Query psy16425
Match_columns 163
No_of_seqs 132 out of 1806
Neff 10.9
Searched_HMMs 46136
Date Fri Aug 16 20:57:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.8 8.8E-20 1.9E-24 142.4 15.9 139 3-156 257-399 (1051)
2 KOG3513|consensus 99.8 2E-18 4.3E-23 135.0 13.8 145 2-157 346-493 (1051)
3 PHA02826 IL-1 receptor-like pr 99.8 1.2E-17 2.6E-22 113.5 13.3 97 53-157 98-202 (227)
4 KOG4194|consensus 99.8 3.5E-18 7.7E-23 126.6 11.0 142 5-157 630-775 (873)
5 KOG4221|consensus 99.7 5.5E-17 1.2E-21 127.5 13.4 138 3-154 253-392 (1381)
6 PHA02785 IL-beta-binding prote 99.6 2.3E-14 4.9E-19 102.9 15.2 135 4-156 138-305 (326)
7 KOG4221|consensus 99.6 1.6E-14 3.4E-19 114.0 14.0 140 3-157 156-305 (1381)
8 cd05892 Ig_Myotilin_C C-termin 99.6 1.9E-14 4.1E-19 81.5 9.4 73 5-85 1-74 (75)
9 KOG4194|consensus 99.6 7.4E-15 1.6E-19 109.3 9.4 152 2-156 518-682 (873)
10 PHA02785 IL-beta-binding prote 99.6 5.3E-14 1.1E-18 101.0 12.2 135 4-157 43-191 (326)
11 cd05893 Ig_Palladin_C C-termin 99.5 7.9E-14 1.7E-18 79.0 8.6 73 5-85 1-74 (75)
12 cd05852 Ig5_Contactin-1 Fifth 99.5 1E-13 2.2E-18 78.2 8.8 70 3-85 2-72 (73)
13 cd05744 Ig_Myotilin_C_like Imm 99.5 3E-13 6.5E-18 76.7 9.5 73 5-85 1-74 (75)
14 cd05882 Ig1_Necl-1 First (N-te 99.5 7.6E-13 1.7E-17 78.3 11.4 83 2-85 12-94 (95)
15 cd05723 Ig4_Neogenin Fourth im 99.5 3.4E-13 7.4E-18 75.7 8.9 68 4-84 1-69 (71)
16 cd05745 Ig3_Peroxidasin Third 99.5 5E-13 1.1E-17 75.7 8.4 70 3-85 3-73 (74)
17 cd05762 Ig8_MLCK Eighth immuno 99.5 2.3E-12 5E-17 76.8 11.0 79 3-91 16-95 (98)
18 cd05854 Ig6_Contactin-2 Sixth 99.5 2.4E-12 5.1E-17 74.8 10.7 81 4-90 2-85 (85)
19 cd04969 Ig5_Contactin_like Fif 99.5 1.3E-12 2.7E-17 73.8 8.8 70 3-85 2-72 (73)
20 cd05726 Ig4_Robo Fhird immunog 99.4 2E-12 4.4E-17 75.9 9.7 81 3-88 2-83 (90)
21 cd05853 Ig6_Contactin-4 Sixth 99.4 1.4E-12 3.1E-17 75.3 8.7 81 4-90 2-85 (85)
22 cd05865 Ig1_NCAM-1 First immun 99.4 4.4E-12 9.6E-17 75.2 10.7 75 3-84 16-91 (96)
23 cd05737 Ig_Myomesin_like_C C-t 99.4 3.7E-12 8.1E-17 75.1 10.1 73 3-84 17-90 (92)
24 cd05863 Ig2_VEGFR-3 Second imm 99.4 1.7E-12 3.8E-17 71.7 8.0 65 5-87 1-66 (67)
25 cd04976 Ig2_VEGFR Second immun 99.4 1.9E-12 4.2E-17 72.6 8.3 69 5-87 1-70 (71)
26 cd05771 IgC_Tapasin_R Tapasin- 99.4 3.5E-12 7.5E-17 81.0 10.5 76 54-131 2-80 (139)
27 cd05735 Ig8_DSCAM Eight immuno 99.4 6.8E-12 1.5E-16 73.3 10.8 80 4-91 3-86 (88)
28 cd05746 Ig4_Peroxidasin Fourth 99.4 1.8E-12 3.8E-17 72.4 7.7 66 5-83 1-67 (69)
29 cd05894 Ig_C5_MyBP-C C5 immuno 99.4 1.1E-11 2.3E-16 72.2 10.6 73 3-84 11-84 (86)
30 cd05748 Ig_Titin_like Immunogl 99.4 8.7E-12 1.9E-16 70.5 10.0 70 5-84 2-72 (74)
31 cd04970 Ig6_Contactin_like Six 99.4 9.3E-12 2E-16 72.3 10.2 81 4-90 2-85 (85)
32 cd05876 Ig3_L1-CAM Third immun 99.4 4.6E-12 1E-16 71.1 8.6 69 5-86 1-70 (71)
33 cd04975 Ig4_SCFR_like Fourth i 99.4 6.5E-12 1.4E-16 75.2 9.5 76 3-87 19-100 (101)
34 cd05867 Ig4_L1-CAM_like Fourth 99.4 7.2E-12 1.5E-16 71.3 9.3 73 3-86 2-75 (76)
35 cd05725 Ig3_Robo Third immunog 99.4 4.9E-12 1.1E-16 70.6 8.4 67 5-85 1-68 (69)
36 cd05859 Ig4_PDGFR-alpha Fourth 99.4 4.5E-12 9.7E-17 75.9 8.6 81 3-87 19-100 (101)
37 cd05851 Ig3_Contactin-1 Third 99.4 6.8E-12 1.5E-16 73.4 8.9 70 3-86 17-87 (88)
38 cd07701 Ig1_Necl-3 First (N-te 99.4 1.4E-11 3E-16 73.1 10.2 83 3-86 13-95 (95)
39 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 8.5E-12 1.8E-16 70.6 8.9 71 5-86 1-73 (74)
40 cd05864 Ig2_VEGFR-2 Second imm 99.4 6E-12 1.3E-16 70.3 7.9 67 6-87 2-69 (70)
41 cd05855 Ig_TrkB_d5 Fifth domai 99.4 1.1E-11 2.4E-16 70.6 8.9 66 7-81 3-73 (79)
42 cd05763 Ig_1 Subgroup of the i 99.4 8.8E-12 1.9E-16 70.7 8.5 72 6-86 2-74 (75)
43 KOG4222|consensus 99.4 2.3E-12 5.1E-17 101.5 8.0 138 3-155 241-388 (1281)
44 KOG4222|consensus 99.4 3.1E-12 6.7E-17 100.9 8.5 135 4-151 148-286 (1281)
45 cd05857 Ig2_FGFR Second immuno 99.4 1.4E-11 3.1E-16 71.5 9.3 74 3-85 10-84 (85)
46 cd05760 Ig2_PTK7 Second immuno 99.4 1.2E-11 2.7E-16 70.4 8.8 60 5-75 1-60 (77)
47 cd05764 Ig_2 Subgroup of the i 99.4 1.8E-11 4E-16 69.2 9.4 70 3-84 2-72 (74)
48 cd04974 Ig3_FGFR Third immunog 99.4 5.6E-12 1.2E-16 74.1 7.2 78 3-86 2-89 (90)
49 cd05743 Ig_Perlecan_D2_like Im 99.3 2.4E-11 5.1E-16 69.5 9.5 63 3-75 2-64 (78)
50 cd05734 Ig7_DSCAM Seventh immu 99.3 1.9E-11 4.1E-16 70.0 9.1 66 5-75 1-66 (79)
51 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 2.4E-11 5.1E-16 69.9 9.1 70 7-83 3-77 (81)
52 PHA03376 BARF1; Provisional 99.3 8.5E-11 1.8E-15 76.0 12.4 125 3-130 27-163 (221)
53 cd04977 Ig1_NCAM-1_like First 99.3 5.1E-11 1.1E-15 70.2 10.7 64 3-75 16-79 (92)
54 cd05868 Ig4_NrCAM Fourth immun 99.3 2.3E-11 4.9E-16 69.2 8.9 73 3-86 2-75 (76)
55 cd05870 Ig5_NCAM-2 Fifth immun 99.3 4E-11 8.7E-16 71.5 10.0 80 3-85 17-97 (98)
56 cd05858 Ig3_FGFR-2 Third immun 99.3 2.5E-11 5.5E-16 71.2 8.5 82 3-86 2-89 (90)
57 cd05728 Ig4_Contactin-2-like F 99.3 3.2E-11 6.9E-16 70.1 8.6 68 3-84 15-83 (85)
58 PF07679 I-set: Immunoglobulin 99.3 8.3E-11 1.8E-15 68.9 10.4 63 3-75 16-78 (90)
59 cd05881 Ig1_Necl-2 First (N-te 99.3 1.3E-10 2.7E-15 68.5 10.9 83 2-85 12-94 (95)
60 cd05730 Ig3_NCAM-1_like Third 99.3 7.7E-11 1.7E-15 69.9 10.2 74 3-87 19-93 (95)
61 cd04978 Ig4_L1-NrCAM_like Four 99.3 3.7E-11 8E-16 68.2 8.5 73 3-86 2-75 (76)
62 cd05869 Ig5_NCAM-1 Fifth immun 99.3 5.8E-11 1.3E-15 70.7 9.6 78 3-85 18-96 (97)
63 cd05891 Ig_M-protein_C C-termi 99.3 8.5E-11 1.9E-15 69.3 10.1 63 4-75 18-80 (92)
64 cd05866 Ig1_NCAM-2 First immun 99.3 9.5E-11 2.1E-15 68.9 10.2 66 3-78 16-81 (92)
65 cd04968 Ig3_Contactin_like Thi 99.3 7.9E-11 1.7E-15 68.8 9.9 70 3-86 17-87 (88)
66 cd07702 Ig2_VEGFR-1 Second imm 99.3 5.7E-11 1.2E-15 66.5 8.5 57 6-75 2-58 (72)
67 cd05773 Ig8_hNephrin_like Eigh 99.3 1.5E-10 3.2E-15 70.4 11.0 80 3-90 24-108 (109)
68 cd05731 Ig3_L1-CAM_like Third 99.3 3.4E-11 7.3E-16 67.5 7.5 69 5-86 1-70 (71)
69 cd05765 Ig_3 Subgroup of the i 99.3 5.9E-11 1.3E-15 68.2 8.1 76 3-84 2-79 (81)
70 cd05747 Ig5_Titin_like M5, fif 99.3 1.5E-10 3.3E-15 68.2 9.9 69 3-81 19-88 (92)
71 cd05717 Ig1_Necl-1-3_like Firs 99.3 2E-10 4.4E-15 68.1 10.4 83 2-85 12-94 (95)
72 cd04972 Ig_TrkABC_d4 Fourth do 99.2 1.6E-10 3.5E-15 67.8 9.4 73 3-85 16-89 (90)
73 cd05856 Ig2_FGFRL1-like Second 99.2 6.7E-11 1.5E-15 68.1 7.6 62 2-75 9-70 (82)
74 cd05739 Ig3_RPTP_IIa_LAR_like 99.2 1.4E-10 3.1E-15 64.5 8.3 57 3-75 2-58 (69)
75 cd05732 Ig5_NCAM-1_like Fifth 99.2 2E-10 4.4E-15 68.1 9.5 78 3-85 17-95 (96)
76 cd05750 Ig_Pro_neuregulin Immu 99.2 1.4E-10 3.1E-15 65.6 8.3 64 5-75 1-65 (75)
77 cd05736 Ig2_Follistatin_like S 99.2 2.9E-10 6.4E-15 64.5 9.4 71 6-86 2-73 (76)
78 cd05740 Ig_CEACAM_D4 Fourth im 99.2 4.3E-10 9.4E-15 66.1 10.1 70 3-86 19-90 (91)
79 cd05849 Ig1_Contactin-1 First 99.2 5.1E-10 1.1E-14 66.0 10.0 61 3-76 20-81 (93)
80 cd04973 Ig1_FGFR First immunog 99.2 2.9E-10 6.3E-15 65.1 8.8 58 3-75 10-67 (79)
81 cd05724 Ig2_Robo Second immuno 99.2 4.8E-10 1E-14 65.1 9.5 61 3-75 12-73 (86)
82 cd05851 Ig3_Contactin-1 Third 99.2 4.6E-11 1E-15 69.8 5.0 65 90-156 2-66 (88)
83 cd05756 Ig1_IL1R_like First im 99.2 2.8E-10 6.1E-15 67.2 7.9 73 3-85 15-93 (94)
84 cd05874 Ig6_NrCAM Sixth immuno 99.2 7.3E-10 1.6E-14 63.1 9.3 63 5-77 1-67 (77)
85 cd05848 Ig1_Contactin-5 First 99.2 8.5E-10 1.8E-14 65.2 9.6 61 4-76 21-82 (94)
86 cd05875 Ig6_hNeurofascin_like 99.2 1E-09 2.2E-14 62.5 9.5 64 5-78 1-68 (77)
87 cd05733 Ig6_L1-CAM_like Sixth 99.1 6.5E-10 1.4E-14 63.3 8.4 63 5-77 1-67 (77)
88 cd05742 Ig1_VEGFR_like First i 99.1 8.3E-10 1.8E-14 63.9 8.6 79 3-86 2-83 (84)
89 cd05850 Ig1_Contactin-2 First 99.1 2.1E-09 4.6E-14 63.6 10.4 62 3-76 20-82 (94)
90 cd05895 Ig_Pro_neuregulin-1 Im 99.1 1.3E-09 2.8E-14 61.9 8.7 65 5-75 1-66 (76)
91 cd05722 Ig1_Neogenin First imm 99.1 2.6E-09 5.7E-14 63.3 9.5 62 3-75 15-81 (95)
92 cd05861 Ig1_PDGFR-alphabeta Fr 99.1 7E-09 1.5E-13 60.0 10.8 67 3-75 2-68 (84)
93 cd05774 Ig_CEACAM_D1 First imm 99.1 5.8E-09 1.3E-13 62.7 10.5 81 2-86 13-103 (105)
94 cd04979 Ig_Semaphorin_C Immuno 99.1 1.6E-09 3.5E-14 63.4 8.0 74 3-87 12-85 (89)
95 cd05729 Ig2_FGFR_like Second i 99.1 4.3E-09 9.3E-14 60.8 9.6 64 3-75 10-73 (85)
96 cd05718 Ig1_PVR_like First imm 99.0 1E-08 2.2E-13 61.0 10.9 78 4-81 2-90 (98)
97 cd05762 Ig8_MLCK Eighth immuno 99.0 1.1E-09 2.4E-14 65.3 6.6 59 99-157 8-70 (98)
98 cd05888 Ig1_Nectin-4_like Frst 99.0 8.6E-09 1.9E-13 61.6 10.4 82 4-85 2-96 (100)
99 cd05745 Ig3_Peroxidasin Third 99.0 5E-10 1.1E-14 63.3 4.7 52 105-156 1-53 (74)
100 cd07693 Ig1_Robo First immunog 99.0 7.2E-09 1.6E-13 61.7 9.7 79 3-86 17-99 (100)
101 cd05741 Ig_CEACAM_D1_like Firs 99.0 8E-09 1.7E-13 60.7 9.5 80 3-86 2-90 (92)
102 cd05728 Ig4_Contactin-2-like F 99.0 1.6E-09 3.4E-14 62.9 6.1 57 100-156 8-64 (85)
103 cd05878 Ig_Aggrecan_like Immun 99.0 2.3E-08 5E-13 60.8 11.4 87 1-87 1-107 (110)
104 cd05713 Ig_MOG_like Immunoglob 99.0 1.8E-08 4E-13 60.2 10.6 84 3-87 2-98 (100)
105 cd05900 Ig_Aggrecan Immunoglob 99.0 3E-08 6.5E-13 60.3 11.5 86 1-86 1-108 (112)
106 cd05758 Ig5_KIRREL3-like Fifth 99.0 1.1E-08 2.3E-13 61.0 9.4 74 3-83 17-96 (98)
107 cd05887 Ig1_Nectin-3_like Firs 99.0 2.1E-08 4.6E-13 59.2 10.5 83 4-86 2-93 (96)
108 cd05714 Ig_CSPGs_LP Immunoglob 99.0 2E-08 4.4E-13 60.7 10.7 85 2-86 2-102 (106)
109 cd04968 Ig3_Contactin_like Thi 99.0 1.4E-09 3E-14 63.6 5.2 57 100-156 10-66 (88)
110 cd05877 Ig_LP_like Immunoglobu 99.0 2E-08 4.3E-13 60.7 10.5 84 3-86 3-102 (106)
111 cd05737 Ig_Myomesin_like_C C-t 99.0 3.1E-09 6.6E-14 62.6 6.5 58 100-157 10-72 (92)
112 cd04967 Ig1_Contactin First Ig 99.0 1.1E-08 2.4E-13 60.1 8.6 60 4-75 21-81 (91)
113 cd05873 Ig_Sema4D_like Immunog 99.0 1.4E-08 3E-13 58.9 8.8 59 3-75 12-70 (87)
114 cd05871 Ig_Semaphorin_classIII 99.0 1.6E-08 3.4E-13 59.4 9.1 64 4-76 13-76 (91)
115 cd05852 Ig5_Contactin-1 Fifth 99.0 1.4E-09 3.1E-14 61.2 4.5 51 106-156 1-52 (73)
116 cd05775 Ig_SLAM-CD84_like_N N- 98.9 1.3E-08 2.9E-13 60.5 8.7 83 2-87 4-95 (97)
117 cd05886 Ig1_Nectin-1_like Firs 98.9 4.2E-08 9.2E-13 58.4 10.8 80 4-83 2-93 (99)
118 cd05845 Ig2_L1-CAM_like Second 98.9 4.7E-09 1E-13 61.7 6.5 61 4-76 20-82 (95)
119 cd05747 Ig5_Titin_like M5, fif 98.9 5.1E-09 1.1E-13 61.7 6.5 67 89-157 3-73 (92)
120 cd05730 Ig3_NCAM-1_like Third 98.9 4E-09 8.7E-14 62.4 6.1 58 99-156 11-71 (95)
121 cd05889 Ig1_DNAM-1_like First 98.9 5.5E-08 1.2E-12 57.5 10.7 83 5-87 3-94 (96)
122 cd05846 Ig1_MRC-OX-2_like Firs 98.9 3E-08 6.6E-13 58.9 9.6 78 3-80 2-88 (97)
123 cd04975 Ig4_SCFR_like Fourth i 98.9 5.8E-09 1.3E-13 62.4 6.3 59 99-157 11-79 (101)
124 cd05757 Ig2_IL1R_like Second i 98.9 1.8E-08 4E-13 59.2 8.3 58 4-75 12-74 (92)
125 cd05901 Ig_Versican Immunoglob 98.9 9.6E-08 2.1E-12 58.2 11.5 87 1-87 1-114 (117)
126 cd05894 Ig_C5_MyBP-C C5 immuno 98.9 4.6E-09 9.9E-14 61.1 5.6 58 100-157 4-66 (86)
127 cd05867 Ig4_L1-CAM_like Fourth 98.9 3.3E-09 7E-14 60.2 4.6 51 106-156 1-54 (76)
128 cd07690 Ig1_CD4 First immunogl 98.9 9.9E-09 2.1E-13 60.5 6.7 73 3-75 8-87 (94)
129 cd07702 Ig2_VEGFR-1 Second imm 98.9 2E-09 4.3E-14 60.3 3.2 49 109-157 1-50 (72)
130 cd05740 Ig_CEACAM_D4 Fourth im 98.9 6.2E-09 1.3E-13 61.1 5.4 57 99-157 11-69 (91)
131 cd05902 Ig_Neurocan Immunoglob 98.9 6.1E-08 1.3E-12 58.8 9.6 86 1-86 1-106 (110)
132 PF00047 ig: Immunoglobulin do 98.9 7.9E-08 1.7E-12 52.5 9.1 62 3-72 2-64 (64)
133 cd04969 Ig5_Contactin_like Fif 98.8 7.5E-09 1.6E-13 58.2 5.0 51 106-156 1-52 (73)
134 cd05752 Ig1_FcgammaR_like Frst 98.8 1.7E-08 3.6E-13 57.6 6.4 61 3-85 16-77 (78)
135 cd05859 Ig4_PDGFR-alpha Fourth 98.8 1.2E-08 2.6E-13 61.0 6.0 58 100-157 12-79 (101)
136 cd04972 Ig_TrkABC_d4 Fourth do 98.8 1.4E-08 3E-13 59.5 5.9 57 100-156 9-69 (90)
137 cd05868 Ig4_NrCAM Fourth immun 98.8 9.3E-09 2E-13 58.3 5.0 51 106-156 1-54 (76)
138 PF07679 I-set: Immunoglobulin 98.8 1.3E-08 2.8E-13 59.5 5.8 59 99-157 8-70 (90)
139 cd04978 Ig4_L1-NrCAM_like Four 98.8 6.7E-09 1.5E-13 58.8 4.1 51 106-156 1-54 (76)
140 cd05739 Ig3_RPTP_IIa_LAR_like 98.8 1.2E-08 2.5E-13 56.8 5.0 46 106-151 1-46 (69)
141 cd04976 Ig2_VEGFR Second immun 98.8 5.9E-09 1.3E-13 58.4 3.3 49 109-157 1-49 (71)
142 cd05727 Ig2_Contactin-2-like S 98.8 3.3E-08 7.2E-13 58.3 6.3 62 4-75 20-82 (96)
143 cd05749 Ig2_Tyro3_like Second 98.8 7.8E-08 1.7E-12 55.2 7.7 56 3-76 14-70 (81)
144 cd05743 Ig_Perlecan_D2_like Im 98.8 1.3E-08 2.7E-13 58.1 4.3 52 106-157 1-56 (78)
145 PHA02826 IL-1 receptor-like pr 98.8 4.2E-08 9.2E-13 67.1 7.6 61 3-75 145-210 (227)
146 cd05723 Ig4_Neogenin Fourth im 98.8 1.6E-08 3.5E-13 56.6 4.6 49 108-156 1-50 (71)
147 cd05872 Ig_Sema4B_like Immunog 98.8 1.3E-07 2.7E-12 54.6 8.2 70 2-86 11-80 (85)
148 cd05879 Ig_P0 Immunoglobulin ( 98.8 2.2E-07 4.8E-12 56.9 9.7 75 3-77 14-104 (116)
149 cd05863 Ig2_VEGFR-3 Second imm 98.8 1.1E-08 2.3E-13 56.5 3.5 45 109-157 1-45 (67)
150 cd04973 Ig1_FGFR First immunog 98.8 2.4E-08 5.3E-13 57.0 5.1 56 100-156 3-58 (79)
151 cd05857 Ig2_FGFR Second immuno 98.7 1.8E-08 4E-13 58.3 4.3 56 101-156 4-64 (85)
152 cd05873 Ig_Sema4D_like Immunog 98.7 4.6E-08 9.9E-13 56.8 5.9 57 100-157 5-62 (87)
153 cd05869 Ig5_NCAM-1 Fifth immun 98.7 2.9E-08 6.4E-13 59.0 5.1 66 89-156 2-76 (97)
154 cd05754 Ig3_Perlecan_like Thir 98.7 9.4E-08 2E-12 55.3 7.1 57 3-75 17-74 (85)
155 cd05891 Ig_M-protein_C C-termi 98.7 4.1E-08 8.9E-13 57.8 5.5 59 99-157 9-72 (92)
156 cd05724 Ig2_Robo Second immuno 98.7 6.1E-08 1.3E-12 56.1 6.2 57 100-156 5-64 (86)
157 smart00408 IGc2 Immunoglobulin 98.7 1.2E-07 2.7E-12 50.9 7.1 59 3-75 3-61 (63)
158 PF07686 V-set: Immunoglobulin 98.7 5.9E-07 1.3E-11 54.5 10.5 74 2-75 16-101 (114)
159 cd05862 Ig1_VEGFR First immuno 98.7 1.8E-07 3.9E-12 54.3 7.8 81 3-87 2-85 (86)
160 cd05896 Ig1_IL1RAPL-1_like Fir 98.7 1.8E-07 3.9E-12 55.6 7.7 53 16-75 40-92 (104)
161 cd05870 Ig5_NCAM-2 Fifth immun 98.7 5.5E-08 1.2E-12 57.9 5.6 57 100-156 10-77 (98)
162 cd05892 Ig_Myotilin_C C-termin 98.7 3.9E-08 8.4E-13 55.6 4.6 49 109-157 1-55 (75)
163 cd05749 Ig2_Tyro3_like Second 98.7 7.4E-08 1.6E-12 55.2 5.7 50 100-151 7-57 (81)
164 smart00409 IG Immunoglobulin. 98.7 1.1E-06 2.5E-11 50.0 10.7 64 3-75 10-73 (86)
165 smart00410 IG_like Immunoglobu 98.7 1.1E-06 2.5E-11 50.0 10.7 64 3-75 10-73 (86)
166 cd05848 Ig1_Contactin-5 First 98.7 6.9E-08 1.5E-12 57.0 5.5 52 105-156 18-72 (94)
167 cd05849 Ig1_Contactin-1 First 98.7 6.7E-08 1.5E-12 57.0 5.4 51 106-156 19-71 (93)
168 cd05732 Ig5_NCAM-1_like Fifth 98.7 4.9E-08 1.1E-12 57.8 4.9 57 100-156 10-75 (96)
169 cd05864 Ig2_VEGFR-2 Second imm 98.7 2.5E-08 5.4E-13 55.6 3.3 48 109-157 1-48 (70)
170 cd00099 IgV Immunoglobulin var 98.7 3.1E-07 6.7E-12 55.2 8.4 73 3-75 7-89 (105)
171 cd05725 Ig3_Robo Third immunog 98.7 2.6E-08 5.6E-13 55.4 3.3 48 109-156 1-48 (69)
172 cd05897 Ig2_IL1R2_like Second 98.7 9.6E-08 2.1E-12 56.3 5.8 61 4-75 12-77 (95)
173 cd05856 Ig2_FGFRL1-like Second 98.7 4.5E-08 9.7E-13 56.1 4.3 55 102-156 5-61 (82)
174 cd04983 IgV_TCR_alpha_like Imm 98.7 3.7E-07 8E-12 55.3 8.5 73 3-75 14-92 (109)
175 cd05760 Ig2_PTK7 Second immuno 98.7 4E-08 8.6E-13 55.9 4.0 48 109-156 1-51 (77)
176 cd05746 Ig4_Peroxidasin Fourth 98.7 3E-08 6.5E-13 55.1 3.4 48 109-156 1-49 (69)
177 cd05752 Ig1_FcgammaR_like Frst 98.6 1.2E-07 2.6E-12 54.0 5.8 51 100-157 9-60 (78)
178 cd05876 Ig3_L1-CAM Third immun 98.6 2.9E-08 6.2E-13 55.5 2.9 48 109-156 1-49 (71)
179 cd05753 Ig2_FcgammaR_like Seco 98.6 1.6E-07 3.5E-12 54.1 6.1 55 3-75 15-70 (83)
180 cd05893 Ig_Palladin_C C-termin 98.6 6.2E-08 1.3E-12 54.8 4.2 49 109-157 1-55 (75)
181 cd05899 IgV_TCR_beta Immunoglo 98.6 5E-07 1.1E-11 54.9 8.3 71 3-74 14-93 (110)
182 smart00406 IGv Immunoglobulin 98.6 4.8E-07 1E-11 51.5 7.7 68 5-72 2-81 (81)
183 cd05850 Ig1_Contactin-2 First 98.6 1.7E-07 3.6E-12 55.4 5.9 51 106-156 19-72 (94)
184 cd05748 Ig_Titin_like Immunogl 98.6 6.9E-08 1.5E-12 54.4 4.0 50 108-157 1-54 (74)
185 cd05759 Ig2_KIRREL3-like Secon 98.6 8.8E-07 1.9E-11 50.9 8.7 65 5-75 2-68 (82)
186 cd07693 Ig1_Robo First immunog 98.6 1.5E-07 3.3E-12 55.9 5.6 43 90-134 2-44 (100)
187 cd05738 Ig2_RPTP_IIa_LAR_like 98.6 6.9E-08 1.5E-12 54.4 3.6 49 109-157 1-52 (74)
188 cd05715 Ig_P0-like Immunoglobu 98.6 1.1E-06 2.3E-11 54.0 9.1 75 3-77 14-104 (116)
189 cd05880 Ig_EVA1 Immunoglobulin 98.6 2.4E-06 5.1E-11 52.4 10.4 75 3-77 14-103 (115)
190 cd05865 Ig1_NCAM-1 First immun 98.6 2.2E-07 4.8E-12 55.1 5.7 58 100-157 9-74 (96)
191 PF13895 Ig_2: Immunoglobulin 98.6 1.7E-06 3.8E-11 49.0 9.2 54 3-76 15-68 (80)
192 cd05885 Ig2_Necl-4 Second immu 98.6 1.5E-06 3.3E-11 49.4 8.7 63 5-75 2-65 (80)
193 cd05764 Ig_2 Subgroup of the i 98.6 2.8E-07 6E-12 51.9 5.6 51 106-156 1-53 (74)
194 cd04984 IgV_L_lambda Immunoglo 98.5 1.1E-06 2.3E-11 52.3 8.2 71 2-73 6-83 (98)
195 cd05744 Ig_Myotilin_C_like Imm 98.5 1.5E-07 3.3E-12 53.2 4.3 48 109-156 1-54 (75)
196 cd05722 Ig1_Neogenin First imm 98.5 3E-07 6.4E-12 54.4 5.5 51 100-150 8-61 (95)
197 PHA02987 Ig domain OX-2-like p 98.5 2.4E-06 5.2E-11 55.8 9.9 86 3-88 31-123 (189)
198 cd05773 Ig8_hNephrin_like Eigh 98.5 3.3E-07 7.3E-12 55.6 5.7 69 88-156 3-83 (109)
199 cd05731 Ig3_L1-CAM_like Third 98.5 1.3E-07 2.9E-12 52.7 3.6 48 109-156 1-49 (71)
200 cd05756 Ig1_IL1R_like First im 98.5 1.4E-07 2.9E-12 55.8 3.7 58 100-157 8-74 (94)
201 cd05758 Ig5_KIRREL3-like Fifth 98.5 1E-06 2.2E-11 52.4 7.1 55 100-154 10-75 (98)
202 cd05866 Ig1_NCAM-2 First immun 98.5 8.3E-07 1.8E-11 52.2 6.4 57 100-157 9-70 (92)
203 cd05898 Ig5_KIRREL3 Fifth immu 98.5 5E-06 1.1E-10 49.3 9.4 74 4-84 18-97 (98)
204 cd05726 Ig4_Robo Fhird immunog 98.5 2E-07 4.4E-12 54.6 3.5 51 106-156 1-60 (90)
205 cd04982 IgV_TCR_gamma Immunogl 98.5 2.8E-06 6.1E-11 52.1 8.7 73 2-74 13-98 (116)
206 cd04971 Ig_TrKABC_d5 Fifth dom 98.5 2.8E-07 6.1E-12 52.9 3.9 48 110-157 2-60 (81)
207 cd05763 Ig_1 Subgroup of the i 98.5 1.6E-07 3.6E-12 53.0 2.9 48 109-156 1-53 (75)
208 cd05855 Ig_TrkB_d5 Fifth domai 98.5 2.5E-07 5.5E-12 52.7 3.7 47 111-157 3-58 (79)
209 cd05735 Ig8_DSCAM Eight immuno 98.5 5.5E-07 1.2E-11 52.5 5.1 51 106-156 1-60 (88)
210 cd05860 Ig4_SCFR Fourth immuno 98.4 3E-06 6.5E-11 50.2 8.0 78 4-86 20-99 (101)
211 cd05716 Ig_pIgR Immunoglobulin 98.4 2.7E-06 5.9E-11 50.5 8.1 75 2-76 7-87 (98)
212 cd05845 Ig2_L1-CAM_like Second 98.4 9.8E-07 2.1E-11 52.0 5.7 58 99-156 11-71 (95)
213 cd05712 Ig_Siglec_N Immunoglob 98.4 2.5E-06 5.3E-11 52.6 7.6 73 2-74 14-101 (119)
214 cd04979 Ig_Semaphorin_C Immuno 98.4 8.1E-07 1.7E-11 51.9 4.8 57 100-157 5-65 (89)
215 smart00408 IGc2 Immunoglobulin 98.4 5.9E-07 1.3E-11 48.2 3.9 52 105-156 1-52 (63)
216 cd04974 Ig3_FGFR Third immunog 98.4 9.1E-07 2E-11 51.8 4.9 52 106-157 1-69 (90)
217 cd04967 Ig1_Contactin First Ig 98.4 1.8E-06 3.9E-11 50.6 6.2 52 105-156 18-72 (91)
218 cd05882 Ig1_Necl-1 First (N-te 98.4 2.7E-06 5.8E-11 50.3 6.8 58 100-157 6-76 (95)
219 cd04977 Ig1_NCAM-1_like First 98.3 1.7E-06 3.7E-11 50.8 5.5 56 100-156 9-70 (92)
220 cd04980 IgV_L_kappa Immunoglob 98.3 3.1E-06 6.7E-11 51.0 6.8 70 3-73 16-91 (106)
221 cd05858 Ig3_FGFR-2 Third immun 98.3 1.9E-06 4.1E-11 50.4 5.6 52 106-157 1-69 (90)
222 cd05733 Ig6_L1-CAM_like Sixth 98.3 6.6E-07 1.4E-11 50.8 3.5 44 109-152 1-48 (77)
223 cd05874 Ig6_NrCAM Sixth immuno 98.3 9.7E-07 2.1E-11 50.1 4.1 45 109-153 1-49 (77)
224 cd04970 Ig6_Contactin_like Six 98.3 2E-06 4.3E-11 49.7 5.4 51 107-157 1-61 (85)
225 cd05736 Ig2_Follistatin_like S 98.3 6.8E-07 1.5E-11 50.5 3.4 48 109-156 1-52 (76)
226 cd07706 IgV_TCR_delta Immunogl 98.3 5.8E-06 1.3E-10 50.7 7.7 72 3-74 15-93 (116)
227 cd05750 Ig_Pro_neuregulin Immu 98.3 6.9E-07 1.5E-11 50.3 3.3 49 109-157 1-57 (75)
228 cd05854 Ig6_Contactin-2 Sixth 98.3 2.3E-06 4.9E-11 49.6 5.4 51 107-157 1-61 (85)
229 cd05757 Ig2_IL1R_like Second i 98.3 1E-06 2.2E-11 51.8 3.6 58 100-157 4-66 (92)
230 cd05720 Ig_CD8_alpha Immunoglo 98.3 1E-05 2.3E-10 48.6 8.1 71 2-73 6-89 (104)
231 PF13927 Ig_3: Immunoglobulin 98.3 4.3E-06 9.4E-11 46.6 6.0 57 5-74 18-75 (75)
232 cd05729 Ig2_FGFR_like Second i 98.3 5.1E-06 1.1E-10 47.7 6.3 56 101-156 4-64 (85)
233 cd07701 Ig1_Necl-3 First (N-te 98.3 2.7E-06 5.9E-11 50.3 5.0 58 99-156 5-75 (95)
234 cd05754 Ig3_Perlecan_like Thir 98.3 3.6E-06 7.8E-11 48.6 5.4 55 100-156 10-65 (85)
235 cd05727 Ig2_Contactin-2-like S 98.2 3.5E-06 7.7E-11 49.7 5.3 57 100-156 12-73 (96)
236 PF00047 ig: Immunoglobulin do 98.2 1.1E-06 2.5E-11 47.8 2.8 51 106-156 1-58 (64)
237 cd05751 Ig1_LILRB1_like First 98.2 1.6E-05 3.5E-10 46.6 7.7 60 2-75 16-75 (91)
238 cd05875 Ig6_hNeurofascin_like 98.2 3.6E-06 7.9E-11 47.7 4.5 43 109-151 1-47 (77)
239 cd05765 Ig_3 Subgroup of the i 98.2 4.3E-06 9.4E-11 47.7 4.5 51 106-156 1-60 (81)
240 cd05734 Ig7_DSCAM Seventh immu 98.1 1.7E-06 3.7E-11 49.3 2.5 48 109-156 1-57 (79)
241 cd05853 Ig6_Contactin-4 Sixth 98.1 6.7E-06 1.5E-10 47.5 4.7 51 107-157 1-61 (85)
242 cd05883 Ig2_Necl-2 Second immu 98.1 8.5E-05 1.8E-09 42.5 9.0 77 5-88 2-81 (82)
243 cd05753 Ig2_FcgammaR_like Seco 98.1 9.9E-06 2.2E-10 46.6 5.3 53 100-156 8-61 (83)
244 cd05742 Ig1_VEGFR_like First i 98.1 4.1E-06 8.9E-11 48.3 3.6 51 106-156 1-62 (84)
245 cd07700 IgV_CD8_beta Immunoglo 98.1 5E-05 1.1E-09 45.9 8.5 71 3-73 7-92 (107)
246 cd05761 Ig2_Necl-1-4_like Seco 98.1 0.00013 2.7E-09 41.9 9.7 64 5-75 2-67 (82)
247 cd05861 Ig1_PDGFR-alphabeta Fr 98.0 1.2E-05 2.6E-10 46.4 4.4 51 106-156 1-59 (84)
248 PF13895 Ig_2: Immunoglobulin 98.0 3.6E-05 7.9E-10 43.4 6.2 50 101-156 9-58 (80)
249 cd07705 Ig2_Necl-1 Second immu 98.0 0.00012 2.7E-09 42.1 8.3 65 5-76 2-69 (83)
250 cd05871 Ig_Semaphorin_classIII 98.0 2.7E-05 5.9E-10 45.6 5.5 56 100-156 5-66 (91)
251 cd05895 Ig_Pro_neuregulin-1 Im 98.0 8.5E-06 1.8E-10 46.0 3.1 49 109-157 1-58 (76)
252 cd05872 Ig_Sema4B_like Immunog 98.0 1.7E-05 3.7E-10 45.7 4.3 56 100-156 5-60 (85)
253 cd05885 Ig2_Necl-4 Second immu 98.0 2.7E-05 5.8E-10 44.4 5.0 28 108-135 1-29 (80)
254 cd00096 Ig Immunoglobulin doma 97.9 4.6E-05 1E-09 41.2 5.8 64 6-75 2-65 (74)
255 cd00098 IgC Immunoglobulin Con 97.9 7.8E-05 1.7E-09 43.8 7.1 67 3-76 14-85 (95)
256 cd05898 Ig5_KIRREL3 Fifth immu 97.9 5E-05 1.1E-09 45.1 6.1 56 99-154 9-75 (98)
257 cd05717 Ig1_Necl-1-3_like Firs 97.9 5.3E-05 1.2E-09 44.6 5.8 58 99-156 5-75 (95)
258 cd04981 IgV_H Immunoglobulin ( 97.9 0.00019 4E-09 44.1 8.3 71 3-73 13-96 (117)
259 cd07694 Ig2_CD4 Second immunog 97.8 0.00038 8.3E-09 40.0 7.9 56 4-75 16-73 (88)
260 cd07690 Ig1_CD4 First immunogl 97.8 9.3E-05 2E-09 43.6 5.5 55 102-156 3-78 (94)
261 cd05884 Ig2_Necl-3 Second immu 97.8 0.00033 7.1E-09 40.3 7.4 63 6-75 3-68 (83)
262 cd05711 Ig_FcalphaRI Immunoglo 97.7 0.00026 5.7E-09 41.7 6.9 60 3-73 16-75 (94)
263 cd05883 Ig2_Necl-2 Second immu 97.7 0.00013 2.7E-09 41.8 5.3 48 109-157 2-57 (82)
264 cd05897 Ig2_IL1R2_like Second 97.7 6.5E-05 1.4E-09 44.3 3.5 57 100-156 4-68 (95)
265 cd05751 Ig1_LILRB1_like First 97.6 0.0001 2.3E-09 43.1 4.2 57 100-157 10-67 (91)
266 smart00407 IGc1 Immunoglobulin 97.6 0.0027 5.9E-08 35.6 9.6 63 6-75 3-70 (75)
267 smart00409 IG Immunoglobulin. 97.6 0.0005 1.1E-08 38.7 6.6 57 100-156 3-64 (86)
268 smart00410 IG_like Immunoglobu 97.6 0.0005 1.1E-08 38.7 6.6 57 100-156 3-64 (86)
269 KOG3515|consensus 97.6 0.00024 5.2E-09 55.9 6.3 124 9-135 121-251 (741)
270 cd05755 Ig2_ICAM-1_like Second 97.5 0.00036 7.8E-09 41.5 5.3 55 102-157 12-75 (100)
271 cd07705 Ig2_Necl-1 Second immu 97.4 0.00038 8.3E-09 40.0 4.5 26 109-134 2-28 (83)
272 cd05759 Ig2_KIRREL3-like Secon 97.4 0.0005 1.1E-08 39.2 4.8 26 108-133 1-27 (82)
273 PF13927 Ig_3: Immunoglobulin 97.4 0.00023 5.1E-09 39.4 3.3 48 108-156 17-67 (75)
274 PF08204 V-set_CD47: CD47 immu 97.3 0.00088 1.9E-08 41.6 5.5 71 3-75 28-107 (130)
275 cd05896 Ig1_IL1RAPL-1_like Fir 97.3 0.00059 1.3E-08 40.7 4.5 57 100-156 9-83 (104)
276 PHA03269 envelope glycoprotein 97.3 0.0039 8.4E-08 46.7 9.4 81 50-134 286-373 (566)
277 PHA02633 hypothetical protein; 97.3 0.00081 1.8E-08 35.8 4.4 35 54-88 19-54 (63)
278 cd05860 Ig4_SCFR Fourth immuno 97.2 0.0019 4.1E-08 38.4 6.1 58 99-156 11-78 (101)
279 cd05847 IgC_CH2_IgE CH2 domain 97.2 0.0073 1.6E-07 35.6 8.5 64 5-75 19-85 (94)
280 PF08205 C2-set_2: CD80-like C 97.2 0.0014 3.1E-08 37.9 5.3 27 106-132 14-41 (89)
281 cd05772 IgC_SIRP Signal-regula 97.2 0.00087 1.9E-08 40.7 4.5 48 86-134 2-51 (111)
282 PF08205 C2-set_2: CD80-like C 97.2 0.014 3E-07 33.7 10.7 66 4-76 16-84 (89)
283 cd04983 IgV_TCR_alpha_like Imm 97.2 0.0016 3.4E-08 39.3 5.7 57 100-156 7-83 (109)
284 cd05719 Ig2_PVR_like Second im 97.2 0.011 2.4E-07 34.8 9.1 63 5-75 18-81 (95)
285 PHA03270 envelope glycoprotein 97.2 0.0069 1.5E-07 44.8 9.6 99 52-154 181-290 (466)
286 PF07354 Sp38: Zona-pellucida- 97.1 0.00074 1.6E-08 46.6 4.1 52 11-74 7-58 (271)
287 cd07691 Ig_CD3_gamma_delta Imm 97.1 0.0029 6.4E-08 34.6 5.3 59 3-88 7-65 (69)
288 cd05884 Ig2_Necl-3 Second immu 97.1 0.002 4.3E-08 37.0 4.9 26 109-134 2-28 (83)
289 cd05761 Ig2_Necl-1-4_like Seco 97.1 0.0023 4.9E-08 36.6 5.2 25 109-133 2-27 (82)
290 cd05771 IgC_Tapasin_R Tapasin- 97.1 0.015 3.3E-07 36.7 9.3 66 4-75 55-130 (139)
291 cd07704 Ig2_Nectin-3-4_like Se 97.0 0.0016 3.4E-08 38.5 4.4 30 100-129 10-41 (97)
292 cd05711 Ig_FcalphaRI Immunoglo 97.0 0.0013 2.9E-08 38.7 4.1 57 100-157 9-69 (94)
293 cd07703 Ig2_Nectin-2_like Seco 97.0 0.024 5.2E-07 33.4 9.4 63 5-75 18-81 (95)
294 cd07699 IgC_L Immunoglobulin C 97.0 0.013 2.9E-07 34.8 8.3 64 5-75 22-88 (100)
295 cd05770 IgC_beta2m Class I maj 97.0 0.025 5.5E-07 33.2 9.3 61 5-75 20-82 (93)
296 cd05767 IgC_MHC_II_alpha Class 97.0 0.027 5.9E-07 33.1 9.6 62 5-76 20-84 (94)
297 cd05862 Ig1_VEGFR First immuno 97.0 0.0021 4.6E-08 37.1 4.4 51 106-156 1-63 (86)
298 PHA03273 envelope glycoprotein 96.9 0.018 3.8E-07 43.1 9.8 78 52-133 197-280 (486)
299 KOG3515|consensus 96.9 0.0056 1.2E-07 48.6 7.7 116 3-135 23-143 (741)
300 cd05721 IgV_CTLA-4 Immunoglobu 96.9 0.017 3.7E-07 35.1 8.0 69 4-72 15-93 (115)
301 cd05881 Ig1_Necl-2 First (N-te 96.9 0.0074 1.6E-07 35.6 6.4 58 99-156 5-75 (95)
302 cd05899 IgV_TCR_beta Immunoglo 96.9 0.0031 6.6E-08 38.1 4.9 30 99-129 6-35 (110)
303 cd05766 IgC_MHC_II_beta Class 96.8 0.034 7.3E-07 32.7 8.7 62 5-76 17-83 (94)
304 cd04982 IgV_TCR_gamma Immunogl 96.8 0.0051 1.1E-07 37.5 5.3 30 99-128 6-37 (116)
305 cd07698 IgC_MHC_I_alpha3 Class 96.8 0.043 9.3E-07 32.1 9.6 64 4-76 16-83 (93)
306 cd07696 IgC_CH3 CH3 domain (th 96.7 0.026 5.6E-07 33.3 7.9 65 5-75 19-85 (96)
307 PF07654 C1-set: Immunoglobuli 96.7 0.039 8.5E-07 31.4 9.7 63 4-76 10-77 (83)
308 cd00099 IgV Immunoglobulin var 96.7 0.0054 1.2E-07 36.5 4.7 28 102-129 2-30 (105)
309 cd00098 IgC Immunoglobulin Con 96.6 0.0035 7.7E-08 36.6 3.8 32 104-135 11-44 (95)
310 PHA03271 envelope glycoprotein 96.6 0.028 6.1E-07 41.5 8.6 81 51-135 205-292 (490)
311 cd07694 Ig2_CD4 Second immunog 96.5 0.0057 1.2E-07 35.3 4.0 54 101-156 9-64 (88)
312 cd05772 IgC_SIRP Signal-regula 96.5 0.058 1.3E-06 32.8 8.6 64 5-76 24-92 (111)
313 cd07697 IgC_TCR_gamma T cell r 96.4 0.079 1.7E-06 31.3 9.7 64 4-76 20-85 (96)
314 cd05755 Ig2_ICAM-1_like Second 96.4 0.04 8.7E-07 32.8 7.2 63 4-75 18-84 (100)
315 cd07698 IgC_MHC_I_alpha3 Class 96.3 0.015 3.3E-07 34.0 5.1 26 106-131 14-41 (93)
316 cd05774 Ig_CEACAM_D1 First imm 96.3 0.0051 1.1E-07 37.0 2.9 55 102-156 9-83 (105)
317 cd05768 IgC_CH4 CH4 domain (fo 96.2 0.046 1E-06 32.7 6.9 64 5-75 19-90 (102)
318 cd07703 Ig2_Nectin-2_like Seco 96.2 0.0081 1.8E-07 35.4 3.5 21 108-128 17-38 (95)
319 PHA02987 Ig domain OX-2-like p 96.2 0.019 4.1E-07 37.9 5.4 57 100-156 24-98 (189)
320 cd05741 Ig_CEACAM_D1_like Firs 96.2 0.0046 1E-07 35.9 2.4 51 106-156 1-70 (92)
321 cd05766 IgC_MHC_II_beta Class 96.2 0.024 5.1E-07 33.4 5.3 31 104-134 12-44 (94)
322 PF11465 Receptor_2B4: Natural 96.1 0.018 4E-07 34.3 4.7 43 41-86 62-104 (108)
323 cd07699 IgC_L Immunoglobulin C 96.1 0.0067 1.4E-07 36.1 2.9 31 103-133 14-46 (100)
324 cd05769 IgC_TCR_beta T cell re 96.0 0.0088 1.9E-07 36.6 2.9 31 104-134 16-48 (115)
325 cd05716 Ig_pIgR Immunoglobulin 95.9 0.022 4.9E-07 33.5 4.5 56 101-156 2-77 (98)
326 cd04986 IgC_CH2 CH2 domain (se 95.8 0.1 2.2E-06 31.0 6.9 65 4-75 23-88 (99)
327 cd07692 Ig_CD3_epsilon Immunog 95.8 0.051 1.1E-06 29.5 5.0 46 4-73 9-54 (65)
328 cd07696 IgC_CH3 CH3 domain (th 95.8 0.043 9.3E-07 32.4 5.2 30 103-132 11-43 (96)
329 cd05767 IgC_MHC_II_alpha Class 95.7 0.03 6.6E-07 32.9 4.5 28 106-133 15-44 (94)
330 smart00407 IGc1 Immunoglobulin 95.6 0.054 1.2E-06 30.3 5.1 24 109-132 2-27 (75)
331 cd05719 Ig2_PVR_like Second im 95.6 0.019 4.1E-07 33.9 3.3 21 108-128 17-38 (95)
332 cd05768 IgC_CH4 CH4 domain (fo 95.5 0.013 2.7E-07 35.1 2.3 29 105-133 15-45 (102)
333 cd05769 IgC_TCR_beta T cell re 95.5 0.3 6.4E-06 29.9 8.9 65 5-76 21-92 (115)
334 cd05775 Ig_SLAM-CD84_like_N N- 95.4 0.025 5.3E-07 33.4 3.3 52 105-156 3-74 (97)
335 cd04985 IgC_CH1 CH1 domain (fi 95.4 0.22 4.7E-06 29.4 7.3 64 5-76 19-87 (95)
336 cd05770 IgC_beta2m Class I maj 95.3 0.034 7.5E-07 32.6 3.7 29 105-133 14-44 (93)
337 cd04980 IgV_L_kappa Immunoglob 95.1 0.065 1.4E-06 32.0 4.7 29 100-128 9-38 (106)
338 cd07700 IgV_CD8_beta Immunoglo 95.1 0.071 1.5E-06 32.0 4.8 28 102-129 2-30 (107)
339 cd07697 IgC_TCR_gamma T cell r 95.0 0.033 7.3E-07 32.9 3.0 28 106-133 16-45 (96)
340 cd05847 IgC_CH2_IgE CH2 domain 95.0 0.11 2.4E-06 30.5 5.2 27 106-132 14-42 (94)
341 PHA02914 Immunoglobulin-like d 94.9 0.11 2.3E-06 38.5 5.8 43 51-93 79-121 (500)
342 cd00096 Ig Immunoglobulin doma 94.8 0.063 1.4E-06 28.2 3.7 48 109-156 1-56 (74)
343 cd05900 Ig_Aggrecan Immunoglob 94.7 0.12 2.7E-06 31.4 5.0 52 105-156 1-87 (112)
344 cd07706 IgV_TCR_delta Immunogl 94.7 0.14 3.1E-06 31.1 5.4 29 100-128 8-37 (116)
345 PF07654 C1-set: Immunoglobuli 94.7 0.089 1.9E-06 29.9 4.2 28 105-132 7-36 (83)
346 cd07689 Ig2_VCAM-1 Second immu 94.6 0.12 2.6E-06 30.6 4.7 31 103-133 12-45 (99)
347 cd07704 Ig2_Nectin-3-4_like Se 94.3 0.62 1.4E-05 27.6 7.9 60 8-75 24-83 (97)
348 cd05714 Ig_CSPGs_LP Immunoglob 94.2 0.26 5.6E-06 29.4 5.8 24 105-128 1-30 (106)
349 cd05715 Ig_P0-like Immunoglobu 93.8 0.32 6.9E-06 29.6 5.6 29 100-128 7-39 (116)
350 cd04984 IgV_L_lambda Immunoglo 93.5 0.13 2.8E-06 30.3 3.4 28 102-129 2-31 (98)
351 cd04985 IgC_CH1 CH1 domain (fi 93.3 0.19 4.2E-06 29.6 3.9 26 106-131 16-43 (95)
352 cd05879 Ig_P0 Immunoglobulin ( 93.3 0.36 7.8E-06 29.6 5.2 57 100-156 7-93 (116)
353 cd05878 Ig_Aggrecan_like Immun 93.2 0.34 7.3E-06 29.3 5.0 23 106-128 2-34 (110)
354 cd05880 Ig_EVA1 Immunoglobulin 93.2 0.51 1.1E-05 28.7 5.8 29 99-127 6-38 (115)
355 cd05720 Ig_CD8_alpha Immunoglo 92.4 0.25 5.5E-06 29.5 3.6 27 103-129 3-29 (104)
356 cd05718 Ig1_PVR_like First imm 92.4 0.32 6.9E-06 28.4 4.1 50 107-156 1-75 (98)
357 PHA02982 hypothetical protein; 92.4 2.5 5.3E-05 28.8 10.3 72 51-130 98-172 (251)
358 KOG4597|consensus 92.1 0.26 5.7E-06 37.3 4.0 66 3-75 212-279 (560)
359 cd05713 Ig_MOG_like Immunoglob 91.8 0.7 1.5E-05 27.1 5.1 24 106-129 1-27 (100)
360 cd04986 IgC_CH2 CH2 domain (se 91.7 0.24 5.1E-06 29.5 2.8 27 105-131 18-47 (99)
361 cd04981 IgV_H Immunoglobulin ( 91.4 0.64 1.4E-05 28.4 4.7 30 100-129 6-37 (117)
362 KOG1480|consensus 91.3 0.079 1.7E-06 42.3 0.7 54 9-75 152-205 (909)
363 cd05846 Ig1_MRC-OX-2_like Firs 91.3 0.51 1.1E-05 27.6 4.1 24 106-129 1-25 (97)
364 PHA03042 CD47-like protein; Pr 90.8 4.5 9.7E-05 28.7 9.1 54 4-74 33-91 (286)
365 cd05902 Ig_Neurocan Immunoglob 90.6 1.1 2.3E-05 27.2 5.0 15 142-156 71-85 (110)
366 PF07686 V-set: Immunoglobulin 90.0 0.88 1.9E-05 26.9 4.4 30 99-128 9-39 (114)
367 PF05790 C2-set: Immunoglobuli 89.2 2.7 5.9E-05 23.9 8.3 21 54-74 44-64 (80)
368 PHA02914 Immunoglobulin-like d 88.6 8.7 0.00019 28.9 10.3 73 51-132 344-421 (500)
369 PHA03052 Hypothetical protein; 87.9 3 6.5E-05 22.8 5.7 34 100-133 6-42 (69)
370 cd05877 Ig_LP_like Immunoglobu 87.1 1.3 2.7E-05 26.3 3.7 25 105-129 1-31 (106)
371 cd05901 Ig_Versican Immunoglob 83.8 4.2 9.2E-05 25.0 4.8 15 142-156 78-92 (117)
372 cd05712 Ig_Siglec_N Immunoglob 83.4 3.8 8.1E-05 25.0 4.6 30 100-129 8-43 (119)
373 PHA03240 envelope glycoprotein 82.1 4.7 0.0001 27.5 4.8 21 52-72 104-124 (258)
374 PHA03282 envelope glycoprotein 81.0 5.7 0.00012 30.4 5.4 47 40-91 116-163 (540)
375 PHA03282 envelope glycoprotein 77.6 7.2 0.00016 29.9 5.0 26 51-76 331-356 (540)
376 PF02480 Herpes_gE: Alphaherpe 74.5 9.4 0.0002 29.3 5.1 24 53-76 269-292 (439)
377 PF02440 Adeno_E3_CR1: Adenovi 74.0 9.1 0.0002 20.7 3.6 49 104-156 3-63 (63)
378 PF06832 BiPBP_C: Penicillin-B 73.8 14 0.00031 21.1 5.2 24 108-132 31-54 (89)
379 PF02480 Herpes_gE: Alphaherpe 73.6 3.1 6.7E-05 31.8 2.4 75 54-128 90-190 (439)
380 cd05721 IgV_CTLA-4 Immunoglobu 73.5 11 0.00024 23.1 4.3 29 100-128 7-38 (115)
381 PHA02865 MHC-like TNF binding 72.1 27 0.00058 25.8 6.7 18 59-76 287-304 (338)
382 PF06328 Lep_receptor_Ig: Ig-l 71.4 15 0.00033 21.3 4.5 33 100-132 12-49 (89)
383 PHA02865 MHC-like TNF binding 70.2 10 0.00022 28.0 4.2 21 108-128 216-238 (338)
384 KOG0613|consensus 68.3 22 0.00047 30.9 6.2 79 53-131 278-375 (1205)
385 PHA03286 envelope glycoprotein 66.6 17 0.00038 27.8 4.9 24 54-77 308-331 (492)
386 PHA02935 Hypothetical protein; 65.9 31 0.00066 23.5 5.5 64 54-117 103-166 (349)
387 PF01688 Herpes_gI: Alphaherpe 65.2 35 0.00075 22.4 5.5 25 51-75 122-146 (161)
388 PHA03286 envelope glycoprotein 61.2 75 0.0016 24.6 9.6 75 54-128 128-226 (492)
389 PHA03283 envelope glycoprotein 59.9 85 0.0019 24.8 9.1 74 54-128 135-234 (542)
390 PHA03290 envelope glycoprotein 59.8 42 0.00092 24.7 5.6 38 51-88 127-165 (357)
391 PHA03283 envelope glycoprotein 58.9 29 0.00062 27.2 4.9 26 51-76 313-338 (542)
392 PHA03270 envelope glycoprotein 53.2 1E+02 0.0023 23.8 9.7 61 67-132 299-361 (466)
393 PF11049 KSHV_K1: Glycoprotein 52.2 25 0.00053 19.2 2.7 24 110-135 2-25 (71)
394 PHA03292 envelope glycoprotein 51.2 77 0.0017 23.9 5.9 37 51-87 126-163 (413)
395 PHA03281 envelope glycoprotein 50.7 49 0.0011 26.3 5.0 25 52-76 474-498 (642)
396 PF03921 ICAM_N: Intercellular 47.9 56 0.0012 19.1 5.4 51 100-152 12-62 (91)
397 PHA03289 envelope glycoprotein 46.5 92 0.002 23.0 5.6 37 51-87 120-157 (352)
398 KOG0200|consensus 44.3 88 0.0019 25.3 5.9 22 53-74 13-34 (609)
399 KOG0613|consensus 38.2 37 0.00079 29.7 3.0 76 54-130 394-478 (1205)
400 KOG3611|consensus 36.8 1.1E+02 0.0025 25.4 5.4 23 54-76 613-635 (737)
401 PHA03291 envelope glycoprotein 36.1 1.7E+02 0.0037 22.0 5.6 37 51-87 127-164 (401)
402 PF11327 DUF3129: Protein of u 35.2 94 0.002 20.9 4.1 25 51-75 91-115 (184)
403 PHA03281 envelope glycoprotein 32.7 2.6E+02 0.0057 22.5 9.3 75 54-128 299-395 (642)
404 PHA01327 hypothetical protein 27.0 34 0.00074 16.7 0.7 11 151-161 24-34 (49)
405 PHA03269 envelope glycoprotein 24.6 3.6E+02 0.0079 21.5 10.3 62 66-131 407-470 (566)
406 TIGR00864 PCC polycystin catio 24.5 7.3E+02 0.016 24.9 10.2 70 60-130 1834-1906(2740)
407 cd05890 Ig2_Nectin-1_like Seco 22.9 1.8E+02 0.0039 17.3 7.4 60 7-74 25-85 (98)
408 PF02063 MARCKS: MARCKS family 22.3 31 0.00067 24.7 0.1 6 157-162 133-138 (294)
409 KOG2422|consensus 21.8 29 0.00062 27.7 -0.1 15 147-161 84-98 (665)
410 PF11781 RRN7: RNA polymerase 20.5 53 0.0012 15.4 0.7 10 62-71 20-29 (36)
411 TIGR02572 LcrR type III secret 20.0 64 0.0014 20.4 1.1 19 143-161 121-139 (139)
No 1
>KOG3513|consensus
Probab=99.85 E-value=8.8e-20 Score=142.41 Aligned_cols=139 Identities=25% Similarity=0.383 Sum_probs=116.3
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
..+.|.|.+.+.|.|+|.|.|.++..+ .+|......+ ..|.|.+++.+|+|.|.|.+.|. +.....
