRDG-KDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
RHH YK+ +++EL EVGPRF+LKLY I+LGTL+ AD EW
Sbjct: 230 RHHVYKKTNHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEW 273
>FB|FBgn0039274 [details] [associations]
symbol:CG11920 species:7227 "Drosophila melanogaster"
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
InterPro:IPR004154 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 eggNOG:COG2136 EMBL:AY060848
ProteinModelPortal:Q95SD3 SMR:Q95SD3 IntAct:Q95SD3 STRING:Q95SD3
PaxDb:Q95SD3 PRIDE:Q95SD3 FlyBase:FBgn0039274 InParanoid:Q95SD3
OrthoDB:EOG4WM39C ArrayExpress:Q95SD3 Bgee:Q95SD3 Uniprot:Q95SD3
Length = 298
Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
Identities = 168/283 (59%), Positives = 222/283 (78%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
MLR+QAR RREYLY K+L E+ ++ Q+ ++ + KS++ NK I + ++L+ + L +
Sbjct: 1 MLRKQARQRREYLYNKALTERLKSKQKIQETVVKSINENKAIGSKNVKKSLTAYKSLKYA 60
Query: 61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
DEG + T +DEY +AG EDPKIM+TTS +PSSRLKMF+KELRLI P
Sbjct: 61 DEG------VDDRTV-------NDEYHYAGCEDPKIMLTTSHNPSSRLKMFMKELRLIIP 107
Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
N+Q+MNRGNY++ L+HACRAN+VTDF++VHEHRGI D+LV+CHLPYGPTA+F +SDV+M
Sbjct: 108 NAQQMNRGNYQLTTLMHACRANNVTDFLIVHEHRGILDSLVVCHLPYGPTAFFNISDVVM 167
Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
RHDIPD+G MSEQ PHL+F+NFKT +G R + ILK+LFPVPKE+S+R+++F NH+D I F
Sbjct: 168 RHDIPDIGHMSEQKPHLIFNNFKTPIGLRTVKILKHLFPVPKENSQRVMSFLNHNDSIIF 227
Query: 241 RHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
RHH YK K++EL EVGPRF LKLY+IKLGTL+ ++AADTEW
Sbjct: 228 RHHQYKYVNKELELTEVGPRFSLKLYQIKLGTLENIKAADTEW 270
>WB|WBGene00014083 [details] [associations]
symbol:ZK795.3 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR004154 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000003
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 eggNOG:COG2136 GeneTree:ENSGT00550000074987
HOGENOM:HOG000172063 KO:K14561 OMA:SHFPHGP EMBL:Z83246 PIR:T27998
RefSeq:NP_502404.1 ProteinModelPortal:O62518 SMR:O62518
IntAct:O62518 STRING:O62518 PaxDb:O62518 EnsemblMetazoa:ZK795.3.1
EnsemblMetazoa:ZK795.3.2 GeneID:178207 KEGG:cel:CELE_ZK795.3
UCSC:ZK795.3 CTD:178207 WormBase:ZK795.3 InParanoid:O62518
NextBio:900162 Uniprot:O62518
Length = 292
Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
Identities = 164/287 (57%), Positives = 221/287 (77%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
M+RR+ RLRRE+++RKSLEEKQ++++EK++++R +L+ N KI +L+ A+ L + DW
Sbjct: 1 MIRRENRLRREFIFRKSLEEKQKSLEEKREKIRNALENNTKIDYNLRKDAIELAKGSDW- 59
Query: 61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
GG D EYRWAG +DPKI+ITTSRDPSSRLKMF KE++LIFP
Sbjct: 60 ---------------GGQQYETDSEYRWAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFP 104
Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
N+QR+NRG+Y++KQ++ A +A D TD I+ E RG PD +++CHLP+GPTA+F+M++V+M
Sbjct: 105 NAQRINRGHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVM 164
Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
RHDIP+ GTMSEQYPHL+F N ++LG R +ILK+LFPVPK DSKRI+TF+N +DYISF
Sbjct: 165 RHDIPNCGTMSEQYPHLIFDNLNSKLGHRFTTILKHLFPVPKPDSKRIITFSNSEDYISF 224
Query: 241 RHHNYK--RDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285
RHH YK DG ++EL E GPRF+LK Y+IKLGTL+T+ AA+ EW L
Sbjct: 225 RHHVYKTENDG-EVELTEAGPRFELKPYQIKLGTLETLAAAEDEWVL 270
>DICTYBASE|DDB_G0302418 [details] [associations]
symbol:imp4 "U3 small nucleolar ribonucleoprotein
protein" species:44689 "Dictyostelium discoideum" [GO:0034457
"Mpp10 complex" evidence=ISS] [GO:0030515 "snoRNA binding"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004154
dictyBase:DDB_G0302418 GenomeReviews:CM000152_GR GO:GO:0030515
EMBL:AAFI02000042 GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833 GO:GO:0034457
KO:K14561 OMA:SHFPHGP RefSeq:XP_002649153.1
EnsemblProtists:DDB0302419 GeneID:8623193 KEGG:ddi:DDB_G0302418
ProtClustDB:CLSZ2735584 Uniprot:C7G018
Length = 286
Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
Identities = 161/285 (56%), Positives = 209/285 (73%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
MLRR ARLR+EYLYRK+LE + EKK R++K+LD K IPT+L +D+E
Sbjct: 1 MLRRNARLRQEYLYRKNLEGADKEDYEKKRRIKKALDEGKPIPTEL----------VDFE 50
Query: 61 -DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIF 119
E+ + + G DDEY AGI+DPK+++TTSR+PSSRL F KELR++F
Sbjct: 51 FKHRDEMKLD---KLDGNRPKSIDDEYARAGIQDPKVLVTTSREPSSRLIQFTKELRMLF 107
Query: 120 PNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVI 179
PNSQ+MNRG + +K+L+ ACRANDVTD ++ HEHRG P LVI HLPYGPTAYF + + +
Sbjct: 108 PNSQKMNRGAHVVKELVDACRANDVTDLVIAHEHRGEPVGLVISHLPYGPTAYFEIKNCV 167
Query: 180 MRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYIS 239
M HDI + S +PHL+FHNF T LG+R +ILKYLFPVPK+DS+R+VTF+N +D+IS
Sbjct: 168 MIHDIDEATPPSLAFPHLIFHNFTTPLGERTENILKYLFPVPKDDSRRVVTFSNDNDFIS 227
Query: 240 FRHHNYKRDG-KDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
FRHH Y++DG K++ LKE+GPRF+LKLY+I+LGTLD EA D EW
Sbjct: 228 FRHHIYEKDGYKNVILKEIGPRFELKLYKIQLGTLDQDEA-DLEW 271
>TAIR|locus:2026689 [details] [associations]
symbol:IMP4 "AT1G63780" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0005730 "nucleolus" evidence=TAS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=TAS] [GO:0006364 "rRNA processing" evidence=RCA;TAS]
[GO:0015030 "Cajal body" evidence=TAS] [GO:0016363 "nuclear matrix"
evidence=IDA] [GO:0000478 "endonucleolytic cleavage involved in
rRNA processing" evidence=RCA] [GO:0001510 "RNA methylation"
evidence=RCA] InterPro:IPR004154 EMBL:CP002684 GO:GO:0005730
GO:GO:0003676 GO:GO:0015030 GO:GO:0016363 GO:GO:0006364
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 GO:GO:0005732 EMBL:AC011622 HOGENOM:HOG000172063
KO:K14561 OMA:SHFPHGP EMBL:AC010852 EMBL:AY093002 EMBL:AY114605
EMBL:AY088147 IPI:IPI00528532 PIR:H96662 RefSeq:NP_176564.1
UniGene:At.43038 ProteinModelPortal:Q9S826 SMR:Q9S826 STRING:Q9S826
PRIDE:Q9S826 EnsemblPlants:AT1G63780.1 GeneID:842682
KEGG:ath:AT1G63780 TAIR:At1g63780 InParanoid:Q9S826
PhylomeDB:Q9S826 ProtClustDB:CLSN2682600 ArrayExpress:Q9S826
Genevestigator:Q9S826 Uniprot:Q9S826
Length = 294
Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
Identities = 153/291 (52%), Positives = 210/291 (72%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
M RR RL++EY+YRKSLE +R + E+K +R++L K IPT+L+N L++++D E
Sbjct: 1 MQRRLVRLKKEYIYRKSLEGDERKVYEQKRLIREALQEGKPIPTELRNVEAKLRQEIDLE 60
Query: 61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
D+ + S H DDEY A DPKI++TTSR+PS+ L F KEL+ +FP
Sbjct: 61 DQNTAVPRS-----------HIDDEYANATEADPKILLTTSRNPSAPLIRFTKELKFVFP 109
Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
NSQR+NRG+ + ++I R++D TD I+VHEHRG+PD L+I HLP+GPTAYF + +V+
Sbjct: 110 NSQRINRGSQVISEIIETARSHDFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVT 169
Query: 181 RHDIPD---LGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDY 237
RHDI D +G M EQYPHL+F+NF TQ+GQRV +ILK++FP PK D+KRIVTF+N DY
Sbjct: 170 RHDISDKKSIGKMPEQYPHLIFNNFTTQMGQRVGNILKHIFPAPKLDAKRIVTFSNQSDY 229
Query: 238 ISFRHHNY-KRDG--KDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285
ISFR+H Y K +G K IELKE+GPRF+L+LY++KLGT++ EA + EW +
Sbjct: 230 ISFRNHVYDKGEGGPKSIELKEIGPRFELRLYQVKLGTVEQNEA-EIEWVI 279
>POMBASE|SPAC19A8.07c [details] [associations]
symbol:SPAC19A8.07c "U3 snoRNP-associated protein Imp4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0032040 "small-subunit processome" evidence=ISO]
InterPro:IPR004154 PomBase:SPAC19A8.07c EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0003723 GO:GO:0006364
