BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16425
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 48 SETKAWY-----LHIREVRESDRGWYMCQV-NTDPMKSQVGYLEVVVPPDILDYPTSTDM 101
S+T W LHI+ V D G Y C+ N + G + + PD LD T T+
Sbjct: 247 SQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEA 306
Query: 102 VIREGSNVTLKCAASGSPKPNITWRREGGELIAQ 135
I GS++ C ASG P+P + W R+G L +Q
Sbjct: 307 DI--GSDLRWSCVASGKPRPAVRWLRDGQPLASQ 338
Score = 33.1 bits (74), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 55 LHIREVRESDRGWYMCQVN------TDPMKSQVGYLEVVVPPDILDYPTS------TDMV 102
L+I + SD G Y C T + S+ L + D Y S D
Sbjct: 160 LYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE-DARQYAPSIKAKFPADTY 218
Query: 103 IREGSNVTLKCAASGSPKPNITWRREGG 130
G VTL+C A G+P P I WR+ G
Sbjct: 219 ALTGQMVTLECFAFGNPVPQIKWRKLDG 246
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 16/113 (14%)
Query: 16 ESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV-NT 74
E ++W R +I +N + + S T+ L +R + SD G Y+C+ N
Sbjct: 33 EPAISWFR---------NGKLIEENEKYILKGSNTE---LTVRNIINSDGGPYVCRATNK 80
Query: 75 DPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRR 127
+ +L+V V P I+ T E VTL C A G P P ITW+R
Sbjct: 81 AGEDEKQAFLQVFVQPHIIQLKNETTY---ENGQVTLVCDAEGEPIPEITWKR 130
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 98 STDMVIREGSNVTLKCAASGSPKPNITWRREG 129
S + G +T C ASGSP+P I+W R G
Sbjct: 11 SFNATAERGEEMTFSCRASGSPEPAISWFRNG 42
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKSQV--GYLEVVVPPDILDYPTSTDMVIR-------E 105
L+I V SD+G Y C V++ + V ++ ++ P+ P D+V++
Sbjct: 68 LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALM 127
Query: 106 GSNVTLKCAASGSPKPNITWRR 127
G NVTL+C A G+P P+I WR+
Sbjct: 128 GQNVTLECFALGNPVPDIRWRK 149
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 3/125 (2%)
Query: 8 EIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGW 67
++G+ L +V + T+ I+++ I + + L I V S G
Sbjct: 632 QVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGN 691
Query: 68 YMCQVNTDPMKSQVGY-LEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWR 126
+ C Q L V VPP + PT D +GS+ ++C A G PKP +TW+
Sbjct: 692 FTCHARNLAGHQQFTTPLNVYVPPRWILEPT--DKAFAQGSDAKVECKADGFPKPQVTWK 749
Query: 127 REGGE 131
+ G+
Sbjct: 750 KAVGD 754
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 44 GVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVV-----PPDILDYPTS 98
+ HSE+ L I V++ D+G Y C V D +S E+ + PP I
Sbjct: 383 AIGHSES---VLRIESVKKEDKGMYQCFVRND-RESAEASAELKLGGRFDPPVIRQ--AF 436
Query: 99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGEL 132
+ + G +V LKC A G+P P I+W +G ++
Sbjct: 437 QEETMEPGPSVFLKCVAGGNPTPEISWELDGKKI 470
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 54 YLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDILDYPTSTDM---VIREGSNVT 110
YL+I V +D G Y C KS+VG E ++ P M I G +
Sbjct: 491 YLNITSVHANDGGLYKCIA-----KSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLI 545
Query: 111 LKCAASGSPKPNITWRREGGEL 132
+ C +G P +I W R+ L
Sbjct: 546 VTCPVAGYPIDSIVWERDNRAL 567
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPP--DILDYPTSTDMVIREGSNVTLK 112
L I++ D G Y+C VN V + V P +D PT T + G
Sbjct: 308 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT---VDFGRPAVFT 364
Query: 113 CAASGSPKPNITWRREG 129
C +G+P ++W ++G
Sbjct: 365 CQYTGNPIKTVSWMKDG 381
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
Query: 76 PMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIA- 134
P Q G + + P + +D+ ST ++C ASG+P P I W R G +
Sbjct: 32 PDADQKGPVFLKEPTNRIDFSNST--------GAEIECKASGNPMPEIIWIRSDGTAVGD 83
Query: 135 -------QGNGQEDFPFFK 146
+G+ FP F+
Sbjct: 84 VPGLRQISSDGKLVFPPFR 102
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 54 YLHIREVRESDRGWYMCQVNTDPMKSQVGYLE----VVVPPDILDYPTSTDMVIREGSNV 109
YL IR ++++D G Y C+ + ++ + + V VPP + + + G +V
Sbjct: 156 YLQIRGIKKTDEGTYRCEGRI-LARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSV 214
Query: 110 TLKCAASGSPKPNITWRREG 129
TL C A G P+P ++W ++G
Sbjct: 215 TLVCDADGFPEPTMSWTKDG 234
Score = 32.7 bits (73), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 36/93 (38%)
Query: 41 HRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDILDYPTSTD 100
RI V ++ + L I D G Y C V + + V + ++ T
Sbjct: 50 QRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTP 109
Query: 101 MVIREGSNVTLKCAASGSPKPNITWRREGGELI 133
+EG + + C S P I W+ +G ++I
Sbjct: 110 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVI 142
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 62 ESDRGWYMCQVNTDPMKSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASG 117
+SD G Y C+ + + ++ + +++V PP I S + G +T C ASG
Sbjct: 162 KSDEGIYRCEGRVE-ARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASG 220
Query: 118 SPKPNITWRREG 129
SP+P I+W R G
Sbjct: 221 SPEPAISWFRNG 232
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 17/112 (15%)
Query: 18 TVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM 77
++ W + I++ Q V+ K GV L I D G Y CQ
Sbjct: 34 SIDWYNPQGEKIISTQRVVVQKE---GVRSR------LTIYNANIEDAGIYRCQATDAKG 84
Query: 78 KSQVGYLEVVVPPDILDYPTSTDMV----IREGSNVTLKCAASGSPKPNITW 125
++Q E V +I T ++V ++G + + C S SP P ++W
Sbjct: 85 QTQ----EATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSW 132
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 55 LHIREVRESDRGWYMCQVN-TDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKC 113
L I V + D G Y C V + S L V+VPP L++P+ ++ E ++ +C
Sbjct: 277 LLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPS--NLYAYESMDIEFEC 334
Query: 114 AASGSPKPNITWRREGGELI 133
A SG P P + W + G +I
Sbjct: 335 AVSGKPVPTVNWMKNGDVVI 354
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 14/90 (15%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKSQVGY-LEVVVPPD--------ILDYPTSTDMVIRE 105
L I ++ D G Y C +P ++ G EV + D L P+ +++ E
Sbjct: 179 LQISRLQPGDSGVYRCSAR-NPASTRTGNEAEVRILSDPGLHRQLYFLQRPS--NVIAIE 235
Query: 106 GSNVTLKCAASGSPKPNITWRREGGELIAQ 135
G + L+C SG P P+ TW R GE + Q
Sbjct: 236 GKDAVLECCVSGYPPPSFTWLR--GEEVIQ 263
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDILDYPTSTDMVIR-EGSNVTLKC 113
LH R + D G Y C+ + S + V+ L + + T+ + G V LKC
Sbjct: 85 LHSRH-HKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKC 143
Query: 114 AASGSPKPNITWRREGGEL 132
G P P I W++ +L
Sbjct: 144 EVIGDPMPTIHWQKNQQDL 162
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 99 TDMVIREGSNVTLKCAA-SGSPKPNITWRREG 129
+D V G NV L C+A S P I W+++G
Sbjct: 29 SDAVTMRGGNVLLNCSAESDRGVPVIKWKKDG 60
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 62 ESDRGWYMCQVNTDPMKSQVGYLEVVV----PPDILDYPTSTDMVIREGSNVTLKCAASG 117
+SD G Y C+ + + ++ + +++V PP I S + G +T C ASG
Sbjct: 66 KSDEGIYRCEGRVE-ARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASG 124
Query: 118 SPKPNITWRREG 129
SP+P I+W R G
Sbjct: 125 SPEPAISWFRNG 136
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKSQV-GYLEVVVPPDILDYPTSTDMVIREGSNVTLKC 113
L I V D G Y C+ + V G + V P+ L + T+ I GSN+ C
Sbjct: 258 LQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADI--GSNLRWGC 315
Query: 114 AASGSPKPNITWRREGGELIAQ 135
AA+G P+P + W R G L +Q
Sbjct: 316 AAAGKPRPTVRWLRNGEPLASQ 337
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 15/94 (15%)
Query: 55 LHIREVRESDRGWYMC------QVNTDPMKSQVGYLEVVV-------PPDILDYPTSTDM 101
L+I SD G Y C +T + S+ L + P +P T
Sbjct: 159 LYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKARFPAETYA 218
Query: 102 VIREGSNVTLKCAASGSPKPNITWRREGGELIAQ 135
++ G VTL+C A G+P P I WR+ G L Q
Sbjct: 219 LV--GQQVTLECFAFGNPVPRIKWRKVDGSLSPQ 250
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 47 HSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLE--VVVPPDILDYPTSTDMVIR 104
H+ T L + D G Y C+V+ K Q L+ VV P P +V++
Sbjct: 264 HNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKV-IVVK 322
Query: 105 EGSNVTLKCAASGSPKPNITWRREGGEL 132
+G +VT+ C +G P PN+ W L
Sbjct: 323 QGQDVTIPCKVTGLPAPNVVWSHNAKPL 350
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 57 IREVRESDRGWYMCQVNTDPMKSQVGYLE--VVVPPDILDYPT-STDMVIREGSNVTL-- 111
+R ++D G Y C+V+T P S L V+VPP P+ + + EG +TL
Sbjct: 83 LRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPP----LPSLNPGPALEEGQGLTLAA 138
Query: 112 KCAASGSPKPNITWRRE 128
C A GSP P++TW E
Sbjct: 139 SCTAEGSPAPSVTWDTE 155
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKS--QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLK 112
L I V +SD G Y C N + G L+V + P I P + ++ EG L
Sbjct: 64 LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKII--EGLKAVLP 121
Query: 113 CAASGSPKPNITW 125
C G+PKP+++W
Sbjct: 122 CTTMGNPKPSVSW 134
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQG 136
++ +R SN TL C +G PKP + W R+G E+IA G
Sbjct: 11 NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG 47
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 49 ETKAWY--LHIREVRESDRGWYMCQV-NTDPMKSQVGYLEVVVPPDILDYPTSTDM---- 101
E K Y L I V + D Y + N S LEV VP I T M
Sbjct: 54 EFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH 113
Query: 102 VIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ 139
+R G V++K SG P P ITW++ G+ + NG
Sbjct: 114 ALR-GEVVSIKIPFSGKPDPVITWQK--GQDLIDNNGH 148
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQG 136
++ +R SN TL C +G PKP + W R+G E+IA G
Sbjct: 13 NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG 49
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 49 ETKAWY--LHIREVRESDRGWYMCQV-NTDPMKSQVGYLEVVVPPDILDYPTSTDM---- 101
E K Y L I V + D Y + N S LEV VP I T M
Sbjct: 56 EFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH 115
Query: 102 VIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ 139
+R G V++K SG P P ITW++ G+ + NG
Sbjct: 116 ALR-GEVVSIKIPFSGKPDPVITWQK--GQDLIDNNGH 150
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQG 136
++ +R SN TL C +G PKP + W R+G E+IA G
Sbjct: 13 NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG 49
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 49 ETKAWY--LHIREVRESDRGWYMCQV-NTDPMKSQVGYLEVVVPPDILDYPTSTDM---- 101
E K Y L I V + D Y + N S LEV VP I T M