T Consensus 257 ~~v~LECfA~G~P~P~i~W~k~~g~~~----------~~r~~~~~~~---~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~ 323 (1051)
T KOG3513|consen 257 QSVKLECFALGNPTPQIKWRKVDGKPP----------PRRATYSNYG---KVLKIPNVQYEDAGEYECIAENSRGSATHS 323 (1051)
T ss_pred CeEEEEEEecCCCCCcEEEEeCCCCCC----------Ccceeeeccc---cEEEecccCcCCCeEEEEEEecccccceee
Confidence 479999999999999999999877543 1222222222 28999999999999999999776 667778
Q ss_pred EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCC---ceEEeceEEEEcchhhhHh
Q psy16425 82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGN---GQEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~---~~~~~~~l~i~~v~~~~~~ 156 (163)
..+.|..+|.++..+ ....+..|+++.|.|.+.|.|.|.+.|++|+.++....+ .....+.|+|.+|+..|.+
T Consensus 324 ~~v~v~a~P~w~~~~--~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg 399 (1051)
T KOG3513|consen 324 GHVTVYAPPYWLQKP--QDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSG 399 (1051)
T ss_pred EEEEEecCchhhccc--ceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCe
Confidence 889999999998855 467788899999999999999999999999999987766 5568899999999988764
No 2
>KOG3513|consensus
Probab=99.80 E-value=2e-18 Score=135.00 Aligned_cols=145 Identities=22% Similarity=0.388 Sum_probs=117.7
Q ss_pred cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceE
Q psy16425 2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQ 80 (163)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~ 80 (163)
..++.+.|.+.+.|.|.|.|++ ++.++... ....|+.+... .|.|.+++..|+|.|.|.+.|. +....
T Consensus 346 gs~v~~eC~a~g~P~p~v~Wlk-Ng~pl~~~-----~r~~~~~i~~g-----~L~is~v~~~dsg~YQC~A~Nk~G~i~a 414 (1051)
T KOG3513|consen 346 GSNVTLECKASGKPNPTVKWLK-NGEPLEPA-----ERDPRYKIDDG-----TLIISNVQESDSGVYQCIAENKYGTIYA 414 (1051)
T ss_pred CCCeEEEEEecCCCCCceEEee-CCeecCcc-----CCCcceEEeCC-----EEEEEecccccCeEEEeeeecccceEee
Confidence 4579999999999999999999 67666321 22233555543 8999999999999999999776 77778
Q ss_pred eEEEEEEcC-CcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-EeceEEEEcchhhhHhh
Q psy16425 81 VGYLEVVVP-PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-DFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 81 ~~~l~v~~~-p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-~~~~l~i~~v~~~~~~~ 157 (163)
.+.|.|... |.+...+......+..|..+.+.|...+.|.|.+.|.+.+..+....+... .++.|.|.+++++|.+|
T Consensus 415 nA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~ 493 (1051)
T KOG3513|consen 415 NAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGK 493 (1051)
T ss_pred eeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcE
Confidence 889998865 666665554456678899999999999999999999999986666666664 88999999999999886
No 3
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.78 E-value=1.2e-17 Score=113.55 Aligned_cols=97 Identities=15% Similarity=0.232 Sum_probs=71.8
Q ss_pred EEEEEcccCCCCCeEEEEEEEeCC-CceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEec-----cCCCCeEEEE
Q psy16425 53 WYLHIREVRESDRGWYMCQVNTDP-MKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAAS-----GSPKPNITWR 126 (163)
Q Consensus 53 ~~L~i~~v~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-----~~p~p~v~W~ 126 (163)
.+|.|.+++.+|+|.|.|.+.+.. .....+.|.|..++ ....+.+|+++.|.|.+. +.|.|.++|+
T Consensus 98 ~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~--------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~Wy 169 (227)
T PHA02826 98 ENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGT--------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWY 169 (227)
T ss_pred CeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCC--------ccceEecCCCEEEEeeCCCCccccCCCceEEEE
Confidence 489999999999999999997753 33344444443211 234567899999999985 3467899999
Q ss_pred ECCeEEEecCCceE--EeceEEEEcchhhhHhh
Q psy16425 127 REGGELIAQGNGQE--DFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 127 ~~~~~~~~~~~~~~--~~~~l~i~~v~~~~~~~ 157 (163)
+++.++....+... .++.|.|.+|+++|++.
T Consensus 170 Kng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~ 202 (227)
T PHA02826 170 KNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGI 202 (227)
T ss_pred ECCEECCCCCCEEEeCCCCEEEECcCCHHhCEE
Confidence 99998865544332 44689999999999874
No 4
>KOG4194|consensus
Probab=99.77 E-value=3.5e-18 Score=126.60 Aligned_cols=142 Identities=18% Similarity=0.322 Sum_probs=115.1
Q ss_pred eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425 5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY 83 (163)
Q Consensus 5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~ 83 (163)
..+.|.+.+.|.|+|.|.|.++..... ....|+++....+ .+.|.||+.+|.|.|+|.+++. |..+..+.
T Consensus 630 Arl~CaAtG~P~PeIawqkdggtdFPA------A~eRRl~Vmpedd---~f~Itnvk~eD~GiYtC~A~n~AG~isanAt 700 (873)
T KOG4194|consen 630 ARLECAATGHPRPEIAWQKDGGTDFPA------ARERRLHVMPEDD---VFFITNVKIEDQGIYTCTAQNVAGQISANAT 700 (873)
T ss_pred eeeeeeccCCCCcceeehhcCCCCCch------hhhheeeecCCCC---EEEEecccccccceeEEeeeccccceeeceE
Confidence 467899999999999999955432221 4557888877664 7999999999999999999776 67788899
Q ss_pred EEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCC-CeEEEEECCeEEEecCCce--EEeceEEEEcchhhhHhh
Q psy16425 84 LEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPK-PNITWRREGGELIAQGNGQ--EDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 84 l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-p~v~W~~~~~~~~~~~~~~--~~~~~l~i~~v~~~~~~~ 157 (163)
|.|...|.+.... ....+..|+.+.|+|.+.+.|+ |+..|+++++++....+.. .++..+.+.++.-+|+++
T Consensus 701 L~V~e~p~f~~PL--~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~ 775 (873)
T KOG4194|consen 701 LTVLETPSFSIPL--EDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGI 775 (873)
T ss_pred EEEecCCcccccc--cceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcce
Confidence 9999988877643 4677888999999999999887 9999999999987766444 366778888888888765
No 5
>KOG4221|consensus
Probab=99.74 E-value=5.5e-17 Score=127.46 Aligned_cols=138 Identities=22% Similarity=0.401 Sum_probs=109.3
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
.+++|.|++.+.|+|.|.|.+ ++..+.. ...|+.++..+ +|.|.+++..|+|.|+|++.+. -.....
T Consensus 253 ~~v~leCvvs~~p~p~v~Wlr-ng~~i~~-------ds~rivl~g~~----slliS~a~~~dSg~YtC~Atn~~D~idas 320 (1381)
T KOG4221|consen 253 DDVVLECVVSGVPKPSVKWLR-NGEKISV-------DSYRIVLVGGS----SLLISNATDDDSGKYTCRATNTNDSIDAS 320 (1381)
T ss_pred CcEEEEEEecCCCCCceEEee-CCeeeee-------cceEEEEeccc----ceEEeccccccCceEEEEecCCCcccccc
Confidence 479999999999999999999 6666643 22456666544 8999999999999999999764 234455
Q ss_pred EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-EeceEEEEcchhhh
Q psy16425 82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-DFPFFKRTKKKKKK 154 (163)
Q Consensus 82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-~~~~l~i~~v~~~~ 154 (163)
+.+.|..+|.++..+. .....++.++.|.|.+.|.|.|.+.|++||..+.+++.... .++.+.|..+-+.|
T Consensus 321 aev~V~a~P~~~~~p~--~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sd 392 (1381)
T KOG4221|consen 321 AEVTVLAPPGFTKAPT--TLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSD 392 (1381)
T ss_pred eEEEEEcCCCCCCCCc--ceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEeccc
Confidence 6889999999888764 66778899999999999999999999999999887766654 33447776655544
No 6
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.64 E-value=2.3e-14 Score=102.89 Aligned_cols=135 Identities=21% Similarity=0.345 Sum_probs=87.9
Q ss_pred eeEEEeee-----eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CC
Q psy16425 4 RMLIEIGE-----MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PM 77 (163)
Q Consensus 4 ~~~~~~~~-----~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~ 77 (163)
+..+.|.. .+.|.+.|+|++ +.. + ...|+.....+ .|.|.+++.+|+|.|+|.+.+. +.
T Consensus 138 ~~~i~C~~~~~~~~~~~~~~i~W~k-~~~-~---------~~~r~~~~~~~----~L~i~~v~~~d~G~Y~C~~~n~~g~ 202 (326)
T PHA02785 138 TGEMVCPNINAFIASNVNADIIWSG-HRR-L---------RNKRLKQRTPG----IITIEDVRKNDAGYYTCVLKYIYGD 202 (326)
T ss_pred cEEEECCChhhcccCCCCceEEEcc-CCc-c---------CCcceEecCCC----eEEEeecChhhCeEEEEEEEeccCC
Confidence 34556642 256889999987 332 1 22344443333 7999999999999999999765 22
Q ss_pred ce----EeEEEEEEc---CCcccccCCCCcEEEeCCCcEEEEeEeccCCCC---eEEEEECCeEEEecCC-----ce---
Q psy16425 78 KS----QVGYLEVVV---PPDILDYPTSTDMVIREGSNVTLKCAASGSPKP---NITWRREGGELIAQGN-----GQ--- 139 (163)
Q Consensus 78 ~~----~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p---~v~W~~~~~~~~~~~~-----~~--- 139 (163)
.. ..+.|.|.. +|.+ ..| ....+..|+.+.|.|.+.|.|.+ .+.|++||..+...+. ..
T Consensus 203 ~~~~~t~~v~l~V~~~~~pp~~-~~p--~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~ 279 (326)
T PHA02785 203 KTYNVTRIVKLEVRDRIIPPTM-QLP--EGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVAN 279 (326)
T ss_pred EEEeEEEEEEEEEeccCCCcee-cCC--CcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEec
Confidence 21 223344432 2222 222 35566789999999999998864 7999999987643210 00
Q ss_pred ---------EEeceEEEEcchhhhHh
Q psy16425 140 ---------EDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 140 ---------~~~~~l~i~~v~~~~~~ 156 (163)
...+.|+|.+|+.+|.+
T Consensus 280 ~~~~~~~~~~~~~~L~I~~V~~~D~G 305 (326)
T PHA02785 280 KIYTTDKRRVITSRLNINPVKEEDAT 305 (326)
T ss_pred CccccccceeeeEEEEECCcchhcCe
Confidence 12457999999999975
No 7
>KOG4221|consensus
Probab=99.62 E-value=1.6e-14 Score=114.01 Aligned_cols=140 Identities=27% Similarity=0.439 Sum_probs=107.3
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC--ceE
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM--KSQ 80 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~--~~~ 80 (163)
..+++.|...+.|.+.|.|.+ +..++ ..+.|+.+..++ .|.|.++++.|.|.|.|.+.+.+. .+.
T Consensus 156 ~ta~f~c~vn~e~~p~i~w~k-n~~pl--------~~~~r~i~lpsG----~L~I~~~qp~d~g~yrc~vt~g~~~r~S~ 222 (1381)
T KOG4221|consen 156 QTALFSCEVNAEPVPTIMWLK-NDQPL--------PLDSRVIVLPSG----ALEISGLQPSDTGEYRCVVTGGASQRTSN 222 (1381)
T ss_pred CcEEEEEEEcCccCceeEEec-ccccc--------cCCCcEEEcCCC----cEEecccccCCCceEEEEEecCCcCCccc
Confidence 457888988889999999999 44544 334577777776 899999999999999999976532 355
Q ss_pred eEEEEEEcCCc------ccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce--EEeceEEEEcchh
Q psy16425 81 VGYLEVVVPPD------ILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ--EDFPFFKRTKKKK 152 (163)
Q Consensus 81 ~~~l~v~~~p~------~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~--~~~~~l~i~~v~~ 152 (163)
.+.|.+...|. +...+ ....+.+|+++.|.|.+.+.|.|.|.|.+|+..+..+.... ..++.|.|.+++-
T Consensus 223 ~a~ltv~s~~~~~~~~~fl~~p--~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~ 300 (1381)
T KOG4221|consen 223 EAELTVLSDPGALNKLVFLDEP--SNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATD 300 (1381)
T ss_pred eeEEEecCCcccccceeeecCC--CccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEecccc
Confidence 66777763332 22222 35667889999999999999999999999999887664222 3578899999999
Q ss_pred hhHhh
Q psy16425 153 KKKKK 157 (163)
Q Consensus 153 ~~~~~ 157 (163)
+|+++
T Consensus 301 ~dSg~ 305 (1381)
T KOG4221|consen 301 DDSGK 305 (1381)
T ss_pred ccCce
Confidence 98775
No 8
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.60 E-value=1.9e-14 Score=81.53 Aligned_cols=73 Identities=18% Similarity=0.372 Sum_probs=54.7
Q ss_pred eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425 5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY 83 (163)
Q Consensus 5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~ 83 (163)
+.|.|...+.|.|.|.|+| ++..+. ....|+.+.....+..+|.|.+++.+|+|.|+|.+.|. +.....+.
T Consensus 1 v~l~C~v~G~P~P~i~W~k-~~~~i~-------~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~ 72 (75)
T cd05892 1 VKLECQISAIPPPKIFWKR-NNEMVQ-------YNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHAR 72 (75)
T ss_pred CEEEEEEEecCCCeEEEEE-CCEECc-------CCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEE
Confidence 4688999999999999999 555542 12346666555445568999999999999999999776 55555555
Q ss_pred EE
Q psy16425 84 LE 85 (163)
Q Consensus 84 l~ 85 (163)
|.
T Consensus 73 L~ 74 (75)
T cd05892 73 LD 74 (75)
T ss_pred Ee
Confidence 54
No 9
>KOG4194|consensus
Probab=99.60 E-value=7.4e-15 Score=109.32 Aligned_cols=152 Identities=22% Similarity=0.409 Sum_probs=105.6
Q ss_pred cceeEEEeeeec--cCCCEEEEEEcCCceEEeeeee---EEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 2 AARMLIEIGEML--MAESTVAWLRVDTQTILTIQTH---VITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 2 ~~~~~~~~~~~~--~~~~~i~W~k~~~~~~~~~~~~---~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
++++.+.|.+.+ ..+..|.|.+. +....-...+ .+....|-...+.. .....|++.||+..|+|.|.|.+.|.
T Consensus 518 g~nirftC~a~sssasplsi~WR~d-nevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~ 596 (873)
T KOG4194|consen 518 GENIRFTCNAYSSSASPLSIEWRKD-NEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNH 596 (873)
T ss_pred ccceEEEEEeccCCCCCceeEeeec-cccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecc
Confidence 346677777655 66778899994 3322111111 11111121111111 13347999999999999999999877
Q ss_pred -C-CceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCc-e----EEeceEEEE
Q psy16425 76 -P-MKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG-Q----EDFPFFKRT 148 (163)
Q Consensus 76 -~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~-~----~~~~~l~i~ 148 (163)
| .-+..+.+.|...|.+...| ...++..|+.++|.|.+.|.|.|+|.|.++|+.--+..+. . .+...|.|.
T Consensus 597 FGStysqk~KltV~~~PsFtktP--~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~It 674 (873)
T KOG4194|consen 597 FGSTYSQKAKLTVNQAPSFTKTP--EDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFIT 674 (873)
T ss_pred cCcchhheeEEEeeccCccccCc--ccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEe
Confidence 3 34677899999999999877 4778999999999999999999999999998762222111 1 156789999
Q ss_pred cchhhhHh
Q psy16425 149 KKKKKKKK 156 (163)
Q Consensus 149 ~v~~~~~~ 156 (163)
+|+.+|.+
T Consensus 675 nvk~eD~G 682 (873)
T KOG4194|consen 675 NVKIEDQG 682 (873)
T ss_pred cccccccc
Confidence 99999875
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.58 E-value=5.3e-14 Score=101.01 Aligned_cols=135 Identities=14% Similarity=0.175 Sum_probs=87.4
Q ss_pred eeEEEeee-----eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CC
Q psy16425 4 RMLIEIGE-----MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PM 77 (163)
Q Consensus 4 ~~~~~~~~-----~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~ 77 (163)
.+++.|.. .+.|.+.|.|+|.+. .. .+......+ ..|.|.++..+|+|.|+|.+.|. +.
T Consensus 43 ~~~l~C~~~~~~~~g~p~~~i~W~K~g~-~~-----------~~~~~~~~g---~~l~i~~~~~~DsG~Y~C~a~N~~g~ 107 (326)
T PHA02785 43 PVILPCPQINTLSSGYNILDILWEKRGA-DN-----------DRIIPIDNG---SNMLILNPTQSDSGIYICITKNETYC 107 (326)
T ss_pred CEEEECCCccccccCCCCceEEEEECCC-cc-----------ceEEEccCC---ceEEEcccCcccCeEEEEEEECCCcc
Confidence 36667764 578889999999532 11 011111111 15889999999999999999776 34
Q ss_pred ceEeEEEEEEcCC--cccccCCCCcEEEeCCCcEEEEeE-----eccCCCCeEEEEECCeEEEecCCce-EEeceEEEEc
Q psy16425 78 KSQVGYLEVVVPP--DILDYPTSTDMVIREGSNVTLKCA-----ASGSPKPNITWRREGGELIAQGNGQ-EDFPFFKRTK 149 (163)
Q Consensus 78 ~~~~~~l~v~~~p--~~~~~~~~~~~~~~~g~~~~l~C~-----~~~~p~p~v~W~~~~~~~~~~~~~~-~~~~~l~i~~ 149 (163)
....+.|.|.... .+...+ ....+.+|..+.+.|. ..+.|+|.+.|+++. .+ ...+.. ..++.|.|.+
T Consensus 108 ~~~s~~L~V~~~~~~~~~~~~--~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~-~~~r~~~~~~~~L~i~~ 183 (326)
T PHA02785 108 DMMSLNLTIVSVSESNIDLIS--YPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RL-RNKRLKQRTPGIITIED 183 (326)
T ss_pred eEEEEEEEEEecCCCccceee--ccceecccCcEEEECCChhhcccCCCCceEEEccCC-cc-CCcceEecCCCeEEEee
Confidence 4555667665432 222111 2344668999999997 236789999998754 22 222222 2356899999
Q ss_pred chhhhHhh
Q psy16425 150 KKKKKKKK 157 (163)
Q Consensus 150 v~~~~~~~ 157 (163)
|+.+|++.
T Consensus 184 v~~~d~G~ 191 (326)
T PHA02785 184 VRKNDAGY 191 (326)
T ss_pred cChhhCeE
Confidence 99999864
No 11
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.55 E-value=7.9e-14 Score=79.03 Aligned_cols=73 Identities=15% Similarity=0.360 Sum_probs=52.9
Q ss_pred eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425 5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY 83 (163)
Q Consensus 5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~ 83 (163)
+.+.|...+.|.|.|.|+| ++..+. ....|+.+.....+..+|.|.+++++|+|.|+|.+.|. +..+..+.
T Consensus 1 v~l~C~v~G~P~P~v~W~k-~~~~l~-------~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~ 72 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKK-ENESLT-------HNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTAR 72 (75)
T ss_pred CEEEEEEeEecCCEEEEEE-CCEECC-------CCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEE
Confidence 4688999999999999999 444432 12345655544434447999999999999999999776 44455555
Q ss_pred EE
Q psy16425 84 LE 85 (163)
Q Consensus 84 l~ 85 (163)
|.
T Consensus 73 L~ 74 (75)
T cd05893 73 LD 74 (75)
T ss_pred Ee
Confidence 54
No 12
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.54 E-value=1e-13 Score=78.18 Aligned_cols=70 Identities=23% Similarity=0.434 Sum_probs=53.7
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
.++.+.|...+.|.|.|.|+| ++..+ ....|+.+...+ +|.|.+++.+|+|.|+|.+.|. +.....
T Consensus 2 ~~~~l~C~~~g~P~p~v~W~k-~~~~l--------~~~~r~~~~~~g----~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 68 (73)
T cd05852 2 GRVIIECKPKAAPKPKFSWSK-GTELL--------VNNSRISIWDDG----SLEILNITKLDEGSYTCFAENNRGKANST 68 (73)
T ss_pred CeEEEEEecceeCCCEEEEEe-CCEec--------ccCCCEEEcCCC----EEEECcCChhHCEEEEEEEECCCCceeEE
Confidence 478999999999999999999 45443 223566665544 8999999999999999999776 444555
Q ss_pred EEEE
Q psy16425 82 GYLE 85 (163)
Q Consensus 82 ~~l~ 85 (163)
+.|.
T Consensus 69 ~~l~ 72 (73)
T cd05852 69 GVLS 72 (73)
T ss_pred EEEE
Confidence 5554
No 13
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.52 E-value=3e-13 Score=76.74 Aligned_cols=73 Identities=16% Similarity=0.343 Sum_probs=53.4
Q ss_pred eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425 5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY 83 (163)
Q Consensus 5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~ 83 (163)
+.|.|...+.|.|.|.|+| ++..+. ....|+.+.....+..+|.|.+++.+|+|.|+|.+.|. +.....+.
T Consensus 1 v~L~C~v~G~P~P~v~W~k-~~~~i~-------~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 72 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKK-NNEMLT-------YNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNAR 72 (75)
T ss_pred CEEEEEEeecCCCeEEEEE-CCEECC-------CCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEE
Confidence 4688999999999999999 555542 12345665554444557999999999999999999776 44445555
Q ss_pred EE
Q psy16425 84 LE 85 (163)
Q Consensus 84 l~ 85 (163)
|.
T Consensus 73 l~ 74 (75)
T cd05744 73 LD 74 (75)
T ss_pred Ee
Confidence 54
No 14
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.52 E-value=7.6e-13 Score=78.30 Aligned_cols=83 Identities=20% Similarity=0.355 Sum_probs=61.5
Q ss_pred cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425 2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQV 81 (163)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~ 81 (163)
...+.|.|...+.|.+.|.|++.++. +...+......+.|+.+.......++|.|.+++.+|+|.|+|.+.........
T Consensus 12 G~tv~L~C~v~g~~~~~v~W~k~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~~~~~~~ 90 (95)
T cd05882 12 GGTVTLKCGVKEHDNSSLQWSNTAQQ-TLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTMPVRTAK 90 (95)
T ss_pred CCcEEEEEEEeCCCCCeEEEeccCcc-EEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEeeccccEE
Confidence 34789999999999999999996544 33334444445677776666556789999999999999999999765445555
Q ss_pred EEEE
Q psy16425 82 GYLE 85 (163)
Q Consensus 82 ~~l~ 85 (163)
+.|.
T Consensus 91 ~~~~ 94 (95)
T cd05882 91 ATVT 94 (95)
T ss_pred EEEE
Confidence 5543
No 15
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.50 E-value=3.4e-13 Score=75.73 Aligned_cols=68 Identities=18% Similarity=0.369 Sum_probs=49.6
Q ss_pred eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeE
Q psy16425 4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVG 82 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~ 82 (163)
++.+.|...+.|.|.|.|++ ++..+. ...++.....+ .|.|.+++.+|+|.|+|.+.|. +.....+
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k-~g~~~~--------~~~~~~~~~~~----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 67 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVK-NGDMVI--------PSDYFKIVKEH----NLQVLGLVKSDEGFYQCIAENDVGNVQASA 67 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEE-CCeECC--------CCCCEEEEecC----CEEEEcCCcccCEEEEEEEEcCCCEEEEEE
Confidence 57899999999999999999 444431 23344544443 5888899999999999999776 4444444
Q ss_pred EE
Q psy16425 83 YL 84 (163)
Q Consensus 83 ~l 84 (163)
.|
T Consensus 68 ~L 69 (71)
T cd05723 68 QL 69 (71)
T ss_pred EE
Confidence 44
No 16
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.48 E-value=5e-13 Score=75.66 Aligned_cols=70 Identities=21% Similarity=0.238 Sum_probs=51.3
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
..+.|.|...+.|.|.|.|++ ++..+. ...++.....+ +|.|.+++.+|+|.|+|.+.|. +.....
T Consensus 3 ~~v~l~C~~~g~P~p~i~W~k-~g~~~~--------~~~~~~~~~~~----~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 69 (74)
T cd05745 3 QTVDFLCEAQGYPQPVIAWTK-GGSQLS--------VDRRHLVLSSG----TLRISRVALHDQGQYECQAVNIVGSQRTV 69 (74)
T ss_pred CeEEEEeECCEecCCEEEEEE-CCEECC--------CCCCeEEccCC----eEEEeeCCHHhCEEEEEEEEeCCCceeEE
Confidence 478999999999999999999 554431 22333333333 8999999999999999999776 444454
Q ss_pred EEEE
Q psy16425 82 GYLE 85 (163)
Q Consensus 82 ~~l~ 85 (163)
+.|.
T Consensus 70 ~~L~ 73 (74)
T cd05745 70 AQLT 73 (74)
T ss_pred EEEe
Confidence 4444
No 17
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.47 E-value=2.3e-12 Score=76.83 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=60.2
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
..+.+.|...+.|.+.+.|+| ++..+. ...++...... ....|.|.++..+|+|.|+|.+.|. +.....
T Consensus 16 ~~v~l~C~~~G~p~p~v~W~k-dg~~l~--------~~~~~~~~~~~-~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~ 85 (98)
T cd05762 16 ESVELFCKVTGTQPITCTWMK-FRKQIQ--------EGEGIKIENTE-NSSKLTITEGQQEHCGCYTLEVENKLGSRQAQ 85 (98)
T ss_pred CEEEEEEEEcccCCCceEEEE-CCEEec--------CCCcEEEEecC-CeeEEEECCCChhhCEEEEEEEEcCCCceeEE
Confidence 468899999999999999999 666552 22344444322 2348999999999999999999877 666777
Q ss_pred EEEEEEcCCc
Q psy16425 82 GYLEVVVPPD 91 (163)
Q Consensus 82 ~~l~v~~~p~ 91 (163)
+.|.|...|.
T Consensus 86 ~~l~V~~~P~ 95 (98)
T cd05762 86 VNLTVVDKPD 95 (98)
T ss_pred EEEEEecCCC
Confidence 8888887663
No 18
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.46 E-value=2.4e-12 Score=74.80 Aligned_cols=81 Identities=21% Similarity=0.165 Sum_probs=54.8
Q ss_pred eeEEEeeeeccCCC--EEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceE
Q psy16425 4 RMLIEIGEMLMAES--TVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQ 80 (163)
Q Consensus 4 ~~~~~~~~~~~~~~--~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~ 80 (163)
.+.|.|.+.+.|.| .+.|++ ++..+.... ...++..........+|.|.+++..|+|.|+|.+.+. +....
T Consensus 2 ~~~L~C~a~g~P~p~~~v~W~~-~g~~i~~~~-----~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~ 75 (85)
T cd05854 2 NLTLQCHASHDPTMDLTFTWSL-DDFPIDLDK-----PNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASA 75 (85)
T ss_pred cEEEEEEEecCCCCCeEEEEEE-CCeEccccC-----CCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEE
Confidence 46788888888776 689999 565542211 1222221111112348999999999999999999776 56667
Q ss_pred eEEEEEEcCC
Q psy16425 81 VGYLEVVVPP 90 (163)
Q Consensus 81 ~~~l~v~~~p 90 (163)
.+.|.|..+|
T Consensus 76 ~~~L~V~~~P 85 (85)
T cd05854 76 SATLVVRGPP 85 (85)
T ss_pred EEEEEEECCC
Confidence 7888887765
No 19
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.45 E-value=1.3e-12 Score=73.81 Aligned_cols=70 Identities=26% Similarity=0.401 Sum_probs=52.1
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
.++.|.|...+.|.|.+.|++ ++..+ ....++.+...+ +|.|.+++.+|+|.|+|.+.|. +.....
T Consensus 2 ~~v~L~C~~~g~P~p~v~W~k-~~~~~--------~~~~~~~~~~~~----~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 68 (73)
T cd04969 2 GDVIIECKPKAAPKPTISWSK-GTELL--------TNSSRICIWPDG----SLEILNVTKSDEGKYTCFAENFFGKANST 68 (73)
T ss_pred CeEEEEEeeeEcCCCEEEEEE-CCEEc--------ccCCCEEECCCC----eEEEccCChhHCEEEEEEEECCCCceEEE
Confidence 578899999999999999999 55543 233455554443 7999999999999999999776 444444
Q ss_pred EEEE
Q psy16425 82 GYLE 85 (163)
Q Consensus 82 ~~l~ 85 (163)
+.|.
T Consensus 69 ~~l~ 72 (73)
T cd04969 69 GSLS 72 (73)
T ss_pred EEEE
Confidence 4443
No 20
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.45 E-value=2e-12 Score=75.95 Aligned_cols=81 Identities=22% Similarity=0.350 Sum_probs=57.2
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
..+.|.|...+.|.|.|.|++.+..... ..........|+.+...+ +|.|.+++.+|+|.|+|.+.|. +.....
T Consensus 2 ~~v~L~C~~~g~P~p~v~W~k~g~~~~~-~~~~~~~~~~r~~v~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 76 (90)
T cd05726 2 RTVTFQCEATGNPQPAIFWQKEGSQNLL-FSYQPPQSSSRFSVSQTG----DLTITNVQRSDVGYYICQTLNVAGSILTK 76 (90)
T ss_pred CEEEEEEECCccCCCEEEEEeCCCccee-ecccCCCCCCeEEECCCC----eEEEeeCChhhCEEEEEEEEcCCCceEEE
Confidence 4688999999999999999995433221 111111234566655443 7999999999999999999776 555666
Q ss_pred EEEEEEc
Q psy16425 82 GYLEVVV 88 (163)
Q Consensus 82 ~~l~v~~ 88 (163)
+.|.|..
T Consensus 77 ~~l~V~~ 83 (90)
T cd05726 77 AYLEVTD 83 (90)
T ss_pred EEEEEee
Confidence 7777764
No 21
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.44 E-value=1.4e-12 Score=75.30 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=56.3
Q ss_pred eeEEEeeee--ccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceE
Q psy16425 4 RMLIEIGEM--LMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQ 80 (163)
Q Consensus 4 ~~~~~~~~~--~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~ 80 (163)
.+.+.|... +.+++.+.|++ ++..+... ....++..........+|.|.+++.+|+|.|+|.+.+. ...+.
T Consensus 2 ~~~l~C~v~~d~~l~~~~~W~~-dg~~i~~~-----~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a 75 (85)
T cd05853 2 SIVLPCQVSHDHSLDIVFTWSF-NGHLIDFQ-----KDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSA 75 (85)
T ss_pred cEEEEEEeccCCCCCcEEEEEE-CCEECccc-----CCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEE
Confidence 356667754 46789999999 67666321 11224444322122238999999999999999999877 56677
Q ss_pred eEEEEEEcCC
Q psy16425 81 VGYLEVVVPP 90 (163)
Q Consensus 81 ~~~l~v~~~p 90 (163)
.+.|.|.++|
T Consensus 76 ~a~L~V~~pP 85 (85)
T cd05853 76 AADLIVRGPP 85 (85)
T ss_pred EEEEEEecCC
Confidence 8889998876
No 22
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.44 E-value=4.4e-12 Score=75.23 Aligned_cols=75 Identities=16% Similarity=0.269 Sum_probs=52.0
Q ss_pred ceeEEEeeeeccCC-CEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425 3 ARMLIEIGEMLMAE-STVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~-~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~ 81 (163)
..+.+.|...+.|. |.|.|++.++..+.. ...|+.+........+|.|.+++.+|+|.|+|.+.|.......
T Consensus 16 ~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~-------~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~ 88 (96)
T cd05865 16 ESKFFLCQVAGEAKDKDISWFSPNGEKLTP-------NQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESE 88 (96)
T ss_pred CeEEEEEEEeCCCCCCEEEEECCCCcCccc-------cCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEE
Confidence 46889999999985 799999855554321 1234544433333458999999999999999999886433333
Q ss_pred EEE
Q psy16425 82 GYL 84 (163)
Q Consensus 82 ~~l 84 (163)
+.+
T Consensus 89 ~s~ 91 (96)
T cd05865 89 ATV 91 (96)
T ss_pred EEE
Confidence 333
No 23
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.43 E-value=3.7e-12 Score=75.13 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=51.4
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
..+.|.|...+.|.|.|.|++ ++..+. ...++..........+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus 17 ~~v~L~C~v~G~P~p~v~W~k-~g~~l~--------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05737 17 KTLNLTCTVFGDPDPEVSWLK-NDQALA--------LSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVD 87 (92)
T ss_pred CcEEEEEEEEecCCCeEEEEE-CCEECc--------cCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEE
Confidence 367889999999999999999 555442 2234444332223458999999999999999999775 444443
Q ss_pred EEE
Q psy16425 82 GYL 84 (163)
Q Consensus 82 ~~l 84 (163)
+.+
T Consensus 88 ~~v 90 (92)
T cd05737 88 VTV 90 (92)
T ss_pred EEE
Confidence 333
No 24
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.43 E-value=1.7e-12 Score=71.67 Aligned_cols=65 Identities=17% Similarity=0.260 Sum_probs=48.4
Q ss_pred eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425 5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY 83 (163)
Q Consensus 5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~ 83 (163)
+.+.|...+.|.|.+.||| ++..+.. + .....|.|.++..+|+|.|+|.+.|. +.......