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 GO:GO:0032040 eggNOG:COG2136 HOGENOM:HOG000172063
KO:K14561 OMA:SHFPHGP PIR:T37954 RefSeq:NP_593785.1 STRING:O13823
EnsemblFungi:SPAC19A8.07c.1 GeneID:2542446 KEGG:spo:SPAC19A8.07c
OrthoDB:EOG4897WM NextBio:20803502 Uniprot:O13823
Length = 289
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 148/287 (51%), Positives = 203/287 (70%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
MLRR R RR+++Y+++ E ++ + EK+ LRK+L+GNK++ DL+ + LQ+ ++
Sbjct: 1 MLRRAVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQEDS-QLQKDYKYD 59
Query: 61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
+ A TET+ DDEY G +PK+++TTSR+PSSRL F KE+RL+ P
Sbjct: 60 ESR---ATQEETETN------LDDEYHRLGEREPKVLVTTSREPSSRLAQFAKEVRLLIP 110
Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
NS R+NRGN + L+ A RAND+TD +++HEHRGIPD LVI HLPYGPT F++ +V++
Sbjct: 111 NSYRLNRGNIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVL 170
Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYIS 239
RHDIP+ GTMSE YPHL+F N ++LG+RV + L LFP PK+ + R+VTFAN DDYIS
Sbjct: 171 RHDIPNTGTMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYIS 230
Query: 240 FRHHNYKRDG-KDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285
FRHH Y + G K I L E GPRF++KL+EI LGT+D V+A D EW L
Sbjct: 231 FRHHIYAKTGPKQIILSEAGPRFEMKLFEITLGTVDMVDA-DVEWKL 276
>CGD|CAL0000877 [details] [associations]
symbol:IMP4 species:5476 "Candida albicans" [GO:0032040
"small-subunit processome" evidence=IEA] [GO:0034457 "Mpp10
complex" evidence=IEA] [GO:0030515 "snoRNA binding" evidence=IEA]
[GO:0042134 "rRNA primary transcript binding" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
InterPro:IPR004154 CGD:CAL0000877 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AACQ01000109
EMBL:AACQ01000108 eggNOG:COG2136 HOGENOM:HOG000172063 KO:K14561
RefSeq:XP_714190.1 RefSeq:XP_714230.1 STRING:Q59X74 GeneID:3644138
GeneID:3644172 KEGG:cal:CaO19.603 KEGG:cal:CaO19.8236
Uniprot:Q59X74
Length = 283
Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
Identities = 139/297 (46%), Positives = 202/297 (68%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
M+R+QAR RREYLYRK+L+ ++ ++ EK+ +L+ +L K + +L LQR +
Sbjct: 1 MIRKQARERREYLYRKALQLQESSLTEKRQQLKAALASGKSLSKELAEDE-KLQRDFIY- 58
Query: 61 DEGPELAVSIGTETSGGGLTHQDDEY-RWAGIEDPKIMITTSRDPSSRLKMFVKELRLIF 119
DE ++ + DDEY R +GI DPK++ITTSRDPS +L F KE++L+F
Sbjct: 59 DESEQIEI--------------DDEYSRLSGISDPKVVITTSRDPSVKLLQFSKEIKLMF 104
Query: 120 PNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVI 179
PNS ++NRGNY + L+ C V+D I++HEHRG+P +L + H P+GPTA FT+ +V
Sbjct: 105 PNSLKLNRGNYIISDLVSTCNRVQVSDMILLHEHRGVPSSLTVSHFPHGPTAIFTLHNVK 164
Query: 180 MRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVP-KEDSKRIVTFANHDDYI 238
+RHD+P+LG +SE YPHL+F NF++ LG+RV+ IL++LFP K+DS R++TF N+DDYI
Sbjct: 165 LRHDLPNLGNVSESYPHLIFENFQSDLGKRVVKILQHLFPPGVKKDSSRVITFVNNDDYI 224
Query: 239 SFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRILNSR 295
S RHH Y + +EL E+GPRF+++LYEI+LG D +A D EW + R R N +
Sbjct: 225 SVRHHVYVKTKDSVELSEIGPRFEMRLYEIRLGLPDNKDA-DVEWQMRRFIRTANRK 280
>SGD|S000005019 [details] [associations]
symbol:IMP4 "Component of the SSU processome" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0032040 "small-subunit processome" evidence=IDA]
[GO:0034457 "Mpp10 complex" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;TAS] [GO:0042134 "rRNA primary transcript
binding" evidence=IPI] [GO:0043047 "single-stranded telomeric DNA
binding" evidence=IDA] [GO:0030515 "snoRNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] SGD:S000005019
InterPro:IPR004154 GO:GO:0030515 EMBL:BK006947 EMBL:X86470
GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GO:GO:0042134 GO:GO:0032040
GO:GO:0043047 RefSeq:NP_014331.3 GeneID:855656 KEGG:sce:YNL068C
GO:GO:0034457 eggNOG:COG2136 GeneTree:ENSGT00550000074987
HOGENOM:HOG000172063 KO:K14561 OMA:SHFPHGP OrthoDB:EOG4897WM
EMBL:Z71351 PIR:S53904 RefSeq:NP_014324.3 ProteinModelPortal:P53941
SMR:P53941 DIP:DIP-4362N IntAct:P53941 MINT:MINT-497481
STRING:P53941 PaxDb:P53941 PeptideAtlas:P53941 EnsemblFungi:YNL075W
GeneID:855649 KEGG:sce:YNL075W CYGD:YNL075w NextBio:979893
Genevestigator:P53941 GermOnline:YNL075W Uniprot:P53941
Length = 290
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 142/297 (47%), Positives = 201/297 (67%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
MLRRQAR RREYLYRK+ E + +Q+K+ ++++L K +P +L SLQ+ ++
Sbjct: 1 MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDE-SLQKDFRYD 59
Query: 61 DEGPELAVSIGTETSGGGLTHQDDEYR-WAGIEDPKIMITTSRDPSSRLKMFVKELRLIF 119
S+ L DDEY +GI DP+I++TTSRDPS+RL F KE++L+F
Sbjct: 60 Q-------SLKESEEADDL-QVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLF 111
Query: 120 PNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVI 179
PN+ R+NRGNY M L+ AC+ + TD +V+HEHRG+P +L I H P+GPTA F++ +V+
Sbjct: 112 PNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVV 171
Query: 180 MRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYI 238
MRHDI + G SE PHL+F NF T LG+RV+ ILK+LF PK+DS+R++TFAN D+I
Sbjct: 172 MRHDIINAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFI 231
Query: 239 SFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRILNSR 295
S R H Y R + +E+ EVGPRF+++L+E++LGTL+ +A D EW L R R N +
Sbjct: 232 SVRQHVYVRTREGVEIAEVGPRFEMRLFELRLGTLENKDA-DVEWQLRRFIRTANKK 287
>GENEDB_PFALCIPARUM|PF08_0055 [details] [associations]
symbol:PF08_0055 "u3 small nucleolar
ribonucleoprotein protein" species:5833 "Plasmodium falciparum"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR004154 GO:GO:0003676 GO:GO:0006396 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GO:GO:0005732 EMBL:AL844507 HOGENOM:HOG000172063 KO:K14561
RefSeq:XP_001349337.1 ProteinModelPortal:Q8IB23 IntAct:Q8IB23
MINT:MINT-1550495 EnsemblProtists:PF08_0055:mRNA GeneID:2655255
KEGG:pfa:PF08_0055 EuPathDB:PlasmoDB:PF3D7_0818800 OMA:KRIMNIF
ProtClustDB:CLSZ2433740 Uniprot:Q8IB23
Length = 362
Score = 508 (183.9 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 102/229 (44%), Positives = 155/229 (67%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
MLRR RLR+EYLY K +E++++ EK +++S D NKKI DLK++ L++ ++
Sbjct: 1 MLRRNIRLRKEYLYLKKVEDEKKKYAEKIKSIKESYDKNKKIRGDLKDEESELRKNMNLY 60
Query: 61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
DE S + DDEY + G+E+P+++ITTSR+PSS L+ F KEL+LI P
Sbjct: 61 DEK-----SFDRKV--------DDEYFFCGLENPRVLITTSRNPSSTLENFAKELKLIIP 107
Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
NS+++NRG+Y +K +++ R N++TD I++HE++GIP L+ICHLP+GPT + T+ D M
Sbjct: 108 NSEKINRGSYFIKDILNFARKNNITDVIILHEYKGIPRNLIICHLPFGPTLFCTIKDCKM 167
Query: 181 RHDIPD-LGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFP-VPKEDSKR 227
R + + + +S PHL+FHNF + LG+R+M+I KYLFP V +KR
Sbjct: 168 RCEFNEKIDNISLCTPHLIFHNFHSDLGKRIMNIFKYLFPPVTMRTNKR 216
Score = 133 (51.9 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 215 KYLFPVPKEDSKRIVTFANHDDYISFRHHNY-KRDGKDIELKEVGPRFQLKLYEIKLGTL 273
+YL + K ++ R++ F N +D I FRH+N+ K +I LKE+GPRF +Y+I TL
Sbjct: 281 EYL-NLQKYENNRVIVFFNKNDIIYFRHYNWEKNQTNEIVLKEIGPRFSFVVYKINKETL 339
Query: 274 DTVEAADTEWALFRMGRILNSR 295
D++ D E+ ++R +NSR
Sbjct: 340 DSLNE-DYEY-IYRP--FMNSR 357
>UNIPROTKB|Q8IB23 [details] [associations]
symbol:PF08_0055 "U3 small nucleolar ribonucleoprotein
protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR004154 GO:GO:0003676 GO:GO:0006396 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GO:GO:0005732 EMBL:AL844507 HOGENOM:HOG000172063 KO:K14561