Sbjct: 56 EFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH 115
Query: 102 VIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ 139
+R G V++K SG P P ITW++ G+ + NG
Sbjct: 116 ALR-GEVVSIKIPFSGKPDPVITWQK--GQDLIDNNGH 150
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 95 YP---TSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDF 142
YP S+ MV+R G ++ L+C ASG P P+I W ++GG+L + E+F
Sbjct: 224 YPQGTASSQMVLR-GMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENF 273
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKS--QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLK 112
L I V E D G Y C + ++ M S + V P LD P ++++ G + L
Sbjct: 277 LRITNVSEEDSGEYFC-LASNKMGSIRHTISVRVKAAPYWLDEPK--NLILAPGEDGRLV 333
Query: 113 CAASGSPKPNITWRREGGEL 132
C A+G+PKP + W G L
Sbjct: 334 CRANGNPKPTVQWMVNGEPL 353
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 85 EVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRR 127
E+ PP I ++ D ++ N+ ++C A G+P P+ W R
Sbjct: 12 ELTQPPTITKQ-SAKDHIVDPRDNILIECEAKGNPAPSFHWTR 53
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 26/114 (22%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDIL---------DYPTSTDMVIRE 105
L+I +V +SD G Y C V + V +V+ PP L +Y ++ E
Sbjct: 158 LYIAKVEKSDVGNYTCVVT-----NTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPE 212
Query: 106 ------GSNVTLKCAASGSPKPNITWRREGGELIA------QGNGQEDFPFFKR 147
G+ V L+C A G+P P I WRR G+ IA + NG + P F++
Sbjct: 213 TVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQ 266
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKSQV-GYLEVVVPPDILDYPTSTDMVIREGSNVTLKC 113
L I ++ D G Y C K+ G L P+ + + + E +V +C
Sbjct: 259 LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEE--SVFWEC 316
Query: 114 AASGSPKPNITWRREGGELIAQ 135
A+G PKP W + G L+ +
Sbjct: 317 KANGRPKPTYRWLKNGDPLLTR 338
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 105 EGSNVTLKCAASGSPKPNITWRREGGEL 132
E V L C G+PKP+I W+ G ++
Sbjct: 21 EEKKVKLSCEVKGNPKPHIRWKLNGTDV 48
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 26/114 (22%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDIL---------DYPTSTDMVIRE 105
L+I +V +SD G Y C V + V +V+ PP L +Y ++ E
Sbjct: 159 LYIAKVEKSDVGNYTCVVT-----NTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPE 213
Query: 106 ------GSNVTLKCAASGSPKPNITWRREGGELIA------QGNGQEDFPFFKR 147
G+ V L+C A G+P P I WRR G+ IA + NG + P F++
Sbjct: 214 TVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQ 267
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKSQV-GYLEVVVPPDILDYPTSTDMVIREGSNVTLKC 113
L I ++ D G Y C K+ G L P+ + + + E +V +C
Sbjct: 260 LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEE--SVFWEC 317
Query: 114 AASGSPKPNITWRREGGELIAQ 135
A+G PKP W + G L+ +
Sbjct: 318 KANGRPKPTYRWLKNGDPLLTR 339
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 105 EGSNVTLKCAASGSPKPNITWRREGGEL 132
E V L C G+PKP+I W+ G ++
Sbjct: 22 EEKKVKLSCEVKGNPKPHIRWKLNGTDV 49
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELI 133
PP I+++P+ D+++ +G TL C A G P P I W + GGE +
Sbjct: 9 PPRIVEHPS--DLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERV 50
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 53 WYLHIREVRES--DRGWYMCQVNTDPMKSQVGY---LEVVVPPDILDYPTSTDMVIREGS 107
++L I R+S D G Y+C V + + V + LEV + D +D+++ G
Sbjct: 70 FFLRIVHGRKSRPDEGVYVC-VARNYLGEAVSHDASLEVAILRDDFRQ-NPSDVMVAVGE 127
Query: 108 NVTLKC-AASGSPKPNITWRREGGEL 132
++C G P+P I+W+++G L
Sbjct: 128 PAVMECQPPRGHPEPTISWKKDGSPL 153
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELI 133
PP I+++P+ D+++ +G TL C A G P P I W + GGE +
Sbjct: 9 PPRIVEHPS--DLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERV 50
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 86 VVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPF 144
V VPP + ++ + +VTL C A G P+P +TW ++ GE I Q + +E + F
Sbjct: 8 VNVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKD-GEPIEQEDNEEKYSF 65
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 15/128 (11%)
Query: 14 MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWY----------LHIREVRES 63
+A+ + W DT+ ++ H T+ G +S A + L ++ VR +
Sbjct: 27 LAQLNLIWQLTDTKQLV----HSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT 82
Query: 64 DRGWYMCQVNTDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAA-SGSPKPN 122
D G Y C V+ S L+V P + +R G+ VT+ C++ G P+
Sbjct: 83 DEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAE 142
Query: 123 ITWRREGG 130
+ W+ G
Sbjct: 143 VFWKDGQG 150
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 88 VPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ 139
+PP I P+ D+ I EG +T+ CA +G P P +TW G ++ +Q G+
Sbjct: 6 IPPKIEALPS--DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGR 55
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 88 VPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ 139
+PP I P+ D+ I EG +T+ CA +G P P +TW G ++ +Q G+
Sbjct: 4 IPPKIEALPS--DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGR 53
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 90 PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREG 129
P I+++PT D+V+++ TL C G P+P I W ++G
Sbjct: 10 PRIIEHPT--DLVVKKNEPATLNCKVEGKPEPTIEWFKDG 47
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 90 PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREG 129
P I+++PT D+V+++ TL C G P+P I W ++G
Sbjct: 10 PRIIEHPT--DLVVKKNEPATLNCKVEGKPEPTIEWFKDG 47
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKSQVG-YLEVVVPPDILDYPTSTDMVIREGSNVTLKC 113
LHI++V+ SD G Y C+ + Q YL++ P + T EG+ + + C
Sbjct: 65 LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFIS--NQTIYYSWEGNPINISC 122
Query: 114 AASGSPKPNITWRRE 128
+P +I WRR+
Sbjct: 123 DVKSNPPASIHWRRD 137
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 105 EGSNVTLKCAASGSPKPNITWRR 127
E VTL C A G P P ITW+R
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKR 36
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKSQVG-YLEVVVPPDILDYPTSTDMVIREGSNVTLKC 113
LHI++V+ SD G Y C+ + Q YL++ P + T EG+ + + C
Sbjct: 65 LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFIS--NQTIYYSWEGNPINISC 122
Query: 114 AASGSPKPNITWRRE 128
+P +I WRR+
Sbjct: 123 DVKSNPPASIHWRRD 137
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 105 EGSNVTLKCAASGSPKPNITWRR 127
E VTL C A G P P ITW+R
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKR 36
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 5/111 (4%)
Query: 40 NHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD----PMKSQVGYLEVVVPPDILDY 95
+HRIG W + + V SD+G Y C V + Q+ +E IL
Sbjct: 61 DHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQA 120
Query: 96 PTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFK 146
+ + GSNV C P+P+I W + E+ G ++ P+ +
Sbjct: 121 GLPANKTVALGSNVEFMCKVYSDPQPHIQWLKH-IEVNGSKIGPDNLPYVQ 170
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 109 VTLKCAASGSPKPNITWRREGGEL 132
V KC +SG+P+P + W + G E
Sbjct: 35 VKFKCPSSGTPQPTLRWLKNGKEF 58
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 5/111 (4%)
Query: 40 NHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD----PMKSQVGYLEVVVPPDILDY 95
+HRIG W + + V SD+G Y C V + Q+ +E IL
Sbjct: 60 DHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQA 119
Query: 96 PTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFK 146
+ + GSNV C P+P+I W + E+ G ++ P+ +
Sbjct: 120 GLPANKTVALGSNVEFMCKVYSDPQPHIQWLKH-IEVNGSKIGPDNLPYVQ 169
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 109 VTLKCAASGSPKPNITWRREGGEL 132
V KC +SG+P P + W + G E
Sbjct: 34 VKFKCPSSGTPNPTLRWLKNGKEF 57
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 5/111 (4%)
Query: 40 NHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD----PMKSQVGYLEVVVPPDILDY 95
+HRIG W + + V SD+G Y C V + Q+ +E IL
Sbjct: 60 DHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQA 119
Query: 96 PTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFK 146
+ + GSNV C P+P+I W + E+ G ++ P+ +
Sbjct: 120 GLPANKTVALGSNVEFMCKVYSDPQPHIQWLKH-IEVNGSKIGPDNLPYVQ 169
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 109 VTLKCAASGSPKPNITWRREGGEL 132
V KC +SG+P+P + W + G E
Sbjct: 34 VKFKCPSSGTPQPTLRWLKNGKEF 57
>pdb|4FS0|A Chain A, Crystal Structure Of Mutant F136d Of Mouse Nectin-2
Extracellular Fragment D1-D2
Length = 225
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 46 THSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG--YLEVVVPPDILDYPTSTDMVI 103
T+++ + L R +R D G Y C+ TDP ++ G +L V+ P+ ++ + ++ I
Sbjct: 76 TNADLRDATLAFRGLRVEDEGNYTCEFATDPNGTRRGVTWLRVIAQPE--NHAEAQEVTI 133
Query: 104 REGSNVTLKCAASGS-PKPNITW 125
S +C ++G P ITW
Sbjct: 134 GPQSVAVARCVSTGGRPPARITW 156
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Query: 20 AWLRVDTQTILTIQTHVI-----TKNH-RIGVTHSETKAWYLHIREVRESDRGWYMCQVN 73
+ L V Q LT +H + TKN + T I + R D G Y C +
Sbjct: 17 SLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYH 76
Query: 74 TDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWR-REGG-- 130
+EV PDI + S + EG + + C + G P P WR +E G
Sbjct: 77 FVSAPKANATIEVKAAPDITGHKRSENK--NEGQDAMMYCKSVGYPHPEWMWRKKENGVF 134
Query: 131 ELIAQGNGQ 139
E I+ +G+
Sbjct: 135 EEISNSSGR 143
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREG 129
PP+I+ P + +R G + CAA G P P+I WR+ G
Sbjct: 6 PPEIIRKPQ--NQGVRVGGVASFYCAARGDPPPSIVWRKNG 44
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 102 VIREGSNVTLKCAASGSPKPNITW 125
VI G V + C A G+P PNI W
Sbjct: 121 VIEVGHTVLMTCKAIGNPTPNIYW 144
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREG 129
PP+I+ P + +R G + CAA G P P+I WR+ G
Sbjct: 8 PPEIIRKPQ--NQGVRVGGVASFYCAARGDPPPSIVWRKNG 46
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 102 VIREGSNVTLKCAASGSPKPNITW 125
VI G V + C A G+P PNI W
Sbjct: 123 VIEVGHTVLMTCKAIGNPTPNIYW 146
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 55 LHIREVRESDRGWYMCQVN----TDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVT 110
L I + +S G Y C + T +++ E VPP P S D+ + G + T
Sbjct: 159 LQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLAL--GESGT 216