T Consensus 1 ~~l~c~v~g~P~P~v~W~k-dg~~l~~----------~-------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~ 62 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYK-DGKLISG----------K-------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRIS 62 (67)
T ss_pred CEEEEEEEEeCCCEEEEEE-CCEECcc----------c-------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEE
Confidence 3578889999999999999 6665521 0 01228999999999999999999876 54455555
Q ss_pred EEEE
Q psy16425 84 LEVV 87 (163)
Q Consensus 84 l~v~ 87 (163)
+.+.
T Consensus 63 ~~l~ 66 (67)
T cd05863 63 LELI 66 (67)
T ss_pred EEEE
Confidence 6554
No 25
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.43 E-value=1.9e-12 Score=72.61 Aligned_cols=69 Identities=16% Similarity=0.282 Sum_probs=48.7
Q ss_pred eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425 5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY 83 (163)
Q Consensus 5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~ 83 (163)
+.+.|...+.|.|.+.|+| ++..+.. ..++... ..+|.|.+++.+|+|.|+|.+.|. +.......
T Consensus 1 ~~l~c~v~g~P~p~v~W~k-~g~~l~~--------~~~~~~~-----~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~ 66 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYK-NGKLISE--------KNRTKKS-----GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLT 66 (71)
T ss_pred CEEEeEEEEeCCCEEEEEE-CCEECCC--------CCEEEcC-----CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEE
Confidence 4578889999999999999 6655421 1222211 128999999999999999999776 34445555
Q ss_pred EEEE
Q psy16425 84 LEVV 87 (163)
Q Consensus 84 l~v~ 87 (163)
+.+.
T Consensus 67 ~~~~ 70 (71)
T cd04976 67 FTLV 70 (71)
T ss_pred EEEE
Confidence 5543
No 26
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.43 E-value=3.5e-12 Score=80.96 Aligned_cols=76 Identities=28% Similarity=0.402 Sum_probs=59.6
Q ss_pred EEEEcccCCCCCeEEEEEEEeC-CCceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-CC-CeEEEEECCe
Q psy16425 54 YLHIREVRESDRGWYMCQVNTD-PMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-PK-PNITWRREGG 130 (163)
Q Consensus 54 ~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~v~W~~~~~ 130 (163)
+|.|.+++.+|+|.|.|.+.+. +.......|.+..+|.+...+. .....+|+.+.|.|.+.|. |+ +.+.|++++.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~--~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~ 79 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLE--KLVSMIEEPQTLICHIAGYYPLDVQVEWTREPP 79 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCC--CceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence 7999999999999999999654 4556667888888887765443 2233478899999999985 54 4899999975
Q ss_pred E
Q psy16425 131 E 131 (163)
Q Consensus 131 ~ 131 (163)
.
T Consensus 80 ~ 80 (139)
T cd05771 80 G 80 (139)
T ss_pred C
Confidence 4
No 27
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.42 E-value=6.8e-12 Score=73.35 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=57.7
Q ss_pred eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeC--C-CceEEEEEcccCCCCCeEEEEEEEeC-CCce
Q psy16425 4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHS--E-TKAWYLHIREVRESDRGWYMCQVNTD-PMKS 79 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~--~-~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~ 79 (163)
.+.|.|...+.|++.+.|++ ++..+.. ...|+.+... + ....+|.|.++..+|+|.|+|.+.|. +...
T Consensus 3 ~~~l~C~~~g~p~~~i~W~k-~~~~i~~-------~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~ 74 (88)
T cd05735 3 KKEMSCTAHGEKPIIVRWEK-EDRIINP-------EMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDR 74 (88)
T ss_pred eEEEEEEEECCCCCEEEEee-CCEECCC-------CCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcce
Confidence 57888999999999999999 5544311 1234443321 1 12357999999999999999999777 6667
Q ss_pred EeEEEEEEcCCc
Q psy16425 80 QVGYLEVVVPPD 91 (163)
Q Consensus 80 ~~~~l~v~~~p~ 91 (163)
..+.|.|..+|.
T Consensus 75 ~~~~L~V~~~P~ 86 (88)
T cd05735 75 GIIQLTVQEPPD 86 (88)
T ss_pred EEEEEEEeCCCC
Confidence 777888887653
No 28
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.42 E-value=1.8e-12 Score=72.40 Aligned_cols=66 Identities=24% Similarity=0.391 Sum_probs=48.1
Q ss_pred eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425 5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY 83 (163)
Q Consensus 5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~ 83 (163)
+.|.|...+.|.|.|.|++ ++..+ ....++.+...+ .|.|.+++.+|+|.|+|.+.|. +..+..+.
T Consensus 1 v~L~C~~~g~P~p~i~W~k-~g~~~--------~~~~~~~~~~~~----~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 67 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNK-DGVQV--------TESGKFHISPEG----YLAIRDVGVADQGRYECVARNTIGYASVSMV 67 (69)
T ss_pred CEeEecceEeCCCEEEEEE-CCEEC--------CCCCCEEECCCC----EEEECcCChhhCEEEEEEEECCCCcEEEEEE
Confidence 4678899999999999999 55443 223444444333 8999999999999999999776 44444333
No 29
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.40 E-value=1.1e-11 Score=72.18 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=52.3
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
..+.|.|...+.|.|.|.|++ ++..+.. ...|+...... ....|.|.++..+|+|.|+|.+.|. +.....
T Consensus 11 ~~v~l~c~~~G~P~P~v~W~k-~~~~i~~-------~~~r~~~~~~~-~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~ 81 (86)
T cd05894 11 NKLRLDVPISGEPAPTVTWSR-GDKAFTE-------TEGRVRVESYK-DLSSFVIEGAEREDEGVYTITVTNPVGEDHAS 81 (86)
T ss_pred CEEEEEeeEeecCCCeEEEEE-CCEECcc-------CCCeEEEEEcC-CeEEEEECCCccCcCEEEEEEEEeCCCcEEEE
Confidence 368899999999999999999 5555421 12355544332 2458999999999999999999776 443443
Q ss_pred EEE
Q psy16425 82 GYL 84 (163)
Q Consensus 82 ~~l 84 (163)
+.|
T Consensus 82 ~~l 84 (86)
T cd05894 82 LFV 84 (86)
T ss_pred EEE
Confidence 333
No 30
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.40 E-value=8.7e-12 Score=70.53 Aligned_cols=70 Identities=20% Similarity=0.274 Sum_probs=49.9
Q ss_pred eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425 5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY 83 (163)
Q Consensus 5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~ 83 (163)
+.|.|...+.|.|.+.|++ ++..+ ....++.+.... ....|.|.++..+|+|.|+|.+.|. +.....+.
T Consensus 2 ~~l~c~~~G~P~p~v~W~k-~g~~l--------~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 71 (74)
T cd05748 2 VRLEVPISGRPTPTVTWSK-DGKPL--------KLSGRVQIETTA-SSTSLVIKNAERSDSGKYTLTLKNPAGEKSATIN 71 (74)
T ss_pred EEEEeeEeeeCCCeEEEEE-CCEEc--------CCCCeEEEEECC-CeEEEEECCCCcCcCEEEEEEEECCCccEEEEEE
Confidence 5788999999999999999 55544 123344443322 3458999999999999999999776 44344333
Q ss_pred E
Q psy16425 84 L 84 (163)
Q Consensus 84 l 84 (163)
|
T Consensus 72 l 72 (74)
T cd05748 72 V 72 (74)
T ss_pred E
Confidence 3
No 31
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.40 E-value=9.3e-12 Score=72.33 Aligned_cols=81 Identities=19% Similarity=0.142 Sum_probs=53.8
Q ss_pred eeEEEeeeeccCCC--EEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceE
Q psy16425 4 RMLIEIGEMLMAES--TVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQ 80 (163)
Q Consensus 4 ~~~~~~~~~~~~~~--~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~ 80 (163)
.+.|.|...+.|.+ .+.|++ ++..+.... ...++..........+|.|.+++..|+|.|+|.+.|. +....
T Consensus 2 ~~~L~C~~~g~P~p~i~~~W~~-~g~~i~~~~-----~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~ 75 (85)
T cd04970 2 SITLQCHASHDPTLDLTFTWSF-NGVPIDFDK-----DGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSA 75 (85)
T ss_pred cEEEEEEEecCCCCCeEEEEEE-CCeEeeccC-----CCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEE
Confidence 46788888888877 668999 666553211 0111111111112338999999999999999999776 55667
Q ss_pred eEEEEEEcCC
Q psy16425 81 VGYLEVVVPP 90 (163)
Q Consensus 81 ~~~l~v~~~p 90 (163)
.+.|.|..+|
T Consensus 76 ~~~l~V~~pP 85 (85)
T cd04970 76 SADLIVRGPP 85 (85)
T ss_pred EEEEEEECCC
Confidence 7788888765
No 32
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.40 E-value=4.6e-12 Score=71.07 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=47.1
Q ss_pred eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425 5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY 83 (163)
Q Consensus 5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~ 83 (163)
+.|.|...+.|.|.|.|++.+ ..+.. .+..... ...+|.|.+++.+|+|.|+|.+.|. +.....+.
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~-~~~~~---------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 67 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRID-GPLSP---------NRTKKLN---NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYT 67 (71)
T ss_pred CEEEEEeeEecCCeEEEEECC-cCCCC---------CceeEEc---CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEE
Confidence 468899999999999999954 33311 1111111 1238999999999999999999776 44444444
Q ss_pred EEE
Q psy16425 84 LEV 86 (163)
Q Consensus 84 l~v 86 (163)
|.|
T Consensus 68 l~V 70 (71)
T cd05876 68 VTV 70 (71)
T ss_pred EEE
Confidence 443
No 33
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.39 E-value=6.5e-12 Score=75.17 Aligned_cols=76 Identities=18% Similarity=0.133 Sum_probs=53.2
Q ss_pred ceeEEEeeeec-cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeC----CCceEEEEEcccCCCCCeEEEEEEEeC-C
Q psy16425 3 ARMLIEIGEML-MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHS----ETKAWYLHIREVRESDRGWYMCQVNTD-P 76 (163)
Q Consensus 3 ~~~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~ 76 (163)
.++.|.|...+ .|+|.|.|+| ++.++... ........ ......|.|..+..+|+|.|+|.+.|. +
T Consensus 19 ~~v~L~c~v~g~~P~p~v~W~K-dg~~i~~~--------~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 19 ENLNLVVEVEAYPPPPHINWTY-DNRTLTNK--------LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred CCEEEEEEEEecCCCCccEEEe-CCeeCCCC--------cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 46889999999 9999999999 66665321 11111111 011248999999999999999999876 5
Q ss_pred CceEeEEEEEE
Q psy16425 77 MKSQVGYLEVV 87 (163)
Q Consensus 77 ~~~~~~~l~v~ 87 (163)
..+..+.|.|.
T Consensus 90 ~~~~t~~L~V~ 100 (101)
T cd04975 90 SKSLTFELYVN 100 (101)
T ss_pred cEEEEEEEEEE
Confidence 55566666665
No 34
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.39 E-value=7.2e-12 Score=71.26 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=51.1
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
..+.|.|...+.|.|.|.|++ ++..+.... ...++... .+ +|.|.+++.+|+|.|.|.+.|. +.....
T Consensus 2 ~~v~l~C~~~G~P~p~i~W~k-~g~~i~~~~-----~~~~~~~~-~~----~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 70 (76)
T cd05867 2 ETARLDCQVEGIPTPNITWSI-NGAPIEGTD-----PDPRRHVS-SG----ALILTDVQPSDTAVYQCEARNRHGNLLAN 70 (76)
T ss_pred CeEEEEEEeeEeCCCeEEEEE-CCEECCCCC-----CCceEEee-CC----EEEECCCChhhCEEEEEEEECCCCeEEEE
Confidence 468899999999999999999 555442110 11233322 22 7999999999999999999775 444455
Q ss_pred EEEEE
Q psy16425 82 GYLEV 86 (163)
Q Consensus 82 ~~l~v 86 (163)
+.|.|
T Consensus 71 ~~l~V 75 (76)
T cd05867 71 AHVHV 75 (76)
T ss_pred EEEEE
Confidence 55544
No 35
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.39 E-value=4.9e-12 Score=70.56 Aligned_cols=67 Identities=21% Similarity=0.274 Sum_probs=47.9
Q ss_pred eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425 5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY 83 (163)
Q Consensus 5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~ 83 (163)
+.|.|...+.|.|.+.|++.++ .+ ...++...... +|.|.+++.+|+|.|+|.+.|. +.....+.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~-~~---------~~~~~~~~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 66 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDG-EL---------PKGRAEILDDK----SLKIRNVTAGDEGSYTCEAENMVGKIEASAS 66 (69)
T ss_pred CEEEEECccCCCCEEEEEECCc-cC---------CCCcEEEeeCC----EEEECcCChhHCEEEEEEEEcCCCcEEEEEE
Confidence 4678889999999999999533 22 12344444333 8999999999999999999776 44444444
Q ss_pred EE
Q psy16425 84 LE 85 (163)
Q Consensus 84 l~ 85 (163)
|.
T Consensus 67 l~ 68 (69)
T cd05725 67 LT 68 (69)
T ss_pred EE
Confidence 43
No 36
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.39 E-value=4.5e-12 Score=75.91 Aligned_cols=81 Identities=19% Similarity=0.305 Sum_probs=53.2
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
..+.+.|...+.|.|.+.|+| ++.++.............. .......+|.|.+++.+|+|.|+|.+.|. +..+..
T Consensus 19 ~~~~l~~~v~g~P~P~v~W~k-dg~~l~~~~~~~~~~~~~~---~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t 94 (101)
T cd05859 19 EVKEFVVEVEAYPPPQIRWLK-DNRTLIENLTEITTSEHNV---QETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYT 94 (101)
T ss_pred CcEEEEEEEEEeCCCceEEEE-CCEECcCCcceEEeccccc---cceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEE
Confidence 457889999999999999999 6666532211111100000 00011238999999999999999999776 455556
Q ss_pred EEEEEE
Q psy16425 82 GYLEVV 87 (163)
Q Consensus 82 ~~l~v~ 87 (163)
+.|.|.
T Consensus 95 ~~l~V~ 100 (101)
T cd05859 95 FALQIQ 100 (101)
T ss_pred EEEEEE
Confidence 666664
No 37
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.38 E-value=6.8e-12 Score=73.36 Aligned_cols=70 Identities=14% Similarity=0.256 Sum_probs=50.4
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
.++.|.|...+.|.|.|.|++. +..+. ...++... +..|.|.+++.+|+|.|+|.+.|. +.....
T Consensus 17 ~~v~l~C~~~G~P~P~v~W~k~-~~~~~--------~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 82 (88)
T cd05851 17 QNVTLECFALGNPVPVIRWRKI-LEPMP--------ATAEISMS-----GAVLKIFNIQPEDEGTYECEAENIKGKDKHQ 82 (88)
T ss_pred CcEEEEEEecccCCCEEEEEEC-CcCCC--------CCCEEecC-----CCEEEECcCChhhCEEEEEEEEcCCCceEEE
Confidence 4789999999999999999994 43331 11222221 127999999999999999999776 555555
Q ss_pred EEEEE
Q psy16425 82 GYLEV 86 (163)
Q Consensus 82 ~~l~v 86 (163)
+.|.|
T Consensus 83 ~~l~V 87 (88)
T cd05851 83 ARVYV 87 (88)
T ss_pred EEEEE
Confidence 55554
No 38
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.38 E-value=1.4e-11 Score=73.06 Aligned_cols=83 Identities=22% Similarity=0.358 Sum_probs=59.0
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG 82 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 82 (163)
.++.|.|...+.|.+.|.|++.++..+. ........++|+.........++|.|.+++.+|+|.|.|.+.+.......+
T Consensus 13 ~~v~L~C~~~~~p~~~v~W~~~~~~~l~-~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~~~~~ 91 (95)
T cd07701 13 GTANLTCRVDQNDNTSLQWSNPAQQTLY-FDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPVKTSKA 91 (95)
T ss_pred CcEEEEEEEecCCceEEEEeCCCCeEEE-EcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecCccEEE
Confidence 4688999999999999999985543332 222222345677765544456799999999999999999997655555555
Q ss_pred EEEE
Q psy16425 83 YLEV 86 (163)
Q Consensus 83 ~l~v 86 (163)
.|.|
T Consensus 92 ~l~v 95 (95)
T cd07701 92 YLTV 95 (95)
T ss_pred EEEC
Confidence 5543
No 39
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.38 E-value=8.5e-12 Score=70.57 Aligned_cols=71 Identities=27% Similarity=0.333 Sum_probs=49.8
Q ss_pred eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc--eEeE
Q psy16425 5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK--SQVG 82 (163)
Q Consensus 5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~--~~~~ 82 (163)
+.|.|...+.|.|.|.|++ ++..+.. ....++.....+ +|.|.+++.+|+|.|+|.+.|.... +..+
T Consensus 1 a~l~C~~~G~P~p~v~W~k-~~~~~~~------~~~~~~~~~~~g----~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a 69 (74)
T cd05738 1 ATMLCAASGNPDPEITWFK-DFLPVDT------TSNGRIKQLRSG----ALQIENSEESDQGKYECVATNSAGTRYSAPA 69 (74)
T ss_pred CEEEEEEeEecCCEEEEEE-CCEECcc------CCCCCEEEcCCc----EEEECCCChhhCEEEEEEEECCCCceEcccE
Confidence 3678899999999999999 4544311 123455554433 7999999999999999999876433 3444
Q ss_pred EEEE
Q psy16425 83 YLEV 86 (163)
Q Consensus 83 ~l~v 86 (163)
.|.|
T Consensus 70 ~l~v 73 (74)
T cd05738 70 NLYV 73 (74)
T ss_pred EEEE
Confidence 4443
No 40
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.37 E-value=6e-12 Score=70.26 Aligned_cols=67 Identities=25% Similarity=0.338 Sum_probs=47.9
Q ss_pred EEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEEE
Q psy16425 6 LIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGYL 84 (163)
Q Consensus 6 ~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~l 84 (163)
.+.|...+.|.|.+.||| ++..+.. ..++ .. ...|.|.++..+|+|.|+|.+.|. +.......+
T Consensus 2 ~~~c~v~G~P~P~v~W~k-~g~~l~~--------~~~~--~~----~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~ 66 (70)
T cd05864 2 KIPVKYYGYPPPEVKWYK-NGQLIVL--------NHTF--KR----GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTF 66 (70)
T ss_pred EEEeEEEEeCCCEEEEEE-CCEECCC--------CCEE--cc----CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEE
Confidence 578889999999999999 6665521 1111 11 127999999999999999999777 444444555
Q ss_pred EEE
Q psy16425 85 EVV 87 (163)
Q Consensus 85 ~v~ 87 (163)
.+.
T Consensus 67 ~l~ 69 (70)
T cd05864 67 QLV 69 (70)
T ss_pred EEE
Confidence 443
No 41
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.37 E-value=1.1e-11 Score=70.60 Aligned_cols=66 Identities=12% Similarity=0.169 Sum_probs=45.5
Q ss_pred EEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeE----EEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 7 IEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRI----GVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 7 ~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
+.|...+.|.|.|+||| ++..+.. ..+. .........+.|.|.++..+|+|.|+|.|.|. |.....
T Consensus 3 i~~~v~G~P~Pti~W~k-ng~~l~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~ 73 (79)
T cd05855 3 IPFTVKGNPKPTLQWFH-EGAILNE--------SEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKN 73 (79)
T ss_pred EEEEEeEeCCCceEEEE-CCEECCC--------CcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceE
Confidence 56788899999999999 6665521 1111 11111223458999999999999999999876 433333
No 42
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.37 E-value=8.8e-12 Score=70.69 Aligned_cols=72 Identities=19% Similarity=0.280 Sum_probs=48.9
Q ss_pred EEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEEE
Q psy16425 6 LIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGYL 84 (163)
Q Consensus 6 ~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~l 84 (163)
.|.|...+.|.|.|.|++.+..... . ....++...... ..|.|.+++.+|+|.|.|.+.|. +.....+.|
T Consensus 2 ~l~C~~~G~P~P~v~W~k~~~~~~~-~-----~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l 72 (75)
T cd05763 2 RLECAATGHPTPQIAWQKDGGTDFP-A-----ARERRMHVMPED---DVFFIVDVKIEDTGVYSCTAQNTAGSISANATL 72 (75)
T ss_pred EeEeecccccCCEEEEEeCCCccCC-c-----ccccceEEecCC---CEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEE
Confidence 5778889999999999995432111 0 122344433221 27999999999999999999776 444555555
Q ss_pred EE
Q psy16425 85 EV 86 (163)
Q Consensus 85 ~v 86 (163)
.|
T Consensus 73 ~V 74 (75)
T cd05763 73 TV 74 (75)
T ss_pred EE
Confidence 54
No 43
>KOG4222|consensus
Probab=99.37 E-value=2.3e-12 Score=101.51 Aligned_cols=138 Identities=22% Similarity=0.347 Sum_probs=105.7
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
+++.+.|...+.|.|.|.|.+.+. .+ ...|+.+..+. .+|.|..+++.|+|.|.|.+.+. +.....
T Consensus 241 ~~~~f~c~v~GdP~P~Vrwkk~~~-~~---------P~~ry~i~~d~---qtl~i~r~tp~deg~y~C~a~n~vG~l~as 307 (1281)
T KOG4222|consen 241 AAAEFDCRVGGDPQPTVRWKKDDP-SL---------PRSRYSILDDT---QTLRIDRVTPTDEGTYVCPAENLVGGLEAS 307 (1281)
T ss_pred cccccccccCCCCCCceeeeccCC-CC---------Cccceeeeecc---ccccccccCCCcccceeeeccccccccccc
Confidence 457788999999999999999433 22 23556665541 28999999999999999999766 677788
Q ss_pred EEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecC-Cce--------EEeceEEEEcchh
Q psy16425 82 GYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQG-NGQ--------EDFPFFKRTKKKK 152 (163)
Q Consensus 82 ~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~-~~~--------~~~~~l~i~~v~~ 152 (163)
+.++|+.+|.+...+. ...+..|..++|.|.+.|+|.|.+.|.+.+..-.... ... ...+.|+|++|.+
T Consensus 308 a~ltV~apP~f~kkp~--dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~ 385 (1281)
T KOG4222|consen 308 ATLTVQAPPSFGKKPR--DQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQ 385 (1281)
T ss_pred cceEEecCcccccccC--ccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccc
Confidence 8999999998887664 4556779999999999999999999999876532221 111 1335889999888
Q ss_pred hhH
Q psy16425 153 KKK 155 (163)
Q Consensus 153 ~~~ 155 (163)
.|-
T Consensus 386 ~d~ 388 (1281)
T KOG4222|consen 386 SDE 388 (1281)
T ss_pred ccc
Confidence 763
No 44
>KOG4222|consensus
Probab=99.36 E-value=3.1e-12 Score=100.86 Aligned_cols=135 Identities=23% Similarity=0.407 Sum_probs=98.3
Q ss_pred eeEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC--CceE
Q psy16425 4 RMLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP--MKSQ 80 (163)
Q Consensus 4 ~~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~--~~~~ 80 (163)
+++++|.. -+.|.+.|.|.| ++.++.. ....++.+...+ .|.|.++...|+|.|.|.++|.. ..+.
T Consensus 148 ~avlEcgpP~ghpeptvSw~K-dg~pl~~------~~~~~~~lisgG----~LlIsnvrksD~GtY~CVatNmvG~ReS~ 216 (1281)
T KOG4222|consen 148 EAVLECGPPRGHPEPTVSWVK-DGKPLDH------YDVPIIALISGG----NLLISNVRKSDEGTYACVATNMVGERESI 216 (1281)
T ss_pred eeEEeccCCCCCCCCcceeec-CCCcccc------ccceeEEEecCC----cEEEeccccCCCceeeeeecccccccccc
Confidence 56777774 456779999999 6665531 122344444444 89999999999999999997763 3456
Q ss_pred eEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce-EEeceEEEEcch
Q psy16425 81 VGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ-EDFPFFKRTKKK 151 (163)
Q Consensus 81 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-~~~~~l~i~~v~ 151 (163)
.+.|.|+..|.+...+ ..+.+..|..+.++|.+.|.|.|.+.|.+++..+....... .....+.|.+++
T Consensus 217 ~A~lsv~e~P~f~~rp--~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~t 286 (1281)
T KOG4222|consen 217 PARLSVQEKPWFWKRP--KDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVT 286 (1281)
T ss_pred cceeeeccCCcccccc--ccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccC
Confidence 6789999999887755 36778889999999999999999999999876654332222 233556666555
No 45
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.36 E-value=1.4e-11 Score=71.50 Aligned_cols=74 Identities=19% Similarity=0.296 Sum_probs=49.7
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
..+.|.|...+.|.|.|.|++ ++..+..... ..++... ...++|.|.++..+|+|.|+|.+.|. +.....
T Consensus 10 ~~~~L~C~~~g~P~p~i~W~k-~g~~l~~~~~-----~~~~~~~---~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 80 (85)
T cd05857 10 NTVKFRCPAAGNPTPTMRWLK-NGKEFKQEHR-----IGGYKVR---NQHWSLIMESVVPSDKGNYTCVVENEYGSINHT 80 (85)
T ss_pred CEEEEEEEcCCCCCCEEEEEE-CCEECCCCCc-----eeeeEEe---CCceEEEEccCCcccCEEEEEEEEeCCCEEEEE
Confidence 468899999999999999999 5554421100 0111111 12457999999999999999999776 444444
Q ss_pred EEEE
Q psy16425 82 GYLE 85 (163)
Q Consensus 82 ~~l~ 85 (163)
+.|.
T Consensus 81 ~~l~ 84 (85)
T cd05857 81 YHLD 84 (85)
T ss_pred EEEE
Confidence 4443
No 46
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.36 E-value=1.2e-11 Score=70.45 Aligned_cols=60 Identities=18% Similarity=0.312 Sum_probs=43.8
Q ss_pred eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
+.|.|...+.|.|.|.|+| ++..+.. ...++.+... ...|.|.+++++|+|.|.|.+.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k-~g~~l~~-------~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~ 60 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFR-DGTPLSD-------GQGNYSVSSK---ERTLTLRSAGPDDSGLYYCCAHNA 60 (77)
T ss_pred CEEEEEeeecCCCcEEEEE-CCEECCC-------CCccEEEeCC---CCEEEEeeCCcccCEEEEEEEEeC
Confidence 4688899999999999999 5554321 1123333221 227999999999999999999876
No 47
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.36 E-value=1.8e-11 Score=69.16 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=49.6
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
.++.|.|...+.|.|.+.|++.++..+. ...+......+ +|.|.++..+|+|.|+|.+.|. +.....
T Consensus 2 ~~~~l~C~~~g~P~p~v~W~~~~~~~~~--------~~~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 69 (74)
T cd05764 2 QRATLRCKARGDPEPAIHWISPDGKLIS--------NSSRTLVYDNG----TLDILITTVKDTGSFTCIASNAAGEATAT 69 (74)
T ss_pred CeEEEEEEccCcCCCEEEEEeCCCEEec--------CCCeEEEecCC----EEEEEECChhhCEEEEEEEECCCCeEEEE
Confidence 4678899999999999999985554431 22333333333 7999999999999999999776 333333
Q ss_pred EEE
Q psy16425 82 GYL 84 (163)
Q Consensus 82 ~~l 84 (163)
+.|
T Consensus 70 ~~l 72 (74)
T cd05764 70 VEL 72 (74)
T ss_pred EEE
Confidence 333
No 48
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.35 E-value=5.6e-12 Score=74.05 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=50.7
Q ss_pred ceeEEEeeeeccCCCEEEEEEcC---CceEEeeeeeEEecCCeEEEEeC------CCceEEEEEcccCCCCCeEEEEEEE
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVD---TQTILTIQTHVITKNHRIGVTHS------ETKAWYLHIREVRESDRGWYMCQVN 73 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~---~~~~~~~~~~~~~~~~r~~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~~~ 73 (163)
.++.+.|...+.|.|.|+|+|.+ +..+.. ........... ......|.|.+++.+|+|.|+|.+.
T Consensus 2 ~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 75 (90)
T cd04974 2 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGP------DGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAG 75 (90)
T ss_pred CcEEEEEEEeCCCCCeEEEEEecccCCceeCC------CCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEee
Confidence 46889999999999999999942 111110 00011111110 0112379999999999999999997
Q ss_pred eC-CCceEeEEEEE
Q psy16425 74 TD-PMKSQVGYLEV 86 (163)
Q Consensus 74 ~~-~~~~~~~~l~v 86 (163)
|. +.....+.|.|
T Consensus 76 N~~G~~~~sa~L~V 89 (90)
T cd04974 76 NSIGPSHHSAWLTV 89 (90)
T ss_pred cccCcccCCEEEEe
Confidence 76 55556666665
No 49
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.35 E-value=2.4e-11 Score=69.46 Aligned_cols=63 Identities=21% Similarity=0.338 Sum_probs=47.3
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
..+.|.|...+.|.|.|.|++ ++..+ ....++...... +...|.|.+++.+|+|.|+|.+.|.
T Consensus 2 ~~v~l~C~~~g~P~p~v~W~~-~~~~~--------~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~ 64 (78)
T cd05743 2 ETVEFTCVATGVPTPIINWRL-NWGHV--------PDSARVSITSEG-GYGTLTIRDVKESDQGAYTCEAINT 64 (78)
T ss_pred CEEEEEEEEEEecCCEEEEEE-CCeEC--------CCCCCEEEEECC-CEEEEEECCCChHHCEEEEEEEEec
Confidence 468899999999999999999 44332 122344443322 3458999999999999999999776
No 50
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.35 E-value=1.9e-11 Score=70.04 Aligned_cols=66 Identities=24% Similarity=0.409 Sum_probs=46.2
Q ss_pred eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
+.|.|...+.|.|.|.|++.++.... .........+|+.....+ +|.|.++..+|+|.|.|.+.|.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~-~~~~~~~~~~r~~~~~~~----~L~I~~v~~~D~G~Y~C~a~N~ 66 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHP-QHTHTCCLAGRIQLLSNG----SLLIKHVLEEDSGYYLCKVSND 66 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCcccc-ccccccccCCCEEEecCC----eEEECcCCcccCEEEEEEEEeC
Confidence 46889999999999999995432210 000011134555554443 8999999999999999999876
No 51
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.34 E-value=2.4e-11 Score=69.86 Aligned_cols=70 Identities=11% Similarity=0.095 Sum_probs=45.8
Q ss_pred EEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEe----CCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 7 IEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTH----SETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 7 ~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
+.|...+.|.|.|+||| ++..+..... ....... .......|.|.+++.+|+|.|+|.+.|. +.....
T Consensus 3 i~~~v~G~P~P~v~W~k-~g~~i~~~~~------~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~ 75 (81)
T cd04971 3 IPFTVRGNPKPTLTWYH-NGAVLNESDY------IRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKS 75 (81)
T ss_pred EEEEeEeeCCCcEEEEE-CCEECcCCCc------eeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeE
Confidence 56778899999999999 6665532110 0011111 1123457999999999999999999876 433443
Q ss_pred EE
Q psy16425 82 GY 83 (163)
Q Consensus 82 ~~ 83 (163)
..
T Consensus 76 ~~ 77 (81)
T cd04971 76 IS 77 (81)
T ss_pred EE
Confidence 33
No 52
>PHA03376 BARF1; Provisional
Probab=99.34 E-value=8.5e-11 Score=76.02 Aligned_cols=125 Identities=18% Similarity=0.298 Sum_probs=74.9
Q ss_pred ceeEEEeeee---ccCCCEEEEEEc----CCceEEee----eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEE
Q psy16425 3 ARMLIEIGEM---LMAESTVAWLRV----DTQTILTI----QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQ 71 (163)
Q Consensus 3 ~~~~~~~~~~---~~~~~~i~W~k~----~~~~~~~~----~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 71 (163)
.+++|.|.-. ......|.|+|. ....+... ....+...+++.+..+. ++.+|.|.+++++|.|.|+|.
T Consensus 27 Eda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~-gnvsLvI~~l~lSDdGtY~C~ 105 (221)
T PHA03376 27 ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA-NTFFLVVTAANISHDGNYLCR 105 (221)
T ss_pred CcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC-CeEEEEEEeeeecCCceEEEE
Confidence 4678888754 335678999993 22222211 12233556666665555 788999999999999999999
Q ss_pred EEeCCCce-EeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCe
Q psy16425 72 VNTDPMKS-QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGG 130 (163)
Q Consensus 72 ~~~~~~~~-~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~ 130 (163)
++...... ..-.|.+..+..+..... ......-+..++.|.+-|+|.|.++|..+.+
T Consensus 106 fQkge~~~~k~ehLt~V~~~~Lsv~a~--~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 106 MKLGETEVTKQEHLSVVKPLTLSVHSE--RSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred EEcCCCceeeeeeeeeeecceEEEEec--cccCCCCCeeEEEEecCCcCCchheeccccC
Confidence 96543222 112222222111111000 0001113557899998889999999998754
No 53
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.33 E-value=5.1e-11 Score=70.23 Aligned_cols=64 Identities=16% Similarity=0.311 Sum_probs=47.4
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
..+.+.|...+.|. .|.|++.++..+.. ..++.....+....+|.|.+++.+|+|.|+|.+.|.
T Consensus 16 ~~~~l~C~~~G~p~-~i~W~~~~~~~~~~--------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 79 (92)
T cd04977 16 ESKFFLCQVIGEPK-DISWFSPNGEKLVT--------QQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDA 79 (92)
T ss_pred CeEEEEEEeEeeCC-eEEEECCCCCEecc--------CCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcC
Confidence 46888999888874 99999855554421 233444444445568999999999999999999876
No 54
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.33 E-value=2.3e-11 Score=69.18 Aligned_cols=73 Identities=11% Similarity=0.156 Sum_probs=50.8
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
.++.+.|.+.+.|.|.|.|++ ++..+.... ......... ..|.|.+++.+|+|.|.|.+.|. +.....
T Consensus 2 ~~~~l~C~a~G~P~P~i~W~k-~g~~i~~~~------~~~~~~~~~----~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~ 70 (76)
T cd05868 2 EDGTLICRANGNPKPSISWLT-NGVPIEIAP------TDPSRKVDG----DTIIFSKVQERSSAVYQCNASNEYGYLLAN 70 (76)
T ss_pred CCEEEEEEeeEeCCCeEEEEE-CCEEccccC------CCceEEecC----CEEEECCCCHhhCEEEEEEEEcCCCEEEEE
Confidence 367899999999999999999 665542111 111111111 17899999999999999999776 555555
Q ss_pred EEEEE
Q psy16425 82 GYLEV 86 (163)
Q Consensus 82 ~~l~v 86 (163)
+.|.|
T Consensus 71 ~~l~v 75 (76)
T cd05868 71 AFVNV 75 (76)
T ss_pred EEEEe
Confidence 66654
No 55
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.32 E-value=4e-11 Score=71.53 Aligned_cols=80 Identities=20% Similarity=0.285 Sum_probs=53.6
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
.++.|.|...+.|.|.|.|++.+........ .....+|+.+... .+..+|.|.+++.+|+|.|+|.+.|. |.....
T Consensus 17 ~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~--~~~~~~r~~v~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 93 (98)
T cd05870 17 GAATLSCKAEGEPIPEITWKRASDGHTFSEG--DKSPDGRIEVKGQ-HGESSLHIKDVKLSDSGRYDCEAASRIGGHQKS 93 (98)
T ss_pred CcEEEEEecccCCCCeEEEEECCCCceeccC--CcCcCceEEEeec-CCeeEEEEeeCCcCCCEEEEEEEeccCCcceeE
Confidence 4688999999999999999995322211100 0112346655432 23458999999999999999999776 544454
Q ss_pred EEEE
Q psy16425 82 GYLE 85 (163)
Q Consensus 82 ~~l~ 85 (163)
+.|.
T Consensus 94 ~~l~ 97 (98)
T cd05870 94 MYLD 97 (98)
T ss_pred EEEe
Confidence 4444
No 56
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.31 E-value=2.5e-11 Score=71.25 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=51.0
Q ss_pred ceeEEEeeeeccCCCEEEEEEcC---CceEEeeeee--EEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-C
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVD---TQTILTIQTH--VITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-P 76 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~---~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~ 76 (163)
.++.|.|...+.|.|.|.|++.+ +..+...+.. .......+... ......|.|.+++.+|+|.|+|.+.|. +
T Consensus 2 ~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 2 STVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTT--DKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceec--CCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 46889999999999999999842 2211100000 00000001110 011247999999999999999999776 5
Q ss_pred CceEeEEEEE
Q psy16425 77 MKSQVGYLEV 86 (163)
Q Consensus 77 ~~~~~~~l~v 86 (163)
.....+.|.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 5566666665
No 57
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.31 E-value=3.2e-11 Score=70.06 Aligned_cols=68 Identities=22% Similarity=0.316 Sum_probs=49.9
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
.++.+.|...+.|.|.+.|++ ++..+ ....++.... + .|.|.+++.+|+|.|+|.+.|. +.....
T Consensus 15 ~~~~l~C~~~g~p~p~v~W~k-~g~~~--------~~~~~~~~~~-~----~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 80 (85)
T cd05728 15 SSLRWECKASGNPRPAYRWLK-NGQPL--------ASENRIEVEA-G----DLRITKLSLSDSGMYQCVAENKHGTIYAS 80 (85)
T ss_pred CcEEEEEEeeEeCCCEEEEEE-CCEEC--------CCCCeEEEeC-C----EEEEeeCCHHHCEEEEEEEECCCCeEEEE
Confidence 468899999999999999999 55543 2233444432 2 7999999999999999999776 333344
Q ss_pred EEE
Q psy16425 82 GYL 84 (163)
Q Consensus 82 ~~l 84 (163)
+.|
T Consensus 81 ~~l 83 (85)
T cd05728 81 AEL 83 (85)
T ss_pred EEE
Confidence 444
No 58
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.30 E-value=8.3e-11 Score=68.92 Aligned_cols=63 Identities=19% Similarity=0.353 Sum_probs=50.0
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
..+.+.|...+.|.+.+.|++ ++..+. ...++...... ...+|.|.+++.+|+|.|+|.+.+.
T Consensus 16 ~~~~l~c~~~~~p~~~v~W~~-~~~~l~--------~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 16 ESVTLECEVSGNPPPTVTWYK-NGRPLT--------SSQRYQIESDG-GSSSLTIKNVTREDAGTYTCVASNS 78 (90)
T ss_dssp SEEEEEEEEEESSSSEEEEEE-TTEEEE--------SSSSEEEEEET-TEEEEEESSESGGGSEEEEEEEEET
T ss_pred CEEEEEEEEEeCCCCcccccc-ccccee--------eeeeeeeeccc-ceeEEccCCCChhhCEEEEEEEEEC
Confidence 468889999999999999999 566553 24455544443 5669999999999999999999776
No 59
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.30 E-value=1.3e-10 Score=68.55 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=63.4
Q ss_pred cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425 2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQV 81 (163)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~ 81 (163)
+..+.|.|.........+.|++.+...+++.+ .....+.|+.........++|.|.+++.+|+|.|.|.+...+..+..
T Consensus 12 G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~-~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p~~~~~ 90 (95)
T cd05881 12 GEVAIISCRVKNNDDSVIQLLNPNRQTIYFRD-VRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTDPPQEAY 90 (95)
T ss_pred CCcEEEEEEEccCCccEEEEEecCCcEEEecC-ccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcccCeEEE
Confidence 34688999998888888999997755555444 34457789988875567889999999999999999999766555554
Q ss_pred EEEE
Q psy16425 82 GYLE 85 (163)
Q Consensus 82 ~~l~ 85 (163)
..+.
T Consensus 91 ~~~~ 94 (95)
T cd05881 91 TTIT 94 (95)
T ss_pred EEEE
Confidence 4443
No 60
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.30 E-value=7.7e-11 Score=69.87 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=52.9
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
..+.|.|...+.|.|.|.|++ ++..+.. ...++.....+ ..|.|.+++.+|+|.|+|.+.|. +.....
T Consensus 19 ~~v~L~C~~~g~P~p~v~W~k-~g~~~~~-------~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 87 (95)
T cd05730 19 QSVTLACDADGFPEPTMTWTK-DGEPIES-------GEEKYSFNEDG---SEMTILDVDKLDEAEYTCIAENKAGEQEAE 87 (95)
T ss_pred CCEEEEEeccEeCCCEEEEEE-CCEECcC-------CCCEEEEeCCC---CEEEECCCChhhCEEEEEEEEcCCCeEEEE
Confidence 468899999999999999999 5554321 11333333222 26999999999999999999776 445555
Q ss_pred EEEEEE
Q psy16425 82 GYLEVV 87 (163)
Q Consensus 82 ~~l~v~ 87 (163)
+.|.|.
T Consensus 88 ~~L~V~ 93 (95)
T cd05730 88 IHLKVF 93 (95)
T ss_pred EEEEEE
Confidence 666654
No 61
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.30 E-value=3.7e-11 Score=68.22 Aligned_cols=73 Identities=12% Similarity=0.176 Sum_probs=50.2
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
.++.+.|...+.|.|.|.|++ ++..+..... ....... ...|.|.+++.+|+|.|+|.+.|. +.....
T Consensus 2 ~~~~l~C~~~g~P~p~i~W~~-~g~~~~~~~~------~~~~~~~----~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~ 70 (76)
T cd04978 2 ETGRLDCEAEGIPQPTITWRL-NGVPIEELPP------DPRRRVD----GGTLILSNVQPNDTAVYQCNASNVHGYLLAN 70 (76)
T ss_pred CeEEEEEEceeeCCCEEEEEE-CCEECCCCCC------cceEEcc----CCEEEECCCChhhCEEEEEEEEccCCeEEEe
Confidence 468899999999999999999 5554422110 0011111 128999999999999999999776 444455
Q ss_pred EEEEE
Q psy16425 82 GYLEV 86 (163)
Q Consensus 82 ~~l~v 86 (163)
+.|.|
T Consensus 71 ~~l~V 75 (76)
T cd04978 71 AFVHV 75 (76)
T ss_pred EEEEE
Confidence 55544
No 62
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.30 E-value=5.8e-11 Score=70.71 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=52.5
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
.++.|.|...+.|.|.|+|++ ++..+..... ...+++.+... .....|.|.+++.+|+|.|+|.+.|. +.....
T Consensus 18 ~~v~l~C~~~G~P~P~v~W~~-~~~~~~~~~~---~~~~~~~v~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 92 (97)
T cd05869 18 EQITLTCEASGDPIPSITWRT-STRNISSEEK---TLDGHIVVRSH-ARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQS 92 (97)
T ss_pred CCEEEEEEeeEeCCCEEEEEE-CCccccCCcc---ccCccEEEEcC-ccEEEEEEecCccCcCEEEEEEEecCCCCeeEE
Confidence 568899999999999999999 4443321100 11234433322 12348999999999999999999776 444555
Q ss_pred EEEE
Q psy16425 82 GYLE 85 (163)
Q Consensus 82 ~~l~ 85 (163)
+.|.
T Consensus 93 ~~l~ 96 (97)
T cd05869 93 MYLE 96 (97)
T ss_pred EEEE
Confidence 5554
No 63
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.29 E-value=8.5e-11 Score=69.27 Aligned_cols=63 Identities=21% Similarity=0.276 Sum_probs=45.4
Q ss_pred eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
.+.|.|...+.|.|.+.||+. +..+ ....++..........+|.|.+++.+|+|.|+|.+.|.
T Consensus 18 ~v~L~C~v~g~P~p~i~W~k~-~~~~--------~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 80 (92)
T cd05891 18 TLNLTCTVFGNPDPEVIWFKN-DQDI--------ELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNK 80 (92)
T ss_pred EEEEEEEEEEeCCCeEEEEEC-CEEC--------CCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeC
Confidence 577889888899999999994 4333 12233333222222347999999999999999999765
No 64
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.29 E-value=9.5e-11 Score=68.92 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=48.8
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK 78 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~ 78 (163)
..+.+.|...+.|. .+.|++.++..+. ...|+.....+ ....|.|.++..+|+|.|+|.+.|....
T Consensus 16 ~~v~l~C~~~G~P~-~v~W~k~~g~~~~--------~~~r~~~~~~g-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 81 (92)
T cd05866 16 ESKFFTCTAIGEPE-SIDWYNPQGEKIV--------SSQRVVVQKEG-VRSRLTIYNANIEDAGIYRCQATDAKGQ 81 (92)
T ss_pred CeEEEEEEEEEeCC-eEEEEeCCCeEec--------CCCCEEEEeCC-CeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence 46889999999898 8999985555442 23455554332 2348999999999999999999876433
No 65
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.29 E-value=7.9e-11 Score=68.82 Aligned_cols=70 Identities=19% Similarity=0.308 Sum_probs=50.1
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
.++.|.|...+.|.|.|.|++.+. .+.. ..+.. .. +.+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus 17 ~~v~l~C~~~g~P~p~v~W~k~~~-~~~~--------~~~~~-~~----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 82 (88)
T cd04968 17 QNVTLECFALGNPVPQIKWRKVDG-SMPS--------SAEIS-MS----GAVLKIPNIQFEDEGTYECEAENIKGKDTHQ 82 (88)
T ss_pred CcEEEEEEeeEeCCCEEEEEECCC-cCCC--------ccEEE-Ee----CCEEEECCCCcccCEEEEEEEEECCCcEEEE
Confidence 468899999999999999999543 2211 11111 12 228999999999999999999776 555555
Q ss_pred EEEEE
Q psy16425 82 GYLEV 86 (163)
Q Consensus 82 ~~l~v 86 (163)
+.|.|
T Consensus 83 ~~l~V 87 (88)
T cd04968 83 GRIYV 87 (88)
T ss_pred EEEEE
Confidence 55654
No 66
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.28 E-value=5.7e-11 Score=66.53 Aligned_cols=57 Identities=25% Similarity=0.362 Sum_probs=41.9
Q ss_pred EEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 6 LIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 6 ~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
.+.|...+.|.|++.|+| ++.++.. ...++... . .+|.|.+++.+|+|.|+|.+.+.