RefSeq:XP_001349337.1 ProteinModelPortal:Q8IB23 IntAct:Q8IB23
MINT:MINT-1550495 EnsemblProtists:PF08_0055:mRNA GeneID:2655255
KEGG:pfa:PF08_0055 EuPathDB:PlasmoDB:PF3D7_0818800 OMA:KRIMNIF
ProtClustDB:CLSZ2433740 Uniprot:Q8IB23
Length = 362
Score = 508 (183.9 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 102/229 (44%), Positives = 155/229 (67%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
MLRR RLR+EYLY K +E++++ EK +++S D NKKI DLK++ L++ ++
Sbjct: 1 MLRRNIRLRKEYLYLKKVEDEKKKYAEKIKSIKESYDKNKKIRGDLKDEESELRKNMNLY 60
Query: 61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
DE S + DDEY + G+E+P+++ITTSR+PSS L+ F KEL+LI P
Sbjct: 61 DEK-----SFDRKV--------DDEYFFCGLENPRVLITTSRNPSSTLENFAKELKLIIP 107
Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
NS+++NRG+Y +K +++ R N++TD I++HE++GIP L+ICHLP+GPT + T+ D M
Sbjct: 108 NSEKINRGSYFIKDILNFARKNNITDVIILHEYKGIPRNLIICHLPFGPTLFCTIKDCKM 167
Query: 181 RHDIPD-LGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFP-VPKEDSKR 227
R + + + +S PHL+FHNF + LG+R+M+I KYLFP V +KR
Sbjct: 168 RCEFNEKIDNISLCTPHLIFHNFHSDLGKRIMNIFKYLFPPVTMRTNKR 216
Score = 133 (51.9 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 215 KYLFPVPKEDSKRIVTFANHDDYISFRHHNY-KRDGKDIELKEVGPRFQLKLYEIKLGTL 273
+YL + K ++ R++ F N +D I FRH+N+ K +I LKE+GPRF +Y+I TL
Sbjct: 281 EYL-NLQKYENNRVIVFFNKNDIIYFRHYNWEKNQTNEIVLKEIGPRFSFVVYKINKETL 339
Query: 274 DTVEAADTEWALFRMGRILNSR 295
D++ D E+ ++R +NSR
Sbjct: 340 DSLNE-DYEY-IYRP--FMNSR 357
>UNIPROTKB|G4ND46 [details] [associations]
symbol:MGG_00977 "U3 small nucleolar ribonucleoprotein
IMP4" species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR004154 EMBL:CM001235 GO:GO:0003676
GO:GO:0030529 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 KO:K14561 RefSeq:XP_003717972.1
ProteinModelPortal:G4ND46 EnsemblFungi:MGG_00977T0 GeneID:2674209
KEGG:mgr:MGG_00977 Uniprot:G4ND46
Length = 295
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 130/302 (43%), Positives = 189/302 (62%)
Query: 1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
M+R+QAR RR+YLYRK K I EKK ++R SL + + D+ N + + D+
Sbjct: 1 MIRKQARERRDYLYRKVAILKDAEINEKKAKMRASLAQGRPLEKDIANDE---KLRADYH 57
Query: 61 -DEGPELAVSIGTETSGGGLTHQDDEY-RWAGIEDPKIMITTSRDPSSRLKMFVKELRLI 118
DE I E DDEY + +G+ DP++M+TTSRDPS+RL F KE+RL+
Sbjct: 58 YDES-----RIDRED-----LDLDDEYAQLSGLVDPRVMVTTSRDPSARLAAFAKEIRLL 107
Query: 119 FPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDV 178
P + R+NRGN + +L+ + +A ++D +++HE RG P L I H+P+GPT F++ +V
Sbjct: 108 LPTAIRLNRGNLILPELVRSVQAAGLSDIVLLHERRGTPTALTISHMPHGPTVSFSLHNV 167
Query: 179 IMRHDIPDL--GTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKED-------SKRIV 229
++RHDIP GT+SE YPHLVF F ++LGQR++ +LK+LFP P+E S R++
Sbjct: 168 LLRHDIPGSVRGTVSEAYPHLVFDGFTSKLGQRIVKVLKHLFP-PREPITNKAKMSNRVI 226
Query: 230 TFANHDDYISFRHHNYKRDGKD-IELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRM 288
TF N DD I RHH + R G + +EL EVGPR +K++EI+ GTL+ + D EW L +
Sbjct: 227 TFKNIDDVIEVRHHVFVRTGHESVELAEVGPRMSMKVFEIRGGTLENKDG-DVEWHLSQY 285
Query: 289 GR 290
R
Sbjct: 286 TR 287
>UNIPROTKB|F1NRK2 [details] [associations]
symbol:RPF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR004154 GO:GO:0005730
GO:GO:0003723 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GeneTree:ENSGT00550000074691
OMA:IENQRVY EMBL:AADN02012801 IPI:IPI00584227
Ensembl:ENSGALT00000014300 Uniprot:F1NRK2
Length = 347
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 100/284 (35%), Positives = 155/284 (54%)
Query: 9 RREYLYR--KSLEEKQR-AIQEKKDRLRKSLDGN---KKIPTDLKNQALSLQRKLDWEDE 62
RR +++ K + K++ A+++K+ + R++L K IP ++NQ + + +D DE
Sbjct: 60 RRHFMFLRWKQQQRKEKLALKKKRRKEREALGDKAPPKAIPKTIENQRIYDETTVDPNDE 119
Query: 63 GPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNS 122
E+A I T+ Q PKI+ITTS P R F ++L + PNS
Sbjct: 120 --EVAFDIATDEFAPYFNRQTV---------PKILITTSDRPRGRTVRFCEQLSTVIPNS 168
Query: 123 QRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRH 182
R +K++I C A D TD IV++E R IP+ LV+ HLP GPTA+F MS V +R
Sbjct: 169 HVYYRRGLALKRIIPQCIARDFTDLIVINEDRKIPNGLVLSHLPDGPTAHFRMSSVRLRK 228
Query: 183 DIPDLGTM-SEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYISF 240
+I G +E P ++ +NF T+LG + + LFP P+ +++ TF N DYI F
Sbjct: 229 EIKRKGKEPTEHVPEVILNNFTTRLGHSIGRMFASLFPHDPQFIGRQVATFHNQRDYIFF 288
Query: 241 RHHNYK-RDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
R H Y + K + ++E+GPRF LKL ++ GT D+ + + EW
Sbjct: 289 RFHRYIFKSEKKVGIQELGPRFTLKLRSLQKGTFDS-KFGEYEW 331
>UNIPROTKB|Q8AVP1 [details] [associations]
symbol:rpf1 "Ribosome production factor 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] InterPro:IPR004154
GO:GO:0005730 GO:GO:0003723 GO:GO:0019843 GO:GO:0006364
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 KO:K14846 HOVERGEN:HBG083559 EMBL:BC041557
RefSeq:NP_001080272.1 UniGene:Xl.1785 ProteinModelPortal:Q8AVP1
GeneID:379964 KEGG:xla:379964 CTD:379964 Uniprot:Q8AVP1
Length = 343
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 94/284 (33%), Positives = 158/284 (55%)
Query: 9 RREYLYRKSLEEKQRA---IQEKKDRLRKSLDGN---KKIPTDLKNQALSLQRKLDWEDE 62
RR++++ K +EK++ +++K+ + R++L K +P ++NQ + + +D DE
Sbjct: 56 RRQFMFIKLKQEKRKEKLILRKKRKKEREALGDKAPPKPVPKTIENQRVYDETTVDPADE 115
Query: 63 GPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNS 122
E+A+ T+ Q PKI+ITTS P R F ++L I PNS
Sbjct: 116 --EVALDEATDEFAPYFNKQTT---------PKILITTSDRPRGRSVRFTEQLSSIIPNS 164
Query: 123 QRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRH 182
R +K++I C + D TD +V++E R +P+ LV+CHLP GPTA+F +S+V +R
Sbjct: 165 DVYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVRLRK 224
Query: 183 DIPDLGTM-SEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYISF 240
++ G +E P ++ +NF T+LG + + L+P P +++ TF N DYI F
Sbjct: 225 EMKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFVGRQVATFHNQRDYIFF 284
Query: 241 RHHNYK-RDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
R+H Y + K + ++E+GPRF LKL ++ GT D+ + + EW
Sbjct: 285 RYHRYLFKSEKKVGIQELGPRFTLKLRSLQKGTFDS-KYGEYEW 327
>TAIR|locus:2116992 [details] [associations]
symbol:MEE49 "AT4G01560" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA;IMP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0009845 "seed germination" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0009933
"meristem structural organization" evidence=RCA] [GO:0010162 "seed
dormancy process" evidence=RCA] [GO:0010182 "sugar mediated
signaling pathway" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0016567 "protein ubiquitination" evidence=RCA] [GO:0019915
"lipid storage" evidence=RCA] [GO:0048366 "leaf development"
evidence=RCA] [GO:0048825 "cotyledon development" evidence=RCA]
[GO:0050826 "response to freezing" evidence=RCA] [GO:0051301 "cell
division" evidence=RCA] InterPro:IPR004154 GO:GO:0005829
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009793 EMBL:AL161492
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 KO:K14846 HOGENOM:HOG000172062 OMA:IENQRVY
EMBL:AY050341 EMBL:AY086463 EMBL:BT020609 IPI:IPI00523270
PIR:C85020 RefSeq:NP_567213.1 UniGene:At.3828
ProteinModelPortal:Q9M125 STRING:Q9M125 PRIDE:Q9M125
EnsemblPlants:AT4G01560.1 GeneID:828136 KEGG:ath:AT4G01560
TAIR:At4g01560 InParanoid:Q9M125 PhylomeDB:Q9M125
ProtClustDB:CLSN2689273 ArrayExpress:Q9M125 Genevestigator:Q9M125
Uniprot:Q9M125
Length = 343
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 106/304 (34%), Positives = 159/304 (52%)
Query: 9 RREYLYRKSLEEK-QRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELA 67
