RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16424
(295 letters)
>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein
{Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 180
Score = 201 bits (512), Expect = 2e-65
Identities = 38/178 (21%), Positives = 61/178 (34%), Gaps = 17/178 (9%)
Query: 95 KIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHR 154
+I++TTSR PS R++ FVK+L P + R RG+Y M++L +VV E R
Sbjct: 3 RILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERR 62
Query: 155 GIPDTLVICHLPYGP-----TAYFTMSDVIMRHDI----PDLGTMSEQYPHLVFHNFKTQ 205
G P ++ + GP F + V + + P L + +
Sbjct: 63 GNPG-IIRVYAVEGPERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLDSGVAVE 121
Query: 206 LGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKRDGKDIELKEVGPRFQL 263
+ P+ + D Y VGP +L
Sbjct: 122 FADAFVIAFHARLKPPEAAGYVEAVIESLDARTVAVTFRYGG-------APVGPMLRL 172
>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 154
Score = 177 bits (452), Expect = 7e-57
Identities = 30/178 (16%), Positives = 56/178 (31%), Gaps = 26/178 (14%)
Query: 96 IMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRG 155
+++TTSR PS R + F + L I +NRG ++ ++ R VV E G
Sbjct: 1 MLLTTSRKPSQRTRSFSQRLSRIMGWR-YINRGKMSLRDVLIEAR----GPVAVVSERHG 55
Query: 156 IPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILK 215
P + G + + + P L + L
Sbjct: 56 NPARITF-LDERGGERGYILFNPSFEMK----------KPELADKAVRVSSCPPGSEGLC 104
Query: 216 YLFPVPKEDSKR--IVTFANHDDYISFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLG 271
L + ++S + ++Y R F+L + + ++G
Sbjct: 105 NLMGLEVDESSSRDAWSIRTDEEYAWVMELMDARGTP--------AGFKLLIRDFRVG 154
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 26.3 bits (57), Expect = 1.8
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 90 GIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRA 141
G+ P ++ + + P S + V + L+ + ++G Y CRA
Sbjct: 29 GLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYG-------CRA 73
>d2aala1 d.80.1.6 (A:1-129) Malonate semialdehyde decarboxylase,
MSAD {Pseudomonas pavonaceae [TaxId: 47881]}
Length = 129
Score = 26.4 bits (58), Expect = 2.3
Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 20/110 (18%)
Query: 135 LIHACRANDVTDFIVVHEHRGIPDTLVICH--LPYGPTAYFTMSDVIMRHDIPDLGTMSE 192
++ A + V +HR P +V+ L YG ++ + VI R E
Sbjct: 27 MVDAFGVPANDRYQTVSQHR--PGEMVLEDTGLGYGRSSAVVLLTVISR------PRSEE 78
Query: 193 QYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRH 242
Q K + + L+ + +D + N D SF
Sbjct: 79 Q---------KVCFYKLLTGALERDCGISPDDV-IVALVENSDADWSFGR 118
>d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter
amalonaticus [TaxId: 35703]}
Length = 251
Score = 26.8 bits (59), Expect = 2.9
Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 181 RHDIPDLGTM--SEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTF-ANHDDY 237
R+ D + + PH + +N + +LG + + +Y+ + S RI++ ++ +
Sbjct: 17 RYIAVDKMILKGVDVLPHALINNVEEKLGFKGEKLREYV----RWLSDRILSLRSSPRYH 72
Query: 238 ISFRHHNYKRDGKDIEL 254
+ Y G ++
Sbjct: 73 PTLHIDVYGTIGLIFDM 89
>d1xfja_ d.194.1.2 (A:) Hypothetical protein CC0490 {Caulobacter
crescentus [TaxId: 155892]}
Length = 256
Score = 26.0 bits (56), Expect = 5.6
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 2/95 (2%)
Query: 157 PDTLVICHLPY-GPTAYFTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILK 215
P + P GP +Y + + R + G+ P L V+ L
Sbjct: 152 PANITGVVGPCIGPKSYEVGLEFLHRFEADCPGSGRFFKPGASEDKRFFDLPAFVLDRLA 211
Query: 216 YLFPVPKEDSKRIVTFANHDDYISFRHHNYKRDGK 250
V + + T A + + S R DG
Sbjct: 212 TA-GVERREWVGRDTRAEEEWFFSNRRAFLNNDGD 245
>d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima
[TaxId: 2336]}
Length = 572
Score = 25.8 bits (55), Expect = 8.4
Identities = 10/97 (10%), Positives = 25/97 (25%), Gaps = 8/97 (8%)
Query: 166 PYGPTAYFTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDS 225
PY + + + E F F + ++ +P+ +
Sbjct: 157 PYSVKNPMELDERYHDPLLEPFKVDEE------FKAFVEACHILGIRVILDF--IPRTAA 208
Query: 226 KRIVTFANHDDYISFRHHNYKRDGKDIELKEVGPRFQ 262
+ H D+ + D +E+ +
Sbjct: 209 RDSDLIREHPDWFYWIKVEELADYTPPRAEELPFKVP 245
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 24.0 bits (52), Expect = 9.0
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 9/68 (13%)
Query: 5 QARLRREYLYRKSLEEKQRAIQEKKDRLRKSL--------DGNKKIPTDLKNQALSLQRK 56
+ +L E ++ E + + RK L D KI ++ Q +
Sbjct: 14 EKQLAIELKVKQGAENMIQTYSNGSTKDRKLLLTAQQMLQDSKTKI-DIIRMQLRRALQA 72
Query: 57 LDWEDEGP 64
E++
Sbjct: 73 DQLENQAA 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.409
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,145,817
Number of extensions: 55255
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 20
Length of query: 295
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,240,546
Effective search space: 260514660
Effective search space used: 260514660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.9 bits)