T Consensus 2 ~l~c~v~g~P~P~v~W~k-dg~~l~~-------~~~~~~~~-~----~~L~I~~v~~~D~G~YtC~a~~~ 58 (72)
T cd07702 2 RLTPKVKAFPAPEVIWLK-DGLPAAE-------KCSRYHVD-G----YSLVIKDVTEEDAGIYTILLGIK 58 (72)
T ss_pred eEEeeEEEcCCCeEEEEE-CCEECCC-------CCcEEEeC-C----CEEEECcCCHHHCEEEEEEEEcc
Confidence 467888899999999999 5554421 11233221 1 27999999999999999999765
No 67
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.28 E-value=1.5e-10 Score=70.40 Aligned_cols=80 Identities=15% Similarity=0.115 Sum_probs=56.4
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCC---CceEEEEEcccC-CCCCeEEEEEEEeC-CC
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSE---TKAWYLHIREVR-ESDRGWYMCQVNTD-PM 77 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~L~i~~v~-~~d~G~Y~C~~~~~-~~ 77 (163)
.++.|.|.+.+.|.+.+.|++ ++..+... ..|+...... .....|.|.++. .+|.|.|+|.+.|. +.
T Consensus 24 ~~v~L~C~a~G~P~p~i~W~k-~g~~l~~~-------~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~ 95 (109)
T cd05773 24 SDANLVCQAQGVPRVQFRWAK-NGVPLDLG-------NPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGE 95 (109)
T ss_pred CEEEEEEECcccCCCEEEEEE-CCEECCCC-------CCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCcc
Confidence 468999999999999999999 56554211 1233222111 123479999997 69999999999877 55
Q ss_pred ceEeEEEEEEcCC
Q psy16425 78 KSQVGYLEVVVPP 90 (163)
Q Consensus 78 ~~~~~~l~v~~~p 90 (163)
....+.|.+...|
T Consensus 96 ~~~~i~L~~~~~p 108 (109)
T cd05773 96 DSLDIQLVSTSRP 108 (109)
T ss_pred CcEEEEEEecCCC
Confidence 6677777777665
No 68
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.28 E-value=3.4e-11 Score=67.45 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=46.3
Q ss_pred eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEE
Q psy16425 5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGY 83 (163)
Q Consensus 5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~ 83 (163)
+.|.|...+.|.|.+.|++.+ ..+. ..+..... ....|.|.+++.+|+|.|+|.+.|. +.....+.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~-~~~~---------~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 67 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIG-GELP---------ADRTKFEN---FNKTLKIDNVSEEDDGEYRCTASNSLGSARHTIS 67 (71)
T ss_pred CEEEEEeeEecCCeEEEEECC-eECC---------CCceeEec---CCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEE
Confidence 467889999999999999943 3321 11111111 1227999999999999999999776 44444444
Q ss_pred EEE
Q psy16425 84 LEV 86 (163)
Q Consensus 84 l~v 86 (163)
|.|
T Consensus 68 l~V 70 (71)
T cd05731 68 VTV 70 (71)
T ss_pred EEE
Confidence 443
No 69
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.26 E-value=5.9e-11 Score=68.21 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=48.0
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCC-ceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceE
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDT-QTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQ 80 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~ 80 (163)
..+.|.|...+.|.|.|.|++... ......... ....++..... .+|.|.+++.+|+|.|+|.+.|. +....
T Consensus 2 ~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~--~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 75 (81)
T cd05765 2 ETASFHCDVTGRPPPEITWEKQVHGKENLIMRPN--HVRGNVVVTNI----GQLVIYNAQPQDAGLYTCTARNSGGLLRA 75 (81)
T ss_pred CcEEEEeeccccCCCcEEEEecCCCCcceeecCC--cccCCEEEccc----cEEEEccCCcccCEEEEEEEecCCceEEE
Confidence 467899999999999999999521 111000000 00122222222 38999999999999999999776 44444
Q ss_pred eEEE
Q psy16425 81 VGYL 84 (163)
Q Consensus 81 ~~~l 84 (163)
.+.|
T Consensus 76 ~~~l 79 (81)
T cd05765 76 NFPL 79 (81)
T ss_pred EEEE
Confidence 4444
No 70
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.26 E-value=1.5e-10 Score=68.22 Aligned_cols=69 Identities=23% Similarity=0.279 Sum_probs=50.2
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
..+.|.|...+.|.|.+.|++ ++..+ ....|+.+.... ...+|.|.+++.+|+|.|.|.+.|. +.....
T Consensus 19 ~~~~L~C~~~g~P~p~v~W~k-~g~~l--------~~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 88 (92)
T cd05747 19 ESARFSCDVDGEPAPTVTWMR-EGQII--------VSSQRHQITSTE-YKSTFEISKVQMSDEGNYTVVVENSEGKQEAQ 88 (92)
T ss_pred CcEEEEEEEeecCCCEEEEEE-CCEEC--------CCCCcEEEEEcC-CeeEEEECCCCcccCEeEEEEEEcCCCCEeEE
Confidence 468899999999999999999 45443 223445444322 3458999999999999999999776 433333
No 71
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.26 E-value=2e-10 Score=68.08 Aligned_cols=83 Identities=18% Similarity=0.308 Sum_probs=57.3
Q ss_pred cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425 2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQV 81 (163)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~ 81 (163)
...+.|.|...+.+.+.+.|++.++..+.. .........|+.........++|.|.+++.+|+|.|+|.+.........
T Consensus 12 G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~ 90 (95)
T cd05717 12 GGTATLKCRVKNNDNSSLQWSNPNQQTLYF-NDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPVQTAK 90 (95)
T ss_pred CCCEEEEEEECCCCCceEEEeCCCCcEEEe-ccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCCceEE
Confidence 346888998888888999999855544332 2111123467776544445678999999999999999999765544555
Q ss_pred EEEE
Q psy16425 82 GYLE 85 (163)
Q Consensus 82 ~~l~ 85 (163)
+.|.
T Consensus 91 ~~~~ 94 (95)
T cd05717 91 ATVT 94 (95)
T ss_pred EEEE
Confidence 5554
No 72
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.24 E-value=1.6e-10 Score=67.79 Aligned_cols=73 Identities=7% Similarity=0.112 Sum_probs=50.0
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
.++.+.|...+.|.|.|.|++ ++..+.. ..+.... .......|.|.+++.+|.|.|.|.+.|. +.....
T Consensus 16 ~~v~l~C~~~G~P~p~v~W~~-~g~~~~~--------~~~~~~~-~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~ 85 (90)
T cd04972 16 GTATIRCTAEGSPLPKVEWII-AGLIVIQ--------TRTDTLE-TTVDIYNLQLSNITSETQTTVTCTAENPVGQANVS 85 (90)
T ss_pred CcEEEEEEEEEcCCCeEEEEE-CCEEccC--------CccEEEE-ecCCEEEEEEecCCcccCEEEEEEEECCCCceeEE
Confidence 468899999999999999999 5544321 1111111 1122448999999999999999999776 444444
Q ss_pred EEEE
Q psy16425 82 GYLE 85 (163)
Q Consensus 82 ~~l~ 85 (163)
+.|.
T Consensus 86 ~~L~ 89 (90)
T cd04972 86 VQVT 89 (90)
T ss_pred EEEe
Confidence 4443
No 73
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.24 E-value=6.7e-11 Score=68.06 Aligned_cols=62 Identities=19% Similarity=0.446 Sum_probs=44.7
Q ss_pred cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
..++.|.|...+.|.|.+.|++ ++..+... .... ......+|.|.+++.+|+|.|+|.+.|.
T Consensus 9 G~~v~L~C~~~g~p~p~i~W~k-~~~~~~~~--------~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~N~ 70 (82)
T cd05856 9 GSSVRLKCVASGNPRPDITWLK-DNKPLTPT--------EIGE---SRKKKWTLSLKNLKPEDSGKYTCHVSNR 70 (82)
T ss_pred CCeEEEEEEeeEeCCCcEEEEE-CCcCCcCC--------ccce---ecCceEEEEEccCChhhCEEEEEEEEcC
Confidence 4578899999999999999999 44433211 0000 1112358999999999999999999765
No 74
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.23 E-value=1.4e-10 Score=64.55 Aligned_cols=57 Identities=12% Similarity=0.254 Sum_probs=41.2
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
..+.|.|.+.+.|.|.|.|++ ++..+. ...++.. ++..|.|.++ .|+|.|+|.+.|.
T Consensus 2 ~~v~L~C~a~G~P~P~v~W~k-~g~~l~--------~~~~~~~-----~~~~L~i~~~--~d~G~Y~C~A~N~ 58 (69)
T cd05739 2 GSVNLTCVAVGAPMPYVKWMK-GGEELT--------KEDEMPV-----GRNVLELTNI--YESANYTCVAISS 58 (69)
T ss_pred CeEEEEEEeeecCCCEEEEEE-CCEECC--------Cccceec-----CccEEEEecc--ccCeeEEEEEEeC
Confidence 468999999999999999999 444431 1122221 1227889987 4899999999776
No 75
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.23 E-value=2e-10 Score=68.13 Aligned_cols=78 Identities=21% Similarity=0.297 Sum_probs=52.1
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
.++.|.|...+.|.|.|.|++. +..+.... ....+++.... ......|.|.+++.+|+|.|.|.+.|. +.....
T Consensus 17 ~~v~l~C~~~g~p~p~v~W~~~-~~~~~~~~---~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s 91 (96)
T cd05732 17 EQITLTCEAEGDPIPEITWRRA-TRNFSEGD---KSLDGRIVVRG-HARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQS 91 (96)
T ss_pred CcEEEEEEEeEcCCCcEEEEEC-CcccCCCC---ccccceEEEeC-CccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEE
Confidence 4688999999999999999994 43321100 01123444332 223458999999999999999999776 444444
Q ss_pred EEEE
Q psy16425 82 GYLE 85 (163)
Q Consensus 82 ~~l~ 85 (163)
+.|.
T Consensus 92 ~~l~ 95 (96)
T cd05732 92 MYLE 95 (96)
T ss_pred EEEe
Confidence 4443
No 76
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.22 E-value=1.4e-10 Score=65.61 Aligned_cols=64 Identities=17% Similarity=0.343 Sum_probs=44.0
Q ss_pred eEEEeeeec-cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 5 MLIEIGEML-MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 5 ~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
+.|.|...+ .|.|.+.|++ ++..+..... ...+... .......|.|.+++.+|+|.|+|.+.|.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k-~g~~l~~~~~-----~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 65 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFK-DGKELNRKNK-----PRNIKIR-NKKKNSELQINKAKLADSGEYTCVVENI 65 (75)
T ss_pred CEEEEEccCCCCCceEEEEc-CCeeccccCC-----cceEEEE-ecCceEEEEEccCCcccCeEEEEEEEEc
Confidence 468888888 8999999999 5555422110 0111121 1123458999999999999999999776
No 77
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.22 E-value=2.9e-10 Score=64.53 Aligned_cols=71 Identities=20% Similarity=0.336 Sum_probs=48.4
Q ss_pred EEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEEE
Q psy16425 6 LIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGYL 84 (163)
Q Consensus 6 ~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~l 84 (163)
.|.|...+.|.|.|.|++ ++..+.. ....++.....+ ..|.|.++..+|+|.|+|.+.|. +.....+.|
T Consensus 2 ~L~C~v~g~P~p~v~W~k-~~~~l~~------~~~~~~~~~~~~---~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 71 (76)
T cd05736 2 SLRCHAEGIPLPRLTWLK-NGMDITP------KLSKQLTLIANG---SELHISNVRYEDTGAYTCIAKNEAGVDEDISSL 71 (76)
T ss_pred EeEeEeeecCCCEEEEEE-CCEECCC------CCCccEEEeCCC---CEEEECcCCcccCEEEEEEEEcCCCCcceEEEE
Confidence 467888889999999999 5544321 111233333222 26999999999999999999776 444455555
Q ss_pred EE
Q psy16425 85 EV 86 (163)
Q Consensus 85 ~v 86 (163)
.|
T Consensus 72 ~V 73 (76)
T cd05736 72 FV 73 (76)
T ss_pred EE
Confidence 54
No 78
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.21 E-value=4.3e-10 Score=66.08 Aligned_cols=70 Identities=17% Similarity=0.317 Sum_probs=49.2
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC--ceE
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM--KSQ 80 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~--~~~ 80 (163)
.++.|.|.+.+. .|.|.|++ ++..+. ..++.+... ..+|.|.+++.+|+|.|.|.+.|... .+.
T Consensus 19 ~~v~l~C~a~g~-~p~i~W~k-ng~~l~---------~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~ 84 (91)
T cd05740 19 QPVTLTCEAEGQ-ATYIWWVN-NGSLLV---------PPRLQLSND---NRTLTFNNVTRSDTGHYQCEASNEVSNMTSD 84 (91)
T ss_pred CcEEEEEEeCCC-CCEEEEEE-CCEECC---------CCCEEEeCC---CCEEEECcCChhhCEEEEEEEEcCCCCEEee
Confidence 468899999999 99999999 444331 233443322 12799999999999999999987743 233
Q ss_pred eEEEEE
Q psy16425 81 VGYLEV 86 (163)
Q Consensus 81 ~~~l~v 86 (163)
.+.|.|
T Consensus 85 ~~~L~V 90 (91)
T cd05740 85 PYILNV 90 (91)
T ss_pred eEEEEe
Confidence 444443
No 79
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.20 E-value=5.1e-10 Score=66.04 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=45.3
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccC-CCCCeEEEEEEEeCC
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVR-ESDRGWYMCQVNTDP 76 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~~~~ 76 (163)
..+.+.|.+.+.|.|.|+|++ ++..+. ....++... .+ .|.|.++. .+|+|.|.|.+.|..
T Consensus 20 ~~v~l~C~a~G~P~P~i~W~k-~~~~i~-------~~~~~~~~~-~g----~L~I~~~~~~~D~G~Y~C~A~N~~ 81 (93)
T cd05849 20 GKVSVNCRARANPFPIYKWRK-NNLDID-------LTNDRYSMV-GG----NLVINNPDKYKDAGRYVCIVSNIY 81 (93)
T ss_pred CeEEEeCcCccCCCCEEEEEE-CCEEcc-------CCCCeEEEE-CC----EEEECcCCcCCCCEEEEEEEEeCc
Confidence 468999999999999999999 444431 112344333 22 79999985 699999999998763
No 80
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.20 E-value=2.9e-10 Score=65.07 Aligned_cols=58 Identities=17% Similarity=0.329 Sum_probs=42.9
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
..+.+.|...+. .+.|.|+| ++..+. ...++.+... +|.|.+++.+|+|.|+|.+.+.
T Consensus 10 ~~v~l~C~~~~~-~~~v~W~k-~g~~l~--------~~~~~~~~~~-----~L~I~~~~~~DsG~Y~C~a~n~ 67 (79)
T cd04973 10 DLLQLRCRLRDD-VQSINWTK-DGVQLG--------ENNRTRITGE-----EVQIKDAVPRDSGLYACVTSSP 67 (79)
T ss_pred CCEEEEEEecCC-CceEEEee-CCcCCC--------CCceEEEeCC-----EEEECCCChhhCEEEEEEEeCC
Confidence 357888887775 56899999 565552 2334444322 7999999999999999999665
No 81
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.19 E-value=4.8e-10 Score=65.13 Aligned_cols=61 Identities=30% Similarity=0.446 Sum_probs=45.6
Q ss_pred ceeEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 3 ARMLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 3 ~~~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
..+.|.|.. .+.|.+.|.|++ ++..+.. ...++.....+ +|.|.+++.+|+|.|+|.+.|.
T Consensus 12 ~~v~l~C~~~~g~p~p~i~W~k-~g~~~~~-------~~~~~~~~~~~----~L~I~~~~~~D~G~Y~C~a~N~ 73 (86)
T cd05724 12 EMAVLECSPPRGHPEPTVSWRK-DGQPLNL-------DNERVRIVDDG----NLLIAEARKSDEGTYKCVATNM 73 (86)
T ss_pred CCEEEEEECCCCCCCCEEEEEE-CCEECCC-------CCCCEEEccCC----EEEEeECCcccCEEEEEEEEec
Confidence 367888876 688999999999 5544321 12344444333 8999999999999999999876
No 82
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.18 E-value=4.6e-11 Score=69.84 Aligned_cols=65 Identities=28% Similarity=0.314 Sum_probs=50.6
Q ss_pred CcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425 90 PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 90 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~ 156 (163)
|.+...+ ....+.+|+.+.|.|.+.|+|.|.++|++++..+.........++.|.|.+++.+|.+
T Consensus 2 p~i~~~~--~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 66 (88)
T cd05851 2 ADINVKF--KDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEG 66 (88)
T ss_pred CceEEcc--ccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCE
Confidence 4444433 3567889999999999999999999999998776443333345678999999999876
No 83
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.17 E-value=2.8e-10 Score=67.25 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=47.6
Q ss_pred ceeEEEeeeec-----cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-C
Q psy16425 3 ARMLIEIGEML-----MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-P 76 (163)
Q Consensus 3 ~~~~~~~~~~~-----~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~ 76 (163)
..+.|.|...+ .|.+.|.|||.+ ..+.... ....|+... . ..|.|.++..+|+|.|+|.+.|. +
T Consensus 15 ~~~~L~C~~~g~~~~~~p~~~v~Wyk~~-~~~~~~~----~~~~r~~~~-~----~~L~I~~~~~~DsG~Y~C~~~N~~g 84 (94)
T cd05756 15 EPVVIKCPLFYSYIAQSPGLNLTWYKSD-GKTPIPT----EERSRMHQQ-K----DLLWFLPAALEDSGLYTCVVRNSTY 84 (94)
T ss_pred CCeEEECCCCCcccccCCCceEEEEEcC-CCCcccc----cccceeeec-C----CeEEEccCCcccCeEEEEEEcCCCc
Confidence 35788888887 688999999954 3321100 112333322 1 28999999999999999999765 3
Q ss_pred CceEeEEEE
Q psy16425 77 MKSQVGYLE 85 (163)
Q Consensus 77 ~~~~~~~l~ 85 (163)
.....+.|.
T Consensus 85 ~~~~~~~L~ 93 (94)
T cd05756 85 CMKVSISLT 93 (94)
T ss_pred cEEEEEEEE
Confidence 444444443
No 84
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.17 E-value=7.3e-10 Score=63.07 Aligned_cols=63 Identities=14% Similarity=0.259 Sum_probs=42.0
Q ss_pred eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCC----CCCeEEEEEEEeCCC
Q psy16425 5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRE----SDRGWYMCQVNTDPM 77 (163)
Q Consensus 5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~~~~~~~ 77 (163)
+.|.|.+.+.|.|.|+|++ ++..+.. ....++..... +.+|.|..+.. .|+|.|+|.+.|...
T Consensus 1 ~~l~C~a~G~P~P~i~W~k-~g~~l~~------~~~~~~~~~~~---~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G 67 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTR-NGTHFDI------DKDPKVTMKPN---TGTLVINIMNGEKAEAYEGVYQCTARNERG 67 (77)
T ss_pred CEEEeeCcccCCCeEEEEE-CCeECCC------cCCCCEEEeCC---CceEEEeccccCCCCCCCEEEEEEEEcCCC
Confidence 4688999999999999999 5544311 11223333221 22777877764 378999999987643
No 85
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.16 E-value=8.5e-10 Score=65.25 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=44.6
Q ss_pred eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccC-CCCCeEEEEEEEeCC
Q psy16425 4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVR-ESDRGWYMCQVNTDP 76 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~~~~ 76 (163)
++.+.|...+.|.|.|.|++ ++..+... ...++... .+ +|.|.++. .+|+|.|.|.+.|..
T Consensus 21 ~v~l~C~~~G~P~P~i~W~k-~g~~l~~~------~~~~~~~~-~g----~L~i~~~~~~~D~G~Y~C~A~N~~ 82 (94)
T cd05848 21 KVILNCEARGNPVPTYRWLR-NGTEIDTE------SDYRYSLI-DG----NLIISNPSEVKDSGRYQCLATNSI 82 (94)
T ss_pred EEEEEEEeeecCCCEEEEEE-CCeECccC------CCceEEee-CC----eEEEccCCccCcCEEEEEEEEcCC
Confidence 68999999999999999999 55554211 11233322 22 78998885 699999999998763
No 86
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.15 E-value=1e-09 Score=62.48 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=42.9
Q ss_pred eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccC---C-CCCeEEEEEEEeCCCc
Q psy16425 5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVR---E-SDRGWYMCQVNTDPMK 78 (163)
Q Consensus 5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~---~-~d~G~Y~C~~~~~~~~ 78 (163)
+.|.|...+.|.|.|+|++ ++..+.. ....++..... +.+|.|.++. + .|+|.|.|.+.|....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k-~g~~~~~------~~~~~~~~~~~---~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~ 68 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTR-NGKFFNV------AKDPRVSMRRR---SGTLVIDFSGGGRPEDYEGEYQCFARNNLGT 68 (77)
T ss_pred CEEEEeccccCCCEEEEEE-CCEEccC------cCCCcEEEeCC---CceEEEeccCCCCCCCCCEEEEEEEEeccce
Confidence 4688999999999999999 5543311 12334433221 2378888764 2 4699999999887443
No 87
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.14 E-value=6.5e-10 Score=63.28 Aligned_cols=63 Identities=17% Similarity=0.263 Sum_probs=42.8
Q ss_pred eEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCC----CCCeEEEEEEEeCCC
Q psy16425 5 MLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRE----SDRGWYMCQVNTDPM 77 (163)
Q Consensus 5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~~~~~~~ 77 (163)
+.|.|.+.+.|.|.|+|++ ++..+.. ....++..... ...|.|.++.. +|+|.|.|.+.|...
T Consensus 1 i~l~C~~~G~P~P~v~W~k-~g~~l~~------~~~~~~~~~~~---~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G 67 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTR-NGTHFDP------EKDPRVTMKPD---SGTLVIDNMNGGRAEDYEGEYQCYASNELG 67 (77)
T ss_pred CEEEeeCcccCCCeEEEEE-CCeECCC------CCCCCEEEeCC---CCEEEEeccCCCCCcCCCEEEEEEEEcCCC
Confidence 4678999999999999999 5544321 11233333221 22788888754 789999999987743
No 88
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.13 E-value=8.3e-10 Score=63.91 Aligned_cols=79 Identities=10% Similarity=0.147 Sum_probs=48.9
Q ss_pred ceeEEEeeeecc--CCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCce
Q psy16425 3 ARMLIEIGEMLM--AESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKS 79 (163)
Q Consensus 3 ~~~~~~~~~~~~--~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~ 79 (163)
..+.|.|...+. |.+.+.|++.+......... ..+............|.|.+++.+|+|.|+|.+.+. +...
T Consensus 2 e~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~ 76 (84)
T cd05742 2 ETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSM-----VTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQK 76 (84)
T ss_pred CeEEEEEEEEeCCCccEEEEEecCCcccCCceEe-----ecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceE
Confidence 467889999888 88999999744322110000 001111111112348999999999999999999776 4445
Q ss_pred EeEEEEE
Q psy16425 80 QVGYLEV 86 (163)
Q Consensus 80 ~~~~l~v 86 (163)
..+.+.|
T Consensus 77 ~s~~v~v 83 (84)
T cd05742 77 ESTKVNI 83 (84)
T ss_pred EEEEEEE
Confidence 5555544
No 89
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.13 E-value=2.1e-09 Score=63.55 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=45.0
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccC-CCCCeEEEEEEEeCC
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVR-ESDRGWYMCQVNTDP 76 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~~~~ 76 (163)
.++.|.|.+.+.|.+.|+|++ ++..+.. ....++.+.. + +|.|.++. ..|+|.|.|.+.|..
T Consensus 20 ~~v~l~C~a~g~P~p~i~W~~-~g~~l~~------~~~~~~~~~~-g----~L~I~~~~~~~D~G~Y~C~A~N~~ 82 (94)
T cd05850 20 EKVTLGCRARASPPATYRWKM-NGTEIKF------APESRYTLVA-G----NLVINNPQKARDAGSYQCLAINRC 82 (94)
T ss_pred CeEEEEeEceeCCCCEEEEEE-CCEECcc------CCCceEEEEC-C----eEEEccCCccCcCEEEEEEEEcCc
Confidence 368999999999999999999 5554421 1123343332 2 78898765 699999999998763
No 90
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.11 E-value=1.3e-09 Score=61.87 Aligned_cols=65 Identities=17% Similarity=0.376 Sum_probs=42.9
Q ss_pred eEEEeeee-ccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 5 MLIEIGEM-LMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 5 ~~~~~~~~-~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
+.|.|.+. +.|.+.+.||+ ++..+.... ....++.... .....+|.|.+++.+|+|.|+|.+.|.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~-~g~~i~~~~----~~~~~~~~~~-~~~~~~L~I~~~~~~DsG~Y~C~a~N~ 66 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFK-NGKEIGAKN----KPDNKIKIRK-KKKSSELQISKASLADNGEYKCMVSSK 66 (76)
T ss_pred CEEEEecccCCCCCceEEEE-CCcccccCC----CCCceEEEEe-CCcEEEEEECcCCcccCEEEEEEEEeC
Confidence 35778765 36888999999 555542211 0112233222 223458999999999999999999776
No 91
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.08 E-value=2.6e-09 Score=63.27 Aligned_cols=62 Identities=18% Similarity=0.356 Sum_probs=43.7
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEccc-----CCCCCeEEEEEEEeC
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREV-----RESDRGWYMCQVNTD 75 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v-----~~~d~G~Y~C~~~~~ 75 (163)
.++.+.|...+.|.|.|.|+| ++..+... ...+......+ +|.|.++ +..|+|.|.|.+.|.
T Consensus 15 ~~v~l~C~v~g~P~p~i~W~k-~g~~l~~~------~~~~~~~~~~~----~l~i~~v~~~~~~~~D~G~Y~C~a~N~ 81 (95)
T cd05722 15 GPVVLNCSAEGEPPPKIEWKK-DGVLLNLV------SDERRQQLPNG----SLLITSVVHSKHNKPDEGFYQCVAQND 81 (95)
T ss_pred CCEEEeeecccCCCCEEEEEE-CCeECccc------cCcceEEccCC----eEEEeeeeccCCCCCcCEEEEEEEECC
Confidence 468899999999999999999 55544211 11223333332 5666666 689999999999776
No 92
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.08 E-value=7e-09 Score=60.02 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=43.2
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
..+.|.|...+.|.+.+.|++.++........ ..+.... .......|.|.+++.+|+|.|.|.+.+.
T Consensus 2 e~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-----~~~~~~~-~~~~~s~L~I~~~~~~DsG~Y~C~a~n~ 68 (84)
T cd05861 2 ETITVNCIVQGNEVVDFSWTYPGKDIGKGIPE-----VEEVKVP-ATTLRSTLTFPHATVEDSGTYECAAHES 68 (84)
T ss_pred CcEEEEEEEECCCccEEEEEECCccCCCCceE-----EEEEecC-CcEEEEEEEECCCCcCCCEEEEEEEEEC
Confidence 46788999999999999999844321100000 0000000 0112348999999999999999999765
No 93
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=99.07 E-value=5.8e-09 Score=62.74 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=55.0
Q ss_pred cceeEEEeeeeccCCCEEEEEEcCC----ceEEee--e----eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEE
Q psy16425 2 AARMLIEIGEMLMAESTVAWLRVDT----QTILTI--Q----THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQ 71 (163)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~W~k~~~----~~~~~~--~----~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 71 (163)
..+++|.|...+.....+.|||... ..+... . .......+|..+..++ +|.|.+++.+|+|.|+|.
T Consensus 13 G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng----SL~I~~v~~~D~G~Y~~~ 88 (105)
T cd05774 13 GENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG----SLLIQNVTQKDTGFYTLQ 88 (105)
T ss_pred CCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC----cEEEecCCcccCEEEEEE
Confidence 3578999888777777999999421 122111 1 1112346777777766 999999999999999999
Q ss_pred EEeCCCceEeEEEEE
Q psy16425 72 VNTDPMKSQVGYLEV 86 (163)
Q Consensus 72 ~~~~~~~~~~~~l~v 86 (163)
+.+.......+.+.+
T Consensus 89 v~~~~~~~~~~~v~l 103 (105)
T cd05774 89 TITTNFQVEQATVHL 103 (105)
T ss_pred EEeCCccEEEEEEEE
Confidence 976654455555544
No 94
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.07 E-value=1.6e-09 Score=63.40 Aligned_cols=74 Identities=23% Similarity=0.323 Sum_probs=48.0
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG 82 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 82 (163)
.++.|.|...+ |.+.+.|+++ +..+.... ....++..... .|.|.+++++|+|.|.|.+.+........
T Consensus 12 ~~v~L~C~~~~-p~~~i~W~k~-~~~~~~~~----~~~~~~~~~~~-----~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~ 80 (89)
T cd04979 12 NSVFLECSPKS-NLASVVWLFQ-GGPLQRKE----EPEERLLVTED-----GLLIRSVSPADAGVYTCQSVEHGFKQTLA 80 (89)
T ss_pred CcEEEEEeCCC-CCceEEEEEC-Cccccccc----CcCceEEEcCC-----CEEEccCCHHHCEEEEEEEecCccceeEe
Confidence 36888998876 8889999995 43331110 01233333322 58999999999999999997665444444
Q ss_pred EEEEE
Q psy16425 83 YLEVV 87 (163)
Q Consensus 83 ~l~v~ 87 (163)
.+.+.
T Consensus 81 ~~~l~ 85 (89)
T cd04979 81 TYSLN 85 (89)
T ss_pred EEEEE
Confidence 44443
No 95
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.06 E-value=4.3e-09 Score=60.79 Aligned_cols=64 Identities=28% Similarity=0.502 Sum_probs=44.7
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
..+.+.|...+.|.+.|.|++ ++..+.. .............+.|.|.+++.+|+|.|.|.+.+.
T Consensus 10 ~~~~l~C~~~~~p~~~v~W~k-~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 73 (85)
T cd05729 10 STVRLKCPASGNPRPTITWLK-DGKPFKK--------EHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENK 73 (85)
T ss_pred CcEEEEEEcCCCCCCeEEEEE-CCEECcc--------cCceeEEEccCcEEEEEEeECCcccCEEEEEEEEEC
Confidence 468889998889999999999 4443321 111111111123457999999999999999999765
No 96
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=99.04 E-value=1e-08 Score=61.00 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=49.2
Q ss_pred eeEEEeeeeccC---CCEEEEEEcCCc---eEEeee---eeE--EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425 4 RMLIEIGEMLMA---ESTVAWLRVDTQ---TILTIQ---THV--ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV 72 (163)
Q Consensus 4 ~~~~~~~~~~~~---~~~i~W~k~~~~---~~~~~~---~~~--~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~ 72 (163)
++.|.|.....+ ...|.|+|.... .+.... +.. ....+|+.+.....++++|.|.+++.+|+|.|.|.+
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v 81 (98)
T cd05718 2 SVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICEF 81 (98)
T ss_pred CEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEEE
Confidence 567888765543 457999996532 111111 111 122456666654446789999999999999999999
Q ss_pred EeCCCceEe
Q psy16425 73 NTDPMKSQV 81 (163)
Q Consensus 73 ~~~~~~~~~ 81 (163)
...+.....
T Consensus 82 ~~~~~g~~~ 90 (98)
T cd05718 82 ATFPQGNRQ 90 (98)
T ss_pred EeCCCCcEE
Confidence 654433333
No 97
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.04 E-value=1.1e-09 Score=65.25 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=49.2
Q ss_pred CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEcchhhhHhh
Q psy16425 99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~~ 157 (163)
....+..|+.+.|.|.+.|.|+|.+.|++++..+....+... ....|+|.++.++|.+.
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~ 70 (98)
T cd05762 8 EDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGC 70 (98)
T ss_pred cCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEE
Confidence 356788999999999999999999999999998865544332 35789999999999874
No 98
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=99.04 E-value=8.6e-09 Score=61.64 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=51.8
Q ss_pred eeEEEeeeeccC---CCEEEEEEcCCc----eEE--ee--eeeEE-ecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEE
Q psy16425 4 RMLIEIGEMLMA---ESTVAWLRVDTQ----TIL--TI--QTHVI-TKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMC 70 (163)
Q Consensus 4 ~~~~~~~~~~~~---~~~i~W~k~~~~----~~~--~~--~~~~~-~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C 70 (163)
++.|.|.-.... ...|.|++.... .+. .. +...+ ...+|..+... ...+.+|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 577788765444 558999995322 111 11 11111 23467777654 3467899999999999999999
Q ss_pred EEEeCCCceEeEEEE
Q psy16425 71 QVNTDPMKSQVGYLE 85 (163)
Q Consensus 71 ~~~~~~~~~~~~~l~ 85 (163)
.+.+.+.+...+.+.
T Consensus 82 ~v~~~p~g~~~~~~~ 96 (100)
T cd05888 82 RVITFPAGNFEAELV 96 (100)
T ss_pred EEEeCCCCCeeeEEE
Confidence 997754443344333
No 99
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.03 E-value=5e-10 Score=63.26 Aligned_cols=52 Identities=23% Similarity=0.457 Sum_probs=43.4
Q ss_pred CCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce-EEeceEEEEcchhhhHh
Q psy16425 105 EGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ-EDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 105 ~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~ 156 (163)
+|+.+.|.|.+.|.|.|.+.|++++..+....... ...+.|+|.+++.+|.+
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G 53 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQG 53 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCE
Confidence 58999999999999999999999998875543332 25578999999999976
No 100
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.02 E-value=7.2e-09 Score=61.68 Aligned_cols=79 Identities=22% Similarity=0.263 Sum_probs=45.6
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEE--cccCCCCCeEEEEEEEeCCC--c
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHI--REVRESDRGWYMCQVNTDPM--K 78 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i--~~v~~~d~G~Y~C~~~~~~~--~ 78 (163)
.++.|.|...+.|.|.|.|++ ++..+.... .....+......+ ....+.+ ..++.+|+|.|+|.+.|... .
T Consensus 17 ~~~~l~C~~~g~P~p~i~W~k-~g~~l~~~~---~~~~~~~~~~~~~-~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~ 91 (100)
T cd07693 17 DPATLNCKAEGRPTPTIQWLK-NGQPLETDK---DDPRSHRIVLPSG-SLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAV 91 (100)
T ss_pred CeEEEEeeCCcCCCCEEEEEE-CCEECcccc---CCCCcceEEecCC-cEEEEEeeccCCCcCcCEEEEEEEEcccccee
Confidence 468899999999999999999 555442210 0011111122222 1112222 33479999999999987733 3
Q ss_pred eEeEEEEE
Q psy16425 79 SQVGYLEV 86 (163)
Q Consensus 79 ~~~~~l~v 86 (163)
+..+.|.|
T Consensus 92 s~~~~l~v 99 (100)
T cd07693 92 SRNASLEV 99 (100)
T ss_pred cceEEEEe
Confidence 34444443
No 101
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=99.01 E-value=8e-09 Score=60.72 Aligned_cols=80 Identities=13% Similarity=0.199 Sum_probs=53.1
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEe-e------eeeE--EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILT-I------QTHV--ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN 73 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~-~------~~~~--~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~ 73 (163)
.+|.|.|...+.....|.|++........ . .... ....+|+.+..+ ++|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~----~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 2 ESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN----GSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC----ceEEEccCCchhcEEEEEEEE
Confidence 57889998887778899999954322111 0 0011 123456666554 499999999999999999996
Q ss_pred eCCCceEeEEEEE
Q psy16425 74 TDPMKSQVGYLEV 86 (163)
Q Consensus 74 ~~~~~~~~~~l~v 86 (163)
..........+.+
T Consensus 78 ~~~~~~~~~~~~l 90 (92)
T cd05741 78 STNGVTENAKFFL 90 (92)
T ss_pred cCCCcEEEEEEEE
Confidence 5554444444443
No 102
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.00 E-value=1.6e-09 Score=62.89 Aligned_cols=57 Identities=25% Similarity=0.414 Sum_probs=49.4
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~ 156 (163)
...+..|+++.|.|.+.|.|.|.+.|++++.++....+....++.|.|.++..+|.+
T Consensus 8 ~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G 64 (85)
T cd05728 8 DTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSG 64 (85)
T ss_pred ccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCE
Confidence 567889999999999999999999999999987655555567789999999999876
No 103
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=99.00 E-value=2.3e-08 Score=60.82 Aligned_cols=87 Identities=21% Similarity=0.318 Sum_probs=55.4
Q ss_pred CcceeEEEeeeeccC----------CCEEEEEEcC-CceE--E-eeeeeE---EecCCeEEEEeC--CCceEEEEEcccC
Q psy16425 1 MAARMLIEIGEMLMA----------ESTVAWLRVD-TQTI--L-TIQTHV---ITKNHRIGVTHS--ETKAWYLHIREVR 61 (163)
Q Consensus 1 ~~~~~~~~~~~~~~~----------~~~i~W~k~~-~~~~--~-~~~~~~---~~~~~r~~~~~~--~~~~~~L~i~~v~ 61 (163)
|..++.|.|.....+ ...|.|++.. +... . ..+... ....+|+.+... ..++.+|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 467899999876543 3779999963 2221 1 111111 123467776542 3467899999999
Q ss_pred CCCCeEEEEEEEeC-CCceEeEEEEEE
Q psy16425 62 ESDRGWYMCQVNTD-PMKSQVGYLEVV 87 (163)
Q Consensus 62 ~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 87 (163)
.+|+|.|.|.+... ......+.|.|.
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 99999999999654 334444555553
No 104
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.99 E-value=1.8e-08 Score=60.16 Aligned_cols=84 Identities=18% Similarity=0.225 Sum_probs=51.2
Q ss_pred ceeEEEeeeecc---CCCEEEEEEcCCceEE-ee-eeeE------EecCCeEEEEeC--CCceEEEEEcccCCCCCeEEE
Q psy16425 3 ARMLIEIGEMLM---AESTVAWLRVDTQTIL-TI-QTHV------ITKNHRIGVTHS--ETKAWYLHIREVRESDRGWYM 69 (163)
Q Consensus 3 ~~~~~~~~~~~~---~~~~i~W~k~~~~~~~-~~-~~~~------~~~~~r~~~~~~--~~~~~~L~i~~v~~~d~G~Y~ 69 (163)
.++.|.|...+. ....|.|++....... .. .+.. ....+|+.+... ..++.+|.|.+++.+|+|.|+
T Consensus 2 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~ 81 (100)
T cd05713 2 EDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLYT 81 (100)
T ss_pred CcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEEE
Confidence 467888876532 2347899996432221 11 1111 112357766543 246789999999999999999
Q ss_pred EEEEeCCCceEeEEEEEE
Q psy16425 70 CQVNTDPMKSQVGYLEVV 87 (163)
Q Consensus 70 C~~~~~~~~~~~~~l~v~ 87 (163)
|.+.+.+.. ....+.+.
T Consensus 82 C~v~~~~~~-~~~~i~l~ 98 (100)
T cd05713 82 CFFQSDGFY-EEATVELK 98 (100)
T ss_pred EEEecCCcE-EEEEEEEE
Confidence 999765433 44444443
No 105
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.99 E-value=3e-08 Score=60.34 Aligned_cols=86 Identities=19% Similarity=0.259 Sum_probs=54.3
Q ss_pred CcceeEEEeeeeccC------------CCEEEEEEcCC--c-eEE-eeeeeE---EecCCeEEEEeC--CCceEEEEEcc
Q psy16425 1 MAARMLIEIGEMLMA------------ESTVAWLRVDT--Q-TIL-TIQTHV---ITKNHRIGVTHS--ETKAWYLHIRE 59 (163)
Q Consensus 1 ~~~~~~~~~~~~~~~------------~~~i~W~k~~~--~-~~~-~~~~~~---~~~~~r~~~~~~--~~~~~~L~i~~ 59 (163)
+..++.|.|...... .+.|.|+|... . .+. +..... ....+|+.+... ..++.+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 356788888765432 46999998631 1 222 222211 123458877652 34678999999
Q ss_pred cCCCCCeEEEEEEEeC-CCceEeEEEEE
Q psy16425 60 VRESDRGWYMCQVNTD-PMKSQVGYLEV 86 (163)
Q Consensus 60 v~~~d~G~Y~C~~~~~-~~~~~~~~l~v 86 (163)
++.+|+|.|.|.+... ........|.|
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v 108 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQV 108 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEE
Confidence 9999999999999643 33344444444
No 106
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.99 E-value=1.1e-08 Score=60.98 Aligned_cols=74 Identities=15% Similarity=0.129 Sum_probs=49.7
Q ss_pred ceeEEEeeeeccCCC-EEEEEEcCCceEEeeeeeEEecCCeEEEEeCC---CceEEEEEcccCCCC-CeEEEEEEEeC-C
Q psy16425 3 ARMLIEIGEMLMAES-TVAWLRVDTQTILTIQTHVITKNHRIGVTHSE---TKAWYLHIREVRESD-RGWYMCQVNTD-P 76 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~L~i~~v~~~d-~G~Y~C~~~~~-~ 76 (163)
..+.|.|...+.|.| .|.|++ ++..+... ...|+.+.... ....+|.|.+++.+| .|.|.|.+.|. +
T Consensus 17 ~~v~L~C~~~g~P~P~~v~W~~-~~~~i~~~------~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G 89 (98)
T cd05758 17 DKGRVECFIFSTPPPDRIVWTW-KENELESG------SSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG 89 (98)
T ss_pred CcEEEEEEEcccCCCCEeEEEE-CCEEccCC------CCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCC
Confidence 468899999999999 699999 55444211 12345444321 123479999999955 89999999776 4
Q ss_pred CceEeEE
Q psy16425 77 MKSQVGY 83 (163)
Q Consensus 77 ~~~~~~~ 83 (163)
.....+.
T Consensus 90 ~~~~~~~ 96 (98)
T cd05758 90 SGTAIIS 96 (98)
T ss_pred cccEEEE
Confidence 4444443
No 107
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.98 E-value=2.1e-08 Score=59.20 Aligned_cols=83 Identities=14% Similarity=0.180 Sum_probs=53.6
Q ss_pred eeEEEeeee-ccCCCEEEEEEcCCc---eEEeee---eeE--EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425 4 RMLIEIGEM-LMAESTVAWLRVDTQ---TILTIQ---THV--ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT 74 (163)
Q Consensus 4 ~~~~~~~~~-~~~~~~i~W~k~~~~---~~~~~~---~~~--~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~ 74 (163)
++.|.|.-. ......|.|.|..+. .+.... +.. ....+|+.+.....++.+|.|.+++.+|+|.|.|.+.+
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t 81 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT 81 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence 456666654 234468999985431 222111 111 13456887765556788999999999999999999987
Q ss_pred CCCceEeEEEEE
Q psy16425 75 DPMKSQVGYLEV 86 (163)
Q Consensus 75 ~~~~~~~~~l~v 86 (163)
.+.++..+.+.+
T Consensus 82 fP~G~~~~~~~l 93 (96)
T cd05887 82 FPLGNTQSSTTV 93 (96)
T ss_pred CCCCCeeEEEEE
Confidence 766655554443
No 108
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.98 E-value=2e-08 Score=60.65 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=52.7
Q ss_pred cceeEEEeeeecc------CCCEEEEEEcC--C---ceEEee-eeeE---EecCCeEEEEeCCCceEEEEEcccCCCCCe
Q psy16425 2 AARMLIEIGEMLM------AESTVAWLRVD--T---QTILTI-QTHV---ITKNHRIGVTHSETKAWYLHIREVRESDRG 66 (163)
Q Consensus 2 ~~~~~~~~~~~~~------~~~~i~W~k~~--~---~~~~~~-~~~~---~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G 66 (163)
..++.|.|..... ....|.|++.. . ..+... +... .....|+.+.....++.+|.|.+++.+|+|
T Consensus 2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~G 81 (106)
T cd05714 2 GGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDSG 81 (106)
T ss_pred CCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHCE
Confidence 4578899986654 35799999962 1 122221 1111 122334444333457889999999999999
Q ss_pred EEEEEEEeC-CCceEeEEEEE
Q psy16425 67 WYMCQVNTD-PMKSQVGYLEV 86 (163)
Q Consensus 67 ~Y~C~~~~~-~~~~~~~~l~v 86 (163)
.|.|.+.+. ......+.|.|
T Consensus 82 ~Y~C~v~~~~~~~~~~v~L~V 102 (106)
T cd05714 82 RYRCEVIDGIEDEQDTVELEV 102 (106)
T ss_pred EEEEEEEcCCCceEEEEEEEE
Confidence 999999654 23344444444
No 109
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.98 E-value=1.4e-09 Score=63.56 Aligned_cols=57 Identities=28% Similarity=0.461 Sum_probs=47.1
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~ 156 (163)
...+.+|+.+.|.|.+.|.|.|.+.|++++..+.........++.|.|.+++.+|.+
T Consensus 10 ~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G 66 (88)
T cd04968 10 DTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEG 66 (88)
T ss_pred ceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCE
Confidence 556788999999999999999999999988766444333346789999999999875
No 110
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.98 E-value=2e-08 Score=60.68 Aligned_cols=84 Identities=18% Similarity=0.223 Sum_probs=52.5
Q ss_pred ceeEEEeeeecc------CCCEEEEEEcCCc-----eEEeeeeeE----EecCCeEEEEeCCCceEEEEEcccCCCCCeE
Q psy16425 3 ARMLIEIGEMLM------AESTVAWLRVDTQ-----TILTIQTHV----ITKNHRIGVTHSETKAWYLHIREVRESDRGW 67 (163)
Q Consensus 3 ~~~~~~~~~~~~------~~~~i~W~k~~~~-----~~~~~~~~~----~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~ 67 (163)
.++.|.|..... ....|.|++.... .++...... ....+|+.+.....++.+|.|.+++.+|+|.