+R + ++ K +R+ K + K L+ KKI + + + +R L+ +E P+
Sbjct: 30 KRNVILPSMIKNKDKRSKVYAKQKHEKKLEKQKKI----RARDAAEKRALELGEEPPQKM 85
Query: 68 V--SI-GTETSGGGLTHQDDEYRWAGIE-D-----------PKIMITTSRDPSSRLKMFV 112
+ +I T S + DDE +A I+ D PK+++TT R S+R +
Sbjct: 86 IPKTIENTRESDETVCRPDDEELFADIDADEFNPVLRREIAPKVLLTTCRFNSTRGPALI 145
Query: 113 KELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAY 172
EL + PNS RG Y++K+++ D T IVVH +R PD L+I LP GPTA+
Sbjct: 146 SELLSVIPNSHYQKRGTYDLKKIVEYATKKDFTSLIVVHTNRREPDALLIIGLPNGPTAH 205
Query: 173 FTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTF 231
F +S++++R DI + G + P LV +NF T+LG RV + LFP P +R+VTF
Sbjct: 206 FKLSNLVLRKDIKNHGNPTSHQPELVLNNFTTRLGNRVGRFFQSLFPPDPNFRGRRVVTF 265
Query: 232 ANHDDYISFRHHNY-------KRD-GKDIELK----EVGPRFQLKLYEIKLGTLDTVEAA 279
N D+I FRHH Y K D GK+ +K E GPRF LKL ++ GT DT +
Sbjct: 266 HNQRDFIFFRHHRYIFETKESKSDKGKEETIKPRLQECGPRFTLKLVTLQHGTFDT-KGG 324
Query: 280 DTEW 283
+ EW
Sbjct: 325 EFEW 328
>WB|WBGene00009711 [details] [associations]
symbol:F44G4.1 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] InterPro:IPR004154 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
eggNOG:COG2136 EMBL:Z49910 GeneTree:ENSGT00550000074691 KO:K14846
HOGENOM:HOG000172062 PIR:B88252 PIR:T19409 RefSeq:NP_495918.1
ProteinModelPortal:P54073 STRING:P54073 PaxDb:P54073
EnsemblMetazoa:F44G4.1 GeneID:174434 KEGG:cel:CELE_F44G4.1
UCSC:F44G4.1 CTD:174434 WormBase:F44G4.1 InParanoid:P54073
OMA:RDEDATM NextBio:884024 Uniprot:P54073
Length = 384
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 91/278 (32%), Positives = 142/278 (51%)
Query: 15 RKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAVSIGTET 74
+++L + +RA Q ++ ++R L + P + + R+ D A + E
Sbjct: 106 KRALRKDKRARQGERAQIRDEL--GESAPQKEVPKTIESMREYD--------ATMVNEED 155
Query: 75 SGGGLTHQDDEYR-WAGIE-DPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEM 132
+DE+ + E PK+MIT + F EL+ PNS+ R N +
Sbjct: 156 DEVEHDEANDEFAPYFNRETSPKVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVLL 215
Query: 133 KQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMSE 192
K +I + + TD +VVHE R P+ ++ CHLP GPTAYF ++ + D+ G +
Sbjct: 216 KTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKKFGESTS 275
Query: 193 QYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYISFRHHNY--KRDG 249
+P ++ +NF T+LG + +L LFP PK +R+VTF N DYI FRHH Y K++G
Sbjct: 276 HFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVVTFHNQRDYIFFRHHRYEFKKEG 335
Query: 250 KDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFR 287
L E+GPRF L+L ++ GT D + + EW L R
Sbjct: 336 SKAALLELGPRFTLRLKWLQKGTFDA-KWGEFEWVLKR 372
>ZFIN|ZDB-GENE-040625-177 [details] [associations]
symbol:rpf1 "ribosome production factor 1 homolog
(S. cerevisiae)" species:7955 "Danio rerio" [GO:0005730 "nucleolus"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] InterPro:IPR004154
ZFIN:ZDB-GENE-040625-177 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GeneTree:ENSGT00550000074691 EMBL:CR854846 EMBL:CR848761
IPI:IPI00488496 Ensembl:ENSDART00000143436 Bgee:F1QQ11
Uniprot:F1QQ11
Length = 352
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 91/281 (32%), Positives = 156/281 (55%)
Query: 9 RREYLYRKSLEEKQRAIQEKKDRLRKSLDGN---KKIPTDLKNQALSLQRKLDWEDEGPE 65
RR ++ K EEK++ E K + RK+L K++P ++NQ + + ++ EDE E
Sbjct: 68 RRHTMFLKLKEEKRKKRMELKKKERKALGDKAPPKEVPKTIENQRIYDETTVNPEDE--E 125
Query: 66 LAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRM 125
+A GT+ + Y + + +PK++ITTS P R F +L + P++
Sbjct: 126 VAFDEGTD--------EFSAY-FNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAYVY 176
Query: 126 NRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIP 185
R +K++I C + T +V++E R +P+ +V+CHLP GPTA+F +S V +R ++
Sbjct: 177 YRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEMK 236
Query: 186 DLG-TMSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYISFRHH 243
G +E P ++ +NF T+LG + + LFP P+ +++ TF N D+I FR H
Sbjct: 237 RRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFFRFH 296
Query: 244 NYK-RDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
Y ++ K + ++E+GPRF LKL ++ GT D+ + + EW
Sbjct: 297 RYIFKNEKKVGIQELGPRFTLKLRSLQKGTFDS-KFGEYEW 336
>UNIPROTKB|E2RLN4 [details] [associations]
symbol:RPF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR004154 GO:GO:0005730
GO:GO:0003723 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GeneTree:ENSGT00550000074691
KO:K14846 CTD:80135 OMA:IENQRVY EMBL:AAEX03004866
RefSeq:XP_537096.1 ProteinModelPortal:E2RLN4
Ensembl:ENSCAFT00000032351 GeneID:479972 KEGG:cfa:479972
NextBio:20855075 Uniprot:E2RLN4
Length = 349
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 96/284 (33%), Positives = 150/284 (52%)
Query: 9 RREYLYR--KSLEEKQR-AIQEKKDRLRKSLDGN---KKIPTDLKNQALSLQRKLDWEDE 62
RR ++ K + K++ AI++K + R++L K +P + NQ + + +D DE
Sbjct: 62 RRHLMFTRWKQQQRKEKLAIKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETIVDPNDE 121
Query: 63 GPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNS 122
E+A T+ Q PKI+ITTS P R ++L + PNS
Sbjct: 122 --EVAYDEATDEFASYFNRQTS---------PKILITTSDRPHGRTVRLCEQLSTVIPNS 170
Query: 123 QRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRH 182
R +K++I C + D TD IV++E R IP+ L++ HLP GPTA+F MS V +R
Sbjct: 171 HVYYRRGLALKKIIPQCISRDFTDLIVINEDRKIPNGLILSHLPSGPTAHFKMSSVRLRK 230
Query: 183 DIPDLGT-MSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYISF 240
+I G +E P ++ +NF T+LG + + LFP P+ +++ TF N DYI F
Sbjct: 231 EIKRRGKDPTEHIPEVILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFF 290
Query: 241 RHHNYK-RDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
R H Y + K + ++E+GPRF LKL ++ GT D+ + + EW
Sbjct: 291 RFHRYIFKSEKKVGIQELGPRFTLKLRSLQKGTFDS-KYGEYEW 333
>UNIPROTKB|Q9H9Y2 [details] [associations]
symbol:RPF1 "Ribosome production factor 1" species:9606
"Homo sapiens" [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR004154 GO:GO:0005730 GO:GO:0003723 GO:GO:0019843
GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AL359762 eggNOG:COG2136
KO:K14846 EMBL:AF322053 EMBL:AK022537 EMBL:AL844170 EMBL:BC016051
EMBL:CR627468 EMBL:AL359584 IPI:IPI00292221 PIR:T50616
RefSeq:NP_079341.2 UniGene:Hs.481202 ProteinModelPortal:Q9H9Y2
STRING:Q9H9Y2 PhosphoSite:Q9H9Y2 DMDM:71153718 SWISS-2DPAGE:Q9H9Y2
PaxDb:Q9H9Y2 PRIDE:Q9H9Y2 DNASU:80135 Ensembl:ENST00000370654
Ensembl:ENST00000370656 GeneID:80135 KEGG:hsa:80135 UCSC:uc001djv.4
CTD:80135 GeneCards:GC01P084945 HGNC:HGNC:30350 HPA:HPA024642
neXtProt:NX_Q9H9Y2 PharmGKB:PA165752348 HOGENOM:HOG000172062
HOVERGEN:HBG083559 InParanoid:Q9H9Y2 OMA:IENQRVY OrthoDB:EOG40VVQ0
ChiTaRS:RPF1 GenomeRNAi:80135 NextBio:70391 Bgee:Q9H9Y2
CleanEx:HS_BXDC5 Genevestigator:Q9H9Y2 GermOnline:ENSG00000117133
Uniprot:Q9H9Y2
Length = 349
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 95/284 (33%), Positives = 146/284 (51%)
Query: 9 RREYLYR--KSLEEKQRAIQEKKDRLRKSLDGNKK----IPTDLKNQALSLQRKLDWEDE 62
RR ++ K + K++ +KK + + G+K +P + NQ + + +D DE
Sbjct: 62 RRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDE 121
Query: 63 GPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNS 122
E+A T+ Q PKI+ITTS P R ++L + PNS
Sbjct: 122 --EVAYDEATDEFASYFNKQTS---------PKILITTSDRPHGRTVRLCEQLSTVIPNS 170
Query: 123 QRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRH 182
R +K++I C A D TD IV++E R P+ L++ HLP GPTA+F MS V +R
Sbjct: 171 HVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRK 230
Query: 183 DIPDLGT-MSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYISF 240
+I G +E P ++ +NF T+LG + + LFP P+ +++ TF N DYI F