Query: 111 LKCAASGSPKPNITWRREGGELIAQGN 137
KC +G+ ITW ++ E+ GN
Sbjct: 217 FKCHVTGTAPIKITWAKDNREIRPGGN 243
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 48 SETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGYLEVVVPPDILDYPTSTDMVIREG 106
SE +HI V +D G Y C+ + D + VG + + PP + + V+ G
Sbjct: 435 SENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVV--G 492
Query: 107 SNVTLKCAASGSPKPNITWRREGGELIAQGN 137
V L+ G+ ++ W ++ GE++ + +
Sbjct: 493 EEVQLQATIEGAEPISVAWFKDKGEIVRESD 523
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 55 LHIREVRESDRGWYMCQV-NTDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKC 113
L + + D G Y C+ N S L+V PP P + + +G++V L+C
Sbjct: 349 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL--KGADVHLEC 406
Query: 114 AASGSPKPNITWRREGGEL 132
G+P ++W ++ EL
Sbjct: 407 ELQGTPPFQVSWHKDKREL 425
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 55 LHIREVRESDRGWYMCQVNT----DPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVT 110
L + +V + D G Y C + D +Q+G E PP + ++++ +
Sbjct: 255 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE---PPRFIK-KLEPSRIVKQDEHTR 310
Query: 111 LKCAASGSPKPNITWRREGGEL 132
+C GSP+ + W ++ E+
Sbjct: 311 YECKIGGSPEIKVLWYKDETEI 332
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 106 GSNVTLKCAASGSPKPNITWRREGGEL 132
G +TL+C G+P+ I W +E +L
Sbjct: 20 GEPITLQCKVDGTPEIRIAWYKEHTKL 46
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ 135
PP + P D + G + C A+G PKP +TW ++G ++ +Q
Sbjct: 6 PPRFIKEPK--DQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ 50
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 102 VIREGSNVTLKCAASGSPKPNITWRRE 128
V+ T+ CAASG+P P ITW ++
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKD 145
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ 135
PP + P D + G + C A+G PKP +TW ++G ++ +Q
Sbjct: 6 PPRFIKEPK--DQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ 50
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 102 VIREGSNVTLKCAASGSPKPNITWRRE 128
V+ T+ CAASG+P P ITW ++
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKD 145
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ 135
PP + P D + G + C A+G PKP +TW ++G ++ +Q
Sbjct: 6 PPRFIKEPK--DQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ 50
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 49 ETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG-----YLEVV-VPPDILDYPTSTDMV 102
+ ++ L I E+D+G Y C V T+ + Y+ V V P P S +
Sbjct: 160 QLRSGALQIESSEETDQGKYEC-VATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHE-- 216
Query: 103 IREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFP 143
I G NV + C A GSP P + W + +L ++D P
Sbjct: 217 IMPGGNVNITCVAVGSPMPYVKWMQGAEDLTP----EDDMP 253
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 102 VIREGSNVTLKCAASGSPKPNITWRRE 128
V+ T+ CAASG+P P ITW ++
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKD 145
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 76 PMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIA 134
PMK+ G + PP L +P +V G+ LKC G P P + W + G +L A
Sbjct: 2 PMKASSG--DQGSPPCFLRFPRPVRVV--SGAEAELKCVVLGEPPPVVVWEKGGQQLAA 56
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ 135
PP + P D + G + C A+G PKP +TW ++G ++ +Q
Sbjct: 6 PPVFIKKPV--DQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ 50
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 102 VIREGSNVTLKCAASGSPKPNITWRRE 128
V+ T+ CAASG+P P ITW ++
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKD 145
>pdb|4FMK|A Chain A, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2
pdb|4FN0|A Chain A, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2, 2nd Crystal Form
pdb|4FN0|B Chain B, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2, 2nd Crystal Form
pdb|4FN0|C Chain C, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2, 2nd Crystal Form
Length = 225
Score = 33.5 bits (75), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 46 THSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG--YLEVVVPPDILDYPTSTDMVI 103
T+++ + L R +R D G Y C+ T P ++ G +L V+ P+ ++ + ++ I
Sbjct: 76 TNADLRDATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPE--NHAEAQEVTI 133
Query: 104 REGSNVTLKCAASGS-PKPNITW 125
S +C ++G P ITW
Sbjct: 134 GPQSVAVARCVSTGGRPPARITW 156
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 33.5 bits (75), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREG 129
PP IL P + + + +G+ + LKC A+G P P I+W +EG
Sbjct: 8 PPIILQGPANQTLAV-DGTAL-LKCKATGDPLPVISWLKEG 46
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 33.5 bits (75), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 18/98 (18%)
Query: 41 HRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDILD------ 94
HRIG + W L + V SDRG Y C V +++ G + D+L+
Sbjct: 168 HRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV-----ENKFGSIRQTYTLDVLERSPHRP 222
Query: 95 -----YPTSTDMVIREGSNVTLKCAASGSPKPNITWRR 127
P + V+ GS+V C +P+I W +
Sbjct: 223 ILQAGLPANQTAVL--GSDVEFHCKVYSDAQPHIQWLK 258
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 101 MVIREGSNVTLKCAASGSPKPNITWRREGGEL 132
+ + + V +C A+G+P P+I+W + G E
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREF 164
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 33.5 bits (75), Expect = 0.058, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 55 LHIREVRESDRGWYMC--QVNTDPMKSQVGYLEVVVPPD--ILDYPTSTDMVIREGSNVT 110
L + V +D Y+C Q + +S L+V+ PD I+ P S+ + G+N+
Sbjct: 522 LTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYL---SGANLN 578
Query: 111 LKCAASGSPKPNITWRREG 129
L C ++ +P P +WR G
Sbjct: 579 LSCHSASNPSPQYSWRING 597
Score = 27.3 bits (59), Expect = 3.5, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 16/95 (16%)
Query: 55 LHIREVRESDRGWYMCQV-------NTDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGS 107
L + V +D G Y C + ++DP+ V Y P D P+ T R G
Sbjct: 344 LTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLY----GPDDPTISPSYT--YYRPGV 397
Query: 108 NVTLKCAASGSPKPNITWRREGGELIAQGNGQEDF 142
N++L C A+ +P +W +G Q + QE F
Sbjct: 398 NLSLSCHAASNPPAQYSWLIDGN---IQQHTQELF 429
Score = 26.9 bits (58), Expect = 5.4, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 55 LHIREVRESDRGWYMCQVNT--DPMKSQVGYLEVVVPPDILDYPTST--DMVIREGSNVT 110
L + V +D Y C+ +S L V+ PD PT + + R G N+
Sbjct: 166 LTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDA---PTISPLNTSYRSGENLN 222
Query: 111 LKCAASGSPKPNITWRREG 129
L C A+ +P +W G
Sbjct: 223 LSCHAASNPPAQYSWFVNG 241
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 18/96 (18%)
Query: 41 HRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDILD------ 94
HRIG + W L + V SDRG Y C V +++ G + D+L+
Sbjct: 60 HRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV-----ENKFGSIRQTYTLDVLERSPHRP 114
Query: 95 -----YPTSTDMVIREGSNVTLKCAASGSPKPNITW 125
P + V+ GS+V C +P+I W
Sbjct: 115 ILQAGLPANQTAVL--GSDVEFHCKVYSDAQPHIQW 148
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 101 MVIREGSNVTLKCAASGSPKPNITWRREGGEL 132
+ + + V +C A+G+P P+I+W + G E
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSISWLKNGREF 56
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 19 VAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK 78
V+W R D Q I T + + ++ S+ +A L I V +++ G Y + T+
Sbjct: 37 VSWFR-DGQVIST------STLPGVQISFSDGRAK-LTIPAVTKANSGRYSLKA-TNGSG 87
Query: 79 SQVGYLEVVV-----PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGEL 132
E++V PP+ + S M +R+GS V L+ +G P P + + R+G E+
Sbjct: 88 QATSTAELLVKAETAPPNFVQRLQS--MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEI 144
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 100 DMVIREGSNVTLKCAASGSPKPNITWRREG 129
+V+ EGS T + SG P P ++W R+G
Sbjct: 14 SVVVLEGSTATFEAHISGFPVPEVSWFRDG 43
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 33.5 bits (75), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 19 VAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV-NTDPM 77
V+W R D Q I T + + ++ S+ +A L I V +++ G Y + N
Sbjct: 37 VSWFR-DGQVIST------STLPGVQISFSDGRAK-LTIPAVTKANSGRYSLKATNGSGQ 88
Query: 78 KSQVGYLEV---VVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGEL 132
+ L V PP+ + S M +R+GS V L+ +G P P + + R+G E+
Sbjct: 89 ATSTAELLVKAETAPPNFVQRLQS--MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEI 144
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 100 DMVIREGSNVTLKCAASGSPKPNITWRREG 129
+V+ EGS T + SG P P ++W R+G
Sbjct: 14 SVVVLEGSTATFEAHISGFPVPEVSWFRDG 43
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 33.1 bits (74), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 92 ILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRT 148
IL P S M + EG + C G P P +TW R+G L Q +K T
Sbjct: 17 ILTKPRS--MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST 71
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 38/97 (39%)
Query: 41 HRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDILDYPTSTD 100
RI V ++ + L I D G Y C V + + V + ++ T
Sbjct: 50 QRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTP 109
Query: 101 MVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGN 137
+EG + + C S P I W+ +G ++I + +
Sbjct: 110 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD 146
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 33.1 bits (74), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 72 VNTDPMKSQVGYLEVVV--PPDILDYPTST--DMVIREGSNVTLKCAASGSPKPNITWRR 127
+N + ++++ +LE V P + Y T T DM + EGS C G P P + W +
Sbjct: 18 INANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFK 77
Query: 128 E 128
+
Sbjct: 78 D 78
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 33.1 bits (74), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
Query: 46 THSETKAWYLHIREVRESDRGWYMCQVNTDPMKS------QVGYLEVVVPPDILDYPTST 99
++S + ++ D+G Y+C K Q+ LE V P + T
Sbjct: 618 SNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQT 677
Query: 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELI 133
+ G ++ + C ASG+P P I W ++ L+