T Consensus 3 ~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~DsG~ 82 (106)
T cd05877 3 GNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDYGR 82 (106)
T ss_pred CcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHCEE
Confidence 478888976554 3467999996421 111111111 1234677775544567899999999999999
Q ss_pred EEEEEEeC-CCceEeEEEEE
Q psy16425 68 YMCQVNTD-PMKSQVGYLEV 86 (163)
Q Consensus 68 Y~C~~~~~-~~~~~~~~l~v 86 (163)
|.|.+.+. +.....+.|.|
T Consensus 83 Y~C~v~~~~~~~~~~~~l~v 102 (106)
T cd05877 83 YRCEVIDGLEDESVVVALRL 102 (106)
T ss_pred EEEEEEecccceEEEEEEEE
Confidence 99999553 33333344443
No 111
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.97 E-value=3.1e-09 Score=62.60 Aligned_cols=58 Identities=19% Similarity=0.421 Sum_probs=47.2
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-----EeceEEEEcchhhhHhh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-----DFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~v~~~~~~~ 157 (163)
...+.+|+++.|.|.+.|.|.|.+.|++++.++........ ....|.|.+++.+|++.
T Consensus 10 ~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 72 (92)
T cd05737 10 VVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGK 72 (92)
T ss_pred eEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEE
Confidence 56788999999999999999999999999988765543332 12479999999999864
No 112
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.96 E-value=1.1e-08 Score=60.10 Aligned_cols=60 Identities=18% Similarity=0.263 Sum_probs=43.3
Q ss_pred eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccC-CCCCeEEEEEEEeC
Q psy16425 4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVR-ESDRGWYMCQVNTD 75 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~~~ 75 (163)
.+.|.|...+.|.+.|+|++ ++..+.. ....++.... + .|.|.++. .+|+|.|+|.+.|.
T Consensus 21 ~~~l~C~~~g~p~p~i~W~k-~~~~l~~------~~~~~~~~~~-~----~L~i~~~~~~~d~G~Y~C~a~N~ 81 (91)
T cd04967 21 KVSLNCRARGSPPPTYRWLM-NGTEIDD------EPDSRYSLVG-G----NLVISNPSKAKDAGRYQCLASNI 81 (91)
T ss_pred EEEEEEeeeEcCCCEEEEEE-CCEECCC------CCCCCEEEEC-C----EEEEecCCccCCCEEEEEEEEcC
Confidence 58899999999999999999 5554421 1122333322 2 78898886 59999999999776
No 113
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.96 E-value=1.4e-08 Score=58.91 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=42.5
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
..+.|.|... .+.+.|.|++ ++..+... ..|+.+.. + .|.|.+++.+|+|.|+|.+...
T Consensus 12 ~~v~L~C~~~-~~~~~i~W~~-ng~~i~~~-------~~r~~~~~-~----~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 12 NNAELKCSPK-SNLARVVWKF-DGKVLTPE-------SAKYLLYR-D----GLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CCEEEEEECC-CCCCeEEEEE-CCEECCCC-------CceEEEEC-C----cEEEeCCCHHHCEEEEEEEEec
Confidence 3577888765 4678999999 66655221 13444433 2 6999999999999999999655
No 114
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.95 E-value=1.6e-08 Score=59.39 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=42.0
Q ss_pred eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425 4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP 76 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~ 76 (163)
.+.|.|.. ..|.+.|.||+.++..... .......|+.... .+|.|.+++++|+|.|+|.+.+..
T Consensus 13 ~v~L~C~~-~~p~p~v~Wykq~~g~~~~---~~~~~~~r~~~~~-----~~L~I~~~~~~DsG~Y~C~a~~~~ 76 (91)
T cd05871 13 STFLECLP-KSPQASVKWLFQRGGDQRK---EEVKTEERLIHTE-----RGLLLRSLQRSDAGVYTCTAVEHS 76 (91)
T ss_pred cEEEEEEC-CCCCceEEEEEECCCCCcc---ccccccccEEEec-----CeEEEeeCChhHCEEEEEEEEccC
Confidence 57788875 5888999999853211100 0011223444332 269999999999999999996543
No 115
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.95 E-value=1.4e-09 Score=61.19 Aligned_cols=51 Identities=20% Similarity=0.374 Sum_probs=43.1
Q ss_pred CCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-EeceEEEEcchhhhHh
Q psy16425 106 GSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-DFPFFKRTKKKKKKKK 156 (163)
Q Consensus 106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-~~~~l~i~~v~~~~~~ 156 (163)
|+++.|.|.+.|.|.|.+.|++++..+....+... .++.|.|.+++.+|.+
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G 52 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEG 52 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCE
Confidence 67899999999999999999999987765555443 5578999999999976
No 116
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.95 E-value=1.3e-08 Score=60.46 Aligned_cols=83 Identities=14% Similarity=0.231 Sum_probs=51.8
Q ss_pred cceeEEEeeeec-cCCCEEEEEEcCCceEEeee----ee--EEe--cCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425 2 AARMLIEIGEML-MAESTVAWLRVDTQTILTIQ----TH--VIT--KNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV 72 (163)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~----~~--~~~--~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~ 72 (163)
...|.|.|.... .....|.|++.....+.... .. .+. ..+|+.+. ..+++|.|.+++.+|+|.|.|.+
T Consensus 4 G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~---~~~~sL~I~~~~~~DsG~Y~c~v 80 (97)
T cd05775 4 GGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFS---QNDYSLQISNLKMEDAGSYRAEI 80 (97)
T ss_pred CCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEec---CCceeEEECCCchHHCEEEEEEE
Confidence 457889997765 66678999995322222211 01 111 12345442 23579999999999999999999
Q ss_pred EeCCCceEeEEEEEE
Q psy16425 73 NTDPMKSQVGYLEVV 87 (163)
Q Consensus 73 ~~~~~~~~~~~l~v~ 87 (163)
...........+.++
T Consensus 81 ~~~~~~~~~~~f~L~ 95 (97)
T cd05775 81 NTKNGVTITKEFTLH 95 (97)
T ss_pred EcCCCCeEEEEEEEE
Confidence 765544444444443
No 117
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.94 E-value=4.2e-08 Score=58.38 Aligned_cols=80 Identities=13% Similarity=0.261 Sum_probs=50.9
Q ss_pred eeEEEeeeecc-C---CCEEEEEEcCC---ceEEeeee-----eEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEE
Q psy16425 4 RMLIEIGEMLM-A---ESTVAWLRVDT---QTILTIQT-----HVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQ 71 (163)
Q Consensus 4 ~~~~~~~~~~~-~---~~~i~W~k~~~---~~~~~~~~-----~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 71 (163)
++.|.|.-... | ...|.|.+..+ ..+..... ......+|+.+.....++.+|.|.+++.+|+|.|.|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 56677765422 2 23799998521 12221221 1113457888776666788999999999999999999
Q ss_pred EEeCCCceEeEE
Q psy16425 72 VNTDPMKSQVGY 83 (163)
Q Consensus 72 ~~~~~~~~~~~~ 83 (163)
+.+.+..+....
T Consensus 82 v~t~P~g~~~~~ 93 (99)
T cd05886 82 FATFPTGNRESQ 93 (99)
T ss_pred EEeCCCCCeEEE
Confidence 988644443333
No 118
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.94 E-value=4.7e-09 Score=61.74 Aligned_cols=61 Identities=18% Similarity=0.349 Sum_probs=47.5
Q ss_pred eeEEEee-eeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCe-EEEEEEEeCC
Q psy16425 4 RMLIEIG-EMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRG-WYMCQVNTDP 76 (163)
Q Consensus 4 ~~~~~~~-~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~~~~~~ 76 (163)
.++|.|. ..+.|.|.|.|++.+...+ ..+.|+.+...+ .|.|.+|+.+|+| .|.|.+.+..
T Consensus 20 ~~~L~C~pP~g~P~P~i~W~~~~~~~i--------~~~~Ri~~~~~G----nL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 20 SVVLPCNPPKSAVPLRIYWMNSDLLHI--------TQDERVSMGQNG----NLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred CEEEEecCCCCCCCCEEEEECCCCccc--------cccccEEECCCc----eEEEEEEehhhCCCCeEEEEEccc
Confidence 5788896 7999999999997432222 235677766655 8999999999999 7999997664
No 119
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.93 E-value=5.1e-09 Score=61.66 Aligned_cols=67 Identities=27% Similarity=0.555 Sum_probs=51.9
Q ss_pred CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEcchhhhHhh
Q psy16425 89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~~ 157 (163)
+|.+...+ ....+.+|+.+.|.|.+.|+|.|.+.|++++..+....+... ..+.|.|.++..+|.+.
T Consensus 3 ~~~~~~~p--~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 73 (92)
T cd05747 3 PATILTKP--RSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGN 73 (92)
T ss_pred CCcccccC--ccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEe
Confidence 45565544 367889999999999999999999999999987754433332 23589999999988764
No 120
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.93 E-value=4e-09 Score=62.44 Aligned_cols=58 Identities=26% Similarity=0.436 Sum_probs=45.8
Q ss_pred CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEec-CCce--EEeceEEEEcchhhhHh
Q psy16425 99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ-GNGQ--EDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~--~~~~~l~i~~v~~~~~~ 156 (163)
....+..|+++.|.|.+.|.|.|.+.|++++..+... .... ..+..|+|.+++.+|.+
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 71 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEA 71 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCE
Confidence 3456889999999999999999999999999877544 1111 14467999999998865
No 121
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.92 E-value=5.5e-08 Score=57.48 Aligned_cols=83 Identities=24% Similarity=0.263 Sum_probs=55.0
Q ss_pred eEEEeeee-ccCCCEEEEEEcCC---ceEEeee---eeEE--ecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 5 MLIEIGEM-LMAESTVAWLRVDT---QTILTIQ---THVI--TKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 5 ~~~~~~~~-~~~~~~i~W~k~~~---~~~~~~~---~~~~--~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
+.|.|.-. .....+|.|.|..+ ..+.... +..+ ...+|+.+......+.+|.|.+++.+|+|.|+|.+.+.
T Consensus 3 vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t~ 82 (96)
T cd05889 3 MKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVTY 82 (96)
T ss_pred EEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEEeC
Confidence 44555443 23467888998643 1232221 1112 33578887765556789999999999999999999888
Q ss_pred CCceEeEEEEEE
Q psy16425 76 PMKSQVGYLEVV 87 (163)
Q Consensus 76 ~~~~~~~~l~v~ 87 (163)
+.+.....+.|.
T Consensus 83 P~g~~~~~i~~~ 94 (96)
T cd05889 83 PQGSWEKVIEVV 94 (96)
T ss_pred CCCCeEEEEEEE
Confidence 777766666553
No 122
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.92 E-value=3e-08 Score=58.93 Aligned_cols=78 Identities=23% Similarity=0.267 Sum_probs=48.5
Q ss_pred ceeEEEeeeeccC-CCEEEEEEcCCc---eEEee---eeeEE--ecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425 3 ARMLIEIGEMLMA-ESTVAWLRVDTQ---TILTI---QTHVI--TKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN 73 (163)
Q Consensus 3 ~~~~~~~~~~~~~-~~~i~W~k~~~~---~~~~~---~~~~~--~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~ 73 (163)
.++.|.|.-.... ...|.|++..+. .+... .+... ...+|..+.....++.+|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~~ 81 (97)
T cd05846 2 GNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIFN 81 (97)
T ss_pred CcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEEE
Confidence 4678888643332 247999985432 11111 11111 223455555444567899999999999999999997
Q ss_pred eCCCceE
Q psy16425 74 TDPMKSQ 80 (163)
Q Consensus 74 ~~~~~~~ 80 (163)
..+....
T Consensus 82 ~~p~g~~ 88 (97)
T cd05846 82 TFPDGSK 88 (97)
T ss_pred eCCCCCe
Confidence 6654443
No 123
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.91 E-value=5.8e-09 Score=62.41 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=47.3
Q ss_pred CcEEEeCCCcEEEEeEecc-CCCCeEEEEECCeEEEecCCce--E-------EeceEEEEcchhhhHhh
Q psy16425 99 TDMVIREGSNVTLKCAASG-SPKPNITWRREGGELIAQGNGQ--E-------DFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 99 ~~~~~~~g~~~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~~~--~-------~~~~l~i~~v~~~~~~~ 157 (163)
....+.+|+++.|.|.+.| .|+|.+.|+++|.++....... . .+..|.|.+|.++|++.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~ 79 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGT 79 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCee
Confidence 3677889999999999999 8999999999998876432221 1 24789999999999874
No 124
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.91 E-value=1.8e-08 Score=59.20 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=38.9
Q ss_pred eeEEEeeeec-----cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 4 RMLIEIGEML-----MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 4 ~~~~~~~~~~-----~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
...|.|.... .|.|.|.||| ++.++. ...+. .... ..|.|.++..+|+|.|+|.+.+.
T Consensus 12 ~~~l~Cp~~~~~~~~~~~p~i~Wyk-~~~~i~--------~~~~~-~~~~----~~L~I~~v~~~DsG~YtC~~~n~ 74 (92)
T cd05757 12 GGKIVCPDLDDFKNENTLPPVQWYK-DCKLLE--------GDRKR-FVKG----SKLLIQNVTEEDAGNYTCKLTFT 74 (92)
T ss_pred CCEEECCChHHccCCCCCCcEEEeE-CCEECC--------CCccE-EecC----CEEEEeeCChhhCEEEEEEEEec
Confidence 3456665422 3678999999 565542 11221 1122 28999999999999999999765
No 125
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.91 E-value=9.6e-08 Score=58.24 Aligned_cols=87 Identities=17% Similarity=0.272 Sum_probs=57.1
Q ss_pred CcceeEEEeeeeccC-----------CCEEEEEEcC---------CceE-EeeeeeE---EecCCeEEEEeCC--CceEE
Q psy16425 1 MAARMLIEIGEMLMA-----------ESTVAWLRVD---------TQTI-LTIQTHV---ITKNHRIGVTHSE--TKAWY 54 (163)
Q Consensus 1 ~~~~~~~~~~~~~~~-----------~~~i~W~k~~---------~~~~-~~~~~~~---~~~~~r~~~~~~~--~~~~~ 54 (163)
|++++.|+|.....| ...|.|++.. ...+ .+.++.. ....+|..+.... .++.+
T Consensus 1 ~~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~as 80 (117)
T cd05901 1 LSGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDAS 80 (117)
T ss_pred CCCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceE
Confidence 578899999887443 3489999851 1122 2222221 2346788876544 47889
Q ss_pred EEEcccCCCCCeEEEEEEEeC-CCceEeEEEEEE
Q psy16425 55 LHIREVRESDRGWYMCQVNTD-PMKSQVGYLEVV 87 (163)
Q Consensus 55 L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 87 (163)
|.|.+++.+|+|.|.|++... ........|.|.
T Consensus 81 L~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 81 LTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred EEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 999999999999999999544 333444455543
No 126
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.91 E-value=4.6e-09 Score=61.06 Aligned_cols=58 Identities=22% Similarity=0.472 Sum_probs=47.2
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEec-CCceE----EeceEEEEcchhhhHhh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ-GNGQE----DFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~----~~~~l~i~~v~~~~~~~ 157 (163)
...+.+|+.+.|.|.+.|.|.|.+.|++++.++... .+... ....|.|.++.++|++.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~ 66 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGV 66 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEE
Confidence 566889999999999999999999999999988643 22222 24679999999999864
No 127
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.90 E-value=3.3e-09 Score=60.21 Aligned_cols=51 Identities=24% Similarity=0.433 Sum_probs=41.8
Q ss_pred CCcEEEEeEeccCCCCeEEEEECCeEEEecC---CceEEeceEEEEcchhhhHh
Q psy16425 106 GSNVTLKCAASGSPKPNITWRREGGELIAQG---NGQEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~---~~~~~~~~l~i~~v~~~~~~ 156 (163)
|+++.|.|.+.|.|.|.++|++++.++.... ......+.|.|.++..+|++
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G 54 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTA 54 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCE
Confidence 6789999999999999999999998875432 22235678999999999876
No 128
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.89 E-value=9.9e-09 Score=60.48 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=48.1
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEe-eeee----EEecCCeEEEEeC--CCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILT-IQTH----VITKNHRIGVTHS--ETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~-~~~~----~~~~~~r~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
..+.|.|.....+.+.|.||+.+...+.- .... ......|+..... +.++++|.|.+++.+|+|.|+|.+.+.
T Consensus 8 ~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~v~~~ 87 (94)
T cd07690 8 DTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICEVEDK 87 (94)
T ss_pred CCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEEECCc
Confidence 47899999988999999999643222110 0000 0122344444432 235788999999999999999999543
No 129
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.87 E-value=2e-09 Score=60.29 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=39.5
Q ss_pred EEEEeEeccCCCCeEEEEECCeEEEec-CCceEEeceEEEEcchhhhHhh
Q psy16425 109 VTLKCAASGSPKPNITWRREGGELIAQ-GNGQEDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~~~~~l~i~~v~~~~~~~ 157 (163)
+.|.|.+.|.|.|++.|++++.++... ......+..|.|.+|..+|+++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~ 50 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGI 50 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEE
Confidence 478999999999999999999887543 2223455689999999999874
No 130
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.87 E-value=6.2e-09 Score=61.14 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=46.0
Q ss_pred CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--EeceEEEEcchhhhHhh
Q psy16425 99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--DFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--~~~~l~i~~v~~~~~~~ 157 (163)
....+.+|+++.|.|.+.|. .|.+.|++++..+.... ... .++.|+|.+++++|.+.
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~-~~~~~~~~~L~I~~v~~~D~G~ 69 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPR-LQLSNDNRTLTFNNVTRSDTGH 69 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCC-EEEeCCCCEEEECcCChhhCEE
Confidence 35678899999999999999 99999999998865432 222 45689999999999763
No 131
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.86 E-value=6.1e-08 Score=58.79 Aligned_cols=86 Identities=20% Similarity=0.255 Sum_probs=54.7
Q ss_pred CcceeEEEeeeecc-------CCCEEEEEEcC-----Cc-eEEe-eee---eEEecCCeEEEEeCC--CceEEEEEcccC
Q psy16425 1 MAARMLIEIGEMLM-------AESTVAWLRVD-----TQ-TILT-IQT---HVITKNHRIGVTHSE--TKAWYLHIREVR 61 (163)
Q Consensus 1 ~~~~~~~~~~~~~~-------~~~~i~W~k~~-----~~-~~~~-~~~---~~~~~~~r~~~~~~~--~~~~~L~i~~v~ 61 (163)
|.+.+.|.|..... ..+.|.|.+.. .. .+.. .+. ......+|+.+.... .++.+|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 45778899984422 24799999852 11 1111 111 123456788887643 368899999999
Q ss_pred CCCCeEEEEEEEeC-CCceEeEEEEE
Q psy16425 62 ESDRGWYMCQVNTD-PMKSQVGYLEV 86 (163)
Q Consensus 62 ~~d~G~Y~C~~~~~-~~~~~~~~l~v 86 (163)
.+|+|.|.|.+... ........|.|
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V 106 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEV 106 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEE
Confidence 99999999999653 22334444444
No 132
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.85 E-value=7.9e-08 Score=52.45 Aligned_cols=62 Identities=21% Similarity=0.223 Sum_probs=40.3
Q ss_pred ceeEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEE
Q psy16425 3 ARMLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQV 72 (163)
Q Consensus 3 ~~~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~ 72 (163)
..+.|.|.. ...+...+.|++.+................. ....|.|.+++.+|+|.|.|.+
T Consensus 2 ~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 2 SSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVS--------STSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp SEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTE--------EEEEEEESSCTGGGTEEEEEEE
T ss_pred CeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccce--------eeeEEEEccCCHHHCEEEEEEC
Confidence 357788887 8889999999996544332211111111111 0013999999999999999986
No 133
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.85 E-value=7.5e-09 Score=58.22 Aligned_cols=51 Identities=20% Similarity=0.342 Sum_probs=42.4
Q ss_pred CCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-EeceEEEEcchhhhHh
Q psy16425 106 GSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-DFPFFKRTKKKKKKKK 156 (163)
Q Consensus 106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-~~~~l~i~~v~~~~~~ 156 (163)
|+++.|.|.+.|.|.|.++|++++..+....+... ..+.|.|.+|+++|++
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G 52 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEG 52 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCE
Confidence 67899999999999999999999988765544432 4467999999999976
No 134
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.84 E-value=1.7e-08 Score=57.55 Aligned_cols=61 Identities=21% Similarity=0.325 Sum_probs=42.5
Q ss_pred ceeEEEeeeeccCC-CEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425 3 ARMLIEIGEMLMAE-STVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQV 81 (163)
Q Consensus 3 ~~~~~~~~~~~~~~-~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~ 81 (163)
.++.|.|...+.|. ..+.||+ ++..+.. . ..+|.|.++ .+|+|.|+|.+.+. ..+..
T Consensus 16 ~~V~L~C~~~~~p~~~~~~W~k-ng~~l~~---------------~----~~~l~i~~~-~~dsG~Y~C~a~~~-~~S~~ 73 (78)
T cd05752 16 EKVTLTCNGFNSPEQNSTQWYH-NGKLLET---------------T----TNSYRIRAA-NNDSGEYRCQTQGS-SLSDP 73 (78)
T ss_pred CCEEEEEeCCCCCCCccEEEEE-CCEEeec---------------c----CCeEEEeec-ccCCEEeEEECCCC-cCCCC
Confidence 46889999888775 4699999 5554310 0 117999999 99999999999543 34443
Q ss_pred EEEE
Q psy16425 82 GYLE 85 (163)
Q Consensus 82 ~~l~ 85 (163)
+.|+
T Consensus 74 v~l~ 77 (78)
T cd05752 74 VHLE 77 (78)
T ss_pred EEEe
Confidence 4443
No 135
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.84 E-value=1.2e-08 Score=61.05 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=46.2
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce----------EEeceEEEEcchhhhHhh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ----------EDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~----------~~~~~l~i~~v~~~~~~~ 157 (163)
...+..|+.+.|.|.+.|+|+|.+.|++++.++....... .....|+|.++..+|++.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~ 79 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGL 79 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEE
Confidence 4557778999999999999999999999999976443221 124689999999999763
No 136
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.83 E-value=1.4e-08 Score=59.50 Aligned_cols=57 Identities=25% Similarity=0.467 Sum_probs=45.4
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce----EEeceEEEEcchhhhHh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ----EDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~----~~~~~l~i~~v~~~~~~ 156 (163)
...+.+|+.+.|.|.+.|.|.|.+.|++++..+....... .....|.|.++..+|.+
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g 69 (90)
T cd04972 9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQT 69 (90)
T ss_pred CEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCE
Confidence 4558899999999999999999999999998775443311 13457999999998864
No 137
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.83 E-value=9.3e-09 Score=58.34 Aligned_cols=51 Identities=27% Similarity=0.453 Sum_probs=40.6
Q ss_pred CCcEEEEeEeccCCCCeEEEEECCeEEEecCC---ceEEeceEEEEcchhhhHh
Q psy16425 106 GSNVTLKCAASGSPKPNITWRREGGELIAQGN---GQEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~---~~~~~~~l~i~~v~~~~~~ 156 (163)
|+++.|.|.+.|.|.|+++|++++.++..... ...+++.|.|.++..+|.+
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G 54 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSA 54 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCE
Confidence 67899999999999999999999988753321 1235568999999988865
No 138
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.83 E-value=1.3e-08 Score=59.48 Aligned_cols=59 Identities=27% Similarity=0.535 Sum_probs=49.9
Q ss_pred CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEcchhhhHhh
Q psy16425 99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~~ 157 (163)
....+.+|+++.|.|.+.+.|.|.+.|++++..+........ ....|.|.++..+|.+.
T Consensus 8 ~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 70 (90)
T PF07679_consen 8 KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGT 70 (90)
T ss_dssp SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEE
T ss_pred CCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEE
Confidence 467889999999999999999999999999998877555543 45789999999999763
No 139
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.82 E-value=6.7e-09 Score=58.80 Aligned_cols=51 Identities=25% Similarity=0.405 Sum_probs=42.0
Q ss_pred CCcEEEEeEeccCCCCeEEEEECCeEEEecCC---ceEEeceEEEEcchhhhHh
Q psy16425 106 GSNVTLKCAASGSPKPNITWRREGGELIAQGN---GQEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~---~~~~~~~l~i~~v~~~~~~ 156 (163)
|+++.|.|.+.|.|.|.+.|++++..+..... ....++.|.|.+++++|.+
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G 54 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTA 54 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCE
Confidence 67899999999999999999999988754432 2235688999999999875
No 140
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.82 E-value=1.2e-08 Score=56.80 Aligned_cols=46 Identities=28% Similarity=0.525 Sum_probs=36.6
Q ss_pred CCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcch
Q psy16425 106 GSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKK 151 (163)
Q Consensus 106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~ 151 (163)
|+++.|.|.+.|.|.|.+.|++++.++............|.|.++.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~ 46 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY 46 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc
Confidence 6789999999999999999999998875444333345678888874
No 141
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.79 E-value=5.9e-09 Score=58.36 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=40.5
Q ss_pred EEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425 109 VTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~ 157 (163)
+.|.|.+.|.|.|.+.|++++.++.........+..|.|.++..+|++.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~ 49 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGN 49 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEE
Confidence 4689999999999999999998876554434466889999999999763
No 142
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.78 E-value=3.3e-08 Score=58.28 Aligned_cols=62 Identities=23% Similarity=0.298 Sum_probs=42.2
Q ss_pred eeEEEee-eeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 4 RMLIEIG-EMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 4 ~~~~~~~-~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
.++|.|. ..+.|.+.+.|++ ++..... ..+.|..+.. .++.|.|.+|+.+|+|.|+|.+.+.
T Consensus 20 ~~~L~C~pP~g~P~p~~~W~k-~~~~~~~------~~d~r~~~~~---~~G~L~fs~v~~~D~g~Y~C~A~n~ 82 (96)
T cd05727 20 GVVLFCDPPPHYPDLSYRWLL-NEFPNFI------PEDGRRFVSQ---TNGNLYIAKVEASDRGNYSCFVSSP 82 (96)
T ss_pred cEEEeeCCCCCCCCCEEEEEE-CCccccc------ccCCCeEEeC---CCCcEEEeecCHhhCceeEEEEEec
Confidence 4677774 5777999999999 4433211 1122322332 1238999999999999999999765
No 143
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.78 E-value=7.8e-08 Score=55.16 Aligned_cols=56 Identities=7% Similarity=0.182 Sum_probs=40.6
Q ss_pred ceeEEEeeeeccCCC-EEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425 3 ARMLIEIGEMLMAES-TVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP 76 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~ 76 (163)
.++.+.|.+.+.|.| .|.|++ ++..+.. +... ....|.|.++ .|+|.|.|.+.|..
T Consensus 14 ~~v~l~C~a~G~P~P~~I~W~k-~g~~l~~----------~~~~-----~~s~L~i~~~--~d~g~Y~C~A~N~~ 70 (81)
T cd05749 14 TPFNLTCQAVGPPEPVEILWWQ-GGSPLGD----------PPAP-----SPSVLNVPGL--NETSKFSCEAHNAK 70 (81)
T ss_pred CCEEEEEEeeeecCCeEEEEEE-CCEECCC----------CCCC-----CCCEEEEccc--cCCeEEEEEEEecc
Confidence 368899999999999 799999 5554421 0111 1127888887 58899999998873
No 144
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.77 E-value=1.3e-08 Score=58.07 Aligned_cols=52 Identities=23% Similarity=0.451 Sum_probs=41.2
Q ss_pred CCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEcchhhhHhh
Q psy16425 106 GSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~~ 157 (163)
|+++.|.|.+.|.|.|.+.|++++..+....+... ..+.|+|.+++.+|.++
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 56 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGA 56 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEE
Confidence 67899999999999999999999887654433221 23689999999999763
No 145
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.77 E-value=4.2e-08 Score=67.06 Aligned_cols=61 Identities=18% Similarity=0.376 Sum_probs=43.3
Q ss_pred ceeEEEeeee-----ccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 3 ARMLIEIGEM-----LMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 3 ~~~~~~~~~~-----~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
.++.+.|.+. +.|.|.|+||| ++..+. ...++.+... +..|.|.+++.+|+|.|+|.+...
T Consensus 145 ~~v~L~C~~~~~~~~~~p~p~I~WyK-ng~~l~--------~~~r~~~~~~---~~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 145 KDSKLHCYGTDGISSTFKDYTLTWYK-NGNIVL--------YTDRIQLRNN---NSTLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred CCEEEEeeCCCCccccCCCceEEEEE-CCEECC--------CCCCEEEeCC---CCEEEECcCCHHhCEEEEEEEEEe
Confidence 3577788764 34679999999 666552 2234444432 227999999999999999999653
No 146
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.77 E-value=1.6e-08 Score=56.56 Aligned_cols=49 Identities=18% Similarity=0.399 Sum_probs=39.7
Q ss_pred cEEEEeEeccCCCCeEEEEECCeEEEecCCce-EEeceEEEEcchhhhHh
Q psy16425 108 NVTLKCAASGSPKPNITWRREGGELIAQGNGQ-EDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 108 ~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~ 156 (163)
++.|.|.+.|.|.|.++|++++..+....... ...+.|.|.+++.+|.+
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G 50 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEG 50 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCE
Confidence 47899999999999999999998876554433 24567889999988875
No 147
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.76 E-value=1.3e-07 Score=54.60 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=48.1
Q ss_pred cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEe
Q psy16425 2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQV 81 (163)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~ 81 (163)
..+++|.|...+. ...+.|++ ++..+ ..+.|+.....+ |.|..++++|+|.|.|.+.-.+-....
T Consensus 11 g~~v~L~C~~~s~-~A~v~W~~-ng~~l--------~~~~r~~~~~~G-----LlI~~~~~~dsG~Y~C~s~E~gf~~~~ 75 (85)
T cd05872 11 GADVVLPCQLRSN-LASPVWLF-NGTPL--------NAQFSYRVGTDG-----LLILVTSPEHSGTYRCYSEEEGFQQLV 75 (85)
T ss_pred CCCEEEECCCCCC-CccEEEEE-CCccc--------CCCcceEEeCCC-----CEEEECCHhhCEEEEEEEecCCCeEEE
Confidence 4578999988765 56999999 45544 233555555553 789999999999999998544433333
Q ss_pred EEEEE
Q psy16425 82 GYLEV 86 (163)
Q Consensus 82 ~~l~v 86 (163)
+.+.+
T Consensus 76 ~~y~l 80 (85)
T cd05872 76 ASYSL 80 (85)
T ss_pred EEEEE
Confidence 34433
No 148
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.76 E-value=2.2e-07 Score=56.93 Aligned_cols=75 Identities=16% Similarity=0.270 Sum_probs=48.7
Q ss_pred ceeEEEeeeecc----CCCEEEE-EEcCCc----eEEee-eeeEE-----ecCCeEEEEeCC-CceEEEEEcccCCCCCe
Q psy16425 3 ARMLIEIGEMLM----AESTVAW-LRVDTQ----TILTI-QTHVI-----TKNHRIGVTHSE-TKAWYLHIREVRESDRG 66 (163)
Q Consensus 3 ~~~~~~~~~~~~----~~~~i~W-~k~~~~----~~~~~-~~~~~-----~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G 66 (163)
.++.|.|...+. +...|.| |+..+. .+... .+..+ ...+|+.+.++. .++.+|.|.+++.+|+|
T Consensus 14 ~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~~sD~G 93 (116)
T cd05879 14 SDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLDYTDNG 93 (116)
T ss_pred CcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCCcccCE
Confidence 357777776553 4469999 432211 12222 22222 223588877655 47889999999999999
Q ss_pred EEEEEEEeCCC
Q psy16425 67 WYMCQVNTDPM 77 (163)
Q Consensus 67 ~Y~C~~~~~~~ 77 (163)
.|+|.+.+.+.
T Consensus 94 ~Y~C~v~n~p~ 104 (116)
T cd05879 94 TFTCDVKNPPD 104 (116)
T ss_pred EEEEEEEcCCC
Confidence 99999977643
No 149
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.76 E-value=1.1e-08 Score=56.50 Aligned_cols=45 Identities=13% Similarity=0.300 Sum_probs=37.5
Q ss_pred EEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425 109 VTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~ 157 (163)
++|.|.+.|+|.|.+.|+++|.++... ..++.|.|.++..+|++.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~----~~~~~L~i~~v~~~D~G~ 45 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK----HSQHSLQIKDVTEASAGT 45 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc----CCcCEEEECCCCHHHCEE
Confidence 478999999999999999999888522 245689999999999763
No 150
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.75 E-value=2.4e-08 Score=57.03 Aligned_cols=56 Identities=13% Similarity=0.225 Sum_probs=45.9
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~ 156 (163)
...+.+|+.+.|.|.+.+. .|.+.|+++|.++....+....+..|.|.++..+|++
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG 58 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSG 58 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCE
Confidence 4567899999999999986 5689999999887655444556678999999999875
No 151
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.74 E-value=1.8e-08 Score=58.28 Aligned_cols=56 Identities=18% Similarity=0.372 Sum_probs=44.0
Q ss_pred EEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce-----EEeceEEEEcchhhhHh
Q psy16425 101 MVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ-----EDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 101 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-----~~~~~l~i~~v~~~~~~ 156 (163)
+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....... .....|.|.++..+|++
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G 64 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 64 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCE
Confidence 457789999999999999999999999998875443321 13356889999888875
No 152
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.73 E-value=4.6e-08 Score=56.76 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=46.1
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEec-CCceEEeceEEEEcchhhhHhh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ-GNGQEDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~~~~~l~i~~v~~~~~~~ 157 (163)
...+..|+++.|.|.+.+ |.|.+.|++++.++... .+.....+.|.|.+|+.+|.+.
T Consensus 5 ~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~ 62 (87)
T cd05873 5 QRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGR 62 (87)
T ss_pred eEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEE
Confidence 567889999999999865 67899999999988655 2334566789999999999763
No 153
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.73 E-value=2.9e-08 Score=58.97 Aligned_cols=66 Identities=21% Similarity=0.335 Sum_probs=46.1
Q ss_pred CCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecC-----CceE----EeceEEEEcchhhhHh
Q psy16425 89 PPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQG-----NGQE----DFPFFKRTKKKKKKKK 156 (163)
Q Consensus 89 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~-----~~~~----~~~~l~i~~v~~~~~~ 156 (163)
.|.+...+. ...+..|+.+.|.|.+.|.|.|.++|++++..+.... +... ..+.|.|.+++.+|.+
T Consensus 2 ~p~i~~~~~--~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G 76 (97)
T cd05869 2 KPKITYVEN--QTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAG 76 (97)
T ss_pred CceEEEccC--ceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCE
Confidence 455555442 3345568999999999999999999999886653221 1111 2257999999999876
No 154
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.73 E-value=9.4e-08 Score=55.34 Aligned_cols=57 Identities=26% Similarity=0.281 Sum_probs=40.6
Q ss_pred ceeEEEeeeec-cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 3 ARMLIEIGEML-MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 3 ~~~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
.++.|.|...+ .|.+.|.|++.+. .+. .+.. . .+..|.|.+++.+|+|.|.|.+.|.
T Consensus 17 ~~v~L~C~~~~~~~~~~i~W~~~~~-~~~----------~~~~-~----~~~~L~I~~v~~~DsG~Y~C~a~n~ 74 (85)
T cd05754 17 ADVSFICRAKSKSPAYTLVWTRVGG-GLP----------SRAM-D----FNGILTIRNVQLSDAGTYVCTGSNM 74 (85)
T ss_pred CCEEEEEEcCCCCCCcEEEEEECCC-cCC----------Cccc-c----cCCEEEECCCCHHHCEEEEEEEecc
Confidence 46888898754 6889999999543 211 0110 1 1227999999999999999999665
No 155
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.72 E-value=4.1e-08 Score=57.78 Aligned_cols=59 Identities=17% Similarity=0.389 Sum_probs=46.4
Q ss_pred CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE-----EeceEEEEcchhhhHhh
Q psy16425 99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE-----DFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~v~~~~~~~ 157 (163)
....+.+|+.+.|.|.+.+.|.|.+.|++++..+........ ....|.|.++..+|.++
T Consensus 9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 72 (92)
T cd05891 9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGK 72 (92)
T ss_pred CcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEE
Confidence 367789999999999999999999999999987654433221 12369999999998763
No 156
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.72 E-value=6.1e-08 Score=56.14 Aligned_cols=57 Identities=23% Similarity=0.484 Sum_probs=45.7
Q ss_pred cEEEeCCCcEEEEeEe-ccCCCCeEEEEECCeEEEecCC-ce-EEeceEEEEcchhhhHh
Q psy16425 100 DMVIREGSNVTLKCAA-SGSPKPNITWRREGGELIAQGN-GQ-EDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~~~-~~-~~~~~l~i~~v~~~~~~ 156 (163)
...+.+|+++.|.|.+ .+.|.|.+.|++++..+..... .. ..++.|.|.+++.+|.+
T Consensus 5 ~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G 64 (86)
T cd05724 5 DTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEG 64 (86)
T ss_pred cEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCE
Confidence 5677899999999998 6899999999999988755322 22 24578999999999876
No 157
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.72 E-value=1.2e-07 Score=50.92 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=41.9
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
..+.|.|...+.+.+.+.|++ ++..+. ....... ....|.|.+++..|+|.|+|.+.+.
T Consensus 3 ~~~~l~C~~~~~~~~~v~W~~-~~~~~~----------~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~n~ 61 (63)
T smart00408 3 QSVTLTCPAEGDPVPNITWLK-DGKPLP----------ESNRLSA---SGSTLTIKSVSLEDSGEYTCVAENS 61 (63)
T ss_pred ceEEEEeeCccCCCCeEEEEE-CCEECC----------CCCEEec---CCcEEEEeeCCcccCEEEEEEEecC
Confidence 467888887888889999999 443331 1111111 1238999999999999999999653
No 158
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.70 E-value=5.9e-07 Score=54.49 Aligned_cols=74 Identities=23% Similarity=0.362 Sum_probs=51.0
Q ss_pred cceeEEEeeee-ccCCCEEEEEEcCCc----eEE-e-----eeeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425 2 AARMLIEIGEM-LMAESTVAWLRVDTQ----TIL-T-----IQTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM 69 (163)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~i~W~k~~~~----~~~-~-----~~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~ 69 (163)
..++.|.|... ......+.|++.... .+. . .........+|+.+.... ..+++|.|.+++.+|+|.|.
T Consensus 16 G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~ 95 (114)
T PF07686_consen 16 GESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDSGTYF 95 (114)
T ss_dssp TSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGEEEEE
T ss_pred CCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcCEEEE
Confidence 45788888888 567789999995431 111 0 111112335676666554 46889999999999999999
Q ss_pred EEEEeC
Q psy16425 70 CQVNTD 75 (163)
Q Consensus 70 C~~~~~ 75 (163)
|.+...
T Consensus 96 C~v~~~ 101 (114)
T PF07686_consen 96 CQVSTS 101 (114)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 999655
No 159
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.70 E-value=1.8e-07 Score=54.31 Aligned_cols=81 Identities=14% Similarity=0.179 Sum_probs=46.0
Q ss_pred ceeEEEeeeecc--CCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCce
Q psy16425 3 ARMLIEIGEMLM--AESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKS 79 (163)
Q Consensus 3 ~~~~~~~~~~~~--~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~ 79 (163)
..+.|.|...+. +...+.|...+........ ....+............|.|.+++.+|+|.|+|.+.+. +...
T Consensus 2 e~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~----~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~ 77 (86)
T cd05862 2 EKLVLNCTARTELNVGIDFQWDYPGKKEQRAKS----VSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAK 77 (86)
T ss_pred CcEEEEEEEEeCCCCcEEEEEEcCCccccccee----cccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEec
Confidence 356778877654 4568899875443211000 00001111111112348999999999999999999775 3344
Q ss_pred EeEEEEEE
Q psy16425 80 QVGYLEVV 87 (163)
Q Consensus 80 ~~~~l~v~ 87 (163)
....|.|+
T Consensus 78 ~~t~~~V~ 85 (86)
T cd05862 78 NSTIVIVH 85 (86)
T ss_pred ccEEEEEe
Confidence 44555553
No 160
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.70 E-value=1.8e-07 Score=55.58 Aligned_cols=53 Identities=15% Similarity=0.300 Sum_probs=33.5
Q ss_pred CCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 16 ESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 16 ~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
...|.|||.+ ........ ......|++.... .|.|.++..+|+|.|+|.+.|.
T Consensus 40 ~~~v~WyK~~-~~~~~~~~-~~~~~~Ri~~~~~-----~Lwf~Pa~~eDSG~Y~C~~rN~ 92 (104)
T cd05896 40 GLSLMWYKSS-GDGEEPIE-IIFDGVRMSKEED-----SIWFRPAELQDSGLYTCVLRNS 92 (104)
T ss_pred CceEEEEECC-CCCCCCCc-ccccceeEEEeCC-----EEEEEeCChhhCeEEEEEECCC
Confidence 3479999943 22111000 0001135555544 7999999999999999999665
No 161
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.69 E-value=5.5e-08 Score=57.91 Aligned_cols=57 Identities=26% Similarity=0.417 Sum_probs=42.6
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEEC--CeEEEec-----CCceE----EeceEEEEcchhhhHh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRRE--GGELIAQ-----GNGQE----DFPFFKRTKKKKKKKK 156 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~--~~~~~~~-----~~~~~----~~~~l~i~~v~~~~~~ 156 (163)
...+.+|+++.|.|.+.|.|.|.+.|+++ +..+... .+... ....|+|.+|+.+|.+
T Consensus 10 ~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G 77 (98)
T cd05870 10 NETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSG 77 (98)
T ss_pred cEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCE
Confidence 56788999999999999999999999984 3333211 11121 2357999999999876
No 162
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.69 E-value=3.9e-08 Score=55.59 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=37.7
Q ss_pred EEEEeEeccCCCCeEEEEECCeEEEec-CCceE---Eec--eEEEEcchhhhHhh
Q psy16425 109 VTLKCAASGSPKPNITWRREGGELIAQ-GNGQE---DFP--FFKRTKKKKKKKKK 157 (163)
Q Consensus 109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~---~~~--~l~i~~v~~~~~~~ 157 (163)
+.|.|.+.|.|.|.+.|++++..+... .+... +++ .|.|.++..+|.+.
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~ 55 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGW 55 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEE
Confidence 479999999999999999999887533 23222 122 79999999999763
No 163
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.69 E-value=7.4e-08 Score=55.24 Aligned_cols=50 Identities=22% Similarity=0.448 Sum_probs=39.7
Q ss_pred cEEEeCCCcEEEEeEeccCCCC-eEEEEECCeEEEecCCceEEeceEEEEcch
Q psy16425 100 DMVIREGSNVTLKCAASGSPKP-NITWRREGGELIAQGNGQEDFPFFKRTKKK 151 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~ 151 (163)
...+.+|+++.|.|.+.|+|.| +|.|++++.++... .....+.|+|..+.
T Consensus 7 ~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~~~~s~L~i~~~~ 57 (81)
T cd05749 7 DLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PAPSPSVLNVPGLN 57 (81)
T ss_pred ceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CCCCCCEEEEcccc
Confidence 5678899999999999999999 79999999887531 22344678887764
No 164
>smart00409 IG Immunoglobulin.
Probab=98.68 E-value=1.1e-06 Score=49.97 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=46.1
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
.++.+.|...+.+.+.+.|++.++..+. ...++....... ..+|.|.+++.+|+|.|.|.+.+.
T Consensus 10 ~~~~l~C~~~~~~~~~~~W~~~~~~~v~--------~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~ 73 (86)
T smart00409 10 ESVTLSCEVSGSPPPEVTWYKQGGKLLA--------ESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNS 73 (86)
T ss_pred CeEEEEEEEccCCCCeEEEEECCCEEcC--------CCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcC
Confidence 4688889888888999999994243331 233444443322 458999999999999999999644
No 165
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.68 E-value=1.1e-06 Score=49.97 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=46.1
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
.++.+.|...+.+.+.+.|++.++..+. ...++....... ..+|.|.+++.+|+|.|.|.+.+.
T Consensus 10 ~~~~l~C~~~~~~~~~~~W~~~~~~~v~--------~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~ 73 (86)
T smart00410 10 ESVTLSCEVSGSPPPEVTWYKQGGKLLA--------ESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNS 73 (86)
T ss_pred CeEEEEEEEccCCCCeEEEEECCCEEcC--------CCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcC
Confidence 4688889888888999999994243331 233444443322 458999999999999999999644
No 166
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.67 E-value=6.9e-08 Score=57.05 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=40.1
Q ss_pred CCCcEEEEeEeccCCCCeEEEEECCeEEEecCC--ceEEeceEEEEcch-hhhHh
Q psy16425 105 EGSNVTLKCAASGSPKPNITWRREGGELIAQGN--GQEDFPFFKRTKKK-KKKKK 156 (163)
Q Consensus 105 ~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~--~~~~~~~l~i~~v~-~~~~~ 156 (163)
+|+++.|.|.+.|.|.|.++|++++..+..... ....++.|.|.++. .+|.+
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G 72 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSG 72 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCE
Confidence 478999999999999999999999988753322 22355788888875 46764
No 167
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.67 E-value=6.7e-08 Score=56.96 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=39.6
Q ss_pred CCcEEEEeEeccCCCCeEEEEECCeEEEe-cCCceEEeceEEEEcch-hhhHh
Q psy16425 106 GSNVTLKCAASGSPKPNITWRREGGELIA-QGNGQEDFPFFKRTKKK-KKKKK 156 (163)
Q Consensus 106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~-~~~~~~~~~~l~i~~v~-~~~~~ 156 (163)
|+.+.|.|.+.|.|.|.++|++++..+.. ..+....++.|.|.++. .+|.+
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G 71 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAG 71 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCE
Confidence 45799999999999999999999988743 23333466889998875 46765
No 168
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.67 E-value=4.9e-08 Score=57.79 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=43.4
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecC-----Cce----EEeceEEEEcchhhhHh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQG-----NGQ----EDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~-----~~~----~~~~~l~i~~v~~~~~~ 156 (163)
...+.+|+++.|.|.+.|.|.|.+.|++++..+.... +.. .....|+|.+|+.+|.+
T Consensus 10 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 75 (96)
T cd05732 10 NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAG 75 (96)
T ss_pred ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCE
Confidence 4567889999999999999999999999885543221 111 12357999999998876
No 169
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.67 E-value=2.5e-08 Score=55.60 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=38.8
Q ss_pred EEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425 109 VTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~ 157 (163)
+.|.|.+.|+|.|.+.|++++.++..... ...+..|.|.++..+|++.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~-~~~~~~L~I~~v~~~D~G~ 48 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT-FKRGVHLTIYEVTEKDAGN 48 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCE-EccCCEEEECcCCHHHCEE
Confidence 36899999999999999999998854422 2345679999999999874
No 170
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.67 E-value=3.1e-07 Score=55.20 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=50.0
Q ss_pred ceeEEEeeeecc-CCCEEEEEEcCC--ce--EEeeeee----EEecCCeEEEEeCCC-ceEEEEEcccCCCCCeEEEEEE
Q psy16425 3 ARMLIEIGEMLM-AESTVAWLRVDT--QT--ILTIQTH----VITKNHRIGVTHSET-KAWYLHIREVRESDRGWYMCQV 72 (163)
Q Consensus 3 ~~~~~~~~~~~~-~~~~i~W~k~~~--~~--~~~~~~~----~~~~~~r~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~ 72 (163)
..+.|.|..... +...+.|++... .. +...... .....+|+.+..... +.++|.|.+++.+|+|.|.|.+
T Consensus 7 ~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v 86 (105)
T cd00099 7 ESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAV 86 (105)
T ss_pred CCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEEEEEE
Confidence 468888887765 778899999643 11 1111110 122356777665543 6789999999999999999999
Q ss_pred EeC
Q psy16425 73 NTD 75 (163)
Q Consensus 73 ~~~ 75 (163)
.+.