Sbjct: 231 EIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFF 290
Query: 241 RHHNYK-RDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
R H Y R K + ++E+GPRF LKL ++ GT D+ + + EW
Sbjct: 291 RFHRYIFRSEKKVGIQELGPRFTLKLRSLQKGTFDS-KYGEYEW 333
>UNIPROTKB|Q5R631 [details] [associations]
symbol:RPF1 "Ribosome production factor 1" species:9601
"Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] InterPro:IPR004154 GO:GO:0005730
GO:GO:0003723 GO:GO:0019843 GO:GO:0006364 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
KO:K14846 CTD:80135 HOVERGEN:HBG083559 EMBL:CR860667
RefSeq:NP_001126626.1 UniGene:Pab.1862 ProteinModelPortal:Q5R631
GeneID:100173623 KEGG:pon:100173623 InParanoid:Q5R631
Uniprot:Q5R631
Length = 349
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 95/284 (33%), Positives = 146/284 (51%)
Query: 9 RREYLYR--KSLEEKQRAIQEKKDRLRKSLDGNKK----IPTDLKNQALSLQRKLDWEDE 62
RR ++ K + K++ +KK + + G+K +P + NQ + + +D DE
Sbjct: 62 RRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDE 121
Query: 63 GPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNS 122
E+A T+ Q PKI+ITTS P R ++L + PNS
Sbjct: 122 --EVAYDEATDEFASYFNKQTS---------PKILITTSDRPHGRTVRLCEQLSTVIPNS 170
Query: 123 QRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRH 182
R +K++I C A D TD IV++E R P+ L++ HLP GPTA+F MS V +R
Sbjct: 171 HVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRK 230
Query: 183 DIPDLGT-MSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYISF 240
+I G +E P ++ +NF T+LG + + LFP P+ +++ TF N DYI F
Sbjct: 231 EIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFF 290
Query: 241 RHHNYK-RDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
R H Y R K + ++E+GPRF LKL ++ GT D+ + + EW
Sbjct: 291 RFHRYIFRSEKKVGIQELGPRFTLKLRSLQKGTFDS-KYGEYEW 333
>UNIPROTKB|A4FUG9 [details] [associations]
symbol:BXDC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004154 GO:GO:0005730
GO:GO:0003723 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 eggNOG:COG2136
GeneTree:ENSGT00550000074691 KO:K14846 CTD:80135
HOGENOM:HOG000172062 HOVERGEN:HBG083559 OMA:IENQRVY
OrthoDB:EOG40VVQ0 EMBL:DAAA02008080 EMBL:BC114877 IPI:IPI00706366
RefSeq:NP_001076886.1 UniGene:Bt.18412 STRING:A4FUG9
Ensembl:ENSBTAT00000010676 GeneID:513081 KEGG:bta:513081
InParanoid:A4FUG9 NextBio:20870694 Uniprot:A4FUG9
Length = 349
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 94/284 (33%), Positives = 147/284 (51%)
Query: 9 RREYLYR--KSLEEKQRAIQEKKDRLRKSLDGNKK----IPTDLKNQALSLQRKLDWEDE 62
RR ++ K + K++ +KK + + G+K +P + NQ + + +D DE
Sbjct: 62 RRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETIVDPNDE 121
Query: 63 GPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNS 122
E+A T+ Q PKI+ITTS P R ++L + PNS
Sbjct: 122 --EVAYDEATDEFASYFNRQTS---------PKILITTSDRPHGRTVRLCEQLSTVIPNS 170
Query: 123 QRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRH 182
R +K++I C + D TD IV++E R IP+ L++ HLP GPTA+F MS V +R
Sbjct: 171 HVYYRRGLALKKIIPQCISRDFTDLIVINEDRKIPNGLILSHLPNGPTAHFKMSSVRLRK 230
Query: 183 DIPDLGT-MSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYISF 240
+I G +E P ++ +NF T+LG + + LFP P+ +++ TF N DYI F
Sbjct: 231 EIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFF 290
Query: 241 RHHNYK-RDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
R H Y + K + ++E+GPRF LKL ++ GT D+ + + EW
Sbjct: 291 RFHRYIFKSEKKVGIQELGPRFTLKLRSLQKGTFDS-KYGEYEW 333
>RGD|1559755 [details] [associations]
symbol:Rpf1 "ribosome production factor 1 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003723 "RNA
binding" evidence=IEA;ISO;ISS] [GO:0005730 "nucleolus"
evidence=IEA;ISO;ISS] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] InterPro:IPR004154
RGD:1559755 GO:GO:0005730 GO:GO:0003723 GO:GO:0019843 GO:GO:0006364
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 eggNOG:COG2136 HOVERGEN:HBG083559 OrthoDB:EOG40VVQ0
EMBL:RNOR03268045 EMBL:BC086515 IPI:IPI00915544 UniGene:Rn.63896
ProteinModelPortal:Q5RJS9 STRING:Q5RJS9 InParanoid:Q5RJS9
ArrayExpress:Q5RJS9 Genevestigator:Q5RJS9 Uniprot:Q5RJS9
Length = 345
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 95/284 (33%), Positives = 147/284 (51%)
Query: 9 RREYLYR--KSLEEKQRAIQEKK-DRLRKSLDGN---KKIPTDLKNQALSLQRKLDWEDE 62
RR ++ K + K++ +KK R R++L K +P + NQ + + +D DE
Sbjct: 62 RRHLMFTRWKQQQRKEKLAAKKKLKREREALGDKAPPKPVPKTIDNQRVYDETTVDPNDE 121
Query: 63 GPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNS 122
E+A T+ Q PKI+ITTS P R ++L + P+S
Sbjct: 122 --EVAYDEATDEFASYFNRQTS---------PKILITTSDRPHGRTVRLCEQLSTVIPDS 170
Query: 123 QRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRH 182
R +K++I C A D TD IV++E R P+ L++ HLP GPTA+F MS V +R
Sbjct: 171 HVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRK 230
Query: 183 DIPDLGT-MSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYISF 240
+I G +E P ++ +NF T+LG + + LFP P+ +++ TF N DYI F
Sbjct: 231 EIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFF 290
Query: 241 RHHNYK-RDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
R H Y + K + ++E+GPRF LKL ++ GT D+ + + EW
Sbjct: 291 RFHRYIFKSEKKVGIQELGPRFTLKLRSLQKGTFDS-KYGEYEW 333
>UNIPROTKB|I3LN44 [details] [associations]
symbol:RPF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004154 GO:GO:0005730
GO:GO:0003723 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GeneTree:ENSGT00550000074691
OMA:IENQRVY Ensembl:ENSSSCT00000032078 Uniprot:I3LN44
Length = 339
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 94/284 (33%), Positives = 147/284 (51%)
Query: 9 RREYLYR--KSLEEKQRAIQEKKDRLRKSLDGNKK----IPTDLKNQALSLQRKLDWEDE 62
RR ++ K + K++ +KK + + G+K +P + NQ + + +D DE
Sbjct: 52 RRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETIVDPNDE 111
Query: 63 GPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNS 122
E+A T+ Q PKI+ITTS P R ++L + PNS
Sbjct: 112 --EVAYDEATDEFASYFNRQTC---------PKILITTSDRPHGRTVRLCEQLSTVIPNS 160
Query: 123 QRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRH 182
R +K++I C + D TD IV++E R IP+ L++ HLP GPTA+F MS V +R
Sbjct: 161 HVYYRRGLALKKIIPQCISRDFTDLIVINEDRKIPNGLILSHLPNGPTAHFKMSSVRLRK 220
Query: 183 DIPDLGT-MSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYISF 240
+I G +E P ++ +NF T+LG + + LFP P+ +++ TF N DYI F
Sbjct: 221 EIKRRGKDPTEHTPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFF 280
Query: 241 RHHNYK-RDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
R H Y + K + ++E+GPRF LKL ++ GT D+ + + EW
Sbjct: 281 RFHRYIFKSEKKVGIQELGPRFTLKLRSLQKGTFDS-KYGEYEW 323
>MGI|MGI:1917535 [details] [associations]
symbol:Rpf1 "ribosome production factor 1 homolog (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR004154 MGI:MGI:1917535
GO:GO:0005730 GO:GO:0003723 GO:GO:0019843 GO:GO:0006364
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 eggNOG:COG2136 GeneTree:ENSGT00550000074691
KO:K14846 CTD:80135 HOGENOM:HOG000172062 HOVERGEN:HBG083559
OMA:IENQRVY OrthoDB:EOG40VVQ0 EMBL:AK171079 EMBL:BC028802
EMBL:BC056165 EMBL:BC089369 IPI:IPI00380313 RefSeq:NP_081608.1
RefSeq:NP_081647.2 UniGene:Mm.28128 ProteinModelPortal:Q7TND5
STRING:Q7TND5 PhosphoSite:Q7TND5 PaxDb:Q7TND5 PRIDE:Q7TND5
Ensembl:ENSMUST00000029838 GeneID:70285 KEGG:mmu:70285
UCSC:uc008rrl.2 InParanoid:Q7TND5 NextBio:331302 Bgee:Q7TND5
CleanEx:MM_BXDC5 Genevestigator:Q7TND5
GermOnline:ENSMUSG00000028187 Uniprot:Q7TND5
Length = 349
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 93/284 (32%), Positives = 146/284 (51%)
Query: 9 RREYLYR--KSLEEKQRAIQEKKDRLRKSLDGNKK----IPTDLKNQALSLQRKLDWEDE 62
RR ++ K + K++ +KK + + G+K +P + NQ + + +D DE