Sbjct: 678 TSI---GESIEVSCTASGNPPPQIMWFKDNETLV 708
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDILDYPTSTDMVIRE--GSNVTLK 112
L I V SD+G Y C ++ M + V + + + + ++ G V +
Sbjct: 292 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIP 351
Query: 113 CAASGSPKPNITWRREG 129
G P P I W + G
Sbjct: 352 AKYLGYPPPEIKWYKNG 368
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 33.1 bits (74), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 14/94 (14%)
Query: 37 ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV--NTDPMKSQVGYLEVVVPPDILD 94
+++ H IG +L ++ V SD G Y CQV + SQ +L V P
Sbjct: 53 VSEQHWIG---------FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTV 103
Query: 95 YPTSTDMVIREGSNVTLKCAASGSPKP-NITWRR 127
P D+ + + L C A G P+P I W R
Sbjct: 104 EP--KDLAVPPNAPFQLSCEAVGPPEPVTIVWWR 135
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 101 MVIREGSNVTLKCAASGSPKPNITWRREG 129
+ + +G V L C+ G +P+I W ++G
Sbjct: 12 LTVSQGQPVKLNCSVEGXEEPDIQWVKDG 40
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 33.1 bits (74), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 103 IREGSNVTLKCAASGSPKPNITWRREGGEL 132
I EG VT C +G+PKP I W ++G ++
Sbjct: 19 IFEGMPVTFTCRVAGNPKPKIYWFKDGKQI 48
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 33.1 bits (74), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 92 ILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRT 148
IL P S M + EG + C G P P +TW R+G L Q +K T
Sbjct: 11 ILTKPRS--MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST 65
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIA 134
PP L +P +V G+ LKC G P P + W + G +L A
Sbjct: 14 PPCFLRFPRPVRVV--SGAEAELKCVVLGEPPPVVVWEKGGQQLAA 57
>pdb|2FBO|J Chain J, Crystal Structure Of The Two Tandem V-Type Regions Of
Vcbp3 (V-Region-Containing Chitin Binding Protein) To
1.85 A
Length = 250
Score = 32.7 bits (73), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKSQVGY------LEVV--VPPDILDYPTSTDMVIREG 106
L + V D G Y CQV ++++ G L+V P + + T+ + + EG
Sbjct: 92 LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEG 151
Query: 107 SNVTLKCAASGSPKPNITW 125
+++T+ C + N+TW
Sbjct: 152 NDITMTCPCTDCANANVTW 170
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 32.7 bits (73), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 72 VNTDPMKSQVGYLEVVV--PPDILDYPTST--DMVIREGSNVTLKCAASGSPKPNITWRR 127
+N + ++++ +LE V P + Y T T DM + EGS C G P P + W +
Sbjct: 18 INANKVENEDAFLEEVAEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFK 77
Query: 128 E 128
+
Sbjct: 78 D 78
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 32.7 bits (73), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 19/90 (21%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMK--SQVGYLEVVVPPD---------------ILDYPT 97
L V D G+Y+C+VN + SQ L+V P+ I PT
Sbjct: 67 LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPT 126
Query: 98 STDMVIREGSNVTLKCAASGSPKPNITWRR 127
S ++ GS + L+C A GSP P+ W +
Sbjct: 127 SQKLM--PGSTLVLQCVAVGSPIPHYQWFK 154
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 32.7 bits (73), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 103 IREGSNVTLKCAASGSPKPNITWRREGGEL 132
I EG VT C +G+PKP I W ++G ++
Sbjct: 20 IFEGMPVTFTCRVAGNPKPKIYWFKDGKQI 49
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKSQVGY-LEVVVPPDILDYPTSTDMVIREGSNVTLKC 113
LH+ ++ ++ G Y V+ + + + + + V P+IL Y D ++ N L+C
Sbjct: 377 LHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTY----DRLV----NGMLQC 428
Query: 114 AASGSPKPNITW 125
A+G P+P I W
Sbjct: 429 VAAGFPEPTIDW 440
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKSQVGY-LEVVVPPDILDYPTSTDMVIREGSNVTLKC 113
LH+ ++ ++ G Y V+ + + + + + V P+IL Y D ++ N L+C
Sbjct: 352 LHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTY----DRLV----NGMLQC 403
Query: 114 AASGSPKPNITW 125
A+G P+P I W
Sbjct: 404 VAAGFPEPTIDW 415
>pdb|1I8L|A Chain A, Human B7-1CTLA-4 Co-Stimulatory Complex
pdb|1I8L|B Chain B, Human B7-1CTLA-4 Co-Stimulatory Complex
Length = 208
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 57 IREVRESDRGWYMCQV---NTDPMKSQVGYLEVVVPPDILDYPTST--DMVIREGSNVTL 111
I +R SD G Y C V D K + +L V D+PT + D I + +
Sbjct: 69 ILALRPSDEGTYECVVLKYEKDAFKRE--HLAEVTLSVKADFPTPSISDFEIPTSNIRRI 126
Query: 112 KCAASGS-PKPNITWRREGGELIA 134
C+ SG P+P+++W G EL A
Sbjct: 127 ICSTSGGFPEPHLSWLENGEELNA 150
>pdb|1DR9|A Chain A, Crystal Structure Of A Soluble Form Of B7-1 (Cd80)
Length = 201
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 57 IREVRESDRGWYMCQV---NTDPMKSQVGYLEVVVPPDILDYPTST--DMVIREGSNVTL 111
I +R SD G Y C V D K + +L V D+PT + D I + +
Sbjct: 69 ILALRPSDEGTYECVVLKYEKDAFKRE--HLAEVTLSVKADFPTPSISDFEIPTSNIRRI 126
Query: 112 KCAASGS-PKPNITWRREGGELIA 134
C+ SG P+P+++W G EL A
Sbjct: 127 ICSTSGGFPEPHLSWLENGEELNA 150
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 100 DMVIREGSNVTLKCAASGSPKPNITWRREG 129
D + EG + L+C+ G+P P ITW G
Sbjct: 20 DCAVIEGQDFVLQCSVRGTPVPRITWLLNG 49
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELI 133
D+ + G L C G P P+I W R G ELI
Sbjct: 16 DVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELI 49
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 102 VIREGSNVTLKCAASGSPKPNITWRRE 128
V+ +G T+ CAA G+P P I+W ++
Sbjct: 120 VVEKGRTATMLCAAGGNPDPEISWFKD 146
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ 135
D G + C A+G PKP ITW ++G ++ +Q
Sbjct: 16 DQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQ 51
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 90 PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREG 129
P L P D+ ++EG + C SG P P+++W+ +G
Sbjct: 10 PHFLQAPG--DLTVQEGKLCRMDCKVSGLPTPDLSWQLDG 47
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREG 129
PP I P + + + +G+ V L C A+GSP P I WR++G
Sbjct: 8 PPVIRQGPVNQTVAV-DGTFV-LSCVATGSPVPTILWRKDG 46
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 55 LHIREVRESDRGWYMCQV-NTDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKC 113
L + + D G Y C+ N S L+V PP P + + +G++V L+C
Sbjct: 157 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL--KGADVHLEC 214
Query: 114 AASGSPKPNITWRREGGEL 132
G+P ++W ++ EL
Sbjct: 215 ELQGTPPFQVSWHKDKREL 233
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 86 VVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGN 137
+ PP P S D+ + G + T KC +G+ ITW ++ E+ GN
Sbjct: 2 AMAPPFFDLKPVSVDLAL--GESGTFKCHVTGTAPIKITWAKDNREIRPGGN 51
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 55 LHIREVRESDRGWYMCQVNT----DPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVT 110
L + +V + D G Y C + D +Q+G E PP + ++++ +
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE---PPRFIK-KLEPSRIVKQDEHTR 118
Query: 111 LKCAASGSPKPNITWRREGGEL 132
+C GSP+ + W ++ E+
Sbjct: 119 YECKIGGSPEIKVLWYKDETEI 140
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 55 LHIREVRESDRGWYMCQV-NTDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKC 113
L + + D G Y C+ N S L+V PP P + + +G++V L+C
Sbjct: 157 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL--KGADVHLEC 214
Query: 114 AASGSPKPNITWRREGGEL 132
G+P ++W ++ EL
Sbjct: 215 ELQGTPPFQVSWHKDKREL 233
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 86 VVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGN 137
+ PP P S D+ + G + T KC +G+ ITW ++ E+ GN
Sbjct: 2 AMAPPFFDLKPVSVDLAL--GESGTFKCHVTGTAPIKITWAKDNREIRPGGN 51
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 55 LHIREVRESDRGWYMCQVNT----DPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVT 110
L + +V + D G Y C + D +Q+G V PP + ++++ +
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG---VQAPPRFIK-KLEPSRIVKQDEHTR 118
Query: 111 LKCAASGSPKPNITWRREGGEL 132
+C GSP+ + W ++ E+
Sbjct: 119 YECKIGGSPEIKVLWYKDETEI 140
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 106 GSNVTLKCAASGSPKPNITWRREGGELIAQ 135
G + C A+G PKP ITW ++G ++ +Q
Sbjct: 21 GGVASFVCQATGEPKPRITWMKKGKKVSSQ 50
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 19/87 (21%)
Query: 55 LHIREVR-ESDRGWYMC-------QVNTDPMKSQVGYLEVVVPPDILDYPTSTDM----- 101
L I+ +R + D Y C ++NT S + E +PP +P S DM
Sbjct: 65 LRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVL--EEEQLPPG---FP-SIDMGPQLK 118
Query: 102 VIREGSNVTLKCAASGSPKPNITWRRE 128
V+ + T+ CAA G+P P I+W ++
Sbjct: 119 VVEKARTATMLCAAGGNPDPEISWFKD 145
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 37 ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV-NTDPMKSQVGYLEVVV-----PP 90
+ HRIG + W L + V SD+G Y C V N + +L+VV P
Sbjct: 52 FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPI 111
Query: 91 DILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFK 146
P + V+ G +V C +P+I W + E G + P+ K
Sbjct: 112 LQAGLPANASTVV--GGDVEFVCKVYSDAQPHIQWIKH-VEKNGSKYGPDGLPYLK 164
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 109 VTLKCAASGSPKPNITWRREGGEL 132
V +C A G+P P + W + G E
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEF 52
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 37 ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV-NTDPMKSQVGYLEVVV-----PP 90
+ HRIG + W L + V SD+G Y C V N + +L+VV P
Sbjct: 50 FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPI 109
Query: 91 DILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFK 146
P + V+ G +V C +P+I W + E G + P+ K
Sbjct: 110 LQAGLPANASTVV--GGDVEFVCKVYSDAQPHIQWIKH-VEKNGSKYGPDGLPYLK 162
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 109 VTLKCAASGSPKPNITWRREGGEL 132
V +C A G+P P + W + G E
Sbjct: 27 VKFRCPAGGNPMPTMRWLKNGKEF 50
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 37 ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV-NTDPMKSQVGYLEVVV-----PP 90
+ HRIG + W L + V SD+G Y C V N + +L+VV P
Sbjct: 51 FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPI 110
Query: 91 DILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFK 146
P + V+ G +V C +P+I W + E G + P+ K
Sbjct: 111 LQAGLPANASTVV--GGDVEFVCKVYSDAQPHIQWIKH-VEKNGSKYGPDGLPYLK 163
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 102 VIREGSNVTLKCAASGSPKPNITWRREGGEL 132
+ + V +C A G+P P + W + G E