T Consensus 87 ~~~ 89 (105)
T cd00099 87 SLS 89 (105)
T ss_pred ecC
Confidence 654
No 171
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.66 E-value=2.6e-08 Score=55.35 Aligned_cols=48 Identities=27% Similarity=0.474 Sum_probs=38.0
Q ss_pred EEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425 109 VTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~ 156 (163)
+.|.|.+.|.|+|.+.|+++++.+.........++.|+|.+++.+|.+
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 48 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEG 48 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCE
Confidence 478999999999999999998766433222336678999999999875
No 172
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.66 E-value=9.6e-08 Score=56.29 Aligned_cols=61 Identities=20% Similarity=0.410 Sum_probs=39.0
Q ss_pred eeEEEeee---e--ccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 4 RMLIEIGE---M--LMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 4 ~~~~~~~~---~--~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
+..|.|.. . ..+.+.|.||| ++.++.. ...++..... ...|.|.+|..+|+|.|+|.+.+.
T Consensus 12 ~~~l~Cp~~~~f~~~~~~~~v~WYK-d~~~l~~-------~~~~~~~~~~---~~~L~I~~v~~~D~G~YtC~~~~~ 77 (95)
T cd05897 12 SGKLVCPDLSDFTINRTDVELQWYK-DSVLLDK-------DNEKFYSLKG---STYLHIIDVSLNDSGYYTCKLQFT 77 (95)
T ss_pred CcEEECCCHHHcccCCCCCcEEEcc-CCEECcC-------CCcceEecCC---CCEEEEEEcChhhCEEEEEEEEEe
Confidence 44555642 2 35667999999 6655421 1122222111 126999999999999999999765
No 173
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.66 E-value=4.5e-08 Score=56.12 Aligned_cols=55 Identities=31% Similarity=0.498 Sum_probs=43.4
Q ss_pred EEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceE--EeceEEEEcchhhhHh
Q psy16425 102 VIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQE--DFPFFKRTKKKKKKKK 156 (163)
Q Consensus 102 ~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~--~~~~l~i~~v~~~~~~ 156 (163)
....|+++.|.|.+.|.|.|.+.|++++..+........ ....|.|.+++.+|.+
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G 61 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSG 61 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCE
Confidence 456799999999999999999999999887644332222 3467999999999876
No 174
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.65 E-value=3.7e-07 Score=55.31 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=50.1
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCC--ceEE--eee-eeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDT--QTIL--TIQ-THVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~--~~~~--~~~-~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
.++.|.|.....+...+.||+... .+.. ... .......+|+.+.... .+.++|.|.+++.+|+|.|.|.+.+.
T Consensus 14 ~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~ 92 (109)
T cd04983 14 ENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSES 92 (109)
T ss_pred CCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 468888988777888999998532 1111 111 0011245677765443 46789999999999999999999543
No 175
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.65 E-value=4e-08 Score=55.86 Aligned_cols=48 Identities=23% Similarity=0.424 Sum_probs=37.7
Q ss_pred EEEEeEeccCCCCeEEEEECCeEEEecCCce---EEeceEEEEcchhhhHh
Q psy16425 109 VTLKCAASGSPKPNITWRREGGELIAQGNGQ---EDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~---~~~~~l~i~~v~~~~~~ 156 (163)
++|.|.+.|.|.|.+.|++++.++....... ...+.|.|.++..+|.+
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G 51 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSG 51 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCE
Confidence 4799999999999999999998875443221 13468999999998875
No 176
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.65 E-value=3e-08 Score=55.12 Aligned_cols=48 Identities=23% Similarity=0.506 Sum_probs=39.0
Q ss_pred EEEEeEeccCCCCeEEEEECCeEEEecCCceE-EeceEEEEcchhhhHh
Q psy16425 109 VTLKCAASGSPKPNITWRREGGELIAQGNGQE-DFPFFKRTKKKKKKKK 156 (163)
Q Consensus 109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~-~~~~l~i~~v~~~~~~ 156 (163)
+.|.|.+.|.|.|.+.|++++..+........ ..+.|.|.++..+|.+
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G 49 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQG 49 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCE
Confidence 47899999999999999999987755443332 4678999999999876
No 177
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.65 E-value=1.2e-07 Score=53.97 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=41.1
Q ss_pred cEEEeCCCcEEEEeEeccCCCC-eEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKP-NITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~ 157 (163)
...+.+|++++|.|.+.+.|.+ .+.|++|+..+. ..+..|+|.++ .+|++.
T Consensus 9 ~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~------~~~~~l~i~~~-~~dsG~ 60 (78)
T cd05752 9 WTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE------TTTNSYRIRAA-NNDSGE 60 (78)
T ss_pred CeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee------ccCCeEEEeec-ccCCEE
Confidence 4568899999999999998864 699999998763 23467899999 888753
No 178
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.63 E-value=2.9e-08 Score=55.53 Aligned_cols=48 Identities=21% Similarity=0.457 Sum_probs=37.9
Q ss_pred EEEEeEeccCCCCeEEEEECCeEEEecCCce-EEeceEEEEcchhhhHh
Q psy16425 109 VTLKCAASGSPKPNITWRREGGELIAQGNGQ-EDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~ 156 (163)
+.|.|.+.|.|.|.+.|++++..+....... ..++.|.|.+++.+|.+
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 49 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDG 49 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCE
Confidence 4689999999999999999988764432211 35578999999999876
No 179
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.63 E-value=1.6e-07 Score=54.15 Aligned_cols=55 Identities=18% Similarity=0.185 Sum_probs=39.3
Q ss_pred ceeEEEeeee-ccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 3 ARMLIEIGEM-LMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 3 ~~~~~~~~~~-~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
..+.|.|... +.+...+.||+ ++..+.. . ..+..|.|.+++.+|+|.|+|.+.+.
T Consensus 15 ~~vtL~C~~~~~~~~~~~~w~k-~g~~~~~--------~---------~~~~~l~I~~~~~~dsG~Y~C~~~~~ 70 (83)
T cd05753 15 EPLVLRCHGWKNKPVYKVTYYR-DGKAKKY--------S---------HSNSNLSIPQATLSDSGSYHCSGIIG 70 (83)
T ss_pred CCEEEEeeCCCCCcceEEEEEE-CCeEccc--------c---------CCCceEEECccCHHHCEEEEEEEEeC
Confidence 3578888874 45667899999 4443210 0 01237999999999999999999665
No 180
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.63 E-value=6.2e-08 Score=54.77 Aligned_cols=49 Identities=24% Similarity=0.390 Sum_probs=37.3
Q ss_pred EEEEeEeccCCCCeEEEEECCeEEEec-CCceE-Ee--c--eEEEEcchhhhHhh
Q psy16425 109 VTLKCAASGSPKPNITWRREGGELIAQ-GNGQE-DF--P--FFKRTKKKKKKKKK 157 (163)
Q Consensus 109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~-~~--~--~l~i~~v~~~~~~~ 157 (163)
+.|.|.+.|.|.|.+.|++++..+... .+... .. + .|.|.++..+|.+.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 55 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGW 55 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEE
Confidence 479999999999999999999887543 22222 11 1 68999999999763
No 181
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.61 E-value=5e-07 Score=54.92 Aligned_cols=71 Identities=13% Similarity=0.244 Sum_probs=46.9
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCC-ceEE---eeee-e-E---EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDT-QTIL---TIQT-H-V---ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN 73 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~-~~~~---~~~~-~-~---~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~ 73 (163)
..+.|.|.... +...|.|||... .... .... . . .....|+.........++|.|.+++++|+|.|.|.+.
T Consensus 14 ~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~ 92 (110)
T cd05899 14 QSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVYLCASS 92 (110)
T ss_pred CcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEEEEEEee
Confidence 46888888776 678899999642 1111 1110 0 0 0123566655544456799999999999999999985
Q ss_pred e
Q psy16425 74 T 74 (163)
Q Consensus 74 ~ 74 (163)
.
T Consensus 93 ~ 93 (110)
T cd05899 93 L 93 (110)
T ss_pred C
Confidence 4
No 182
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.61 E-value=4.8e-07 Score=51.55 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=43.3
Q ss_pred eEEEeeeeccCC--CEEEEEEcCC-ce---EEeee--eeEE---ecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEE
Q psy16425 5 MLIEIGEMLMAE--STVAWLRVDT-QT---ILTIQ--THVI---TKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQV 72 (163)
Q Consensus 5 ~~~~~~~~~~~~--~~i~W~k~~~-~~---~~~~~--~~~~---~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~ 72 (163)
+.|.|....... ..+.|++... .. +.... .... ...+|+.+.... .++++|.|.+++.+|+|.|.|.+
T Consensus 2 v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 2 VTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred EEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence 456665544443 3789998642 11 11111 1111 235678777664 57889999999999999999963
No 183
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.61 E-value=1.7e-07 Score=55.38 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=38.3
Q ss_pred CCcEEEEeEeccCCCCeEEEEECCeEEEecC--CceEEeceEEEEcch-hhhHh
Q psy16425 106 GSNVTLKCAASGSPKPNITWRREGGELIAQG--NGQEDFPFFKRTKKK-KKKKK 156 (163)
Q Consensus 106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~--~~~~~~~~l~i~~v~-~~~~~ 156 (163)
|+++.|.|.+.|+|.|.++|++++..+.... .....++.|.|.++. .+|.+
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G 72 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAG 72 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCE
Confidence 4689999999999999999999998875332 223356778887755 46654
No 184
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.60 E-value=6.9e-08 Score=54.36 Aligned_cols=50 Identities=26% Similarity=0.453 Sum_probs=39.5
Q ss_pred cEEEEeEeccCCCCeEEEEECCeEEEecCCceE----EeceEEEEcchhhhHhh
Q psy16425 108 NVTLKCAASGSPKPNITWRREGGELIAQGNGQE----DFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 108 ~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~~ 157 (163)
.+.|.|.+.|.|.|.+.|++++..+....+... ....|.|.++..+|++.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 54 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGK 54 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEE
Confidence 368999999999999999999988744433322 34689999999999763
No 185
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.60 E-value=8.8e-07 Score=50.87 Aligned_cols=65 Identities=12% Similarity=0.193 Sum_probs=39.1
Q ss_pred eEEEeeeec-cCCCEEEEEEcCCceEEeeee-eEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 5 MLIEIGEML-MAESTVAWLRVDTQTILTIQT-HVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 5 ~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
+.|.|...+ .|.+.|.|++ ++..+..... ......+..... ...|.|......|.|.|+|.+.+.
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~~~~~~y~C~a~n~ 68 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFR-DGEVLDGATYSKELLKDGKRETT-----VSTLPITPSDHDTGRTFTCRARNE 68 (82)
T ss_pred EEEEEEEeCccCCCEEEEEE-CCEEccCceeeeeEecCCCeEEE-----EEEEEEeCceecCCCEEEEEEcCc
Confidence 456777655 6888999999 5655432111 001111111111 126788888888999999999765
No 186
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.60 E-value=1.5e-07 Score=55.90 Aligned_cols=43 Identities=37% Similarity=0.879 Sum_probs=35.4
Q ss_pred CcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEe
Q psy16425 90 PDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGGELIA 134 (163)
Q Consensus 90 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~ 134 (163)
|.+...+ ....+.+|+++.|.|.+.|.|.|.+.|++++..+..
T Consensus 2 P~i~~~p--~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~ 44 (100)
T cd07693 2 PRIVEHP--SDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLET 44 (100)
T ss_pred CeEEecC--ceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECcc
Confidence 4444433 356788999999999999999999999999988755
No 187
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.58 E-value=6.9e-08 Score=54.44 Aligned_cols=49 Identities=27% Similarity=0.444 Sum_probs=37.7
Q ss_pred EEEEeEeccCCCCeEEEEECCeEEEe--cCCceE-EeceEEEEcchhhhHhh
Q psy16425 109 VTLKCAASGSPKPNITWRREGGELIA--QGNGQE-DFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 109 ~~l~C~~~~~p~p~v~W~~~~~~~~~--~~~~~~-~~~~l~i~~v~~~~~~~ 157 (163)
+.|.|.+.|.|.|.+.|++++.++.. ..+... .++.|.|.++..+|.+.
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~ 52 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGK 52 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEE
Confidence 47899999999999999999987752 222222 45679999999888763
No 188
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.58 E-value=1.1e-06 Score=54.02 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=46.1
Q ss_pred ceeEEEeeeeccC----CCEEEEEEcCC---c--eEEee-eee-----EEecCCeEEEEeCC-CceEEEEEcccCCCCCe
Q psy16425 3 ARMLIEIGEMLMA----ESTVAWLRVDT---Q--TILTI-QTH-----VITKNHRIGVTHSE-TKAWYLHIREVRESDRG 66 (163)
Q Consensus 3 ~~~~~~~~~~~~~----~~~i~W~k~~~---~--~~~~~-~~~-----~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G 66 (163)
.++.|.|...... ...|.|++... . .+... ... .....+|+.+.... .++++|.|.+++.+|+|
T Consensus 14 ~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G 93 (116)
T cd05715 14 SDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQFTDNG 93 (116)
T ss_pred CCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCCcccCE
Confidence 4678888664332 25699987432 1 11111 111 11223566655433 35689999999999999
Q ss_pred EEEEEEEeCCC
Q psy16425 67 WYMCQVNTDPM 77 (163)
Q Consensus 67 ~Y~C~~~~~~~ 77 (163)
.|.|.+.+.+.
T Consensus 94 ~Y~C~v~~~~~ 104 (116)
T cd05715 94 TYTCDVKNPPD 104 (116)
T ss_pred EEEEEEEeCCC
Confidence 99999976643
No 189
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.57 E-value=2.4e-06 Score=52.39 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=44.9
Q ss_pred ceeEEEeeeeccC----CCEEEEEEcC---Cc--eEEeeeeeE-E----ecCCeEEEEeC-CCceEEEEEcccCCCCCeE
Q psy16425 3 ARMLIEIGEMLMA----ESTVAWLRVD---TQ--TILTIQTHV-I----TKNHRIGVTHS-ETKAWYLHIREVRESDRGW 67 (163)
Q Consensus 3 ~~~~~~~~~~~~~----~~~i~W~k~~---~~--~~~~~~~~~-~----~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~ 67 (163)
..+.|.|.....+ ...|.|++.. +. .+....... . ...+|+.+... ..++++|.|.+++++|+|.
T Consensus 14 ~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~~~D~G~ 93 (115)
T cd05880 14 TDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQPTDNGT 93 (115)
T ss_pred CCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCChhhCEE
Confidence 3577888754332 3469998532 22 122221111 1 11245544432 2467899999999999999
Q ss_pred EEEEEEeCCC
Q psy16425 68 YMCQVNTDPM 77 (163)
Q Consensus 68 Y~C~~~~~~~ 77 (163)
|+|.+.+.+.
T Consensus 94 Y~C~v~~~~~ 103 (115)
T cd05880 94 YTCQVKNPPD 103 (115)
T ss_pred EEEEEEeCCC
Confidence 9999976643
No 190
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.57 E-value=2.2e-07 Score=55.06 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=43.1
Q ss_pred cEEEeCCCcEEEEeEeccCCC-CeEEEEE-CCeEEEecC-CceE-----EeceEEEEcchhhhHhh
Q psy16425 100 DMVIREGSNVTLKCAASGSPK-PNITWRR-EGGELIAQG-NGQE-----DFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~-p~v~W~~-~~~~~~~~~-~~~~-----~~~~l~i~~v~~~~~~~ 157 (163)
...+..|+++.|.|.+.|.|. |.+.|++ ++..+.... +... ..+.|+|.+++.+|.+.
T Consensus 9 ~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~ 74 (96)
T cd05865 9 QGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGI 74 (96)
T ss_pred ccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEE
Confidence 345778999999999999995 7999998 665554422 2211 13689999999999764
No 191
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.56 E-value=1.7e-06 Score=48.98 Aligned_cols=54 Identities=19% Similarity=0.327 Sum_probs=40.8
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP 76 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~ 76 (163)
..+.|.|...+.|.+.+.|++ ++..+... .. .|.|.++..+|+|.|+|.+.+..
T Consensus 15 ~~~~l~C~~~~~p~~~~~w~~-~~~~~~~~-------~~------------~~~~~~~~~~~~g~y~C~~~~~~ 68 (80)
T PF13895_consen 15 DSVTLTCSVSGNPPPQVQWYK-NGSPINSS-------QN------------GLFIPNVSPEDSGNYTCRASNGS 68 (80)
T ss_dssp SEEEEEEEEESSSSSEEEEEE-TTEEEEEE-------SS------------EEEESSEEGGGTEEEEEEEEETT
T ss_pred CcEEEEEEEEcccceeeeeee-eeeeeeee-------ee------------eeeeeeeccccCEEEEEEEEeCC
Confidence 468889988888889999999 55443210 00 26778899999999999997754
No 192
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.56 E-value=1.5e-06 Score=49.45 Aligned_cols=63 Identities=13% Similarity=0.243 Sum_probs=40.5
Q ss_pred eEEEee-eeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 5 MLIEIG-EMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 5 ~~~~~~-~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
+.|.|. ..+.|.+.|.||+ ++..+...... ......+... .+|.|......|.+.|+|++.|.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k-~~~~l~~~~~~-~~~~~~~t~~------s~L~~~~~~~Ddg~~~~C~A~n~ 65 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYR-DRKELKGVISQ-QENGKTVSVS------NTIRFPVDRKDDGAILSCEASHP 65 (80)
T ss_pred EEEEEeCCCccCCCeEEEEE-CCEECCCCccc-ccCCceEEEE------EEEEEEeeeccCCcEEEEEEECh
Confidence 345554 4678999999999 66655221100 0111222221 27999999999999999999776
No 193
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.56 E-value=2.8e-07 Score=51.86 Aligned_cols=51 Identities=25% Similarity=0.408 Sum_probs=38.4
Q ss_pred CCcEEEEeEeccCCCCeEEEEEC-CeEEEecCCce-EEeceEEEEcchhhhHh
Q psy16425 106 GSNVTLKCAASGSPKPNITWRRE-GGELIAQGNGQ-EDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 106 g~~~~l~C~~~~~p~p~v~W~~~-~~~~~~~~~~~-~~~~~l~i~~v~~~~~~ 156 (163)
|+.+.|.|.+.|.|.|.+.|+++ +..+....... ...+.|.|..++.+|.+
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G 53 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTG 53 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCE
Confidence 67899999999999999999975 44443222222 25578999999998876
No 194
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.54 E-value=1.1e-06 Score=52.29 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=46.2
Q ss_pred cceeEEEeeeecc--CCCEEEEEEcCC--ce--EEee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425 2 AARMLIEIGEMLM--AESTVAWLRVDT--QT--ILTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN 73 (163)
Q Consensus 2 ~~~~~~~~~~~~~--~~~~i~W~k~~~--~~--~~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~ 73 (163)
...+.|.|..... ....+.||++.. .+ +... .........|+...... ..++|.|.+++++|+|.|.|.+.
T Consensus 6 G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~-~~~~L~I~~~~~~Dsg~Y~C~~~ 83 (98)
T cd04984 6 GETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG-NTASLTISGAQTEDEADYYCQVW 83 (98)
T ss_pred CCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC-CEEEEEECCCChhhCEEEEEEEc
Confidence 3568888877654 556799998742 11 1111 11111123466665443 56789999999999999999984
No 195
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.54 E-value=1.5e-07 Score=53.15 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=36.6
Q ss_pred EEEEeEeccCCCCeEEEEECCeEEEec-CCceE--Ee---ceEEEEcchhhhHh
Q psy16425 109 VTLKCAASGSPKPNITWRREGGELIAQ-GNGQE--DF---PFFKRTKKKKKKKK 156 (163)
Q Consensus 109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~--~~---~~l~i~~v~~~~~~ 156 (163)
+.|.|.+.|.|.|.+.|++++..+... .+... .+ ..|.|.++..+|.+
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G 54 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAG 54 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCE
Confidence 479999999999999999999887533 22221 11 26999999999876
No 196
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.53 E-value=3e-07 Score=54.38 Aligned_cols=51 Identities=31% Similarity=0.504 Sum_probs=39.1
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCc---eEEeceEEEEcc
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNG---QEDFPFFKRTKK 150 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~---~~~~~~l~i~~v 150 (163)
...+.+|+++.|.|.+.|.|.|.+.|++++..+...... ...++.+.|.++
T Consensus 8 ~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v 61 (95)
T cd05722 8 DIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSV 61 (95)
T ss_pred CeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeee
Confidence 456778999999999999999999999999887544321 124456777766
No 197
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.52 E-value=2.4e-06 Score=55.76 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=56.2
Q ss_pred ceeEEEeeee-ccCCCEEEEEEcCCceEEee-eeeEEec--CCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCC-
Q psy16425 3 ARMLIEIGEM-LMAESTVAWLRVDTQTILTI-QTHVITK--NHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPM- 77 (163)
Q Consensus 3 ~~~~~~~~~~-~~~~~~i~W~k~~~~~~~~~-~~~~~~~--~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~- 77 (163)
.++.|.|... +...+.|.|+|.++..+... .+..+.. .+|+........+..|.|.+|+.+|+|.|.|.+...+.
T Consensus 31 e~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G 110 (189)
T PHA02987 31 VNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSK 110 (189)
T ss_pred CCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCCC
Confidence 3578888874 66788999999644332221 1122221 34666544444567999999999999999999976643
Q ss_pred --ceEeEEEEEEc
Q psy16425 78 --KSQVGYLEVVV 88 (163)
Q Consensus 78 --~~~~~~l~v~~ 88 (163)
.+...-|.|..
T Consensus 111 ~~~~gt~CLtVt~ 123 (189)
T PHA02987 111 NNEKGVVCLNVTT 123 (189)
T ss_pred CCceeEEEEEEEc
Confidence 34455566654
No 198
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.52 E-value=3.3e-07 Score=55.62 Aligned_cols=69 Identities=17% Similarity=0.292 Sum_probs=45.2
Q ss_pred cCCcccccCCCCcEEE--eCCCcEEEEeEeccCCCCeEEEEECCeEEEecC-Cce--------EEeceEEEEcch-hhhH
Q psy16425 88 VPPDILDYPTSTDMVI--REGSNVTLKCAASGSPKPNITWRREGGELIAQG-NGQ--------EDFPFFKRTKKK-KKKK 155 (163)
Q Consensus 88 ~~p~~~~~~~~~~~~~--~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~-~~~--------~~~~~l~i~~v~-~~~~ 155 (163)
.+|.+...+....... ..|..+.|.|.+.|.|.|.++|++++..+.... +.. ...+.|+|.+++ .+|.
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~ 82 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDY 82 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCC
Confidence 3555555443212212 246789999999999999999999998875322 111 123679999987 4676
Q ss_pred h
Q psy16425 156 K 156 (163)
Q Consensus 156 ~ 156 (163)
+
T Consensus 83 G 83 (109)
T cd05773 83 A 83 (109)
T ss_pred E
Confidence 5
No 199
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.52 E-value=1.3e-07 Score=52.66 Aligned_cols=48 Identities=29% Similarity=0.481 Sum_probs=37.3
Q ss_pred EEEEeEeccCCCCeEEEEECCeEEEecCCce-EEeceEEEEcchhhhHh
Q psy16425 109 VTLKCAASGSPKPNITWRREGGELIAQGNGQ-EDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~ 156 (163)
+.|.|.+.|.|.|.+.|++++..+....... ..+..|.|.+++.+|.+
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G 49 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDG 49 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCE
Confidence 4789999999999999999988764332111 24568999999999976
No 200
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.52 E-value=1.4e-07 Score=55.77 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=44.6
Q ss_pred cEEEeCCCcEEEEeEecc-----CCCCeEEEEECCeEEEec----CCceEEeceEEEEcchhhhHhh
Q psy16425 100 DMVIREGSNVTLKCAASG-----SPKPNITWRREGGELIAQ----GNGQEDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~-----~p~p~v~W~~~~~~~~~~----~~~~~~~~~l~i~~v~~~~~~~ 157 (163)
...+.+|+.+.|.|.+.+ .|.|.+.|++++..+... .+....++.|.|.++..+|++.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~ 74 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGL 74 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeE
Confidence 455778999999999998 688999999998764221 2222356789999999999863
No 201
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.49 E-value=1e-06 Score=52.39 Aligned_cols=55 Identities=15% Similarity=0.286 Sum_probs=41.9
Q ss_pred cEEEeCCCcEEEEeEeccCCCC-eEEEEECCeEEEecC--CceEE--------eceEEEEcchhhh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKP-NITWRREGGELIAQG--NGQED--------FPFFKRTKKKKKK 154 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~~~~--~~~~~--------~~~l~i~~v~~~~ 154 (163)
...+.+|+.+.|.|.+.|.|.| .+.|++++..+.... +.... ...|+|.++..+|
T Consensus 10 ~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d 75 (98)
T cd05758 10 TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESD 75 (98)
T ss_pred cEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccc
Confidence 5567899999999999999999 699999998775432 22211 1479999999844
No 202
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.48 E-value=8.3e-07 Score=52.15 Aligned_cols=57 Identities=14% Similarity=0.281 Sum_probs=43.4
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEEC-CeEEEecCCceE-Ee---ceEEEEcchhhhHhh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRRE-GGELIAQGNGQE-DF---PFFKRTKKKKKKKKK 157 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~-~~~~~~~~~~~~-~~---~~l~i~~v~~~~~~~ 157 (163)
...+.+|+++.|.|.+.|.|. .+.|+++ +.++....+... .+ ..|+|.++..+|.+.
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~ 70 (92)
T cd05866 9 KVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGI 70 (92)
T ss_pred ceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEE
Confidence 456788999999999999998 8999985 555544434332 22 389999999999863
No 203
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.46 E-value=5e-06 Score=49.35 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=48.1
Q ss_pred eeEEEeeeeccCCC-EEEEEEcCCceEEeeeeeEEecCCeEEEEeCC---CceEEEEEcccCCCC-CeEEEEEEEeC-CC
Q psy16425 4 RMLIEIGEMLMAES-TVAWLRVDTQTILTIQTHVITKNHRIGVTHSE---TKAWYLHIREVRESD-RGWYMCQVNTD-PM 77 (163)
Q Consensus 4 ~~~~~~~~~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~L~i~~v~~~d-~G~Y~C~~~~~-~~ 77 (163)
.+.|.|...+.|.| .|.|... +..+.. ...+|+.+.... .....|.|.++...| .|.|.|.+.|. +.
T Consensus 18 ~~~L~C~~~s~P~P~~i~W~w~-~~~i~~------~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~ 90 (98)
T cd05898 18 RGKVKCFIGSTPPPDRIAWAWK-ENVLES------GTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGS 90 (98)
T ss_pred cEEEEEEEccCCCCcEEEEEEc-cccccC------CCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCcc
Confidence 57888888677765 5688873 333321 123566655432 245689999998877 79999999776 44
Q ss_pred ceEeEEE
Q psy16425 78 KSQVGYL 84 (163)
Q Consensus 78 ~~~~~~l 84 (163)
....+.|
T Consensus 91 d~~~i~L 97 (98)
T cd05898 91 GTAIIQL 97 (98)
T ss_pred ceEEEEe
Confidence 4444443
No 204
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.46 E-value=2e-07 Score=54.56 Aligned_cols=51 Identities=25% Similarity=0.515 Sum_probs=38.7
Q ss_pred CCcEEEEeEeccCCCCeEEEEECCeEEEe--------cCCce-EEeceEEEEcchhhhHh
Q psy16425 106 GSNVTLKCAASGSPKPNITWRREGGELIA--------QGNGQ-EDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~--------~~~~~-~~~~~l~i~~v~~~~~~ 156 (163)
|+.+.|.|.+.|.|.|.+.|++++..+.. ..+.. ...+.|+|.+++.+|.+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G 60 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVG 60 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCE
Confidence 67899999999999999999998875421 11111 13467999999999875
No 205
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.46 E-value=2.8e-06 Score=52.08 Aligned_cols=73 Identities=14% Similarity=0.177 Sum_probs=48.2
Q ss_pred cceeEEEeeeec--cCCCEEEEEEcCC--ceE--Ee-eeeeE-----EecCCeEEEEeCCC-ceEEEEEcccCCCCCeEE
Q psy16425 2 AARMLIEIGEML--MAESTVAWLRVDT--QTI--LT-IQTHV-----ITKNHRIGVTHSET-KAWYLHIREVRESDRGWY 68 (163)
Q Consensus 2 ~~~~~~~~~~~~--~~~~~i~W~k~~~--~~~--~~-~~~~~-----~~~~~r~~~~~~~~-~~~~L~i~~v~~~d~G~Y 68 (163)
...+.|.|.... .+.+.+.||+... .+. .. ..... ....+|+....... ..++|.|.+++.+|+|.|
T Consensus 13 G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y 92 (116)
T cd04982 13 SKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKEDSATY 92 (116)
T ss_pred CCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHHCEEE
Confidence 346888888766 6778899999631 111 11 11000 01245777665543 578999999999999999
Q ss_pred EEEEEe
Q psy16425 69 MCQVNT 74 (163)
Q Consensus 69 ~C~~~~ 74 (163)
.|.+..
T Consensus 93 ~C~~~~ 98 (116)
T cd04982 93 YCAYWE 98 (116)
T ss_pred EEEEec
Confidence 999843
No 206
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.46 E-value=2.8e-07 Score=52.87 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=37.6
Q ss_pred EEEeEeccCCCCeEEEEECCeEEEecCCce-----------EEeceEEEEcchhhhHhh
Q psy16425 110 TLKCAASGSPKPNITWRREGGELIAQGNGQ-----------EDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 110 ~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-----------~~~~~l~i~~v~~~~~~~ 157 (163)
.+.|.+.|+|.|.++|+++|.++....... ...+.|+|.+++.+|.+.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 60 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGN 60 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeE
Confidence 368999999999999999999886554321 123479999999999874
No 207
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.46 E-value=1.6e-07 Score=52.97 Aligned_cols=48 Identities=27% Similarity=0.537 Sum_probs=35.7
Q ss_pred EEEEeEeccCCCCeEEEEECCeEEEec---CCce--EEeceEEEEcchhhhHh
Q psy16425 109 VTLKCAASGSPKPNITWRREGGELIAQ---GNGQ--EDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~---~~~~--~~~~~l~i~~v~~~~~~ 156 (163)
+.|.|.+.|.|.|.++|++++...... .+.. ..++.|.|.++..+|.+
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G 53 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTG 53 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCE
Confidence 478999999999999999998643221 1111 14568999999999876
No 208
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.46 E-value=2.5e-07 Score=52.67 Aligned_cols=47 Identities=19% Similarity=0.286 Sum_probs=37.2
Q ss_pred EEeEeccCCCCeEEEEECCeEEEecCCce---------EEeceEEEEcchhhhHhh
Q psy16425 111 LKCAASGSPKPNITWRREGGELIAQGNGQ---------EDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 111 l~C~~~~~p~p~v~W~~~~~~~~~~~~~~---------~~~~~l~i~~v~~~~~~~ 157 (163)
+.|.+.|+|.|.++|+++|.++....... ...+.|.|.+++.+|++.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 58 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGI 58 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEE
Confidence 67999999999999999999886554321 123579999999998864
No 209
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.45 E-value=5.5e-07 Score=52.52 Aligned_cols=51 Identities=12% Similarity=0.211 Sum_probs=39.2
Q ss_pred CCcEEEEeEeccCCCCeEEEEECCeEEEecC-CceE--------EeceEEEEcchhhhHh
Q psy16425 106 GSNVTLKCAASGSPKPNITWRREGGELIAQG-NGQE--------DFPFFKRTKKKKKKKK 156 (163)
Q Consensus 106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~-~~~~--------~~~~l~i~~v~~~~~~ 156 (163)
|+.+.|.|.+.|.|+|.+.|++++..+.... +... ....|.|.++..+|.+
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G 60 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSG 60 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCE
Confidence 6889999999999999999999998764432 1111 1157899999998876
No 210
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.44 E-value=3e-06 Score=50.22 Aligned_cols=78 Identities=13% Similarity=0.194 Sum_probs=47.6
Q ss_pred eeEEEeeeeccCCCE-EEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC-CCceEe
Q psy16425 4 RMLIEIGEMLMAEST-VAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD-PMKSQV 81 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~-i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 81 (163)
++.+.|...+.|.|. +.|.+ ++..+.....+...... .....-.+.|.|..++.+|+|.|+|.+.|. ...+..
T Consensus 20 ~~~L~V~ieAYP~p~~~~W~~-~~~~l~~~~~~~~~~~~----~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~t 94 (101)
T cd05860 20 NLDLIVEYEAYPKPEHQQWIY-MNRTLTNTSDHYVKSRN----ESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVT 94 (101)
T ss_pred CEEEEEEEEeCCCCeeeEEEc-CCcccCccccceeEEec----cCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEE
Confidence 567778888899998 99999 44433211111111000 000012348999999999999999999765 334444
Q ss_pred EEEEE
Q psy16425 82 GYLEV 86 (163)
Q Consensus 82 ~~l~v 86 (163)
+.|.|
T Consensus 95 F~l~v 99 (101)
T cd05860 95 FNVYV 99 (101)
T ss_pred EEEEE
Confidence 44544
No 211
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.44 E-value=2.7e-06 Score=50.50 Aligned_cols=75 Identities=17% Similarity=0.327 Sum_probs=48.2
Q ss_pred cceeEEEeeeec-cCCCEEEEEEcCCce---EEe-eeeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 2 AARMLIEIGEML-MAESTVAWLRVDTQT---ILT-IQTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~i~W~k~~~~~---~~~-~~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
...+.|.|.... .....+.|++..... ... .........+|+.+.... .+.++|.|.+++.+|+|.|.|.+...
T Consensus 7 G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 86 (98)
T cd05716 7 GGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDD 86 (98)
T ss_pred CCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccC
Confidence 346888887554 356778999864211 111 111112334677665333 46789999999999999999998544
Q ss_pred C
Q psy16425 76 P 76 (163)
Q Consensus 76 ~ 76 (163)
+
T Consensus 87 ~ 87 (98)
T cd05716 87 G 87 (98)
T ss_pred C
Confidence 3
No 212
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.42 E-value=9.8e-07 Score=51.96 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=45.9
Q ss_pred CcEEEeCCCcEEEEeE-eccCCCCeEEEEECCeEEEe-cCCceE-EeceEEEEcchhhhHh
Q psy16425 99 TDMVIREGSNVTLKCA-ASGSPKPNITWRREGGELIA-QGNGQE-DFPFFKRTKKKKKKKK 156 (163)
Q Consensus 99 ~~~~~~~g~~~~l~C~-~~~~p~p~v~W~~~~~~~~~-~~~~~~-~~~~l~i~~v~~~~~~ 156 (163)
....+.+|+.+.|.|. ..|.|.|.+.|+.++..... ..+... ..+.|.|.+|..+|.+
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g 71 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSH 71 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCC
Confidence 3577889999999997 58999999999987755333 333333 4589999999999987
No 213
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.41 E-value=2.5e-06 Score=52.65 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=46.4
Q ss_pred cceeEEEeeeeccC------CCEEEEEEcCCc----e-EEeeeee---EEecCCeEEEEeC-CCceEEEEEcccCCCCCe
Q psy16425 2 AARMLIEIGEMLMA------ESTVAWLRVDTQ----T-ILTIQTH---VITKNHRIGVTHS-ETKAWYLHIREVRESDRG 66 (163)
Q Consensus 2 ~~~~~~~~~~~~~~------~~~i~W~k~~~~----~-~~~~~~~---~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G 66 (163)
..++.|.|...... ...+.||+.... . +...... .....+|+.+..+ ..++++|.|.+++.+|+|
T Consensus 14 G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~~Dsg 93 (119)
T cd05712 14 GLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQPEDSG 93 (119)
T ss_pred cccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCChhhCe
Confidence 34688888654221 356899996422 1 2111111 0123457777643 456789999999999999
Q ss_pred EEEEEEEe
Q psy16425 67 WYMCQVNT 74 (163)
Q Consensus 67 ~Y~C~~~~ 74 (163)
.|.|.+..
T Consensus 94 ~Y~C~~~~ 101 (119)
T cd05712 94 KYFFRVEL 101 (119)
T ss_pred EEEEEEEc
Confidence 99999843
No 214
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.39 E-value=8.1e-07 Score=51.86 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=43.7
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecC----CceEEeceEEEEcchhhhHhh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQG----NGQEDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~----~~~~~~~~l~i~~v~~~~~~~ 157 (163)
...+.+|+++.|.|.+.+ |.+.+.|++++..+.... ........|.|.+++.+|.+.
T Consensus 5 ~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 65 (89)
T cd04979 5 VVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGV 65 (89)
T ss_pred EEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEE
Confidence 456788999999999977 888999999998765432 222344568999999998763
No 215
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.38 E-value=5.9e-07 Score=48.19 Aligned_cols=52 Identities=31% Similarity=0.498 Sum_probs=40.1
Q ss_pred CCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425 105 EGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 105 ~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~ 156 (163)
+|+++.|.|.+.+.|.+.+.|++++..+............|.|.+++.+|.+
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 52 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSG 52 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCE
Confidence 4889999999888999999999998876521112235568999999888764
No 216
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.38 E-value=9.1e-07 Score=51.78 Aligned_cols=52 Identities=15% Similarity=0.317 Sum_probs=36.7
Q ss_pred CCcEEEEeEeccCCCCeEEEEECC----eEEEecCCc-------------eEEeceEEEEcchhhhHhh
Q psy16425 106 GSNVTLKCAASGSPKPNITWRREG----GELIAQGNG-------------QEDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 106 g~~~~l~C~~~~~p~p~v~W~~~~----~~~~~~~~~-------------~~~~~~l~i~~v~~~~~~~ 157 (163)
|+.++|.|.+.|.|.|.|+|++++ ..+...... ......|.|.+|+.+|.+.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 69 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGE 69 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcE
Confidence 678999999999999999999863 222111100 0123579999999998763
No 217
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.38 E-value=1.8e-06 Score=50.57 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=39.1
Q ss_pred CCCcEEEEeEeccCCCCeEEEEECCeEEEec--CCceEEeceEEEEcchh-hhHh
Q psy16425 105 EGSNVTLKCAASGSPKPNITWRREGGELIAQ--GNGQEDFPFFKRTKKKK-KKKK 156 (163)
Q Consensus 105 ~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~--~~~~~~~~~l~i~~v~~-~~~~ 156 (163)
.|+.+.|.|.+.|+|.|.++|++++..+... ......++.|.|.++.+ +|.+
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G 72 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAG 72 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCE
Confidence 3467999999999999999999999877332 22234557888988775 6654
No 218
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.37 E-value=2.7e-06 Score=50.31 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=44.3
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEe--------cCCceE-----EeceEEEEcchhhhHhh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIA--------QGNGQE-----DFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~--------~~~~~~-----~~~~l~i~~v~~~~~~~ 157 (163)
...+.+|+++.|.|.+.+.|.|.+.|+++++.+.. ..+... ....|.|.+|..+|.+.
T Consensus 6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~ 76 (95)
T cd05882 6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGE 76 (95)
T ss_pred cEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEE
Confidence 56788999999999999999999999988764321 122111 24689999999999864
No 219
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.35 E-value=1.7e-06 Score=50.84 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=41.5
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEE-CCeEEEecCCceE-----EeceEEEEcchhhhHh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRR-EGGELIAQGNGQE-----DFPFFKRTKKKKKKKK 156 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~-~~~~~~~~~~~~~-----~~~~l~i~~v~~~~~~ 156 (163)
...+..|+++.|.|.+.|.| +.+.|++ ++..+....+... ....|+|.+++.+|++
T Consensus 9 ~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 70 (92)
T cd04977 9 QGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAG 70 (92)
T ss_pred cEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCE
Confidence 45688899999999999987 4999997 5555544222221 2257999999999976
No 220
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.34 E-value=3.1e-06 Score=51.04 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=44.5
Q ss_pred ceeEEEeeeeccC-CCEEEEEEcCC--ce--EEeeeee-EEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425 3 ARMLIEIGEMLMA-ESTVAWLRVDT--QT--ILTIQTH-VITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN 73 (163)
Q Consensus 3 ~~~~~~~~~~~~~-~~~i~W~k~~~--~~--~~~~~~~-~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~ 73 (163)
.++.|.|...... ...+.||+... .+ +...... ......|+.... ....++|.|.+++++|+|.|.|.+.
T Consensus 16 ~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~~~~~Dsg~Y~Ca~~ 91 (106)
T cd04980 16 ESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG-SGTDFTLTISRVEPEDAAVYYCQQY 91 (106)
T ss_pred CCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec-cCCEEEEEECCCChHHCEEEEEEEe
Confidence 4688889875554 57799998641 11 1111110 111234565543 2356789999999999999999984
No 221
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.33 E-value=1.9e-06 Score=50.39 Aligned_cols=52 Identities=17% Similarity=0.372 Sum_probs=36.8
Q ss_pred CCcEEEEeEeccCCCCeEEEEEC----CeEEEecCCce-------------EEeceEEEEcchhhhHhh
Q psy16425 106 GSNVTLKCAASGSPKPNITWRRE----GGELIAQGNGQ-------------EDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 106 g~~~~l~C~~~~~p~p~v~W~~~----~~~~~~~~~~~-------------~~~~~l~i~~v~~~~~~~ 157 (163)
|+++.|.|.+.|.|.|.+.|+++ +..+....... .....|.|.+|+.+|.+.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 69 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGE 69 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEE
Confidence 67899999999999999999984 33222111100 012579999999999763
No 222
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.33 E-value=6.6e-07 Score=50.80 Aligned_cols=44 Identities=23% Similarity=0.489 Sum_probs=32.8
Q ss_pred EEEEeEeccCCCCeEEEEECCeEEEecC--Cce--EEeceEEEEcchh
Q psy16425 109 VTLKCAASGSPKPNITWRREGGELIAQG--NGQ--EDFPFFKRTKKKK 152 (163)
Q Consensus 109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~--~~~--~~~~~l~i~~v~~ 152 (163)
+.|.|.+.|.|.|.++|++++..+.... ... ...+.|.|..++.
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~ 48 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNG 48 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCC
Confidence 4789999999999999999998774332 112 2457888888753
No 223
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.33 E-value=9.7e-07 Score=50.11 Aligned_cols=45 Identities=18% Similarity=0.429 Sum_probs=33.3
Q ss_pred EEEEeEeccCCCCeEEEEECCeEEEecCC--ceE--EeceEEEEcchhh
Q psy16425 109 VTLKCAASGSPKPNITWRREGGELIAQGN--GQE--DFPFFKRTKKKKK 153 (163)
Q Consensus 109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~--~~~--~~~~l~i~~v~~~ 153 (163)
+.|.|.+.|.|.|.++|++++.++..... ... .++.|.|..+..+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~ 49 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGE 49 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccC
Confidence 47899999999999999999987633222 111 4578888877654
No 224
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.32 E-value=2e-06 Score=49.73 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=38.8
Q ss_pred CcEEEEeEeccCCCC--eEEEEECCeEEEecCC--------ceEEeceEEEEcchhhhHhh
Q psy16425 107 SNVTLKCAASGSPKP--NITWRREGGELIAQGN--------GQEDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 107 ~~~~l~C~~~~~p~p--~v~W~~~~~~~~~~~~--------~~~~~~~l~i~~v~~~~~~~ 157 (163)
+++.|.|.+.|.|.| .+.|++++..+..... .....+.|.|.+++.+|++.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 61 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGK 61 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCee
Confidence 468999999999987 5799999988754321 01245789999999999864
No 225
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.32 E-value=6.8e-07 Score=50.52 Aligned_cols=48 Identities=21% Similarity=0.447 Sum_probs=37.1
Q ss_pred EEEEeEeccCCCCeEEEEECCeEEEecCCce----EEeceEEEEcchhhhHh
Q psy16425 109 VTLKCAASGSPKPNITWRREGGELIAQGNGQ----EDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~----~~~~~l~i~~v~~~~~~ 156 (163)
+.|.|.+.|.|.|.+.|++++..+....... ..+..|.|.++..+|.+
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G 52 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTG 52 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCE
Confidence 3689999999999999999998875443221 13457999999998876
No 226
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.32 E-value=5.8e-06 Score=50.70 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=47.3
Q ss_pred ceeEEEeeeecc-CCCEEEEEEcCC-ce-EE-ee--eeeEEecCCeEEEEeC-CCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425 3 ARMLIEIGEMLM-AESTVAWLRVDT-QT-IL-TI--QTHVITKNHRIGVTHS-ETKAWYLHIREVRESDRGWYMCQVNT 74 (163)
Q Consensus 3 ~~~~~~~~~~~~-~~~~i~W~k~~~-~~-~~-~~--~~~~~~~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~ 74 (163)
.++.|.|..... ....+.||+... .. .. .. ........+|+..... ..++++|.|.+++.+|+|.|.|.+..
T Consensus 15 ~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 15 EEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFCALST 93 (116)
T ss_pred CCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence 468888876543 567799998632 11 11 11 1111123467777643 34678999999999999999999954
No 227
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.32 E-value=6.9e-07 Score=50.27 Aligned_cols=49 Identities=22% Similarity=0.405 Sum_probs=37.8
Q ss_pred EEEEeEecc-CCCCeEEEEECCeEEEecCCce-------EEeceEEEEcchhhhHhh
Q psy16425 109 VTLKCAASG-SPKPNITWRREGGELIAQGNGQ-------EDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 109 ~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~~~-------~~~~~l~i~~v~~~~~~~ 157 (163)
+.|.|.+.| .|.|.+.|++++.++....... .....|.|.++..+|.+.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 57 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGE 57 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeE
Confidence 468999999 9999999999998875543321 134679999999998763
No 228
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.31 E-value=2.3e-06 Score=49.55 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=38.3
Q ss_pred CcEEEEeEeccCCCC--eEEEEECCeEEEecC---Cc---e--EEeceEEEEcchhhhHhh
Q psy16425 107 SNVTLKCAASGSPKP--NITWRREGGELIAQG---NG---Q--EDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 107 ~~~~l~C~~~~~p~p--~v~W~~~~~~~~~~~---~~---~--~~~~~l~i~~v~~~~~~~ 157 (163)
+.+.|.|.+.|.|.| .+.|++++..+.... .. . ...+.|+|.+++.+|++.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 61 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGT 61 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeE
Confidence 468999999999987 589999998774322 11 1 134689999999999763
No 229
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.29 E-value=1e-06 Score=51.79 Aligned_cols=58 Identities=7% Similarity=0.106 Sum_probs=45.6
Q ss_pred cEEEeCCCcEEEEeEecc-----CCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHhh
Q psy16425 100 DMVIREGSNVTLKCAASG-----SPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~-----~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~ 157 (163)
.+.+.+|.+..|.|...+ +|.|.+.|++++.++.........++.|.|.+|+.+|++.