Sbjct: 62 RRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDE 121
Query: 63 GPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNS 122
E+A T+ Q PKI+ITTS P R ++L + P+S
Sbjct: 122 --EVAYDEATDEFASYFNRQTS---------PKILITTSDRPHGRTVRLCEQLSTVIPDS 170
Query: 123 QRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRH 182
R +K++I C A D TD IV++E R P+ L++ HLP GPTA+F MS V +R
Sbjct: 171 HVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRK 230
Query: 183 DIPDLGT-MSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYISF 240
+I G +E P ++ +NF T+LG + + LFP P+ +++ TF N DYI F
Sbjct: 231 EIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFF 290
Query: 241 RHHNYK-RDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
R H Y + K + ++E+GPRF LKL ++ GT D+ + + EW
Sbjct: 291 RFHRYIFKSEKKVGIQELGPRFTLKLRSLQKGTFDS-KYGEYEW 333
>FB|FBgn0032408 [details] [associations]
symbol:CG6712 species:7227 "Drosophila melanogaster"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] InterPro:IPR004154 GO:GO:0005730 EMBL:AE014134
GO:GO:0003723 GO:GO:0019843 GO:GO:0006364 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
eggNOG:COG2136 EMBL:AY051683 RefSeq:NP_477479.1 UniGene:Dm.8705
ProteinModelPortal:Q9VKB4 STRING:Q9VKB4 PaxDb:Q9VKB4 PRIDE:Q9VKB4
EnsemblMetazoa:FBtr0080364 GeneID:34631 KEGG:dme:Dmel_CG6712
UCSC:CG6712-RA FlyBase:FBgn0032408 GeneTree:ENSGT00550000074691
InParanoid:Q9VKB4 KO:K14846 OMA:IFFRHYR OrthoDB:EOG4MPG5T
PhylomeDB:Q9VKB4 GenomeRNAi:34631 NextBio:789413 Bgee:Q9VKB4
GermOnline:CG6712 Uniprot:Q9VKB4
Length = 394
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 99/292 (33%), Positives = 161/292 (55%)
Query: 9 RREYLYRKSLEEK-QRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELA 67
+R LY+K +EK ++ +QE++ R RK+ G +P + + SL+ K D + E L
Sbjct: 108 QRLALYKKMKKEKHKKKMQERRAR-RKA--G---VPANPGHTIESLREK-D-QTEVANLN 159
Query: 68 VSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNR 127
S E L D + +PK++IT + +P ++ + F EL IFPN+ R
Sbjct: 160 DSDNEELQKE-LQLDDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIFPNALVKIR 218
Query: 128 GNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIP-D 186
+K++ + + TD ++V+E R P+ L++ HLP GPTA+F +S+V + DI D
Sbjct: 219 NKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRD 278
Query: 187 LGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYISFRHHNY 245
+++ P ++ +NF T+LG V +L LF P+ +R VTF N DYI FRHH Y
Sbjct: 279 HKEITKHRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRY 338
Query: 246 K--RDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRILNSR 295
+ ++GK ++L+E+GPRF LKL ++ GT D+ + D W + + SR
Sbjct: 339 EFTKEGKRVKLRELGPRFTLKLRSLQEGTFDS-KTGDYAWIISNKRHAMESR 389
>ASPGD|ASPL0000059866 [details] [associations]
symbol:AN0647 species:162425 "Emericella nidulans"
[GO:0032040 "small-subunit processome" evidence=IEA] [GO:0034457
"Mpp10 complex" evidence=IEA] [GO:0030515 "snoRNA binding"
evidence=IEA] [GO:0042134 "rRNA primary transcript binding"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0004812 "aminoacyl-tRNA ligase
activity" evidence=IEA] InterPro:IPR004154 EMBL:BN001308
GO:GO:0003676 GO:GO:0030529 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
EnsemblFungi:CADANIAT00002029 OMA:NESAADI Uniprot:C8VS07
Length = 144
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 70/137 (51%), Positives = 97/137 (70%)
Query: 160 LVICHLPYGPTAYFTMSDVIMRHDIPDL--GTMSEQYPHLVFHNFKTQLGQRVMSILKYL 217
+ I HLP+GPTA F++ +V++R DIP+ GT+SE YPHL+F FKT+LG+RV+ ILK+L
Sbjct: 1 MTISHLPHGPTASFSLHNVVLRADIPNAARGTVSESYPHLIFEGFKTKLGKRVVQILKHL 60
Query: 218 FPVPKEDSK---RIVTFANHDDYISFRHHNYKRDG-KDIELKEVGPRFQLKLYEIKLGTL 273
FP P+E K R+VTF N +D I RHH + + G KD EL EVGPR ++L+EI+ G+L
Sbjct: 61 FP-PREAGKVGNRVVTFVNKEDSIEVRHHVFVKTGYKDAELAEVGPRMTMRLFEIRGGSL 119
Query: 274 DTVEAADTEWALFRMGR 290
+ + D EWAL + R
Sbjct: 120 EKGSSGDVEWALTQYTR 136
>DICTYBASE|DDB_G0285829 [details] [associations]
symbol:bxdc5 "brix domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0042134 "rRNA primary
transcript binding" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0000027 "ribosomal large subunit assembly"
evidence=ISS] InterPro:IPR004154 dictyBase:DDB_G0285829
GO:GO:0005730 GenomeReviews:CM000153_GR InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GO:GO:0042134 GO:GO:0000027 EMBL:AAFI02000080 eggNOG:COG2136
KO:K14846 OMA:IENQRVY RefSeq:XP_638044.1 ProteinModelPortal:Q54MN3
STRING:Q54MN3 EnsemblProtists:DDB0232092 GeneID:8625308
KEGG:ddi:DDB_G0285829 InParanoid:Q54MN3 Uniprot:Q54MN3
Length = 317
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 82/273 (30%), Positives = 139/273 (50%)
Query: 5 QARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGP 64
+ + +R L +K L+ ++ +EK + RK ++I D A + R ++
Sbjct: 28 KCKAKRVLLVQK-LQAAKKTAREKARKQRKK---EREILGDAA-PAKEVPRTIESMRRAD 82
Query: 65 ELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQR 124
E V + ++D+ + PKI++TT++ + F + + PN +
Sbjct: 83 ETIVDTENDKEFEEEINKDEFESYFDGRVPKIVVTTNQRSTKEAVEFAQVFTKLLPNCEF 142
Query: 125 MNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDI 184
+R Y +K+++ C D TD IVV+E +GI D L I HLP GPTA F +++++M DI
Sbjct: 143 FHRRKYHLKEIVQFCNNRDYTDIIVVNETKGIIDELTISHLPNGPTAVFRLTNLVMPEDI 202
Query: 185 PDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYISFRHH 243
P G M+ L+ +NF T+LG + + +F P +R+ T N D+I FR H
Sbjct: 203 PGGGEMTSHKAELIVNNFTTRLGHSIGRMFASMFAQDPNFKGRRVCTLHNQRDFIFFRQH 262
Query: 244 NYKRDGK-DIELKEVGPRFQLKLYEIKLGTLDT 275
Y + K D ++E+GPRF LKL ++ G+ +T
Sbjct: 263 RYIFESKEDANVQELGPRFTLKLKSLQKGSFNT 295
>POMBASE|SPAC4F8.04 [details] [associations]
symbol:SPAC4F8.04 "Brix domain protein Rpf1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000027 "ribosomal
large subunit assembly" evidence=ISO] [GO:0000463 "maturation of
LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=ISO] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO;IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0042134 "rRNA primary transcript binding"
evidence=ISO] [GO:0042254 "ribosome biogenesis" evidence=ISO]
InterPro:IPR004154 PomBase:SPAC4F8.04 EMBL:CU329670 GO:GO:0005730
GO:GO:0000463 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GO:GO:0042134 GO:GO:0000027
GO:GO:0000466 GO:GO:0005732 eggNOG:COG2136 KO:K14846
HOGENOM:HOG000172062 OMA:IENQRVY OrthoDB:EOG4JT3FB PIR:T38834
RefSeq:NP_593868.1 ProteinModelPortal:O14180 STRING:O14180
EnsemblFungi:SPAC4F8.04.1 GeneID:2543503 KEGG:spo:SPAC4F8.04
NextBio:20804513 Uniprot:O14180
Length = 306
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 88/292 (30%), Positives = 150/292 (51%)
Query: 1 MLRRQARLRREYLYRKS-LEE-KQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKL- 57
++R+Q ++ + K LE K+RA +E+KD +K L ++ IP ++++ + + +
Sbjct: 8 IVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKKRLRLSENIPATIESKRVYDETIIE 67
Query: 58 DWEDEGPELAVSIGTETSGGGLTHQDDEYRWAGIED---PKIMITTSRDPSSRLKMFVKE 114
D DE EL + +DDE+ E+ PK+++TTS+ S + F E
Sbjct: 68 DKPDE--ELQAEL-----------KDDEFSAYFSEERKVPKLLVTTSKRASRKCYDFASE 114
Query: 115 LRLIFPNSQ-RMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYF 173
L FPN++ R G+ E+ ++ A TD +V++E R + L + HLP GP+ YF
Sbjct: 115 LLDCFPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPSFYF 174
Query: 174 TMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLF-PVPKEDSKRIVTFA 232
T+S++ +I + G + P L+ +NF T+LG V + LF P+ +++VT
Sbjct: 175 TLSNLQTAKEISNHGRSTGHIPELIINNFSTRLGMTVARAFQSLFIQTPQIQGRQVVTIH 234
Query: 233 NHDDYISFRHHNYK-R------DGKDIELKEVGPRFQLKLYEIKLGTLDTVE 277
D++ FR H Y R DG L+E+GPRF ++L ++ G D E