Sbjct: 21 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 51
>pdb|3MJG|X Chain X, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
pdb|3MJG|Y Chain Y, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
Length = 289
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 102 VIREGSNVTLKCAASGSPKPNITW---RREGGELI 133
V+R+G N+TL C G+ N W R+E G L+
Sbjct: 192 VVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLV 226
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 37 ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV-NTDPMKSQVGYLEVVV-----PP 90
+ HRIG + W L + V SD+G Y C V N + +L+VV P
Sbjct: 52 FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPI 111
Query: 91 DILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFK 146
P + V+ G +V C +P+I W + E G + P+ K
Sbjct: 112 LQAGLPANASTVV--GGDVEFVCKVYSDAQPHIQWIKH-VEKNGSKYGPDGLPYLK 164
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 102 VIREGSNVTLKCAASGSPKPNITWRREGGEL 132
+ + V +C A G+P P + W + G E
Sbjct: 22 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 52
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 37 ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV-NTDPMKSQVGYLEVVV-----PP 90
+ HRIG + W L + V SD+G Y C V N + +L+VV P
Sbjct: 52 FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPI 111
Query: 91 DILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFK 146
P + V+ G +V C +P+I W + E G + P+ K
Sbjct: 112 LQAGLPANASTVV--GGDVEFVCKVYSDAQPHIQWIKH-VEKNGSKYGPDGLPYLK 164
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 102 VIREGSNVTLKCAASGSPKPNITWRREGGEL 132
+ + V +C A G+P P + W + G E
Sbjct: 22 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 52
>pdb|3M45|A Chain A, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|B Chain B, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|C Chain C, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|D Chain D, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
Length = 108
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 39 KNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPP 90
+++RI + + + + +V SD G Y C + T P+K+ YL V+ P
Sbjct: 57 RDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVP 108
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 37 ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK-SQVGYLEVVV-----PP 90
+ HRIG + W L + V SD+G Y C V + + +L+VV P
Sbjct: 60 FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPI 119
Query: 91 DILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFK 146
P + V+ G +V C +P+I W + E G + P+ K
Sbjct: 120 LQAGLPANASTVV--GGDVEFVCKVYSDAQPHIQWIKH-VEKNGSKYGPDGLPYLK 172
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 109 VTLKCAASGSPKPNITWRREGGEL 132
V +C A G+P P + W + G E
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEF 60
>pdb|3PL6|C Chain C, Structure Of Autoimmune Tcr Hy.1b11 In Complex With
Hla-Dq1 And Mbp 85-99
Length = 206
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 27 QTILTIQTHV-ITKNHRIGVTHSET-KAWYLHIREVRESDRGWYMCQVNT 74
Q I+ I+++V K+ RI VT ++T K + LHI E + D Y C ++
Sbjct: 44 QLIIDIRSNVGEKKDQRIAVTLNKTAKHFSLHITETQPEDSAVYFCAASS 93
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 37 ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK-SQVGYLEVVV-----PP 90
+ HRIG + W L + V SD+G Y C V + + +L+VV P
Sbjct: 60 FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPI 119
Query: 91 DILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFK 146
P + V+ G +V C +P+I W + E G + P+ K
Sbjct: 120 LQAGLPANASTVV--GGDVEFVCKVYSDAQPHIQWIKH-VEKNGSKYGPDGLPYLK 172
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 109 VTLKCAASGSPKPNITWRREGGEL 132
V +C A G+P P + W + G E
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEF 60
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPP--DILDYPTSTDMVIREGSNVTLK 112
L I++ D G Y+C VN V + V P +D PT T + G
Sbjct: 278 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT---VDFGRPAVFT 334
Query: 113 CAASGSPKPNITWRREG 129
C +G+P ++W ++G
Sbjct: 335 CQYTGNPIKTVSWMKDG 351
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
Query: 80 QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIA----- 134
Q G + + P + +D+ ST ++C ASG+P P I W R G +
Sbjct: 7 QKGPVFLKEPTNRIDFSNST--------GAEIECKASGNPMPEIIWIRSDGTAVGDVPGL 58
Query: 135 ---QGNGQEDFPFFK 146
+G+ FP F+
Sbjct: 59 RQISSDGKLVFPPFR 73
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPP--DILDYPTSTDMVIREGSNVTLK 112
L I++ D G Y+C VN V + V P +D PT T + G
Sbjct: 272 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT---VDFGRPAVFT 328
Query: 113 CAASGSPKPNITWRREG 129
C +G+P ++W ++G
Sbjct: 329 CQYTGNPIKTVSWMKDG 345
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
Query: 80 QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIA----- 134
Q G + + P + +D+ ST ++C ASG+P P I W R G +
Sbjct: 1 QKGPVFLKEPTNRIDFSNST--------GAEIECKASGNPMPEIIWIRSDGTAVGDVPGL 52
Query: 135 ---QGNGQEDFPFFK 146
+G+ FP F+
Sbjct: 53 RQISSDGKLVFPPFR 67
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPP--DILDYPTSTDMVIREGSNVTLK 112
L I++ D G Y+C VN V + V P +D PT T + G
Sbjct: 275 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT---VDFGRPAVFT 331
Query: 113 CAASGSPKPNITWRREG 129
C +G+P ++W ++G
Sbjct: 332 CQYTGNPIKTVSWMKDG 348
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 16/66 (24%)
Query: 89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIA--------QGNGQE 140
P + +D+ ST ++C ASG+P P I W R G + +G+
Sbjct: 10 PTNRIDFSNST--------GAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 141 DFPFFK 146
FP F+
Sbjct: 62 VFPPFR 67
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIA 134
PP L P +V G+ LKC G P P + W + G +L A
Sbjct: 14 PPCFLRRPRPVRVV--SGAEAELKCVVLGEPPPVVVWEKGGQQLAA 57
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 102 VIREGSNVTLKCAASGSPKPNITWRRE 128
V+ T+ CAASG+P P ITW ++
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKD 145
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 97 TSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ 135
T D G + C A+G P+P I W ++G ++ Q
Sbjct: 12 TPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQ 50
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 9/116 (7%)
Query: 37 ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV-NTDPMKSQVGYLEVVV-----PP 90
+ HRIG + W L V SD+G Y C V N + +L+VV P
Sbjct: 52 FKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPI 111
Query: 91 DILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFK 146
P + V+ G +V C +P+I W + E G + P+ K
Sbjct: 112 LQAGLPANASTVV--GGDVEFVCKVYSDAQPHIQWIKH-VEKNGSKYGPDGLPYLK 164
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 102 VIREGSNVTLKCAASGSPKPNITWRREGGEL 132
+ + V +C A G+P P W + G E
Sbjct: 22 AVPAANTVKFRCPAGGNPXPTXRWLKNGKEF 52
>pdb|4DKD|C Chain C, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
Length = 292
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 96 PTSTDMVIREGSNVTLKCAASGS------PKPNITWRREGGELIAQGN 137
P+ ++V++ G+ VTL+C +GS P P+ T +G I N
Sbjct: 9 PSVPELVVKPGATVTLRCVGNGSVEWDGPPSPHWTLYSDGSSSILSTN 56
>pdb|1QSE|D Chain D, Structure Of Human A6-Tcr Bound To Hla-A2 Complexed With
Altered Htlv-1 Tax Peptide V7r
pdb|1QSF|D Chain D, Structure Of A6-Tcr Bound To Hla-A2 Complexed With Altered
Htlv-1 Tax Peptide Y8a
pdb|2GJ6|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-a2
With The Modified Htlv-1 Tax (y5k-4-[3-indolyl]-butyric
Acid) Peptide
pdb|3D39|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Modified Htlv-1 Tax (Y5(4-Fluorophenylalanine))
Peptide
pdb|3D3V|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Modified Htlv-1 Tax
(Y5(3,4-Difluorophenylalanine)) Peptide
pdb|3H9S|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Bound Tel1p Peptide
pdb|3PWP|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Bound Hud Peptide
pdb|3QFJ|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Modified Tax (Y5f) Peptide
Length = 200
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 55 LHIREVRESDRGWYMCQVNTDP-MKSQVGY-LEVVVPPDI 92
L IR+ + SD Y+C V TD K Q G +VVV PDI
Sbjct: 73 LLIRDSQPSDSATYLCAVTTDSWGKLQFGAGTQVVVTPDI 112
>pdb|1QRN|D Chain D, Crystal Structure Of Human A6 Tcr Complexed With Hla-A2
Bound To Altered Htlv-1 Tax Peptide P6a
Length = 200
Score = 30.0 bits (66), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 55 LHIREVRESDRGWYMCQVNTDP-MKSQVGY-LEVVVPPDI 92
L IR+ + SD Y+C V TD K Q G +VVV PDI
Sbjct: 73 LLIRDSQPSDSATYLCAVTTDSWGKLQFGAGTQVVVTPDI 112
>pdb|1AO7|D Chain D, Complex Between Human T-Cell Receptor, Viral Peptide
(Tax), And Hla-A 0201
Length = 204
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 55 LHIREVRESDRGWYMCQVNTDP-MKSQVGY-LEVVVPPDI 92
L IR+ + SD Y+C V TD K Q G +VVV PDI
Sbjct: 73 LLIRDSQPSDSATYLCAVTTDSWGKLQFGAGTQVVVTPDI 112
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 62/150 (41%), Gaps = 28/150 (18%)
Query: 1 MAARMLIEIGEMLMAESTVAWLRVDTQTILTIQTH---------------VITKNHRIGV 45
++ + LIE+ E + + ++W ++ ++ T+ H V+ KN+ +
Sbjct: 17 VSLKCLIEVNETI---TQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLND 73
Query: 46 THSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGY--LEVVVPPDILDYPTSTDMVI 103
+ + + SD G Y+C+ T P+ + + V+V P + ++
Sbjct: 74 A-------TITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLID 126
Query: 104 REGSNVTLKC-AASGSPKPNITWRREGGEL 132
V C AA+G P +I W + GE+
Sbjct: 127 GGNETVAAICIAATGKPVAHIDWEGDLGEM 156
>pdb|3QH3|A Chain A, The Crystal Structure Of Tcr A6
pdb|3QH3|C Chain C, The Crystal Structure Of Tcr A6
Length = 194
Score = 30.0 bits (66), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 55 LHIREVRESDRGWYMCQVNTDP-MKSQVGY-LEVVVPPDI 92
L IR+ + SD Y+C V TD K Q G +VVV PDI
Sbjct: 73 LLIRDSQPSDSATYLCAVTTDSWGKLQFGAGTQVVVTPDI 112
>pdb|2CDE|A Chain A, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
pdb|2CDE|C Chain C, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
pdb|2CDE|E Chain E, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
Length = 192
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 101 MVIREGSNVTLKCAASGSPKPNITWRRE 128