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~ 66 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGN 66 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEE
Confidence 456778999999998753 2678999999999876554433367899999999999874
No 230
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.28 E-value=1e-05 Score=48.62 Aligned_cols=71 Identities=13% Similarity=0.372 Sum_probs=45.3
Q ss_pred cceeEEEeeeeccCCCEEEEEEcCCc----e--EEeee---eeEE----ecCCeEEEEeCCCceEEEEEcccCCCCCeEE
Q psy16425 2 AARMLIEIGEMLMAESTVAWLRVDTQ----T--ILTIQ---THVI----TKNHRIGVTHSETKAWYLHIREVRESDRGWY 68 (163)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~W~k~~~~----~--~~~~~---~~~~----~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y 68 (163)
..++.|.|.........+.||+.... + +.... .... ....|+...... ..++|.|.+++.+|+|.|
T Consensus 6 G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~-~~~~L~I~~~~~sDsgtY 84 (104)
T cd05720 6 GQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSS-NSFVLTLKNFQKENEGYY 84 (104)
T ss_pred CCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecC-CEEEEEECCCCHHHCEEE
Confidence 34788888765555567999997522 1 11111 1111 113456554433 677899999999999999
Q ss_pred EEEEE
Q psy16425 69 MCQVN 73 (163)
Q Consensus 69 ~C~~~ 73 (163)
.|.+.
T Consensus 85 ~Ca~~ 89 (104)
T cd05720 85 FCSVA 89 (104)
T ss_pred EEEEc
Confidence 99874
No 231
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.28 E-value=4.3e-06 Score=46.61 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=37.7
Q ss_pred eEEEeeeeccC-CCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425 5 MLIEIGEMLMA-ESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT 74 (163)
Q Consensus 5 ~~~~~~~~~~~-~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~ 74 (163)
+.|.|...+.+ .+.+.|+. ...... . ....... ....|.|.++..+|.|.|+|.+.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~~-~~~~~~-~-------~~~~~~~----~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWYD-SNPSFN-S-------NSRGSSS----SNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEET-EEEEEE-E-------EEEEEEE----EEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEEe-cCCcee-e-------eeeeccc----eeeEEEEccCCHHhCcEEEEEEEC
Confidence 77888888887 89999991 111100 0 0001111 123899999999999999999864
No 232
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.27 E-value=5.1e-06 Score=47.71 Aligned_cols=56 Identities=27% Similarity=0.424 Sum_probs=42.0
Q ss_pred EEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCce-----EEeceEEEEcchhhhHh
Q psy16425 101 MVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQ-----EDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 101 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-----~~~~~l~i~~v~~~~~~ 156 (163)
..+..|+.+.|.|.+.+.|.|.+.|++++..+....... .....|.|.++..+|.+
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g 64 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSG 64 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCE
Confidence 345679999999999999999999999988765332221 12246888899888765
No 233
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.26 E-value=2.7e-06 Score=50.31 Aligned_cols=58 Identities=9% Similarity=0.215 Sum_probs=41.9
Q ss_pred CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEE--------ecCCceE-----EeceEEEEcchhhhHh
Q psy16425 99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELI--------AQGNGQE-----DFPFFKRTKKKKKKKK 156 (163)
Q Consensus 99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~--------~~~~~~~-----~~~~l~i~~v~~~~~~ 156 (163)
....+.+|+++.|.|.+.+.|.|.+.|++.++.+. ...+... ....|+|.++..+|.+
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG 75 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEG 75 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCE
Confidence 36778999999999999999999999986433221 1112211 2357899999999875
No 234
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.25 E-value=3.6e-06 Score=48.61 Aligned_cols=55 Identities=22% Similarity=0.409 Sum_probs=42.9
Q ss_pred cEEEeCCCcEEEEeEecc-CCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425 100 DMVIREGSNVTLKCAASG-SPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~ 156 (163)
...+.+|++++|.|.+.+ .|.|.+.|++++..+... ....++.|.|.+++.+|.+
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~~~~~~~L~I~~v~~~DsG 65 (85)
T cd05754 10 SQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--AMDFNGILTIRNVQLSDAG 65 (85)
T ss_pred ceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--ccccCCEEEECCCCHHHCE
Confidence 556788999999999974 788899999988664221 2234578999999999875
No 235
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.25 E-value=3.5e-06 Score=49.69 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=43.8
Q ss_pred cEEEeCCCcEEEEeEe-ccCCCCeEEEEECCeEEEe--cCCce-E-EeceEEEEcchhhhHh
Q psy16425 100 DMVIREGSNVTLKCAA-SGSPKPNITWRREGGELIA--QGNGQ-E-DFPFFKRTKKKKKKKK 156 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~--~~~~~-~-~~~~l~i~~v~~~~~~ 156 (163)
...+.+|+.+.|.|.. .|.|.|.+.|++++.++.. +.+.. . ..+.|.|.+|+++|.+
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g 73 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRG 73 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCc
Confidence 4568889999999976 5899999999999875421 22222 2 3589999999999975
No 236
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.23 E-value=1.1e-06 Score=47.77 Aligned_cols=51 Identities=25% Similarity=0.494 Sum_probs=37.7
Q ss_pred CCcEEEEeEe-ccCCCCeEEEEECCeEEEecCCceE------EeceEEEEcchhhhHh
Q psy16425 106 GSNVTLKCAA-SGSPKPNITWRREGGELIAQGNGQE------DFPFFKRTKKKKKKKK 156 (163)
Q Consensus 106 g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~~~~~~------~~~~l~i~~v~~~~~~ 156 (163)
|+++.|.|.+ .+.+.+.+.|++++........... ....|+|.+++++|++
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G 58 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSG 58 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCE
Confidence 7889999999 6778889999999876433322221 1113999999999976
No 237
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.21 E-value=1.6e-05 Score=46.55 Aligned_cols=60 Identities=10% Similarity=0.161 Sum_probs=40.2
Q ss_pred cceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 2 AARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
...|.|.|... .+...+.|++ ++...... + .........|.|.+|+.+|+|.|+|+..+.
T Consensus 16 G~~VtL~C~~~-~~~~~f~l~k-~g~~~~~~---------~---~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 16 GKPVTLRCQGP-YGAVEYRLYR-EGSTFAVK---------K---PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCcEEEEEecC-CCCCEEEEEE-CCCCcccc---------c---cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 34688888775 7777889999 44332110 0 001112347999999999999999999654
No 238
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.20 E-value=3.6e-06 Score=47.74 Aligned_cols=43 Identities=19% Similarity=0.358 Sum_probs=31.7
Q ss_pred EEEEeEeccCCCCeEEEEECCeEEEec--CCce--EEeceEEEEcch
Q psy16425 109 VTLKCAASGSPKPNITWRREGGELIAQ--GNGQ--EDFPFFKRTKKK 151 (163)
Q Consensus 109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~--~~~~--~~~~~l~i~~v~ 151 (163)
+.|.|.+.|+|.|.++|++++..+... .... ..++.|.|..+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~ 47 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSG 47 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccC
Confidence 468999999999999999999875322 2222 245788888764
No 239
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.17 E-value=4.3e-06 Score=47.68 Aligned_cols=51 Identities=20% Similarity=0.449 Sum_probs=36.6
Q ss_pred CCcEEEEeEeccCCCCeEEEEECCe---EEEe-cCC----c-eEEeceEEEEcchhhhHh
Q psy16425 106 GSNVTLKCAASGSPKPNITWRREGG---ELIA-QGN----G-QEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 106 g~~~~l~C~~~~~p~p~v~W~~~~~---~~~~-~~~----~-~~~~~~l~i~~v~~~~~~ 156 (163)
|+++.|.|.+.|.|.|.+.|++++. .+.. ... . ....+.|.|.++..+|.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G 60 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAG 60 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCE
Confidence 6789999999999999999999732 1111 111 0 113467999999999875
No 240
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.15 E-value=1.7e-06 Score=49.29 Aligned_cols=48 Identities=27% Similarity=0.407 Sum_probs=34.7
Q ss_pred EEEEeEeccCCCCeEEEEECCeEEEe--------cCCce-EEeceEEEEcchhhhHh
Q psy16425 109 VTLKCAASGSPKPNITWRREGGELIA--------QGNGQ-EDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 109 ~~l~C~~~~~p~p~v~W~~~~~~~~~--------~~~~~-~~~~~l~i~~v~~~~~~ 156 (163)
+.|.|.+.|+|.|.+.|++++..... ..+.. ...+.|.|.++..+|.+
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G 57 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSG 57 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCE
Confidence 47999999999999999997543211 11111 24578999999988876
No 241
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.13 E-value=6.7e-06 Score=47.49 Aligned_cols=51 Identities=20% Similarity=0.148 Sum_probs=38.2
Q ss_pred CcEEEEeEecc--CCCCeEEEEECCeEEEecC---CceE-----EeceEEEEcchhhhHhh
Q psy16425 107 SNVTLKCAASG--SPKPNITWRREGGELIAQG---NGQE-----DFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 107 ~~~~l~C~~~~--~p~p~v~W~~~~~~~~~~~---~~~~-----~~~~l~i~~v~~~~~~~ 157 (163)
+++.|.|.+.+ .+.+.+.|++||.++.... .... .++.|.|.+++.+|++.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~ 61 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGK 61 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEE
Confidence 46899999976 4577899999999986321 1112 34689999999999863
No 242
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.12 E-value=8.5e-05 Score=42.49 Aligned_cols=77 Identities=18% Similarity=0.218 Sum_probs=42.3
Q ss_pred eEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC--CceEe
Q psy16425 5 MLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP--MKSQV 81 (163)
Q Consensus 5 ~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~--~~~~~ 81 (163)
+.|.|.. .+-|.+.|.||+ ++..+............++.. ..+|.|..-...|...|+|++.+.. .....
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k-~~~~l~~~~~~~~~~~~~~t~------~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~ 74 (82)
T cd05883 2 IELNCTAMASKPAATIRWFK-GNKELTGKSTVEETWSRMFTV------TSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQ 74 (82)
T ss_pred EEEEEEecCCCCCCEEEEEE-CCEECcCcccceeccCCCcEE------EEEEEEECchhhCCCEEEEEEcCcccCCceee
Confidence 4455554 456889999999 555542111100011111222 2278887777777788999996652 22333
Q ss_pred EEEEEEc
Q psy16425 82 GYLEVVV 88 (163)
Q Consensus 82 ~~l~v~~ 88 (163)
..|.|++
T Consensus 75 ~~L~V~y 81 (82)
T cd05883 75 RYLEVQY 81 (82)
T ss_pred EEEEEEE
Confidence 4555543
No 243
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.11 E-value=9.9e-06 Score=46.63 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=41.2
Q ss_pred cEEEeCCCcEEEEeEec-cCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425 100 DMVIREGSNVTLKCAAS-GSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~ 156 (163)
...+.+|++++|.|.+. +.+.+.+.|++++..+.. ...+..|.|.+++.+|++
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~----~~~~~~l~I~~~~~~dsG 61 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY----SHSNSNLSIPQATLSDSG 61 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc----cCCCceEEECccCHHHCE
Confidence 34678899999999986 456778999999976642 123467999999999876
No 244
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.11 E-value=4.1e-06 Score=48.29 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=37.5
Q ss_pred CCcEEEEeEeccC--CCCeEEEEECCeEEEecC---------CceEEeceEEEEcchhhhHh
Q psy16425 106 GSNVTLKCAASGS--PKPNITWRREGGELIAQG---------NGQEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 106 g~~~~l~C~~~~~--p~p~v~W~~~~~~~~~~~---------~~~~~~~~l~i~~v~~~~~~ 156 (163)
|+.+.|.|.+.+. |.|.+.|..++..+.... ........|+|.+++.+|.+
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG 62 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSG 62 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCE
Confidence 6889999999998 888999998775432110 01124568999999999875
No 245
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.11 E-value=5e-05 Score=45.87 Aligned_cols=71 Identities=15% Similarity=0.320 Sum_probs=43.6
Q ss_pred ceeEEEeeeecc-CCCEEEEEEcCCc----eEE----eee-e-eEEe---cCCeEEEEeC-CCceEEEEEcccCCCCCeE
Q psy16425 3 ARMLIEIGEMLM-AESTVAWLRVDTQ----TIL----TIQ-T-HVIT---KNHRIGVTHS-ETKAWYLHIREVRESDRGW 67 (163)
Q Consensus 3 ~~~~~~~~~~~~-~~~~i~W~k~~~~----~~~----~~~-~-~~~~---~~~r~~~~~~-~~~~~~L~i~~v~~~d~G~ 67 (163)
..+.|.|..... ....+.||++... .+. ... . .... ...|+..... ....+.|.|.+++++|+|.
T Consensus 7 ~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~ 86 (107)
T cd07700 7 NTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPEDSGT 86 (107)
T ss_pred CCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHHHCEE
Confidence 467888876543 3457999997532 111 110 0 1111 1345654332 2346789999999999999
Q ss_pred EEEEEE
Q psy16425 68 YMCQVN 73 (163)
Q Consensus 68 Y~C~~~ 73 (163)
|.|...
T Consensus 87 YyCa~~ 92 (107)
T cd07700 87 YFCMTV 92 (107)
T ss_pred EEEeEc
Confidence 999974
No 246
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.10 E-value=0.00013 Score=41.88 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=36.0
Q ss_pred eEEEeeeec-cCCCEEEEEEcCCceEEeeeeeEE-ecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 5 MLIEIGEML-MAESTVAWLRVDTQTILTIQTHVI-TKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 5 ~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
+.|.|...+ .|.+.|.|++ ++..+........ ...+.+.... .|.+......+.+.|+|.+.+.
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~-~~~~l~~~~~~~~~~~~~~~~~~s------~l~~~~~~~d~g~~~~C~v~h~ 67 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFK-GDKELKGVKLKEEDENGKTFTVTS------SLRFQVDREDDGAPIICRVDHP 67 (82)
T ss_pred EEEEEEecCcCcCCeEEEEE-CCEEccCceeeEecCCCCEEEEEE------EEEEEcchhhCCCEEEEEEeCh
Confidence 456666544 4788999999 5555421110111 1122222221 5666655566678999999665
No 247
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.02 E-value=1.2e-05 Score=46.39 Aligned_cols=51 Identities=12% Similarity=0.236 Sum_probs=37.4
Q ss_pred CCcEEEEeEeccCCCCeEEEEECCeEEEecC--------CceEEeceEEEEcchhhhHh
Q psy16425 106 GSNVTLKCAASGSPKPNITWRREGGELIAQG--------NGQEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~--------~~~~~~~~l~i~~v~~~~~~ 156 (163)
|+++.|.|.+.+.|.+.+.|+.+++...... ........|.|.+++.+|++
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG 59 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSG 59 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCE
Confidence 7889999999999999999998765321100 11123568999999999875
No 248
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.01 E-value=3.6e-05 Score=43.43 Aligned_cols=50 Identities=26% Similarity=0.541 Sum_probs=38.4
Q ss_pred EEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425 101 MVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 101 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~ 156 (163)
..+.+|+++.|.|.+.+.|.+.+.|++++..+..... .+.+.+++.+|++
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~------~~~~~~~~~~~~g 58 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN------GLFIPNVSPEDSG 58 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS------EEEESSEEGGGTE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee------eeeeeeeccccCE
Confidence 3578899999999999999999999999877763322 1566677766654
No 249
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.00 E-value=0.00012 Score=42.05 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=36.8
Q ss_pred eEEEeeeec-cCCCEEEEEEcCCceEEeeeeeEE-ecC-CeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425 5 MLIEIGEML-MAESTVAWLRVDTQTILTIQTHVI-TKN-HRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP 76 (163)
Q Consensus 5 ~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~~~~-~~~-~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~ 76 (163)
+.|.|.+.+ .|.+.|.|++ ++..+........ ..+ +.+... ..|.|......|...|+|.+.+..
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k-~g~~l~~~~~~~~~~~~~~t~~~~------s~l~~~~~~~d~g~~~tC~v~h~~ 69 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRK-GDQELEGAPTSVLEDGNGKTFTVS------SSVEFQVTREDDGAEITCSVGHES 69 (83)
T ss_pred EEEEEEecCccCCCEeEEEE-CCEECCCcceeEEECCCCCEEEEE------EEEEEEecchhCCCEEEEEEECcc
Confidence 345555544 4778999999 5554321111111 112 122222 256676667778899999996653
No 250
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=97.99 E-value=2.7e-05 Score=45.61 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=40.0
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEECCe--EEE----ecCCceEEeceEEEEcchhhhHh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRREGG--ELI----AQGNGQEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~--~~~----~~~~~~~~~~~l~i~~v~~~~~~ 156 (163)
.....+|+++.|.|.. +.|.|.+.|+++.. ... ...+....++.|.|.++.++|++
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG 66 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAG 66 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCE
Confidence 4557889999999996 57889999998432 211 12233345567999999999875
No 251
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=97.97 E-value=8.5e-06 Score=45.98 Aligned_cols=49 Identities=16% Similarity=0.353 Sum_probs=35.5
Q ss_pred EEEEeEecc-CCCCeEEEEECCeEEEecCCc----e----EEeceEEEEcchhhhHhh
Q psy16425 109 VTLKCAASG-SPKPNITWRREGGELIAQGNG----Q----EDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 109 ~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~~----~----~~~~~l~i~~v~~~~~~~ 157 (163)
+.|.|.+.+ .|.+.+.|++++..+...... . ...+.|.|.++..+|++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~ 58 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGE 58 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEE
Confidence 478999874 688899999999887533211 1 134679999999998763
No 252
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.96 E-value=1.7e-05 Score=45.74 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=44.6
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~ 156 (163)
...+..|+++.|.|...+. .+.+.|++++..+..+.+.......|.|..++.+|++
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG 60 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSG 60 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCE
Confidence 5678899999999999775 6699999999988655455545555789999888875
No 253
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=97.96 E-value=2.7e-05 Score=44.38 Aligned_cols=28 Identities=29% Similarity=0.636 Sum_probs=23.7
Q ss_pred cEEEEeEec-cCCCCeEEEEECCeEEEec
Q psy16425 108 NVTLKCAAS-GSPKPNITWRREGGELIAQ 135 (163)
Q Consensus 108 ~~~l~C~~~-~~p~p~v~W~~~~~~~~~~ 135 (163)
.+.|.|.+. ++|+++++|++++.++...
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~ 29 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGV 29 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCC
Confidence 368999986 6899999999999998543
No 254
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.95 E-value=4.6e-05 Score=41.19 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=38.8
Q ss_pred EEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 6 LIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 6 ~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
.+.|...+.+...+.|++.+ ......... ..............|.|.+++..|.|.|.|.+.+.
T Consensus 2 ~l~C~~~~~~~~~~~W~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 65 (74)
T cd00096 2 TLTCLASGPPPPTITWLKNG-KPLPSSVLT-----RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNS 65 (74)
T ss_pred EEEEEecCCCCCcEEEEECC-EECCCcccE-----EeccccCcceeEEEEEECccCcccCcEEEEEEecC
Confidence 45666666788999999943 322110000 00001111123458999999999999999999554
No 255
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.94 E-value=7.8e-05 Score=43.81 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=40.8
Q ss_pred ceeEEEeeeecc-C-CCEEEEEEcCCceEEeeee---eEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425 3 ARMLIEIGEMLM-A-ESTVAWLRVDTQTILTIQT---HVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP 76 (163)
Q Consensus 3 ~~~~~~~~~~~~-~-~~~i~W~k~~~~~~~~~~~---~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~ 76 (163)
..+.|.|...+. | .+.|+|++ ++..+..... .....++.+... ..|.+......|.+.|+|.+.+.+
T Consensus 14 ~~~~L~C~a~g~~P~~~~i~W~~-~g~~~~~~~~~~~~~~~~~gt~~~~------s~l~v~~~~~~~~~~y~C~v~h~~ 85 (95)
T cd00098 14 GSVTLTCLATGFYPPDITVTWLK-NGKELTSGVTTTPPVPNSDGTYSVS------SQLTVSPSDWNSGDTYTCVVTHES 85 (95)
T ss_pred CCeEEEEEEeeEECCCcEEEEEE-CCEECCCceeccccccCCCCCEEEE------EEEEECHHHhCCCCCEEEEEEeCC
Confidence 357778887776 5 47899999 5555432211 111222223222 256677777779999999996653
No 256
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=97.94 E-value=5e-05 Score=45.07 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=40.0
Q ss_pred CcEEEeCCCcEEEEeEeccCCCC-eEEEEECCeEEEecC--CceE--------EeceEEEEcchhhh
Q psy16425 99 TDMVIREGSNVTLKCAASGSPKP-NITWRREGGELIAQG--NGQE--------DFPFFKRTKKKKKK 154 (163)
Q Consensus 99 ~~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~~~~--~~~~--------~~~~l~i~~v~~~~ 154 (163)
......+|+.+.|.|.+.+.|+| .|.|.+++..+.... +... ....|+|.++.+.|
T Consensus 9 ~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d 75 (98)
T cd05898 9 QVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEAD 75 (98)
T ss_pred ceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCcccc
Confidence 36778899999999999988887 478988877654432 1111 33678888886655
No 257
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=97.90 E-value=5.3e-05 Score=44.64 Aligned_cols=58 Identities=16% Similarity=0.274 Sum_probs=40.8
Q ss_pred CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEe--------cCCceE-----EeceEEEEcchhhhHh
Q psy16425 99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELIA--------QGNGQE-----DFPFFKRTKKKKKKKK 156 (163)
Q Consensus 99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~--------~~~~~~-----~~~~l~i~~v~~~~~~ 156 (163)
....+.+|+++.|.|.+.+.|.+.+.|++.++.+.. ..+... ....|+|.+|+.+|.+
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG 75 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEG 75 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCE
Confidence 466788999999999998888889999864332211 111111 2346899999999875
No 258
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.90 E-value=0.00019 Score=44.13 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=44.1
Q ss_pred ceeEEEeeeeccC--CCEEEEEEcCC--ceEE--eee---eeE---EecCCeEEEEeCC-CceEEEEEcccCCCCCeEEE
Q psy16425 3 ARMLIEIGEMLMA--ESTVAWLRVDT--QTIL--TIQ---THV---ITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYM 69 (163)
Q Consensus 3 ~~~~~~~~~~~~~--~~~i~W~k~~~--~~~~--~~~---~~~---~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~ 69 (163)
..+.|.|...... ...+.||+... .+.. ... ... ....+|+...... ...+.|.|.+++++|+|.|.
T Consensus 13 ~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsa~Yy 92 (117)
T cd04981 13 QSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPEDTAVYY 92 (117)
T ss_pred CCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHHHCEEEE
Confidence 3578888654332 46789999742 2211 110 110 1123566665444 34568999999999999999
Q ss_pred EEEE
Q psy16425 70 CQVN 73 (163)
Q Consensus 70 C~~~ 73 (163)
|...
T Consensus 93 Ca~~ 96 (117)
T cd04981 93 CARG 96 (117)
T ss_pred EEEE
Confidence 9874
No 259
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.80 E-value=0.00038 Score=40.03 Aligned_cols=56 Identities=13% Similarity=0.248 Sum_probs=39.1
Q ss_pred eeEEEeeeeccC--CCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 4 RMLIEIGEMLMA--ESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 4 ~~~~~~~~~~~~--~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
++.|.|...+.+ .+.|.|...++...... . .+..+|.+..++..|+|.++|.+...
T Consensus 16 sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~-----~-----------~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 16 NLTLTLHGSSNSLPAFKVEWRGPGNKSKQIL-----N-----------QDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred cEEEEEecCCCCCCCccEEEeCCCCccceec-----c-----------CCccEEEeceeCcccCCEEEEEEEEC
Confidence 677888876644 45999998665433110 0 11238999999999999999999543
No 260
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.79 E-value=9.3e-05 Score=43.59 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=38.5
Q ss_pred EEeCCCcEEEEeEeccCCCCeEEEEECCeEEEe--------------cCCce-------EEeceEEEEcchhhhHh
Q psy16425 102 VIREGSNVTLKCAASGSPKPNITWRREGGELIA--------------QGNGQ-------EDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 102 ~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~--------------~~~~~-------~~~~~l~i~~v~~~~~~ 156 (163)
...+|++++|.|...+.+.+.+.|+++++.... ..+.. .+...|+|.+++.+|.+
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsg 78 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSD 78 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCE
Confidence 467899999999999889999999976533210 01111 11235999999999875
No 261
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.77 E-value=0.00033 Score=40.29 Aligned_cols=63 Identities=14% Similarity=0.279 Sum_probs=35.8
Q ss_pred EEEeeeec-cCCCEEEEEEcCCceEEeeee--eEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 6 LIEIGEML-MAESTVAWLRVDTQTILTIQT--HVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 6 ~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
.|.|.+.+ .|...|.|++ ++..+..... .....++.+.... +|.+..-...+...|+|.+.+.
T Consensus 3 ~LtC~a~gf~P~~~itW~k-ng~~l~~~~~~~~~~~~~~t~~~~s------~L~~~~~~~d~g~~ytC~v~h~ 68 (83)
T cd05884 3 QLTCKTSGSKPAADIRWFK-NDKEIKDVKYLKEEDANRKTFTVSS------TLDFRVDRSDDGVAIICRVDHE 68 (83)
T ss_pred EEEEEeCCccCCCEEEEEE-CCEECcCceeeEeeCCCCCEEEEEE------EEEEEcccccCCCEEEEEEech
Confidence 34444433 6679999999 5555422111 1111222333222 6777766677788999999655
No 262
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.74 E-value=0.00026 Score=41.68 Aligned_cols=60 Identities=8% Similarity=0.050 Sum_probs=37.9
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN 73 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~ 73 (163)
..|.|.|.... ....+.|||.+........ .. ...+.....+.|.+++.+|+|.|.|...
T Consensus 16 ~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~------~~----~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 16 ENVTLQCHSDI-RFDRFILYKEGRSKPVLHL------YE----KHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CeEEEEEecCC-CCCEEEEEECCCCCCceec------cc----ccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 46888887654 5667899995433211000 00 0001123478999999999999999973
No 263
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.74 E-value=0.00013 Score=41.78 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=32.2
Q ss_pred EEEEeEecc-CCCCeEEEEECCeEEEecCCce-E------EeceEEEEcchhhhHhh
Q psy16425 109 VTLKCAASG-SPKPNITWRREGGELIAQGNGQ-E------DFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 109 ~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~~~-~------~~~~l~i~~v~~~~~~~ 157 (163)
+.|.|.+.| .|.+.|+|++++.++....... . ..+.|.+ .++++|.++
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~-~p~~eDdG~ 57 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLML-KVTKEDDGV 57 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEE-ECchhhCCC
Confidence 689999975 7999999999998886543211 1 2233444 566666654
No 264
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.67 E-value=6.5e-05 Score=44.32 Aligned_cols=57 Identities=9% Similarity=0.155 Sum_probs=41.5
Q ss_pred cEEEeCCCcEEEEeEe-ccC----CCCeEEEEECCeEEEecCCce-E--EeceEEEEcchhhhHh
Q psy16425 100 DMVIREGSNVTLKCAA-SGS----PKPNITWRREGGELIAQGNGQ-E--DFPFFKRTKKKKKKKK 156 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~-~~~----p~p~v~W~~~~~~~~~~~~~~-~--~~~~l~i~~v~~~~~~ 156 (163)
...+..|.+..|.|+- +++ +.|++.|++++.++....... . ++..|.|.+|..+|++
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G 68 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSG 68 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCE
Confidence 3456778999999983 443 677999999998875332211 1 3468999999999976
No 265
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.64 E-value=0.0001 Score=43.09 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=41.3
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEec-CCceEEeceEEEEcchhhhHhh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ-GNGQEDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~~~~~l~i~~v~~~~~~~ 157 (163)
...+.+|++|+|.|... .+...+.|+++|...... .......+.|.|.+|+.+|++.
T Consensus 10 ~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~ 67 (91)
T cd05751 10 SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGR 67 (91)
T ss_pred CCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEE
Confidence 34577899999999885 567789999998754321 1112345679999999998863
No 266
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.61 E-value=0.0027 Score=35.60 Aligned_cols=63 Identities=19% Similarity=0.273 Sum_probs=35.1
Q ss_pred EEEeeeecc--CCCEEEEEEcCCceEEee-e--eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 6 LIEIGEMLM--AESTVAWLRVDTQTILTI-Q--THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 6 ~~~~~~~~~--~~~~i~W~k~~~~~~~~~-~--~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
.|.|.+.+. +...|.|++ ++..+... . ......++.+.... .|.|......+...|+|.+...
T Consensus 3 ~L~C~a~gf~P~~i~v~W~k-~g~~~~~~~~~~~~~~~~~gt~~~~s------~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 3 TLVCLVSGFYPPDITVTWLR-NGQEVTSGVSTTDPLKNSDGTYFLSS------YLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred EEEEEEEeEeCCCCEEEEEE-CCEECCCCEEECceEECCCCCEEEEE------EEEEccccCCCCCEEEEEEEEc
Confidence 344554443 557999999 55542111 1 11112233333322 5677666677778999999654
No 267
>smart00409 IG Immunoglobulin.
Probab=97.60 E-value=0.0005 Score=38.70 Aligned_cols=57 Identities=28% Similarity=0.533 Sum_probs=42.0
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEEC-CeEEEecCCceE-E---eceEEEEcchhhhHh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRRE-GGELIAQGNGQE-D---FPFFKRTKKKKKKKK 156 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~-~~~~~~~~~~~~-~---~~~l~i~~v~~~~~~ 156 (163)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....+... . ...|.|.++..+|.+
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G 64 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSG 64 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCe
Confidence 45577899999999998888889999998 655542222222 1 257899999888775
No 268
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=97.60 E-value=0.0005 Score=38.70 Aligned_cols=57 Identities=28% Similarity=0.533 Sum_probs=42.0
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEEC-CeEEEecCCceE-E---eceEEEEcchhhhHh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRRE-GGELIAQGNGQE-D---FPFFKRTKKKKKKKK 156 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~-~~~~~~~~~~~~-~---~~~l~i~~v~~~~~~ 156 (163)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....+... . ...|.|.++..+|.+
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G 64 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSG 64 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCe
Confidence 45577899999999998888889999998 655542222222 1 257899999888775
No 269
>KOG3515|consensus
Probab=97.57 E-value=0.00024 Score=55.93 Aligned_cols=124 Identities=20% Similarity=0.319 Sum_probs=70.1
Q ss_pred eeeeccCCCEEEEEEcCCceEEeeee-eEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC--CCceEeEEEE
Q psy16425 9 IGEMLMAESTVAWLRVDTQTILTIQT-HVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD--PMKSQVGYLE 85 (163)
Q Consensus 9 ~~~~~~~~~~i~W~k~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~--~~~~~~~~l~ 85 (163)
....+.|.+.+.|+. +......... .......-.. ... .....+.+...+..+.|.|+|.+.+. ........+.
T Consensus 121 ~~~~~~P~~nlrW~~-n~r~e~~~~~~~~~~~~~a~g-ss~-t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~ 197 (741)
T KOG3515|consen 121 AKVAGRPNPNLRWGF-NNRAELNAVNQRGRVGAGALG-SSY-TEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLT 197 (741)
T ss_pred ecCCCCCCcceeeee-ccEEeecccCCcccccccccC-cee-ccccceeeEEEEecCCceeEcccccccCccccccceeE
Confidence 456777889999998 3333222111 1111101000 000 01125788888999999999999653 2222222333
Q ss_pred EEc--CCcccccC-CCCcEEEeCCCcEEEEeEec-cCCCCeEEEEECCeEEEec
Q psy16425 86 VVV--PPDILDYP-TSTDMVIREGSNVTLKCAAS-GSPKPNITWRREGGELIAQ 135 (163)
Q Consensus 86 v~~--~p~~~~~~-~~~~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~~~~~~ 135 (163)
+.+ +....... ...-....+|..+.|.|.+. ++|.+.+.|+++.......
T Consensus 198 i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~ 251 (741)
T KOG3515|consen 198 IIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSES 251 (741)
T ss_pred eecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhh
Confidence 332 22211111 11124567899999999765 6899999999998776443
No 270
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.52 E-value=0.00036 Score=41.52 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=37.2
Q ss_pred EEeCCCcEEEEeEecc-CCCCe--EEEEECCeEEEecCCce------EEeceEEEEcchhhhHhh
Q psy16425 102 VIREGSNVTLKCAASG-SPKPN--ITWRREGGELIAQGNGQ------EDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 102 ~~~~g~~~~l~C~~~~-~p~p~--v~W~~~~~~~~~~~~~~------~~~~~l~i~~v~~~~~~~ 157 (163)
.+.+|+.++|.|.+.+ .|.+. +.|++++..+....... .....+++ .+.++|.++
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~-~~~r~D~g~ 75 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITI-TVDREDHGA 75 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEE-ecchhhCCc
Confidence 3578999999999985 78886 79999998885432211 12234444 466777654
No 271
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.42 E-value=0.00038 Score=39.99 Aligned_cols=26 Identities=42% Similarity=0.893 Sum_probs=22.2
Q ss_pred EEEEeEecc-CCCCeEEEEECCeEEEe
Q psy16425 109 VTLKCAASG-SPKPNITWRREGGELIA 134 (163)
Q Consensus 109 ~~l~C~~~~-~p~p~v~W~~~~~~~~~ 134 (163)
+.|.|.+.+ +|.+.|+|++++..+..
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~ 28 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEG 28 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCC
Confidence 579999986 69999999999987654
No 272
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.39 E-value=0.0005 Score=39.24 Aligned_cols=26 Identities=38% Similarity=0.727 Sum_probs=22.1
Q ss_pred cEEEEeEecc-CCCCeEEEEECCeEEE
Q psy16425 108 NVTLKCAASG-SPKPNITWRREGGELI 133 (163)
Q Consensus 108 ~~~l~C~~~~-~p~p~v~W~~~~~~~~ 133 (163)
++.|.|.+.| +|.+.++|++++..+.
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~ 27 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLD 27 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEcc
Confidence 3689999986 6889999999998764
No 273
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.39 E-value=0.00023 Score=39.39 Aligned_cols=48 Identities=21% Similarity=0.444 Sum_probs=33.0
Q ss_pred cEEEEeEeccCC-CCeEEEEECCeE--EEecCCceEEeceEEEEcchhhhHh
Q psy16425 108 NVTLKCAASGSP-KPNITWRREGGE--LIAQGNGQEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 108 ~~~l~C~~~~~p-~p~v~W~~~~~~--~~~~~~~~~~~~~l~i~~v~~~~~~ 156 (163)
.+.|.|.+.+.| .+.+.|+ +... ...........+.|.|.+|+.+|.+
T Consensus 17 ~~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g 67 (75)
T PF13927_consen 17 SVTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSSSNSTLTISNVTRSDNG 67 (75)
T ss_dssp EEEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEEEEEEEEESSCCGGGTE
T ss_pred eEEEEEEEccccCCeEEEEE-ecCCceeeeeeeccceeeEEEEccCCHHhCc
Confidence 399999999877 7789999 1111 1111122236678999999998875
No 274
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.33 E-value=0.00088 Score=41.60 Aligned_cols=71 Identities=14% Similarity=0.144 Sum_probs=39.9
Q ss_pred ceeEEEeeeec-----cCCCEEEEEEcCCceEEeeeeeE----EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425 3 ARMLIEIGEML-----MAESTVAWLRVDTQTILTIQTHV----ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN 73 (163)
Q Consensus 3 ~~~~~~~~~~~-----~~~~~i~W~k~~~~~~~~~~~~~----~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~ 73 (163)
..++++|.... .+...|.|.. ++..+....+.. .....+..+.....|+++|.+.....- .|.|+|++.
T Consensus 28 ~tV~IPC~v~n~~~~ni~~m~VkWk~-~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeVt 105 (130)
T PF08204_consen 28 DTVVIPCFVNNLEANNISEMYVKWKF-KNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEVT 105 (130)
T ss_dssp SEEEE--BBSS---SSGGGEEEEEEE-TTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEEE
T ss_pred CCEEEEeEeccccccccceEEEEEEE-CCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEEE
Confidence 35788888755 4567799999 556665432210 111123333333357889999887766 899999995
Q ss_pred eC
Q psy16425 74 TD 75 (163)
Q Consensus 74 ~~ 75 (163)
..
T Consensus 106 ~~ 107 (130)
T PF08204_consen 106 EL 107 (130)
T ss_dssp ET
T ss_pred ec
Confidence 44
No 275
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=97.32 E-value=0.00059 Score=40.73 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=40.8
Q ss_pred cEEEeCCCcEEEEeEec------cC-----CCCeEEEEECCeEEEecC-------CceEEeceEEEEcchhhhHh
Q psy16425 100 DMVIREGSNVTLKCAAS------GS-----PKPNITWRREGGELIAQG-------NGQEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~------~~-----p~p~v~W~~~~~~~~~~~-------~~~~~~~~l~i~~v~~~~~~ 156 (163)
...+.+|+.+.|.|... ++ +...+.|++++..+.... +....+..|.|.++..+|++
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG 83 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSG 83 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCe
Confidence 45678899999999962 11 233799999975443322 34457889999999999875
No 276
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.30 E-value=0.0039 Score=46.71 Aligned_cols=81 Identities=19% Similarity=0.239 Sum_probs=59.2
Q ss_pred CceEEEEEcccCCCCCeEEEEEEEeC----CCceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC--e
Q psy16425 50 TKAWYLHIREVRESDRGWYMCQVNTD----PMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP--N 122 (163)
Q Consensus 50 ~~~~~L~i~~v~~~d~G~Y~C~~~~~----~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p--~ 122 (163)
.++..|.|.++...++|.|+=.+.+. ......+.+.....|.+...+ ..+.+|+...-.|.+..+ |+- .
T Consensus 286 p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p----~PVL~Ge~YkAtC~vA~YYPp~Svr 361 (566)
T PHA03269 286 TSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG----DPVLLGNPYAAYCKVNKYYPPHSVI 361 (566)
T ss_pred CCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC----CccccCCCceEEEEeeeecCCCceE
Confidence 46678999999999999998665332 122344556667778666543 347889999999999864 533 5
Q ss_pred EEEEECCeEEEe
Q psy16425 123 ITWRREGGELIA 134 (163)
Q Consensus 123 v~W~~~~~~~~~ 134 (163)
+.|+.|++++..
T Consensus 362 lrWf~ng~~V~~ 373 (566)
T PHA03269 362 VKWTSNFGNIGK 373 (566)
T ss_pred EEEEeCCcccCc
Confidence 999999888763
No 277
>PHA02633 hypothetical protein; Provisional
Probab=97.30 E-value=0.00081 Score=35.84 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=25.4
Q ss_pred EEEEcccCCCCCeEEEEEEEeCC-CceEeEEEEEEc
Q psy16425 54 YLHIREVRESDRGWYMCQVNTDP-MKSQVGYLEVVV 88 (163)
Q Consensus 54 ~L~i~~v~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~ 88 (163)
.|+|-++..+|+|.|.|.+.+.. .....+.|.|..
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 79999999999999999996542 223334455443
No 278
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=97.25 E-value=0.0019 Score=38.42 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=41.2
Q ss_pred CcEEEeCCCcEEEEeEeccCCCCe-EEEEECCeEEEecCC--ce-------EEeceEEEEcchhhhHh
Q psy16425 99 TDMVIREGSNVTLKCAASGSPKPN-ITWRREGGELIAQGN--GQ-------EDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 99 ~~~~~~~g~~~~l~C~~~~~p~p~-v~W~~~~~~~~~~~~--~~-------~~~~~l~i~~v~~~~~~ 156 (163)
....+.+|+++.|.|.+.++|+|+ +.|.+++..+..... .. ...+.|.+..+..++++
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G 78 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGG 78 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCc
Confidence 356788999999999999999998 999988765422211 00 12256777777766654
No 279
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.22 E-value=0.0073 Score=35.55 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=33.4
Q ss_pred eEEEeeeeccCCCEEEEEEcCCceEEee---eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 5 MLIEIGEMLMAESTVAWLRVDTQTILTI---QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
+.|.+...-.+...|.|++ ++..+... .......++.+.... .|.+..-...+...|+|.+...
T Consensus 19 L~C~a~gFyP~~I~vtW~~-dg~~~~~~~~~s~~~~~~~~Ty~~~S------~L~v~~~~w~~~~~ytC~V~H~ 85 (94)
T cd05847 19 LLCLISGYTPGTIEVEWLV-DGQVATLVAASTAPQKEEGSTFSTTS------ELNVTQEDWKSGKTYTCKVTHQ 85 (94)
T ss_pred EEEEEEeEECCCCEEEEEE-CCEECcCceeecccEECCCCcEEEEE------EEEEchHHhcCCCeEEEEEEEC
Confidence 3344444444568899999 55543111 111122233333222 4556644444667899999654
No 280
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.21 E-value=0.0014 Score=37.94 Aligned_cols=27 Identities=52% Similarity=1.079 Sum_probs=22.9
Q ss_pred CCcEEEEeEec-cCCCCeEEEEECCeEE
Q psy16425 106 GSNVTLKCAAS-GSPKPNITWRREGGEL 132 (163)
Q Consensus 106 g~~~~l~C~~~-~~p~p~v~W~~~~~~~ 132 (163)
|+.+.+.|.+. ++|+|.++|+.++..+
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~ 41 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPV 41 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCce
Confidence 67899999875 6999999999999877
No 281
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.20 E-value=0.00087 Score=40.75 Aligned_cols=48 Identities=29% Similarity=0.549 Sum_probs=33.0
Q ss_pred EEcCCcccccCCCCcEEEeCCCcEEEEeEecc-CCC-CeEEEEECCeEEEe
Q psy16425 86 VVVPPDILDYPTSTDMVIREGSNVTLKCAASG-SPK-PNITWRREGGELIA 134 (163)
Q Consensus 86 v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-p~v~W~~~~~~~~~ 134 (163)
|.++|........ ......|+.++|.|.+.+ +|+ ..++|++||..+..
T Consensus 2 v~~~P~~p~i~~~-~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~ 51 (111)
T cd05772 2 VRAKPSVPVVSGP-SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSA 51 (111)
T ss_pred cccCCCCcEeCCc-hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcc
Confidence 3455655544432 333456888999999987 564 58999999988743
No 282
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.20 E-value=0.014 Score=33.71 Aligned_cols=66 Identities=12% Similarity=0.168 Sum_probs=37.9
Q ss_pred eeEEEe-eeeccCCCEEEEEEcCCceE-EeeeeeE-EecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425 4 RMLIEI-GEMLMAESTVAWLRVDTQTI-LTIQTHV-ITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP 76 (163)
Q Consensus 4 ~~~~~~-~~~~~~~~~i~W~k~~~~~~-~~~~~~~-~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~ 76 (163)
.+.+.| ...+.|.+.|.|+.. +..+ ....... ....+.+.+.. .|.+..-...+...++|.+.+..
T Consensus 16 ~~~~~C~s~~~~P~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~S------~l~~~~~~~~~~~~~~C~~~~~~ 84 (89)
T PF08205_consen 16 EVTLTCSSSGGYPPPQITWYLD-GGPVVASNTTQSSSPDNGLFTVSS------TLTLTPTREDHGKTLTCRASHPA 84 (89)
T ss_dssp EEEEEEEEEEEBS-EEEEEEET-TCEECEEEEEEEEETTTTTEEEEE------EEEEETTGGGTTEEEEEEEEETT
T ss_pred EEEEEEEeCCeECCeEEEEEEC-CCceeeeeeeeeeccCCCcceEEE------EEEEEcChHHCCeEEEEEEECCc
Confidence 466677 567889999999994 4443 1111111 12222222221 56676555567788999997653
No 283
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.20 E-value=0.0016 Score=39.25 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=39.3
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEECCe--EE----Ee--------cCCceE------EeceEEEEcchhhhHh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRREGG--EL----IA--------QGNGQE------DFPFFKRTKKKKKKKK 156 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~--~~----~~--------~~~~~~------~~~~l~i~~v~~~~~~ 156 (163)
...+.+|+++.|.|...+.+.+.+.|++... .. .. ..+... ....|+|.+++.+|++
T Consensus 7 ~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 7 SLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred ceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence 5678899999999999877788999997532 10 00 011111 2357888999988875
No 284
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.20 E-value=0.011 Score=34.83 Aligned_cols=63 Identities=16% Similarity=0.108 Sum_probs=35.8
Q ss_pred eEEEeee-eccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 5 MLIEIGE-MLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 5 ~~~~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
.++.|.. .+.|.+.|.|++........ ......++.+.+.. .|.+......|...|+|.+.+.
T Consensus 18 ~va~C~s~~gkP~a~ItW~~~~~~~~~~--~~~~~~~g~~tv~S------~l~~~p~~~d~G~~~tC~v~h~ 81 (95)
T cd05719 18 TVATCVSANGKPPATISWETTLGGEAET--QSKENPNGTVTVTS------EYRLVPSREANGKELTCVVSHP 81 (95)
T ss_pred EEEEEECCCCcCCCEEEEEeCCCCccee--EeecCCCCCEEEEE------EEEEecCHHHCCCEEEEEEeCc
Confidence 3444554 78999999999941111111 11111222233222 5677666667777899999655
No 285
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.20 E-value=0.0069 Score=44.76 Aligned_cols=99 Identities=17% Similarity=0.240 Sum_probs=65.5
Q ss_pred eEEEEEcccCCCCCeEEEEEEEeC-C--CceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC--eEEE
Q psy16425 52 AWYLHIREVRESDRGWYMCQVNTD-P--MKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP--NITW 125 (163)
Q Consensus 52 ~~~L~i~~v~~~d~G~Y~C~~~~~-~--~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p--~v~W 125 (163)
...|.|..+....+|.|+=...+. . .....+.+..+..|.+...+ ..+.+|+...-.|.+..+ |+- .+.|
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~----~PvL~Ge~Y~AtC~va~YYPp~Sv~lrW 256 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP----HAVLEGEPFGATCVAANYYPGDRAAFRW 256 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC----CccccCCCceEEEEeeeecCCCceEEEE
Confidence 345999999999999999987433 2 22233456666677766643 247789999999999864 533 5999
Q ss_pred EECCeEEEecCCce-----EEeceEEEEcchhhh
Q psy16425 126 RREGGELIAQGNGQ-----EDFPFFKRTKKKKKK 154 (163)
Q Consensus 126 ~~~~~~~~~~~~~~-----~~~~~l~i~~v~~~~ 154 (163)
+.|+.++....... ..+++.++..++.+.