Sbjct: 235 CQRDFLFFRRHRYAFREKSNMPDGIGTGLQELGPRFTMRLRMVQKGVWDRKE 286
>SGD|S000001130 [details] [associations]
symbol:RPF1 "Protein involved in assembly and export of the
large ribosomal subunit" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA;IPI] [GO:0000055 "ribosomal large subunit export
from nucleus" evidence=IMP] [GO:0000027 "ribosomal large subunit
assembly" evidence=IPI] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042134 "rRNA primary
transcript binding" evidence=IPI] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
InterPro:IPR004154 SGD:S000001130 GO:GO:0005730 EMBL:BK006934
GO:GO:0030687 GO:GO:0000055 GO:GO:0000463 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GO:GO:0042134 GO:GO:0000027 GO:GO:0000466 EMBL:U00060
eggNOG:COG2136 GeneTree:ENSGT00550000074691 KO:K14846
HOGENOM:HOG000172062 OMA:IENQRVY PIR:S46718 RefSeq:NP_011956.1
ProteinModelPortal:P38805 DIP:DIP-6511N IntAct:P38805
MINT:MINT-634203 STRING:P38805 PaxDb:P38805 EnsemblFungi:YHR088W
GeneID:856488 KEGG:sce:YHR088W CYGD:YHR088w OrthoDB:EOG4JT3FB
NextBio:982188 Genevestigator:P38805 GermOnline:YHR088W
Uniprot:P38805
Length = 295
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 80/283 (28%), Positives = 135/283 (47%)
Query: 7 RLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGPEL 66
+L+R+ ++ EK + E+ RK ++ P +L+ Q L + +
Sbjct: 12 KLKRQEIFADIKHEKNK---ERHTMRRKRAKEERENP-ELREQRLK-ENVTQTIENTRVY 66
Query: 67 AVSIGTETSGGGLTHQDDEYRWAGI---EDPKIMITTSRDPSSRLKMFVKELRLIFPNSQ 123
+I E G +DD R+ E PKI +TT+ + F L I PN
Sbjct: 67 DETINKEVEGD----EDDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVT 122
Query: 124 RMNRG-NYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRH 182
+ R Y++K++ C + TD ++++E + L HLP GPT YF +S +
Sbjct: 123 FVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVK 182
Query: 183 DIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYISFR 241
I G + P L+ +NF+T+LGQ V + + + P P + ++++T N DYI FR
Sbjct: 183 KIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFR 242
Query: 242 HHNYK-RDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
H Y +D + + L+E+GP+F LKL ++ G + +TEW
Sbjct: 243 RHRYVFKDNERVGLQELGPQFTLKLKRLQRGIKE-----ETEW 280
>ASPGD|ASPL0000077745 [details] [associations]
symbol:AN8834 species:162425 "Emericella nidulans"
[GO:0000055 "ribosomal large subunit export from nucleus"
evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0042134 "rRNA primary transcript binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0030687 "preribosome,
large subunit precursor" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0004812
"aminoacyl-tRNA ligase activity" evidence=IEA] InterPro:IPR004154
EMBL:BN001303 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AACD01000162 eggNOG:COG2136
KO:K14846 HOGENOM:HOG000172062 OrthoDB:EOG4JT3FB RefSeq:XP_682103.1
ProteinModelPortal:Q5AS96 STRING:Q5AS96
EnsemblFungi:CADANIAT00006223 GeneID:2868340 KEGG:ani:AN8834.2
OMA:SGQEWEW Uniprot:Q5AS96
Length = 435
Score = 213 (80.0 bits), Expect = 6.3e-24, Sum P(3) = 6.3e-24
Identities = 56/173 (32%), Positives = 88/173 (50%)
Query: 94 PKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRG------NYEMKQLIHACRANDVTDF 147
PKI+ITTS + S L + L +FPNS + R + ++++ + T
Sbjct: 208 PKILITTSLN--STLHHEAEILTQLFPNSVYIRRTAHAHAHKFSIREIAKFASNREYTTL 265
Query: 148 IVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLG 207
I++ E P L I HLP GP +F++S+ + IP G +E +P L+ +NF+T LG
Sbjct: 266 IILQEDSKKPAGLDIVHLPKGPMFHFSISNWVEGKKIPGHGKPTEHWPELILNNFRTPLG 325
Query: 208 QRVMSILKYLFPV-PKEDSKRIVTFANHDDYISFRHHNYK-RDGKDIELKEVG 258
+ + LFP P + +++VT N DYI R H Y R+ ++ E VG
Sbjct: 326 LLTAHLFRTLFPPQPDIEGRQVVTLHNQRDYIFVRRHRYVFREKRETEKAVVG 378
Score = 66 (28.3 bits), Expect = 6.3e-24, Sum P(3) = 6.3e-24
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 9 RREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTD-LK-NQALSLQRKLDWEDEGPEL 66
+R+ L+ K K A + ++ +K N K+ + LK N L+L+RK W+D G ++
Sbjct: 25 KRQLLHIKRKRAKDAARRAQRFSTKKEEAKNPKLKEERLKRNIPLTLERKRVWDDAGSDV 84
Query: 67 AVSIG 71
+G
Sbjct: 85 EEPLG 89
Score = 59 (25.8 bits), Expect = 6.3e-24, Sum P(3) = 6.3e-24
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 248 DGKDIE--------LKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
DGK+I+ L+E+GPRF LKL + G + + EW
Sbjct: 380 DGKEIKGAEGIRTGLQELGPRFTLKLRRVDKG-IQRASGQEWEW 422
>CGD|CAL0003496 [details] [associations]
symbol:RPF1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0042134 "rRNA primary transcript
binding" evidence=IEA] [GO:0000055 "ribosomal large subunit export
from nucleus" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR004154 CGD:CAL0003496 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AACQ01000023
EMBL:AACQ01000025 eggNOG:COG2136 KO:K14846 HOGENOM:HOG000172062
RefSeq:XP_720192.1 RefSeq:XP_720420.1 ProteinModelPortal:Q5AFD8
STRING:Q5AFD8 GeneID:3637890 GeneID:3638097 KEGG:cal:CaO19.10184
KEGG:cal:CaO19.2667 Uniprot:Q5AFD8
Length = 296
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 73/269 (27%), Positives = 136/269 (50%)
Query: 9 RREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAV 68
RR+ ++ + EK + Q K R ++ + ++ P +L+ + ++ D D
Sbjct: 17 RRQKVFAEIKHEKNK--QRHKQRAERAKE-ERENP-ELREERIAANIP-DTIDSKRIYDE 71
Query: 69 SIGTETSGGGLTHQDDEYR--WAGI-EDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRM 125
+I E G DDE++ + + E+PKI++TTS + F + PN +
Sbjct: 72 TIAAEVEG------DDEFQSYFTNLLEEPKILLTTSANAKKPAYEFADMIMDFLPNVTFI 125
Query: 126 NRGN-YEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDI 184
R Y M+ + C D T +V++E + + + + +LP GPT YF+++ ++ I
Sbjct: 126 KRKKEYTMQDMAKYCSNRDFTALLVINEDKKKVNGITLINLPEGPTFYFSITSIVDGKRI 185
Query: 185 PDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFP-VPKEDSKRIVTFANHDDYISFRHH 243
G + P +V +NF ++LG+ V + + +FP P+ ++++T N DYI FR H
Sbjct: 186 KGHGKAGDYLPEIVLNNFNSRLGKTVGRLFQSIFPHKPELQGRQVITLHNQRDYIFFRRH 245
Query: 244 NYK-RDGKDIELKEVGPRFQLKLYEIKLG 271
Y R+ + + L+E+GP+F LKL ++ G
Sbjct: 246 RYIFRNEEKVGLQELGPQFTLKLRRMQKG 274
>UNIPROTKB|E2QZ99 [details] [associations]
symbol:BRIX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR004154 GO:GO:0005730 GeneTree:ENSGT00390000014467
OMA:PNMHRRV InterPro:IPR007109 InterPro:IPR026532 PANTHER:PTHR13634
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
EMBL:AAEX03003179 Ensembl:ENSCAFT00000029840 Uniprot:E2QZ99
Length = 347
Score = 124 (48.7 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 45/191 (23%), Positives = 88/191 (46%)
Query: 87 RWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLI--HACRANDV 144
+W E +I+I +SR + R + +++LR++ P+S+ + + + K + C +
Sbjct: 55 KWKNKE--RILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNC 112
Query: 145 TDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGT-MSEQYPHLVFHNFK 203
I + + + + P+GP+A F + ++ ++ G + P L F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 172
Query: 204 TQLGQRVM--SILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKRDGKDIELKEVGPRF 261
+L + +L +F P+ K F + D+ I FR N++ +D L E+GPRF
Sbjct: 173 DELPHYALLKELLIQIFSTPRYHPKSQPFFHHFDNRIWFR--NFQIIEEDAALVEIGPRF 230
Query: 262 QLKLYEIKLGT 272
L L +I G+
Sbjct: 231 VLNLIKIFQGS 241
>UNIPROTKB|Q3SZZ0 [details] [associations]
symbol:BRIX1 "Ribosome biogenesis protein BRX1 homolog"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR004154
GO:GO:0005730 GO:GO:0042254 EMBL:BC102643 IPI:IPI00695603
RefSeq:NP_001029701.1 UniGene:Bt.48891 STRING:Q3SZZ0
Ensembl:ENSBTAT00000025572 GeneID:518501 KEGG:bta:518501 CTD:55299
eggNOG:COG5154 GeneTree:ENSGT00390000014467 HOGENOM:HOG000212937