++I EG N TL+C + SP N+ W ++
Sbjct: 10 LIILEGKNCTLQCNYTVSPFSNLRWYKQ 37
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 17 STVAWLRVDTQ------TILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMC 70
S + W + DT TI+T + + ++TK LHI + SD Y+C
Sbjct: 30 SNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYIC 89
Query: 71 QVN 73
V+
Sbjct: 90 VVS 92
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 80 QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELI 133
Q+ LE V P + T + G ++ + C ASG+P P I W ++ L+
Sbjct: 2 QLTVLERVAPTITGNLENQTTSI---GESIEVSCTASGNPPPQIMWFKDNETLV 52
>pdb|2PO6|C Chain C, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
pdb|2PO6|G Chain G, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
pdb|3SDX|E Chain E, Crystal Structure Of Human Autoreactive-Valpha24 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDX|G Chain G, Crystal Structure Of Human Autoreactive-Valpha24 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
Length = 204
Score = 29.6 bits (65), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 101 MVIREGSNVTLKCAASGSPKPNITWRRE 128
++I EG N TL+C + SP N+ W ++
Sbjct: 10 LIILEGKNCTLQCNYTVSPFSNLRWYKQ 37
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 17 STVAWLRVDTQ------TILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMC 70
S + W + DT TI+T + + ++TK LHI + SD Y+C
Sbjct: 30 SNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYIC 89
Query: 71 QVN 73
V+
Sbjct: 90 VVS 92
>pdb|2EYR|A Chain A, A Structural Basis For Selection And Cross-species
Reactivity Of The Semi-invariant Nkt Cell Receptor In
Cd1d/glycolipid Recognition
pdb|2EYS|A Chain A, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|A Chain A, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|C Chain C, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
Length = 210
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 101 MVIREGSNVTLKCAASGSPKPNITWRRE 128
++I EG N TL+C + SP N+ W ++
Sbjct: 13 LIILEGKNCTLQCNYTVSPFSNLRWYKQ 40
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 17 STVAWLRVDTQ------TILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMC 70
S + W + DT TI+T + + ++TK LHI + SD Y+C
Sbjct: 33 SNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYIC 92
Query: 71 QVN 73
V+
Sbjct: 93 VVS 95
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 9/116 (7%)
Query: 37 ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK-SQVGYLEVVV-----PP 90
+ HRIG + W L V SD+G Y C V + + +L+VV P
Sbjct: 59 FKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPI 118
Query: 91 DILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFK 146
P + V+ G +V C +P+I W + E G + P+ K
Sbjct: 119 LQAGLPANASTVV--GGDVEFVCKVYSDAQPHIQWIKH-VEKNGSKYGPDGLPYLK 171
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 109 VTLKCAASGSPKPNITWRREGGEL 132
V +C A G+P P W + G E
Sbjct: 36 VKFRCPAGGNPXPTXRWLKNGKEF 59
>pdb|3HUJ|E Chain E, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3HUJ|G Chain G, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3VWJ|C Chain C, Ternary Crystal Structure Of The Human Nkt Tcr-Cd1d-C20:2
Complex
pdb|3VWK|C Chain C, Ternary Crystal Structure Of The Human Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide Complex
Length = 209
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 101 MVIREGSNVTLKCAASGSPKPNITWRRE 128
++I EG N TL+C + SP N+ W ++
Sbjct: 12 LIILEGKNCTLQCNYTVSPFSNLRWYKQ 39
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 17 STVAWLRVDTQ------TILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMC 70
S + W + DT TI+T + + ++TK LHI + SD Y+C
Sbjct: 32 SNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYIC 91
Query: 71 QVN 73
V+
Sbjct: 92 VVS 94
>pdb|3TYF|A Chain A, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TYF|C Chain C, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TZV|A Chain A, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
pdb|3TZV|G Chain G, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
Length = 213
Score = 29.6 bits (65), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 101 MVIREGSNVTLKCAASGSPKPNITWRRE 128
++I EG N TL+C + SP N+ W ++
Sbjct: 13 LIILEGKNCTLQCNYTVSPFSNLRWYKQ 40
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 17 STVAWLRVDTQ------TILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMC 70
S + W + DT TI+T + + ++TK LHI + SD Y+C
Sbjct: 33 SNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYIC 92
Query: 71 QVN 73
V+
Sbjct: 93 VVS 95
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 106 GSNVTLKCAASGSPKPNITWRREG 129
G +V L C A GSP P I W EG
Sbjct: 36 GGSVELHCEAVGSPVPEIQWWFEG 59
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 29.6 bits (65), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 64 DRGWYMCQVNTDPMKSQVGYLEVVVPPDILDYPTSTDMV----IREGSNVTLKCAASGSP 119
D G Y CQ ++Q E V +I T ++V ++G + + C S SP
Sbjct: 69 DAGIYRCQATDAKGQTQ----EATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSP 124
Query: 120 KPNITW 125
P ++W
Sbjct: 125 APAVSW 130
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 106 GSNVTLKCAASGSPKPNITWRREG 129
G +V L C A GSP P I W EG
Sbjct: 36 GGSVELHCEAVGSPVPEIQWWFEG 59
>pdb|1F11|A Chain A, F124 Fab Fragment From A Monoclonal Anti-Pres2 Antibody
pdb|1F11|C Chain C, F124 Fab Fragment From A Monoclonal Anti-Pres2 Antibody
Length = 218
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 55 LHIREVRESDRGWYMC-QVNTDPMKSQVG-YLEVV---VPPDILDYPTSTDMVIREGSNV 109
L+I V E D Y C Q N DP G LE+ P + +P S++ + G++V
Sbjct: 77 LNIHPVEEEDAATYYCQQSNEDPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASV 136
Query: 110 TLKCAASGSPKPNITWRREGGE 131
N+ W+ +G E
Sbjct: 137 VCFLNNFYPKDINVKWKIDGSE 158
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 29.3 bits (64), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 100 DMVIREGSNVTLKCAASGSPKPNITWRR 127
D +REG +V + G PKP ++W R
Sbjct: 14 DQSVREGQDVIMSIRVQGEPKPVVSWLR 41
>pdb|3BZ4|B Chain B, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Decasaccharide
pdb|3BZ4|D Chain D, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Decasaccharide
pdb|3BZ4|F Chain F, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Decasaccharide
pdb|3BZ4|H Chain H, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Decasaccharide
pdb|3C5S|B Chain B, Crystal Structure Of Monoclonal Fab F22-4 Specific For
Shigella Flexneri 2a O-Ag
pdb|3C5S|D Chain D, Crystal Structure Of Monoclonal Fab F22-4 Specific For
Shigella Flexneri 2a O-Ag
pdb|3C6S|B Chain B, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Pentadecasaccharide
pdb|3C6S|D Chain D, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Pentadecasaccharide
pdb|3C6S|F Chain F, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Pentadecasaccharide
pdb|3C6S|H Chain H, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Pentadecasaccharide
pdb|3GGW|B Chain B, Crystal Structure Of Fab F22-4 In Complex With A
Carbohydrate-Mimetic Peptide
pdb|3GGW|D Chain D, Crystal Structure Of Fab F22-4 In Complex With A
Carbohydrate-Mimetic Peptide
Length = 217
Score = 29.3 bits (64), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 19/133 (14%)
Query: 19 VAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK 78
VA +R+ + T + I S+++ YL + +R D G Y C + PM
Sbjct: 48 VAEIRLKSDNYATYYAESVKGKFTISRDDSKSRL-YLQMNNLRTEDTGIYYCFL---PMD 103
Query: 79 SQVGYLEVVV------PPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP-NITWRREGG 130
V V PP + YP + + S VTL C G P+P +TW G
Sbjct: 104 YWGQGTSVTVSSAKTTPPSV--YPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS--G 159
Query: 131 ELIAQGNGQEDFP 143
L +G FP
Sbjct: 160 SL---SSGVHTFP 169
>pdb|3E8U|L Chain L, Crystal Structure And Thermodynamic Analysis Of Diagnostic
Fab 106.3 Complexed With Bnp 5-13 (C10a) Reveal Basis Of
Selective Molecular Recognition
Length = 216
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 55 LHIREVRESDRGWYMC-QVNTDPMKSQVG-YLEVV---VPPDILDYPTSTDMVIREGSNV 109
L+I V E D Y C Q N DP G LE+ P + +P S++ + G++V
Sbjct: 77 LNIHPVEEEDAATYYCQQSNEDPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASV 136
Query: 110 TLKCAASGSPKPNITWRREGGE 131
N+ W+ +G E
Sbjct: 137 VCFLNNFYPKDINVKWKIDGSE 158
>pdb|1FJ1|B Chain B, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
pdb|1FJ1|D Chain D, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
Length = 213
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 54 YLHIREVRESDRGWYMCQVNTDPMKSQVGYL---EVVVPPDILDYPTSTDMVIREGSNVT 110
YLHI ++ D Y C D PP + YP + GS+VT
Sbjct: 80 YLHISNLKNEDTATYFCARGLDSWGQGTSVTVSSAKTTPPSV--YPLAPGCGDTTGSSVT 137
Query: 111 LKCAASGSPKPNITWRREGGEL 132
L C G ++T G L
Sbjct: 138 LGCLVKGYFPESVTVTWNSGSL 159
>pdb|2PTT|A Chain A, Structure Of Nk Cell Receptor 2b4 (Cd244) Bound To Its
Ligand Cd48
pdb|2PTV|A Chain A, Structure Of Nk Cell Receptor Ligand Cd48
Length = 110
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 19 VAWLRVDTQTILTIQ---THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV 72
+ WL Q IL T I ++ G + E LHI VR+ D+G Y +V
Sbjct: 36 ITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKGTYYMRV 92
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
Length = 91
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 96 PTSTDMVIREGSNVTLKCAASGSPKPNITWRR 127
PTS ++ GS + L+C A GSP P+ W +
Sbjct: 10 PTSQKLM--PGSTLVLQCVAVGSPIPHYQWFK 39
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 98 STDMVIREGSNVTLKCAASGSPKPNITWRREGGELI-AQGNGQ 139
+ + + EG V C A G P P I W L+ A+ NG+
Sbjct: 392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGR 434
>pdb|2ZCH|L Chain L, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
Length = 215
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 55 LHIREVRESDRGWYMC-QVNTDPMKSQVG-YLEVV---VPPDILDYPTSTDMVIREGSNV 109
L+I+ V E D Y C Q N DP G LE+ P + +P S++ + G++V
Sbjct: 77 LNIQPVEEEDAATYYCQQSNEDPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASV 136
Query: 110 TLKCAASGSPKPNITWRREGGE 131
N+ W+ +G E