HOVERGEN:HBG039185 InParanoid:Q3SZZ0 KO:K14820 OMA:PNMHRRV
OrthoDB:EOG4STS4T NextBio:20872668 InterPro:IPR007109
InterPro:IPR026532 PANTHER:PTHR13634 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 Uniprot:Q3SZZ0
Length = 353
Score = 116 (45.9 bits), Expect = 0.00030, P = 0.00030
Identities = 46/197 (23%), Positives = 89/197 (45%)
Query: 87 RWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLI--HACRANDV 144
+W E +I+I +SR + R + +++LR++ P+S+ + + + K + C +
Sbjct: 55 KWKNKE--RILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNC 112
Query: 145 TDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGT-MSEQYPHLVFHNFK 203
I + + + + P+GP+A F + ++ ++ G + P L F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 172
Query: 204 TQLGQRVM--SILKYLFPVPKEDSK------RIVTFANHDDYISFRHHNYKRDGKDIELK 255
+L + +L +F P+ K + TF D+ I FR N++ +D L
Sbjct: 173 DELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFR--NFQIIEEDAALV 230
Query: 256 EVGPRFQLKLYEIKLGT 272
E+GPRF L L +I G+
Sbjct: 231 EIGPRFVLNLIKIFQGS 247
>UNIPROTKB|Q8TDN6 [details] [associations]
symbol:BRIX1 "Ribosome biogenesis protein BRX1 homolog"
species:9606 "Homo sapiens" [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004154 GO:GO:0005730 GO:GO:0042254
CTD:55299 eggNOG:COG5154 HOGENOM:HOG000212937 HOVERGEN:HBG039185
KO:K14820 OMA:PNMHRRV OrthoDB:EOG4STS4T InterPro:IPR007109
InterPro:IPR026532 PANTHER:PTHR13634 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AF347667 EMBL:AY364244
EMBL:AK289610 EMBL:CH471119 EMBL:BC001546 EMBL:BC036741
IPI:IPI00181728 RefSeq:NP_060791.3 UniGene:Hs.718510
ProteinModelPortal:Q8TDN6 IntAct:Q8TDN6 MINT:MINT-1373627
STRING:Q8TDN6 PhosphoSite:Q8TDN6 DMDM:30580352 PaxDb:Q8TDN6
PeptideAtlas:Q8TDN6 PRIDE:Q8TDN6 DNASU:55299
Ensembl:ENST00000336767 GeneID:55299 KEGG:hsa:55299 UCSC:uc003jja.3
GeneCards:GC05P034953 HGNC:HGNC:24170 HPA:HPA039614
neXtProt:NX_Q8TDN6 PharmGKB:PA165660166 InParanoid:Q8TDN6
PhylomeDB:Q8TDN6 ChiTaRS:BRIX1 GenomeRNAi:55299 NextBio:59516
ArrayExpress:Q8TDN6 Bgee:Q8TDN6 CleanEx:HS_BXDC2
Genevestigator:Q8TDN6 GermOnline:ENSG00000113460 Uniprot:Q8TDN6
Length = 353
Score = 116 (45.9 bits), Expect = 0.00030, P = 0.00030
Identities = 46/197 (23%), Positives = 89/197 (45%)
Query: 87 RWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLI--HACRANDV 144
+W E +I+I +SR + R + +++LR++ P+S+ + + + K + C +
Sbjct: 55 KWKNKE--RILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNC 112
Query: 145 TDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGT-MSEQYPHLVFHNFK 203
I + + + + P+GP+A F + ++ ++ G + P L F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 172
Query: 204 TQLGQRVM--SILKYLFPVPKEDSK------RIVTFANHDDYISFRHHNYKRDGKDIELK 255
+L + +L +F P+ K + TF D+ I FR N++ +D L
Sbjct: 173 DELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFR--NFQIIEEDAALV 230
Query: 256 EVGPRFQLKLYEIKLGT 272
E+GPRF L L +I G+
Sbjct: 231 EIGPRFVLNLIKIFQGS 247
>UNIPROTKB|F1SND4 [details] [associations]
symbol:BRIX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR004154
GO:GO:0005730 GeneTree:ENSGT00390000014467 OMA:PNMHRRV
InterPro:IPR007109 InterPro:IPR026532 PANTHER:PTHR13634
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
EMBL:CU914241 Ensembl:ENSSSCT00000018322 Uniprot:F1SND4
Length = 353
Score = 116 (45.9 bits), Expect = 0.00030, P = 0.00030
Identities = 46/197 (23%), Positives = 89/197 (45%)
Query: 87 RWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLI--HACRANDV 144
+W E +I+I +SR + R + +++LR++ P+S+ + + + K + C +
Sbjct: 55 KWKNKE--RILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNC 112
Query: 145 TDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGT-MSEQYPHLVFHNFK 203
I + + + + P+GP+A F + ++ ++ G + P L F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 172
Query: 204 TQLGQRVM--SILKYLFPVPKEDSK------RIVTFANHDDYISFRHHNYKRDGKDIELK 255
+L + +L +F P+ K + TF D+ I FR N++ +D L
Sbjct: 173 DELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFR--NFQIIEEDAALV 230
Query: 256 EVGPRFQLKLYEIKLGT 272
E+GPRF L L +I G+
Sbjct: 231 EIGPRFVLNLIKIFQGS 247
>RGD|1308508 [details] [associations]
symbol:Brix1 "BRX1, biogenesis of ribosomes, homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR004154
RGD:1308508 GO:GO:0005730 GO:GO:0042254 CTD:55299 eggNOG:COG5154
HOGENOM:HOG000212937 HOVERGEN:HBG039185 KO:K14820 OrthoDB:EOG4STS4T
InterPro:IPR007109 InterPro:IPR026532 PANTHER:PTHR13634
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
EMBL:BC098005 IPI:IPI00372144 RefSeq:NP_001025086.1
UniGene:Rn.17880 STRING:Q4QQT6 PRIDE:Q4QQT6 GeneID:294799
KEGG:rno:294799 InParanoid:Q4QQT6 NextBio:638598
Genevestigator:Q4QQT6 Uniprot:Q4QQT6
Length = 352
Score = 112 (44.5 bits), Expect = 0.00086, P = 0.00086
Identities = 46/197 (23%), Positives = 87/197 (44%)
Query: 87 RWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLI--HACRANDV 144
+W E +I+I +SR + R + +++LR++ P+S+ + + + K + C +
Sbjct: 54 KWKNKE--RILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNC 111
Query: 145 TDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGT-MSEQYPHLVFHNFK 203
I + + + + P+GP+A F + ++ ++ G + P L F
Sbjct: 112 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 171
Query: 204 TQLGQRVM--SILKYLFPVPKEDSK------RIVTFANHDDYISFRHHNYKRDGKDIELK 255
L + L +F P+ K + TF D+ I FR N++ +D L
Sbjct: 172 DDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFR--NFQIIEEDAALV 229
Query: 256 EVGPRFQLKLYEIKLGT 272
E+GPRF L L +I G+
Sbjct: 230 EIGPRFVLNLIKIFQGS 246
>MGI|MGI:1915082 [details] [associations]
symbol:Brix1 "BRX1, biogenesis of ribosomes, homolog (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR004154
MGI:MGI:1915082 GO:GO:0005730 GO:GO:0042254 CTD:55299
eggNOG:COG5154 GeneTree:ENSGT00390000014467 HOGENOM:HOG000212937
HOVERGEN:HBG039185 KO:K14820 OMA:PNMHRRV OrthoDB:EOG4STS4T
InterPro:IPR007109 InterPro:IPR026532 PANTHER:PTHR13634
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
EMBL:AK002985 EMBL:AK168325 EMBL:BC014832 IPI:IPI00130436
RefSeq:NP_080672.3 UniGene:Mm.28057 ProteinModelPortal:Q9DCA5
IntAct:Q9DCA5 STRING:Q9DCA5 PhosphoSite:Q9DCA5 PaxDb:Q9DCA5
PRIDE:Q9DCA5 DNASU:67832 Ensembl:ENSMUST00000022855 GeneID:67832
KEGG:mmu:67832 UCSC:uc007vgg.1 InParanoid:Q9DCA5 NextBio:325653
Bgee:Q9DCA5 CleanEx:MM_BXDC2 Genevestigator:Q9DCA5
GermOnline:ENSMUSG00000022247 Uniprot:Q9DCA5
Length = 353
Score = 112 (44.5 bits), Expect = 0.00086, P = 0.00086
Identities = 46/197 (23%), Positives = 87/197 (44%)
Query: 87 RWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLI--HACRANDV 144
+W E +I+I +SR + R + +++LR++ P+S+ + + + K + C +
Sbjct: 55 KWKNKE--RILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNC 112
Query: 145 TDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGT-MSEQYPHLVFHNFK 203
I + + + + P+GP+A F + ++ ++ G + P L F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 172
Query: 204 TQLGQRVM--SILKYLFPVPKEDSK------RIVTFANHDDYISFRHHNYKRDGKDIELK 255
L + L +F P+ K + TF D+ I FR N++ +D L
Sbjct: 173 DDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFR--NFQIIEEDAALV 230
Query: 256 EVGPRFQLKLYEIKLGT 272
E+GPRF L L +I G+
Sbjct: 231 EIGPRFVLNLIKIFQGS 247
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 295 295 0.00092 115 3 11 22 0.37 34
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 40
No. of states in DFA: 604 (64 KB)
Total size of DFA: 214 KB (2119 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 27.05u 0.08s 27.13t Elapsed: 00:00:36
Total cpu time: 27.06u 0.08s 27.14t Elapsed: 00:00:38
Start: Thu Aug 15 11:23:08 2013 End: Thu Aug 15 11:23:46 2013