Sbjct: 137 VCFLNNFYPKDINVKWKIDGSE 158
>pdb|4HBC|L Chain L, Crystal Structure Of A Conformation-Dependent Rabbit Igg
Fab Specific For Amyloid Prefibrillar Oligomers
Length = 213
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 53 WYLHIREVRESDRGWYMCQVN-TDPM------KSQVGYLEVVVPPDILDYPTSTDMVIRE 105
+ L I ++ +D Y CQ +P ++VG V P +L +P S D+V
Sbjct: 71 FTLTISDLECADAATYYCQSTYENPTYVSFGGGTEVGVKGDPVAPTVLIFPPSADLVAT- 129
Query: 106 GSNVTLKCAASGS-PKPNITWRREG 129
VT+ C A+ P +TW +G
Sbjct: 130 -GTVTIVCVANKYFPDVTVTWEVDG 153
>pdb|2IAL|A Chain A, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAL|C Chain C, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAM|C Chain C, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|D Chain D, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|I Chain I, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|N Chain N, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|S Chain S, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
Length = 202
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 100 DMVIREGSNVTLKCAASGSPKPNITWRREG--GELI 133
D++++EG+N TL+C S S N+ W + G+LI
Sbjct: 9 DLILQEGANSTLRCNFSDSVN-NLQWFHQNPWGQLI 43
>pdb|2A77|H Chain H, Anti-cocaine Antibody 7.5.21, Crystal Form Ii
Length = 222
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 23/105 (21%)
Query: 54 YLHIREVRESDRGWYMCQVNTDPMKSQVGYLEV-------------VVPPDILDYPTSTD 100
YL + +R D Y C + D KS + +V PP + YP +
Sbjct: 80 YLQMSSLRSEDTALYFCARHDDYGKSPY-FFDVWGAGTTVTASSAKTTPPSV--YPLAPG 136
Query: 101 MVIREGSNVTLKCAASGS-PKP-NITWRREGGELIAQGNGQEDFP 143
+ S VTL C G P+P +TW G L +G FP
Sbjct: 137 SAAQTNSMVTLGCLVKGYFPEPVTVTW--NSGSL---SSGVHTFP 176
>pdb|2ZCK|L Chain L, Crystal Structure Of A Ternary Complex Between Psa, A
Substrat-Acyl Intermediate And An Activating Antibody
pdb|2ZCL|L Chain L, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
Length = 218
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 55 LHIREVRESDRGWYMC-QVNTDPMKSQVG-YLEVV---VPPDILDYPTSTDMVIREGSNV 109
L+I+ V E D Y C Q N DP G LE+ P + +P S++ + G++V
Sbjct: 77 LNIQPVEEEDAATYYCQQSNEDPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASV 136
Query: 110 TLKCAASGSPKPNITWRREGGE 131
N+ W+ +G E
Sbjct: 137 VCFLNNFYPKDINVKWKIDGSE 158
>pdb|1H3P|H Chain H, Structural Characterisation Of A Monoclonal Antibody
Specific For The Pres1 Region Of The Hepatitis B Virus
Length = 219
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 54 YLHIREVRESDRGWYMC-QVNTDPMKSQVGYLEVV-----VPPDILDYPTSTDMVIREGS 107
YL + +R D Y C N D G L V PP + YP + + + S
Sbjct: 80 YLEMTSLRSEDTAMYYCASFNWDVAYWGQGTLVTVSAAKTTPPSV--YPLAPGSLAQTNS 137
Query: 108 NVTLKCAASGS-PKP-NITWRREGGELIAQG 136
VTL C G P+P +TW G L + G
Sbjct: 138 MVTLGCLVKGYFPEPVTVTWNS--GSLSSSG 166
>pdb|4E41|D Chain D, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E41|I Chain I, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E42|A Chain A, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E42|C Chain C, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
Length = 203
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 100 DMVIREGSNVTLKCAASGSPKPNITWRREG--GELI 133
D++++EG+N TL+C S S N+ W + G+LI
Sbjct: 9 DLILQEGANSTLRCNFSDSVN-NLQWFHQNPWGQLI 43
>pdb|2Q86|A Chain A, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
pdb|2Q86|C Chain C, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
Length = 229
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 101 MVIREGSNVTLKCAASGSPKPNITWRRE 128
+V+R+G N L+C S +P ++ W ++
Sbjct: 11 LVVRQGENCVLQCNYSVTPDNHLRWYKQ 38
>pdb|3TT1|L Chain L, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
pdb|3TT1|M Chain M, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
Length = 218
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 55 LHIREVRESDRGWYMC-QVNTDPMKSQVG-YLEVV---VPPDILDYPTSTDMVIREGSNV 109
L+I V E D Y C Q N DP G LE+ P + +P S++ + G++V
Sbjct: 77 LNIHPVEEEDAATYYCQQSNEDPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASV 136
Query: 110 TLKCAASGSPKPNITWRREGGE 131
N+ W+ +G E
Sbjct: 137 VCFLNNFYPKDINVKWKIDGSE 158
>pdb|2V17|H Chain H, Structure Of The Complex Of Antibody Mn423 With A Fragment
Of Tau Protein
Length = 222
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 12/89 (13%)
Query: 54 YLHIREVRESDRGWYMCQVNTDPMKSQVGY----------LEVVVPPDILDYPTSTDMVI 103
YL + +R D Y C + ++ Y PP + YP +
Sbjct: 82 YLQMNALRAEDSAIYYCARDNGAARATFAYWGQGTLVTVSAAKTTPPSV--YPLAPGCGD 139
Query: 104 REGSNVTLKCAASGSPKPNITWRREGGEL 132
GS+VTL C G ++T G L
Sbjct: 140 TTGSSVTLGCLVKGYFPESVTVTWNSGSL 168
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 103 IREGSNVTLKCAASGSPKPNITWRREG 129
+ EG +V L+C S P P + W+R
Sbjct: 27 VLEGDSVKLECQISAIPPPKLFWKRNN 53
>pdb|2ZPK|H Chain H, Crystal Structure Of P20.1 Fab Fragment In Complex With
Its Antigen Peptide
pdb|2ZPK|I Chain I, Crystal Structure Of P20.1 Fab Fragment In Complex With
Its Antigen Peptide
Length = 216
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 17/99 (17%)
Query: 54 YLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVV-------VPPDILDYPTSTDMVIREG 106
YLHI ++ D Y C P G +V PP + YP + +
Sbjct: 80 YLHINNLKNEDTATYFC-AREGPGFVYWGQGTLVTVSAAKTTPPSV--YPLAPGSAAQTN 136
Query: 107 SNVTLKCAASGS-PKP-NITWRREGGELIAQGNGQEDFP 143
S VTL C G P+P +TW G L +G FP
Sbjct: 137 SMVTLGCLVKGYFPEPVTVTWNS--GSL---SSGVHTFP 170
>pdb|1IQW|L Chain L, Crystal Structure Of The Fab Fragment Of The Mouse Anti-
Human Fas Antibody Hfe7a
Length = 218
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 55 LHIREVRESDRGWYMC-QVNTDPMKSQVG-YLEVV---VPPDILDYPTSTDMVIREGSNV 109
L+I V E D Y C Q N DP G LE+ P + +P S++ + G++V
Sbjct: 77 LNIHPVEEEDAATYYCQQSNEDPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASV 136
Query: 110 TLKCAASGSPKPNITWRREGGE 131
N+ W+ +G E
Sbjct: 137 VCFLNNFYPKDINVKWKIDGSE 158
>pdb|3O8X|C Chain C, Recognition Of Glycolipid Antigen By Inkt Cell Tcr
pdb|3O9W|C Chain C, Recognition Of A Glycolipid Antigen By The Inkt Cell Tcr
pdb|3QUX|C Chain C, Structure Of The Mouse Cd1d-Alpha-C-Galcer-Inkt Tcr
Complex
pdb|3QUY|C Chain C, Structure Of The Mouse Cd1d-Bnnh-Gsl-1'-Inkt Tcr Complex
pdb|3QUZ|C Chain C, Structure Of The Mouse Cd1d-Nu-Alpha-Galcer-Inkt Tcr
Complex
pdb|3RZC|C Chain C, Structure Of The Self-Antigen Igb3 Bound To Mouse Cd1d And
In Complex With The Inkt Tcr
pdb|3TA3|C Chain C, Structure Of The Mouse Cd1d-Glc-Dag-S2-Inkt Tcr Complex
pdb|3TVM|C Chain C, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3TVM|G Chain G, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3RTQ|C Chain C, Structure Of The Mouse Cd1d-Hs44-Inkt Tcr Complex
Length = 209
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 101 MVIREGSNVTLKCAASGSPKPNITWRRE 128
+V+R+G N L+C S +P ++ W ++
Sbjct: 12 LVVRQGENCVLQCNYSVTPDNHLRWFKQ 39
>pdb|2ARJ|L Chain L, Cd8alpha-Alpha In Complex With Yts 105.18 Fab
pdb|2ARJ|A Chain A, Cd8alpha-Alpha In Complex With Yts 105.18 Fab
Length = 211
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 91 DILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRRE 128
DI+ + + + + G VTL C AS + + NI W ++
Sbjct: 1 DIVMTQSPSSLAVSAGERVTLNCKASQNVRNNIAWYQQ 38
>pdb|1GXE|A Chain A, Central Domain Of Cardiac Myosin Binding Protein C
Length = 139
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 89 PPDI-LDYP--TSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGN 137
PP I LD P +V+ G+ + L SG P P + W++ I QGN
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQK----AITQGN 60
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 103 IREGSNVTLKCAASGSPKPNITWRREG 129
+ G VTL C P P I W ++G
Sbjct: 15 VAPGGTVTLTCEVPAQPSPQIHWMKDG 41
>pdb|3L1O|H Chain H, Crystal Structure Of Monoclonal Antibody Mn423 Fab
Fragment With Free Combining Site, Crystallized In The
Presence Of Zinc
Length = 227
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 12/89 (13%)
Query: 54 YLHIREVRESDRGWYMCQVNTDPMKSQVGY----------LEVVVPPDILDYPTSTDMVI 103
YL + +R D Y C + ++ Y PP + YP +
Sbjct: 82 YLQMNALRAEDSAIYYCARDNGAARATFAYWGQGTLVTVSAAKTTPPSV--YPLAPGCGD 139
Query: 104 REGSNVTLKCAASGSPKPNITWRREGGEL 132
GS+VTL C G ++T G L
Sbjct: 140 TTGSSVTLGCLVKGYFPESVTVTWNSGSL 168
>pdb|3HG1|E Chain E, Germline-Governed Recognition Of A Cancer Epitope By An
Immunodominant Human T Cell Receptor
Length = 244
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 106 GSNVTLKCAASGSPKPNITWRREGG 130
GS ++L+C G+ PN+ W R+
Sbjct: 16 GSPLSLECTVEGTSNPNLYWYRQAA 40
>pdb|32C2|A Chain A, Structure Of An Activity Suppressing Fab Fragment To
Cytochrome P450 Aromatase
Length = 217
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKSQVG-YLEVV---VPPDILDYPTSTDMVIREGSNVT 110
L+I V E D Y CQ +P+ G LE+ P + +P S++ + G++V
Sbjct: 77 LNIHPVEEEDAATYYCQHIREPLTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVV 136
Query: 111 LKCAASGSPKPNITWRREGGE 131
N+ W+ +G E
Sbjct: 137 CFLNNFYPKDINVKWKIDGSE 157
>pdb|1RZF|H Chain H, Crystal Structure Of Human Anti-hiv-1 Gp120-reactive
Antibody E51
Length = 235
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 42 RIGVTHSE-TKAWYLHIREVRESDRGWYMCQVNT 74
R+ ++ E T+ YLH+R +R D Y C N+
Sbjct: 67 RVTISADESTRTVYLHLRGLRSDDTAVYYCASNS 100
>pdb|3UO1|H Chain H, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
pdb|3UYR|H Chain H, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
pdb|3V4U|H Chain H, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
pdb|3V52|H Chain H, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
Length = 216
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 21/92 (22%)
Query: 54 YLHIREVRESDRGWYMCQVNTDPMKSQVGYLEV-------------VVPPDILDYPTSTD 100
YL + +R D Y C T+ GYL+V PP + YP +
Sbjct: 80 YLQMSSLRCEDTATYYCARLTN------GYLDVWGAGTTVTVSSAKTTPPSV--YPLAPG 131
Query: 101 MVIREGSNVTLKCAASGSPKPNITWRREGGEL 132
GS+VTL C G ++T G L
Sbjct: 132 CGDTTGSSVTLGCLVKGYFPESVTVTWNSGSL 163
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 109 VTLKCAASGSPKPNITWRREGGEL 132
V +C A G+P P + W + G E
Sbjct: 30 VKFRCPAGGNPMPTMRWLKNGKEF 53
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 41 HRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75
HRIG + W L + V SD+G Y C V +
Sbjct: 57 HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 91
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 102 VIREGSNVTLKCAASGSPKPNITWRREG 129
+ G VTL C P P I W ++G
Sbjct: 21 AVAPGGTVTLTCEVPAQPSPQIHWMKDG 48
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 109 VTLKCAASGSPKPNITWRREGGEL 132
V +C A G+P P + W + G E
Sbjct: 31 VKFRCPAGGNPMPTMRWLKNGKEF 54
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 41 HRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75
HRIG + W L + V SD+G Y C V +
Sbjct: 58 HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 92
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 109 VTLKCAASGSPKPNITWRREGGEL 132
V +C A G+P P + W + G E
Sbjct: 26 VKFRCPAGGNPMPTMRWLKNGKEF 49
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 37 ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75
+ HRIG + W L + V SD+G Y C V +
Sbjct: 49 FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 87
>pdb|3HE6|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta8.2 Nkt Tcr
pdb|3HE7|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta7 Nkt Tcr
pdb|3ARB|C Chain C, Ternary Crystal Structure Of The Nkt
Tcr-Cd1d-Alpha-Galactosylceramide Analogue-Och
pdb|3ARD|C Chain C, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-3'deoxy-Alpha- Galactosylceramide
pdb|3ARE|C Chain C, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide
pdb|3ARF|C Chain C, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-C20:2
pdb|3ARG|C Chain C, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-Alpha-
Glucosylceramide(C20:2)
pdb|3SCM|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Isoglobotrihexosylceramide
pdb|3SDA|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDC|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Globotrihexosylceramide
pdb|3SDD|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Lactosylceramide
pdb|3TN0|C Chain C, Structure Of Mouse Va14vb8.2nkt Tcr-Mouse
Cd1d-A-C-Galactosylceramide Complex
pdb|3QI9|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Phosphotidylinositol
With Mouse Valpha14-Vbeta6 2a3-D Nkt Tcr
Length = 207
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 101 MVIREGSNVTLKCAASGSPKPNITWRRE 128
+V+R+G N L+C S +P ++ W ++
Sbjct: 10 LVVRQGENSVLQCNYSVTPDNHLRWFKQ 37
>pdb|3TO4|C Chain C, Structure Of Mouse
Valpha14vbeta2-Mousecd1d-Alpha-Galactosylceramide
Length = 212
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 101 MVIREGSNVTLKCAASGSPKPNITWRRE 128
+V+R+G N L+C S +P ++ W ++
Sbjct: 10 LVVRQGENSVLQCNYSVTPDNHLRWFKQ 37
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 101 MVIREGSNVTLKCAASGSPKPNITWRR 127
+ I+EG + L C G P P ++W +
Sbjct: 232 VTIQEGKALNLTCNVWGDPPPEVSWLK 258
>pdb|2YWZ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 111
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 39 KNHRIGVTHSET-----KAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVV 88
K IG + ET K++ L I ++R D G Y CQ + P LE V
Sbjct: 47 KTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQADYSPSCYSYPSLESAV 101
>pdb|1YPZ|E Chain E, Immune Receptor
pdb|1YPZ|G Chain G, Immune Receptor
Length = 207
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 18 TVAWLRVDTQTILTIQTHVIT---KNHRIGVTHSETKAWY--LHIREVRESDRGWYMCQV 72
+V W R +++ L ++ + +N R+ + Y LHIR+ + D G Y C
Sbjct: 31 SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAA 90
Query: 73 NT 74
+T
Sbjct: 91 DT 92
>pdb|1UB6|H Chain H, Crystal Structure Of Antibody 19g2 With Sera Ligand
pdb|1UB6|A Chain A, Crystal Structure Of Antibody 19g2 With Sera Ligand
Length = 208
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 54 YLHIREVRESDRGWYMCQVNTD-PMKSQVGYLEV----VVPPDILDYPTSTDMVIREGSN 108
YL + +R D Y C P Q + V PP + YP + GS+
Sbjct: 78 YLQMSSLRSEDTALYYCARGQGRPYWGQGTLVTVSAAKTTPPSV--YPAAPGCGDTTGSS 135
Query: 109 VTLKCAASGS-PKP-NITWRREGGEL 132
VTL C G P+ +TW G +
Sbjct: 136 VTLGCLVKGYFPESVTVTWNSGGSSV 161
>pdb|3I75|B Chain B, Antibody Structure
Length = 225
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 102 VIREGSNVTLKCAASG 117
++R G++VTL CAASG
Sbjct: 11 LVRPGASVTLSCAASG 26
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 101 MVIREGSNVTLKCAASGSPKPNITWRR 127
+ I+EG + L C G P P ++W +
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLK 153
>pdb|1HYR|C Chain C, Crystal Structure Of Human Mica In Complex With Natural
Killer Cell Receptor Nkg2d
Length = 275
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 12/43 (27%)
Query: 108 NVTLKCAASGSPKPNIT--WRREG----------GELIAQGNG 138
N+T+ C ASG NIT WR++G G+++ GNG
Sbjct: 198 NITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNG 240
>pdb|1B3J|A Chain A, Structure Of The Mhc Class I Homolog Mic-A, A Gammadelta T
Cell Ligand
Length = 274
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 17/67 (25%)
Query: 84 LEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNIT--WRREG----------GE 131
L VPP + T EG N+T+ C ASG NIT WR++G G+
Sbjct: 178 LRRTVPPMV----NVTRSEASEG-NITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGD 232
Query: 132 LIAQGNG 138
++ GNG
Sbjct: 233 VLPDGNG 239
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 96 PTSTDMVIREGSNVTLKCAASGS 118
P+ ++V+ G VTL+C ++GS
Sbjct: 9 PSGPELVVEPGETVTLRCVSNGS 31
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 55 LHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDILDYPTSTDMVIRE--GSNVTLK 112
L I V SD+G Y C ++ M + V + + + + ++ G V +
Sbjct: 162 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIP 221
Query: 113 CAASGSPKPNITWRREG 129
G P P I W + G
Sbjct: 222 AKYLGYPPPEIKWYKNG 238
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 96 PTSTDMVIREGSNVTLKCAASGS 118
P+ ++V+ G VTL+C ++GS
Sbjct: 9 PSGPELVVEPGETVTLRCVSNGS 31
>pdb|1Z9M|A Chain A, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
pdb|1Z9M|B Chain B, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
Length = 145
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 16 ESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75
+S++ W QT+ + + +++RI + S + I V +D G Y C + T
Sbjct: 67 DSSLQWSNPAQQTLYFGEKRAL-RDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTM 125
Query: 76 PMKSQVGYLEVVVPP 90
P+++ + V+ P
Sbjct: 126 PVRTAKSLVTVLGIP 140
>pdb|1MF2|L Chain L, Anti Hiv1 Protease Fab Complex
pdb|1MF2|M Chain M, Anti Hiv1 Protease Fab Complex
Length = 215
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 55 LHIREVRESDRGWYMCQVNTD-PMKSQVG-YLEVV---VPPDILDYPTSTDMVIREGSNV 109
LHI + E D Y CQ + + P G LE+ P + +P S++ + G++V
Sbjct: 77 LHIHPMEEDDSAMYFCQQSKEVPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASV 136
Query: 110 TLKCAASGSPKPNITWRREGGE 131
N+ W+ +G E
Sbjct: 137 VCFLNNFYPKDINVKWKIDGSE 158
>pdb|2HRP|L Chain L, Antigen-Antibody Complex
pdb|2HRP|M Chain M, Antigen-Antibody Complex
Length = 218
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 55 LHIREVRESDRGWYMCQVNTD-PMKSQVG-YLEVV---VPPDILDYPTSTDMVIREGSNV 109
LHI + E D Y CQ + + P G LE+ P + +P S++ + G++V
Sbjct: 77 LHIHPMEEDDSAMYFCQQSKEVPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASV 136
Query: 110 TLKCAASGSPKPNITWRREGGE 131
N+ W+ +G E
Sbjct: 137 VCFLNNFYPKDINVKWKIDGSE 158
>pdb|3U36|H Chain H, Crystal Structure Of Pg9 Fab
pdb|3U36|A Chain A, Crystal Structure Of Pg9 Fab
pdb|3U36|C Chain C, Crystal Structure Of Pg9 Fab
pdb|3U36|E Chain E, Crystal Structure Of Pg9 Fab
Length = 248
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 102 VIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ 139
V++ GS++ L CAASG + R+G + Q GQ
Sbjct: 10 VVQPGSSLRLSCAASG-----FDFSRQGMHWVRQAPGQ 42
>pdb|1HQ4|B Chain B, Structure Of Native Catalytic Antibody Ha5-19a4
pdb|1HQ4|D Chain D, Structure Of Native Catalytic Antibody Ha5-19a4
Length = 218
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Query: 42 RIGVTHSETK-AWYLHIREVRESDRGWYMCQV---NTDPMKSQVGYLEVV-----VPPDI 92
RI +T +K ++L + V D Y C + N+D G L V PP +
Sbjct: 67 RISITRDTSKNQFFLQLNSVTTEDTATYYCAIGYGNSDYWGQ--GTLVTVSAAKTTPPSV 124
Query: 93 LDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGEL 132
YP + GS+VTL C G ++T G L
Sbjct: 125 --YPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSL 162
>pdb|1CF8|H Chain H, Convergence Of Catalytic Antibody And Terpene Cyclase
Mechanisms: Polyene Cyclization Directed By
Carbocation-pi Interactions
Length = 218
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Query: 42 RIGVTHSETK-AWYLHIREVRESDRGWYMCQV---NTDPMKSQVGYLEVV-----VPPDI 92
RI +T +K ++L + V D Y C + N+D G L V PP +
Sbjct: 67 RISITRDTSKNQFFLQLNSVTTEDTATYYCAIGYGNSDYWGQ--GTLVTVSAAKTTPPSV 124
Query: 93 LDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGEL 132
YP + GS+VTL C G ++T G L
Sbjct: 125 --YPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSL 162
>pdb|3U2S|H Chain H, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Zm109
pdb|3U2S|A Chain A, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Zm109
pdb|3U4E|H Chain H, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Cap45
pdb|3U4E|A Chain A, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Cap45
Length = 248
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 102 VIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ 139
V++ GS++ L CAASG + R+G + Q GQ
Sbjct: 10 VVQPGSSLRLSCAASG-----FDFSRQGMHWVRQAPGQ 42
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
Length = 104
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 103 IREGSNVTLKCAASGSPKPNITWRREGGE 131
I E + V L CA SG P + W+ + G+
Sbjct: 15 IPENNPVKLSCAYSGFSSPRVEWKFDQGD 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,584,342
Number of Sequences: 62578
Number of extensions: 184743
Number of successful extensions: 1572
Number of sequences better than 100.0: 176
Number of HSP's better than 100.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 1307
Number of HSP's gapped (non-prelim): 306
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)