T Consensus 257 f~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea 290 (466)
T PHA03270 257 FEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEA 290 (466)
T ss_pred EeCCccccCcceeeeeeEecCCCeeEEEEEeccc
Confidence 99999875432222 133444555555443
No 286
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=97.15 E-value=0.00074 Score=46.56 Aligned_cols=52 Identities=19% Similarity=0.400 Sum_probs=41.8
Q ss_pred eeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425 11 EMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT 74 (163)
Q Consensus 11 ~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~ 74 (163)
.....+|.++|...++..+ ..+.++.+...| .|.+.+...+++|.|+|....
T Consensus 7 ~~E~iDP~y~W~GP~g~~l--------~gn~~~nIT~TG----~L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 7 NKELIDPTYLWTGPNGKPL--------SGNSYVNITETG----KLMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred hcccCCCceEEECCCCccc--------CCCCeEEEccCc----eEEeeccccccCCceEEEEEE
Confidence 3456778999998777665 455677777766 899999999999999999953
No 287
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.08 E-value=0.0029 Score=34.56 Aligned_cols=59 Identities=14% Similarity=0.348 Sum_probs=37.8
Q ss_pred ceeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeE
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVG 82 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 82 (163)
+.|++.|.. ...|.|++ +...... . +..|-+..+...-.|.|.|.+.+ .....
T Consensus 7 ~~V~L~C~~----~tsi~W~k-G~~~~~~--------------~-----~~tlnLGs~~~DPRG~Y~C~~s~---~~~~~ 59 (69)
T cd07691 7 GKVFLKCNG----ATNITWKK-GKEILEV--------------S-----NTLLDLGSRINDPRGTYSCKESE---PNKEK 59 (69)
T ss_pred ceEEEEecC----CCcEEEec-Ccccccc--------------c-----ccEEeccCcccCCCcceEecCcc---CCCcE
Confidence 468888854 25599999 5443310 0 11677888888899999998854 23334
Q ss_pred EEEEEc
Q psy16425 83 YLEVVV 88 (163)
Q Consensus 83 ~l~v~~ 88 (163)
.|.|++
T Consensus 60 ~LQVyY 65 (69)
T cd07691 60 TLQVYY 65 (69)
T ss_pred EEEEEE
Confidence 555543
No 288
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.07 E-value=0.002 Score=37.02 Aligned_cols=26 Identities=31% Similarity=0.736 Sum_probs=22.0
Q ss_pred EEEEeEecc-CCCCeEEEEECCeEEEe
Q psy16425 109 VTLKCAASG-SPKPNITWRREGGELIA 134 (163)
Q Consensus 109 ~~l~C~~~~-~p~p~v~W~~~~~~~~~ 134 (163)
+.|.|.+.| +|++.++|+++|..+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~ 28 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKD 28 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcC
Confidence 579999986 78889999999998643
No 289
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.07 E-value=0.0023 Score=36.60 Aligned_cols=25 Identities=40% Similarity=0.783 Sum_probs=21.7
Q ss_pred EEEEeEecc-CCCCeEEEEECCeEEE
Q psy16425 109 VTLKCAASG-SPKPNITWRREGGELI 133 (163)
Q Consensus 109 ~~l~C~~~~-~p~p~v~W~~~~~~~~ 133 (163)
+.|.|.+.+ +|.+.++|++++..+.
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~ 27 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELK 27 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEcc
Confidence 689999975 6999999999998875
No 290
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.05 E-value=0.015 Score=36.68 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=36.7
Q ss_pred eeEEEeeeecc-CC-CEEEEEEcCCceEE--------eeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425 4 RMLIEIGEMLM-AE-STVAWLRVDTQTIL--------TIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN 73 (163)
Q Consensus 4 ~~~~~~~~~~~-~~-~~i~W~k~~~~~~~--------~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~ 73 (163)
.+.|.|.+.+. |. +.|.|++.+..... .........++.+.+.. .|.|..-...+.+.|+|.+.
T Consensus 55 ~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s------~L~v~~~~~~~g~~ytC~V~ 128 (139)
T cd05771 55 PQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSS------HLTLEPGTEDAGATYTCRVS 128 (139)
T ss_pred cEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEE------EEEecCCccCCCCEEEEEEE
Confidence 46778888775 43 58999995422110 00011112233333332 56676665566779999996
Q ss_pred eC
Q psy16425 74 TD 75 (163)
Q Consensus 74 ~~ 75 (163)
+.
T Consensus 129 H~ 130 (139)
T cd05771 129 HV 130 (139)
T ss_pred cC
Confidence 54
No 291
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.04 E-value=0.0016 Score=38.51 Aligned_cols=30 Identities=33% Similarity=0.791 Sum_probs=25.0
Q ss_pred cEEEeCCCcEEE-EeEec-cCCCCeEEEEECC
Q psy16425 100 DMVIREGSNVTL-KCAAS-GSPKPNITWRREG 129 (163)
Q Consensus 100 ~~~~~~g~~~~l-~C~~~-~~p~p~v~W~~~~ 129 (163)
...+.+|+.+.+ .|.+. |.|+++|+|+.+.
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~ 41 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNV 41 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCC
Confidence 556778898888 99985 7899999999863
No 292
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.04 E-value=0.0013 Score=38.65 Aligned_cols=57 Identities=18% Similarity=0.115 Sum_probs=39.4
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEec----CCceEEeceEEEEcchhhhHhh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQ----GNGQEDFPFFKRTKKKKKKKKK 157 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~----~~~~~~~~~l~i~~v~~~~~~~ 157 (163)
...+.+|++++|.|.... +.-.+.|++++...... .........|.|..++.+|++.
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~ 69 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGT 69 (94)
T ss_pred CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEE
Confidence 445778999999998765 45579999988653211 1111234578999999988764
No 293
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.03 E-value=0.024 Score=33.42 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=36.5
Q ss_pred eEEEe-eeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 5 MLIEI-GEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 5 ~~~~~-~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
.++.| ...+-|.+.|.|++........ ......++++.+.. .|.+......|...|+|.+.+.
T Consensus 18 ~va~C~s~~gkPaa~IsW~~~~~g~~~~--~~~~~~~gt~tv~S------~l~~~P~~~d~Gk~ltC~v~h~ 81 (95)
T cd07703 18 PVAKCVSANGRPPARISWSSTLGGNANT--TSKENGDGTVTVTS------EYSLVPTPEANGKEVTCKVEHE 81 (95)
T ss_pred EEEEEEcCCCCCCcEEEEEcCCCCCeeE--EEEeCCCCCEEEEE------EEEEecCHHHCCCEEEEEEeCc
Confidence 34445 4568899999999842211111 11112233333332 5777666667778899999665
No 294
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.01 E-value=0.013 Score=34.83 Aligned_cols=64 Identities=19% Similarity=0.334 Sum_probs=34.9
Q ss_pred eEEEeeeeccCCCEEEEEEcCCceEEee---eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 5 MLIEIGEMLMAESTVAWLRVDTQTILTI---QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
+.|.+...-.+...|.|++ ++..+... .......++.+.... .|.+..-...+...|+|.+...
T Consensus 22 L~C~~~gfyP~~i~v~W~~-~g~~~~~~~~~~~~~~~~dgty~~~s------~L~v~~~~w~~~~~~sC~V~H~ 88 (100)
T cd07699 22 LVCLINDFYPGFATVQWKV-DGATVSSGVQTSTTEQQSDNTYSLSS------YLTLTKSDWNKHKVYTCEVTHE 88 (100)
T ss_pred EEEEEEeEECCCCEEEEEE-CCEECcccEeccccEECCCCCEEEEE------EEEEcHHHhCCCCeEEEEEEec
Confidence 3344444444478899999 55554211 111122234444332 5666655555567899999654
No 295
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.01 E-value=0.025 Score=33.20 Aligned_cols=61 Identities=10% Similarity=0.171 Sum_probs=33.6
Q ss_pred eEEEeeeeccCCCEEEEEEcCCceEEee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 5 MLIEIGEMLMAESTVAWLRVDTQTILTI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
++|.+..+-.+...|.|++ ++..+... .......+..++... .|.+ .+.+...|+|.+...
T Consensus 20 L~C~a~gFyP~~i~v~W~~-dg~~~~~~~~~~~~p~~d~tyq~~s------~l~~---~~~~~~~ysC~V~H~ 82 (93)
T cd05770 20 LNCYVTGFHPPDIEIRLLK-NGVKIPKVEQSDLSFSKDWTFYLLK------STEF---TPTKGDEYACRVRHN 82 (93)
T ss_pred EEEEEEEEeCCCCEEEEEE-CCEECCCcEECcEEECCCCCEEEEE------EEEE---CCCCCCeEEEEEEEC
Confidence 4445555556678889999 66554211 111122333333222 3333 456778899999654
No 296
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.98 E-value=0.027 Score=33.11 Aligned_cols=62 Identities=13% Similarity=0.240 Sum_probs=33.8
Q ss_pred eEEEeeeeccCCCEEEEEEcCCceEEe---eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425 5 MLIEIGEMLMAESTVAWLRVDTQTILT---IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP 76 (163)
Q Consensus 5 ~~~~~~~~~~~~~~i~W~k~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~ 76 (163)
++|.+..+-.+...|.|.+ ++..+.. ........++.+.... .|.+. +.+...|+|.+...+
T Consensus 20 L~C~a~gFyP~~I~v~W~~-~g~~~~~~~~~~~~~~~~Dgty~~~s------~L~v~---~~~~~~ytC~V~H~~ 84 (94)
T cd05767 20 LICFVDNFFPPVLNVTWLK-NGVPVTDGVSETRYYPRQDLSFQKFS------YLNFT---PEEGDIYSCIVEHWG 84 (94)
T ss_pred EEEEEEEEECCcCEEEEEE-CCeEccCceEEeeeEeCCCCcEEEEE------EEEEE---CCCCCeEEEEEEeCC
Confidence 4444445555668889999 5555321 1122223344444332 45554 345678999996543
No 297
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=96.96 E-value=0.0021 Score=37.11 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=35.1
Q ss_pred CCcEEEEeEeccCC--CCeEEEEECCeEEEecC--C---c-----eEEeceEEEEcchhhhHh
Q psy16425 106 GSNVTLKCAASGSP--KPNITWRREGGELIAQG--N---G-----QEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 106 g~~~~l~C~~~~~p--~p~v~W~~~~~~~~~~~--~---~-----~~~~~~l~i~~v~~~~~~ 156 (163)
|+++.|.|.+.+.| ...+.|...+..+.... . . ....+.|.|.+++.+|.+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG 63 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLG 63 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCE
Confidence 78899999998755 45789988775431110 0 0 123568999999998875
No 298
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.94 E-value=0.018 Score=43.08 Aligned_cols=78 Identities=17% Similarity=0.225 Sum_probs=56.2
Q ss_pred eEEEEEcccCCCCCeEEEEEEEeC-CC--ceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC--eEEE
Q psy16425 52 AWYLHIREVRESDRGWYMCQVNTD-PM--KSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP--NITW 125 (163)
Q Consensus 52 ~~~L~i~~v~~~d~G~Y~C~~~~~-~~--~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p--~v~W 125 (163)
++.|.|..+...++|.|+=...+. +. ....+.+....+|.+...+ ..+.+|+...-.|.+..+ |+- .+.|
T Consensus 197 ~~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~----~PvL~Ge~y~A~C~aa~YYPp~Sv~~rW 272 (486)
T PHA03273 197 KFPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV----HPSLKGENYRAVCVVASYFPHSSVKLRW 272 (486)
T ss_pred ccceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC----CccccCCCceEEEEeeeecCCCceEEEE
Confidence 367999999999999998665332 22 2233344446677766643 347889999999999864 532 5999
Q ss_pred EECCeEEE
Q psy16425 126 RREGGELI 133 (163)
Q Consensus 126 ~~~~~~~~ 133 (163)
+.|+.++.
T Consensus 273 f~dg~~V~ 280 (486)
T PHA03273 273 YKNAKEVD 280 (486)
T ss_pred EeCCeecc
Confidence 99999886
No 299
>KOG3515|consensus
Probab=96.93 E-value=0.0056 Score=48.58 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=76.4
Q ss_pred ceeEEEeeeecc-CCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC--Cce
Q psy16425 3 ARMLIEIGEMLM-AESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP--MKS 79 (163)
Q Consensus 3 ~~~~~~~~~~~~-~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~--~~~ 79 (163)
.+|-|.|...+. |.+.+.||+.+.... +|....... .|.......+.-+.|.|++.+.. ...
T Consensus 23 ~~v~l~C~v~~~pp~~~~eW~h~~~~~~-----------~~~~~~~~~----~~~~~~~~~~~~~~~~c~a~ns~~~~~~ 87 (741)
T KOG3515|consen 23 EDVPLPCRVNSNPPEIDVEWYHSTSGEH-----------GRYATIADP----TLVTTGDVRDTVAELNCRAFNSVGMPSR 87 (741)
T ss_pred CcceeeeecCCCCCCcceEEEecCcccc-----------cccccccCC----ceeeecchhhhhhhhhhhhcccccCcee
Confidence 468888886554 557899999543221 222222222 67888888888899999996652 233
Q ss_pred EeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEec--cCCCCeEEEEECCeEEEec
Q psy16425 80 QVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAAS--GSPKPNITWRREGGELIAQ 135 (163)
Q Consensus 80 ~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~--~~p~p~v~W~~~~~~~~~~ 135 (163)
....+.+.++|...... .......+..+.+.|.+. +.|.+.+.|..++......
T Consensus 88 ~~~~l~v~~~pa~~~~~--~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~ 143 (741)
T KOG3515|consen 88 CPMILDVDYPPACLPEL--GEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNA 143 (741)
T ss_pred cceeeccccCccccccc--cchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecc
Confidence 44556777776544422 234456788899999654 5678899999988765444
No 300
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.90 E-value=0.017 Score=35.15 Aligned_cols=69 Identities=7% Similarity=0.131 Sum_probs=43.5
Q ss_pred eeEEEeee--eccCC-CEEEEEEcCCceEEee------eeeEEecCCeEEEEeCC-CceEEEEEcccCCCCCeEEEEEE
Q psy16425 4 RMLIEIGE--MLMAE-STVAWLRVDTQTILTI------QTHVITKNHRIGVTHSE-TKAWYLHIREVRESDRGWYMCQV 72 (163)
Q Consensus 4 ~~~~~~~~--~~~~~-~~i~W~k~~~~~~~~~------~~~~~~~~~r~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~ 72 (163)
.+.|.|.. ..... -.+.|+|+....+... +.......+|+.+..+. ...++|.|.+++.+|.+.|.|..
T Consensus 15 sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~ 93 (115)
T cd05721 15 AASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKI 93 (115)
T ss_pred CEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEe
Confidence 46666755 33444 5789999643322111 11111234566666555 36789999999999999999976
No 301
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=96.90 E-value=0.0074 Score=35.59 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=38.7
Q ss_pred CcEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEE--------ecCCceE-----EeceEEEEcchhhhHh
Q psy16425 99 TDMVIREGSNVTLKCAASGSPKPNITWRREGGELI--------AQGNGQE-----DFPFFKRTKKKKKKKK 156 (163)
Q Consensus 99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~--------~~~~~~~-----~~~~l~i~~v~~~~~~ 156 (163)
....+.+|+++.|.|.+.+.....+.|++.+..+. .+.+... ..-.|+|.++..+|.+
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G 75 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEG 75 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCE
Confidence 35778899999999999987666677876664432 1112111 1235888888888764
No 302
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.89 E-value=0.0031 Score=38.15 Aligned_cols=30 Identities=27% Similarity=0.627 Sum_probs=25.3
Q ss_pred CcEEEeCCCcEEEEeEeccCCCCeEEEEECC
Q psy16425 99 TDMVIREGSNVTLKCAASGSPKPNITWRREG 129 (163)
Q Consensus 99 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~ 129 (163)
....+.+|++++|.|...+ +.+.+.|++..
T Consensus 6 ~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~ 35 (110)
T cd05899 6 RYLIKGRGQSVTLRCSQTS-GHDNMYWYRQD 35 (110)
T ss_pred CceEEcCCCcEEEEEEECC-CCCEEEEEEEC
Confidence 3567889999999999987 77889999864
No 303
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.79 E-value=0.034 Score=32.70 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=31.7
Q ss_pred eEEEeee--eccCCCEEEEEEcCCceEEe---eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425 5 MLIEIGE--MLMAESTVAWLRVDTQTILT---IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP 76 (163)
Q Consensus 5 ~~~~~~~--~~~~~~~i~W~k~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~ 76 (163)
+.|.|.+ .-.+...+.|++ ++..+.. ........++.+.... .|.+ ...+...|+|.+...+
T Consensus 17 ~~L~C~~~gFyP~~i~v~W~~-~g~~~~~~~~~~~~~~~~dgTy~~~s------~L~~---~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 17 HLLVCHVWGFYPPEITVKWFK-NGQEETEGVVSTELIPNGDWTYQILV------MLET---TPSRGDTYTCVVEHSS 83 (94)
T ss_pred eEEEEEEeeecCCCCEEEEEE-CCeecCCCceecceEECCCCcEEEEE------EEEE---cCCCCCEEEEEEEeCC
Confidence 4444544 444556889999 5554321 1111122223333222 3433 3346678999996553
No 304
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.77 E-value=0.0051 Score=37.51 Aligned_cols=30 Identities=30% Similarity=0.583 Sum_probs=25.3
Q ss_pred CcEEEeCCCcEEEEeEecc--CCCCeEEEEEC
Q psy16425 99 TDMVIREGSNVTLKCAASG--SPKPNITWRRE 128 (163)
Q Consensus 99 ~~~~~~~g~~~~l~C~~~~--~p~p~v~W~~~ 128 (163)
....+.+|++++|.|.+.+ .+.+.+.|++.
T Consensus 6 ~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq 37 (116)
T cd04982 6 LSITREESKSVTISCKVSGIDFSTTYIHWYRQ 37 (116)
T ss_pred CeEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence 3567888999999999877 67788999985
No 305
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=96.76 E-value=0.043 Score=32.09 Aligned_cols=64 Identities=14% Similarity=0.270 Sum_probs=31.6
Q ss_pred eeEEEeeeecc-C-CCEEEEEEcCCceEEee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425 4 RMLIEIGEMLM-A-ESTVAWLRVDTQTILTI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP 76 (163)
Q Consensus 4 ~~~~~~~~~~~-~-~~~i~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~ 76 (163)
.+.|.|.+.+. | ...|.|++.+....... .......++.+.... .|.+. ..+.+.|+|.+.+.+
T Consensus 16 ~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s------~l~v~---~~~~~~ytC~V~H~~ 83 (93)
T cd07698 16 SLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWV------TLEVP---PEDKARYSCRVEHSG 83 (93)
T ss_pred cEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEE------EEEEC---CCCCCEEEEEEEeCC
Confidence 45666666664 3 35899999432221110 111111122222111 33343 347889999996553
No 306
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.74 E-value=0.026 Score=33.34 Aligned_cols=65 Identities=15% Similarity=0.207 Sum_probs=31.8
Q ss_pred eEEEeeee-ccCCCEEEEEEcCCceEEee-eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 5 MLIEIGEM-LMAESTVAWLRVDTQTILTI-QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 5 ~~~~~~~~-~~~~~~i~W~k~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
+.|.+... ..+...|.|.++++...... .......++.+.... .|.+..-...+...|+|.+...
T Consensus 19 LtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s------~l~v~~~~w~~g~~ysC~V~H~ 85 (96)
T cd07696 19 LTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTS------TLNVSTDDWISGDTFQCKVTHP 85 (96)
T ss_pred EEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEE------EEEeCHHHccCCCcEEEEEECC
Confidence 34444444 44667889999544332111 111112233333222 4555544333455799999654
No 307
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.74 E-value=0.039 Score=31.43 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=34.8
Q ss_pred eeEEEeee--eccCCCEEEEEEcCCceEEe---eeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425 4 RMLIEIGE--MLMAESTVAWLRVDTQTILT---IQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP 76 (163)
Q Consensus 4 ~~~~~~~~--~~~~~~~i~W~k~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~ 76 (163)
.+.|.|.. .......|.|++ ++..+.. ........++.+.... .|.+. ..+...|+|.+...+
T Consensus 10 ~~~L~C~v~~f~P~~i~v~W~~-~~~~~~~~~~~~~~~~~~dgty~~~s------~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 10 SVTLTCLVSGFYPKDITVTWLK-NGKEVTEGVETTPPPPNSDGTYSVTS------SLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp EEEEEEEEEEEBSSTEEEEEEE-TTEEETTTEEEEEEEEETTSEEEEEE------EEEEE---TTTTGGEEEEEEETT
T ss_pred CEEEEEEEEEEECCCcEEEEEe-ccceeeeeeeecccccccccceeeeE------EEEec---CCCCCEEEEEEEECC
Confidence 34455544 444566899999 5554321 1111113445555443 45555 555668999996553
No 308
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.65 E-value=0.0054 Score=36.49 Aligned_cols=28 Identities=43% Similarity=0.710 Sum_probs=23.0
Q ss_pred EEeCCCcEEEEeEeccC-CCCeEEEEECC
Q psy16425 102 VIREGSNVTLKCAASGS-PKPNITWRREG 129 (163)
Q Consensus 102 ~~~~g~~~~l~C~~~~~-p~p~v~W~~~~ 129 (163)
.+.+|++++|.|..... +...+.|++..
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~ 30 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQK 30 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEEC
Confidence 46789999999999876 66789999853
No 309
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=96.65 E-value=0.0035 Score=36.62 Aligned_cols=32 Identities=41% Similarity=0.725 Sum_probs=26.1
Q ss_pred eCCCcEEEEeEeccC-CC-CeEEEEECCeEEEec
Q psy16425 104 REGSNVTLKCAASGS-PK-PNITWRREGGELIAQ 135 (163)
Q Consensus 104 ~~g~~~~l~C~~~~~-p~-p~v~W~~~~~~~~~~ 135 (163)
..|+.+.|.|.+.|+ |. +.++|++++..+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~ 44 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSG 44 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCc
Confidence 358899999999986 64 589999999887544
No 310
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.59 E-value=0.028 Score=41.52 Aligned_cols=81 Identities=20% Similarity=0.374 Sum_probs=54.8
Q ss_pred ceEEEEEcccCCCCCeEEEEEEEeC---CCceEeEEEEEEc-CCcccccCCCCcEEEeCCCcEEEEeEeccC-CCC--eE
Q psy16425 51 KAWYLHIREVRESDRGWYMCQVNTD---PMKSQVGYLEVVV-PPDILDYPTSTDMVIREGSNVTLKCAASGS-PKP--NI 123 (163)
Q Consensus 51 ~~~~L~i~~v~~~d~G~Y~C~~~~~---~~~~~~~~l~v~~-~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p--~v 123 (163)
.+..|.|.++...|+|.|.....+. ........+.+.+ +|.+...+ ..+.+|+.....|.+..+ |+- .+
T Consensus 205 ~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a----~PVL~Ge~YkAtC~vAnYYPP~Svrl 280 (490)
T PHA03271 205 NTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA----PPVLSGENYKASCIVRHFYPPGSVYV 280 (490)
T ss_pred ceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC----CccccCCCceEEEEeeeecCCCceEE
Confidence 4568999999999999775555332 2223334445544 44455533 237789999999999864 432 59
Q ss_pred EEEECCeEEEec
Q psy16425 124 TWRREGGELIAQ 135 (163)
Q Consensus 124 ~W~~~~~~~~~~ 135 (163)
.|+.||.+....
T Consensus 281 rWf~nG~~V~~~ 292 (490)
T PHA03271 281 SWRQNGNIATPR 292 (490)
T ss_pred EEEeCCccccCc
Confidence 999999876444
No 311
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.55 E-value=0.0057 Score=35.28 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=36.9
Q ss_pred EEEeCCCcEEEEeEecc--CCCCeEEEEECCeEEEecCCceEEeceEEEEcchhhhHh
Q psy16425 101 MVIREGSNVTLKCAASG--SPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 101 ~~~~~g~~~~l~C~~~~--~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~~~~~ 156 (163)
..+..|++++|.|.+.. .|.+.|.|...+...... ...+...|.+.+++..|++
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~--~~~~~ktL~~~qv~~qdSG 64 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI--LNQDKKTLNLVQLGPNDSG 64 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee--ccCCccEEEeceeCcccCC
Confidence 35778999999999965 345599999765542211 1135566788888877765
No 312
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=96.53 E-value=0.058 Score=32.78 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=32.0
Q ss_pred eEEEeeeec--cCCCEEEEEEcCCceEEeeeeeE-EecCC-eEEEEeCCCceEEEEEcccCCCCC-eEEEEEEEeCC
Q psy16425 5 MLIEIGEML--MAESTVAWLRVDTQTILTIQTHV-ITKNH-RIGVTHSETKAWYLHIREVRESDR-GWYMCQVNTDP 76 (163)
Q Consensus 5 ~~~~~~~~~--~~~~~i~W~k~~~~~~~~~~~~~-~~~~~-r~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~~~~~~ 76 (163)
+.|.|.+.+ .+...|.|++ ++..+....... ...++ .+.... .|.+.. ...|. ..|+|.+.+.+
T Consensus 24 ~tL~C~a~gF~P~~i~v~W~k-ng~~~~~~~~~~~p~~d~~ty~~~S------~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 24 VNFTCSAHGFSPRDITVKWLK-NGNELSAEQPNITPEGDSVSYNVTS------TVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred EEEEEEEeeEeCCCCEEEEEE-CCEECcccccceeeCCCCCcEEEEE------EEEEEC-ccccccCceEEEEEeCC
Confidence 455565544 3457999999 665543211111 11221 222221 444553 33443 35999996653
No 313
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.44 E-value=0.079 Score=31.30 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=31.6
Q ss_pred eeEEEeeeeccCCCEEEEEEcCCceEEee--eeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425 4 RMLIEIGEMLMAESTVAWLRVDTQTILTI--QTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP 76 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~ 76 (163)
.++|.+...-.+...|.|.+ ++..+... ........+.|.... .|.+..-. ....|+|.+...+
T Consensus 20 tL~C~a~gFyP~~I~v~W~k-ng~~~~~~~~~~~~~~~~dty~~~S------~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 20 IYLCLLENFFPDVIQVHWRE-GNSPSILGSQKSEKDKDNDVYSTTS------WLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred EEEEEEEEEeCCCeEEEEEE-CCEECcCCeEeccEecCCCEEEEEE------EEEECchh--CCCeEEEEEEECC
Confidence 34444445555677889999 55543211 111111222333222 45554332 2345999996654
No 314
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=96.40 E-value=0.04 Score=32.81 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=33.6
Q ss_pred eeEEEeeeec-cCCCE--EEEEEcCCceEEeeeeeEEec-CCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 4 RMLIEIGEML-MAEST--VAWLRVDTQTILTIQTHVITK-NHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 4 ~~~~~~~~~~-~~~~~--i~W~k~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
++.|.|...+ .|... |.||+ ++..+... .+.. ... ......+|.+..-+..|...|+|++...
T Consensus 18 ~~tL~C~v~g~~P~a~L~i~W~r-G~~~l~~~---~~~~~~~~-----~~~~~stlt~~~~r~D~g~~~sC~A~l~ 84 (100)
T cd05755 18 NYTLQCDVPGVAPRQNLTVVLLR-GNETLSRQ---PFGDNTKS-----PVNAPATITITVDREDHGANFSCETELD 84 (100)
T ss_pred cEEEEEEEcCcCCCCcEEEEEee-CCEEcccc---eeccccCC-----CceeEEEEEEecchhhCCcEEEEEEEec
Confidence 5677777655 45554 79999 55544211 0000 000 0012236676655555556899999644
No 315
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=96.32 E-value=0.015 Score=34.00 Aligned_cols=26 Identities=38% Similarity=0.925 Sum_probs=21.6
Q ss_pred CCcEEEEeEeccC-CCC-eEEEEECCeE
Q psy16425 106 GSNVTLKCAASGS-PKP-NITWRREGGE 131 (163)
Q Consensus 106 g~~~~l~C~~~~~-p~p-~v~W~~~~~~ 131 (163)
++.+.|.|.+.|+ |++ .+.|.+++..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~ 41 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGED 41 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEE
Confidence 6789999999995 554 8999999863
No 316
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=96.26 E-value=0.0051 Score=37.00 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=35.8
Q ss_pred EEeCCCcEEEEeEeccCCCCeEEEEECCe-----EEEe---c-----------CCce-EEeceEEEEcchhhhHh
Q psy16425 102 VIREGSNVTLKCAASGSPKPNITWRREGG-----ELIA---Q-----------GNGQ-EDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 102 ~~~~g~~~~l~C~~~~~p~p~v~W~~~~~-----~~~~---~-----------~~~~-~~~~~l~i~~v~~~~~~ 156 (163)
.+.+|+++.|.|.....+...++|++... .+.. . .+.. ..++.|.|.+|+++|++
T Consensus 9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G 83 (105)
T cd05774 9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTG 83 (105)
T ss_pred cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCE
Confidence 46689999999875433444899999632 1100 0 1111 14578999999999976
No 317
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.22 E-value=0.046 Score=32.66 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=31.6
Q ss_pred eEEEeeeec--cCCCEEEEEEcCCceEEeee--eeEEec----CCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 5 MLIEIGEML--MAESTVAWLRVDTQTILTIQ--THVITK----NHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 5 ~~~~~~~~~--~~~~~i~W~k~~~~~~~~~~--~~~~~~----~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
+.|.|.+.+ .+...|.|++ ++..+.... ...... ++.+.... .|.|..-...+...|+|.+...
T Consensus 19 ~tL~C~a~gFyP~~i~v~W~k-~g~~~~~~~~~~~~~~~~~~~dgTy~~~s------~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 19 ATLTCLVKGFSPSDIFVKWLQ-NGQPLSKQKYVTTAPMQEPGGNESYFLYS------KLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred eEEEEEEeeEeCCCCEEEEEE-CCEECCcccccccCcccccCCCCeEEEEE------EEEEcHHHhcCCCcEEEEeEeC
Confidence 455555544 4556789999 555432111 000010 12333222 4555443334556899999654
No 318
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.21 E-value=0.0081 Score=35.43 Aligned_cols=21 Identities=29% Similarity=0.714 Sum_probs=18.1
Q ss_pred cEEEEeEec-cCCCCeEEEEEC
Q psy16425 108 NVTLKCAAS-GSPKPNITWRRE 128 (163)
Q Consensus 108 ~~~l~C~~~-~~p~p~v~W~~~ 128 (163)
...+.|.+. |.|++.|+|+++
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~ 38 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSST 38 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcC
Confidence 467899886 789999999987
No 319
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=96.19 E-value=0.019 Score=37.94 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=40.0
Q ss_pred cEEEeCCCcEEEEeEec-cCCCCeEEEEECCeEEE----------e--cCCceE-----EeceEEEEcchhhhHh
Q psy16425 100 DMVIREGSNVTLKCAAS-GSPKPNITWRREGGELI----------A--QGNGQE-----DFPFFKRTKKKKKKKK 156 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~~~~----------~--~~~~~~-----~~~~l~i~~v~~~~~~ 156 (163)
...+.+|+++.|.|... +...+.+.|++....+. + .++... ....|+|.+|+++|.+
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeG 98 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNG 98 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCe
Confidence 45688999999999984 66678899999743221 0 011111 4478899999999975
No 320
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=96.17 E-value=0.0046 Score=35.89 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=34.6
Q ss_pred CCcEEEEeEeccCCCCeEEEEECCeEEEe--------c----------CCce-EEeceEEEEcchhhhHh
Q psy16425 106 GSNVTLKCAASGSPKPNITWRREGGELIA--------Q----------GNGQ-EDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 106 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~--------~----------~~~~-~~~~~l~i~~v~~~~~~ 156 (163)
|++|+|.|.....+...+.|+++...... . .+.. ..++.|+|.+++.+|++
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG 70 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSG 70 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcE
Confidence 78999999987766668999987532100 0 0000 13478999999999875
No 321
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.15 E-value=0.024 Score=33.35 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=24.8
Q ss_pred eCCCcEEEEeEecc-CCCC-eEEEEECCeEEEe
Q psy16425 104 REGSNVTLKCAASG-SPKP-NITWRREGGELIA 134 (163)
Q Consensus 104 ~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~~ 134 (163)
.+|+.++|.|.+.| +|+. .++|+++|..+..
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~ 44 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETE 44 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCC
Confidence 35788999999998 5654 7999999988644
No 322
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.15 E-value=0.018 Score=34.34 Aligned_cols=43 Identities=23% Similarity=0.340 Sum_probs=28.4
Q ss_pred CeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCceEeEEEEE
Q psy16425 41 HRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLEV 86 (163)
Q Consensus 41 ~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~l~v 86 (163)
.|+.+.. .+++|.|..+++.|+|.|.-++.+..+......+.|
T Consensus 62 ~r~~F~~---enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqV 104 (108)
T PF11465_consen 62 NRFNFTS---ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQV 104 (108)
T ss_dssp HHEEEET---TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEE
T ss_pred ceEeeec---cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEE
Confidence 4555544 356999999999999999999977644434444443
No 323
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.12 E-value=0.0067 Score=36.13 Aligned_cols=31 Identities=19% Similarity=0.563 Sum_probs=24.6
Q ss_pred EeCCCcEEEEeEecc-CC-CCeEEEEECCeEEE
Q psy16425 103 IREGSNVTLKCAASG-SP-KPNITWRREGGELI 133 (163)
Q Consensus 103 ~~~g~~~~l~C~~~~-~p-~p~v~W~~~~~~~~ 133 (163)
...++.+.|.|.+.| +| ...+.|++||..+.
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~ 46 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVS 46 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECc
Confidence 335678999999998 56 45799999998874
No 324
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=95.95 E-value=0.0088 Score=36.61 Aligned_cols=31 Identities=32% Similarity=0.720 Sum_probs=24.3
Q ss_pred eCCCcEEEEeEecc-CCCC-eEEEEECCeEEEe
Q psy16425 104 REGSNVTLKCAASG-SPKP-NITWRREGGELIA 134 (163)
Q Consensus 104 ~~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~~~ 134 (163)
.+++.+.|.|.+.+ +|.. .++|++|+..+..
T Consensus 16 ~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~ 48 (115)
T cd05769 16 RNKRKATLVCLATGFYPDHVSLSWKVNGKEVTD 48 (115)
T ss_pred ccCCCcEEEEEEEeEeCCCcEEEEEECCEECCC
Confidence 35677999999998 5653 7999999987643
No 325
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=95.91 E-value=0.022 Score=33.48 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=35.6
Q ss_pred EEEeCCCcEEEEeEecc-CCCCeEEEEECCeE----EEe---------cCCceE------EeceEEEEcchhhhHh
Q psy16425 101 MVIREGSNVTLKCAASG-SPKPNITWRREGGE----LIA---------QGNGQE------DFPFFKRTKKKKKKKK 156 (163)
Q Consensus 101 ~~~~~g~~~~l~C~~~~-~p~p~v~W~~~~~~----~~~---------~~~~~~------~~~~l~i~~v~~~~~~ 156 (163)
..+.+|+++.|.|.... .+...+.|++.... +.. ..+... ....|+|.+++.+|++
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG 77 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAG 77 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCE
Confidence 35678999999999765 35667999986421 110 011111 2246888899988875
No 326
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.80 E-value=0.1 Score=30.99 Aligned_cols=65 Identities=8% Similarity=0.034 Sum_probs=30.8
Q ss_pred eeEEEeeeec-cCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 4 RMLIEIGEML-MAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 4 ~~~~~~~~~~-~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
.+++.+.... .....|.|.+.++ .-..........++.|.+.. .|.+..-.-.....|+|.+.+.
T Consensus 23 tLtClV~~f~~P~~i~V~W~~~g~-~~~~~t~~~~~~dgTys~~S------~L~v~~~~W~~g~~ytC~V~H~ 88 (99)
T cd04986 23 SLTCTLSGLRDPEGAVFTWTPSGG-KEAVQTSAESDQCGCYSVSS------VLPGCAEEWNKGEPFACTVTHP 88 (99)
T ss_pred EEEEEEeccCCCCCeEEEEEECCc-cCcEEcCcccCCCCCEEEEE------EEEeCHHHhcCCCeEEEEEECC
Confidence 3444444444 4468899999443 21111111112233333332 4555532223334699999654
No 327
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.77 E-value=0.051 Score=29.50 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=26.9
Q ss_pred eeEEEeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEE
Q psy16425 4 RMLIEIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVN 73 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~ 73 (163)
.|.|.|.... ..|.|++.+ ... ...+. .+.+.+-. +++|.|+|.+.
T Consensus 9 tVtlTCP~~~---~~i~W~~n~-~~~--------~g~~~-----------~~~~~~~~-e~~G~Y~C~~~ 54 (65)
T cd07692 9 TVTVTCPLSG---DDIKWKKND-QVS--------QGSDE-----------KYLSLNHF-SSSGYYHCTAD 54 (65)
T ss_pred EEEEECCCCC---CCceEEeCC-ccC--------CCCCc-----------eEEeeccC-CCCceEEEEeC
Confidence 5778885442 228999943 322 11111 23444444 88999999983
No 328
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.75 E-value=0.043 Score=32.41 Aligned_cols=30 Identities=33% Similarity=0.646 Sum_probs=23.2
Q ss_pred EeCCCcEEEEeEeccC--CC-CeEEEEECCeEE
Q psy16425 103 IREGSNVTLKCAASGS--PK-PNITWRREGGEL 132 (163)
Q Consensus 103 ~~~g~~~~l~C~~~~~--p~-p~v~W~~~~~~~ 132 (163)
+..|+.+.|.|.+.|. |+ ..++|.++++..
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~ 43 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEP 43 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEe
Confidence 4458899999999987 43 368999997543
No 329
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=95.73 E-value=0.03 Score=32.92 Aligned_cols=28 Identities=32% Similarity=0.586 Sum_probs=22.3
Q ss_pred CCcEEEEeEecc-CCC-CeEEEEECCeEEE
Q psy16425 106 GSNVTLKCAASG-SPK-PNITWRREGGELI 133 (163)
Q Consensus 106 g~~~~l~C~~~~-~p~-p~v~W~~~~~~~~ 133 (163)
+....|.|.+.| +|. ..++|.+||..+.
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~ 44 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVT 44 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeEcc
Confidence 556799999998 564 4689999998764
No 330
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=95.62 E-value=0.054 Score=30.26 Aligned_cols=24 Identities=46% Similarity=0.839 Sum_probs=19.7
Q ss_pred EEEEeEeccC-CC-CeEEEEECCeEE
Q psy16425 109 VTLKCAASGS-PK-PNITWRREGGEL 132 (163)
Q Consensus 109 ~~l~C~~~~~-p~-p~v~W~~~~~~~ 132 (163)
+.|.|.+.|+ |+ ..+.|++++.++
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~ 27 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEV 27 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEEC
Confidence 6899999984 65 589999999863
No 331
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=95.62 E-value=0.019 Score=33.88 Aligned_cols=21 Identities=24% Similarity=0.711 Sum_probs=18.2
Q ss_pred cEEEEeEec-cCCCCeEEEEEC
Q psy16425 108 NVTLKCAAS-GSPKPNITWRRE 128 (163)
Q Consensus 108 ~~~l~C~~~-~~p~p~v~W~~~ 128 (163)
...+.|.+. |+|++.|+|+++
T Consensus 17 ~~va~C~s~~gkP~a~ItW~~~ 38 (95)
T cd05719 17 VTVATCVSANGKPPATISWETT 38 (95)
T ss_pred cEEEEEECCCCcCCCEEEEEeC
Confidence 467899985 799999999997
No 332
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.50 E-value=0.013 Score=35.08 Aligned_cols=29 Identities=28% Similarity=0.538 Sum_probs=23.2
Q ss_pred CCCcEEEEeEeccC-CCC-eEEEEECCeEEE
Q psy16425 105 EGSNVTLKCAASGS-PKP-NITWRREGGELI 133 (163)
Q Consensus 105 ~g~~~~l~C~~~~~-p~p-~v~W~~~~~~~~ 133 (163)
.|+.+.|.|.+.|+ |.. .++|++++..+.
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~ 45 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLS 45 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence 46789999999984 543 689999998764
No 333
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=95.49 E-value=0.3 Score=29.91 Aligned_cols=65 Identities=9% Similarity=0.133 Sum_probs=32.8
Q ss_pred eEEEeeeec--cCCCEEEEEEcCCceEEeeee---eEEecC-CeEEEEeCCCceEEEEEcccCCCC-CeEEEEEEEeCC
Q psy16425 5 MLIEIGEML--MAESTVAWLRVDTQTILTIQT---HVITKN-HRIGVTHSETKAWYLHIREVRESD-RGWYMCQVNTDP 76 (163)
Q Consensus 5 ~~~~~~~~~--~~~~~i~W~k~~~~~~~~~~~---~~~~~~-~r~~~~~~~~~~~~L~i~~v~~~d-~G~Y~C~~~~~~ 76 (163)
+.|.|.+.+ .....|.|++ ++..+..... .....+ +.+.... .|.|......+ ...|+|.+...+
T Consensus 21 ~tL~Cla~gFyP~~I~V~W~k-ng~~l~~g~~~~~~~~~~~~gTYs~~S------~L~v~~~~w~~~~~~ytC~V~H~g 92 (115)
T cd05769 21 ATLVCLATGFYPDHVSLSWKV-NGKEVTDGVATDPQALRENTSTYSISS------RLRVSATEWFNPRNTFTCIVQFYG 92 (115)
T ss_pred cEEEEEEEeEeCCCcEEEEEE-CCEECCCCcccccceecCCCCeEEEEE------EEEEChHHhccCCCeEEEEEEEeC
Confidence 444554443 4456899999 5544321100 011111 2233222 56666554433 568999996554
No 334
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=95.39 E-value=0.025 Score=33.42 Aligned_cols=52 Identities=17% Similarity=0.103 Sum_probs=34.5
Q ss_pred CCCcEEEEeEecc-CCCCeEEEEECCeEEEecCC-----------------ceE--EeceEEEEcchhhhHh
Q psy16425 105 EGSNVTLKCAASG-SPKPNITWRREGGELIAQGN-----------------GQE--DFPFFKRTKKKKKKKK 156 (163)
Q Consensus 105 ~g~~~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~-----------------~~~--~~~~l~i~~v~~~~~~ 156 (163)
.|++|+|.|.... .....+.|++....+..... ... ....|+|.+++.+|++
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG 74 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAG 74 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCE
Confidence 5999999998754 44557999987543321111 000 2367999999999875
No 335
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.38 E-value=0.22 Score=29.36 Aligned_cols=64 Identities=9% Similarity=0.123 Sum_probs=31.8
Q ss_pred eEEEeeeec--cCCCEEEEEEcCCceEEee--e-eeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425 5 MLIEIGEML--MAESTVAWLRVDTQTILTI--Q-THVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDP 76 (163)
Q Consensus 5 ~~~~~~~~~--~~~~~i~W~k~~~~~~~~~--~-~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~ 76 (163)
+.|.|.+.+ .+...|.|++ ++.. ... . ......++.+.... .|.+....-.....|+|.+...+
T Consensus 19 ~~L~C~a~gFyP~~i~vtW~k-~g~~-~~~~~~~~~~~~~dgty~~~s------~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 19 VTLGCLATGFLPEPVTFTWNS-GSNS-TSGVKTYPAVLQSGGLYTASS------QLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred EEEEEEEeeEECCCcEEEEeE-CCEE-CCCcEECCCEeCCCCCEEEEE------EEEEeHHHcCCCCcEEEEEEeCC
Confidence 455555544 4567889999 5554 111 0 01111133333222 45555433223567999996543
No 336
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=95.32 E-value=0.034 Score=32.62 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=22.8
Q ss_pred CCCcEEEEeEecc-CCC-CeEEEEECCeEEE
Q psy16425 105 EGSNVTLKCAASG-SPK-PNITWRREGGELI 133 (163)
Q Consensus 105 ~g~~~~l~C~~~~-~p~-p~v~W~~~~~~~~ 133 (163)
.|....|.|.+.| +|+ ..++|.+||..+.
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~ 44 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP 44 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC
Confidence 4666799999998 453 3689999998864
No 337
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.13 E-value=0.065 Score=32.02 Aligned_cols=29 Identities=24% Similarity=0.567 Sum_probs=23.9
Q ss_pred cEEEeCCCcEEEEeEeccCC-CCeEEEEEC
Q psy16425 100 DMVIREGSNVTLKCAASGSP-KPNITWRRE 128 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p-~p~v~W~~~ 128 (163)
...+.+|+++.|.|.+.+.. ...+.|++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq 38 (106)
T cd04980 9 TLSVSPGESATISCKASQSVSSNYLAWYQQ 38 (106)
T ss_pred cEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence 56788999999999987655 567999975
No 338
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=95.09 E-value=0.071 Score=31.99 Aligned_cols=28 Identities=29% Similarity=0.580 Sum_probs=21.5
Q ss_pred EEeCCCcEEEEeEeccC-CCCeEEEEECC
Q psy16425 102 VIREGSNVTLKCAASGS-PKPNITWRREG 129 (163)
Q Consensus 102 ~~~~g~~~~l~C~~~~~-p~p~v~W~~~~ 129 (163)
.+.+|++++|.|...+. ....+.|++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~ 30 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWR 30 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEEC
Confidence 46789999999998753 34579999753
No 339
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=95.01 E-value=0.033 Score=32.89 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=22.3
Q ss_pred CCcEEEEeEecc-CCC-CeEEEEECCeEEE
Q psy16425 106 GSNVTLKCAASG-SPK-PNITWRREGGELI 133 (163)
Q Consensus 106 g~~~~l~C~~~~-~p~-p~v~W~~~~~~~~ 133 (163)
+..++|.|.+.+ +|. ..++|.++|..+.
T Consensus 16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~ 45 (96)
T cd07697 16 QGQGIYLCLLENFFPDVIQVHWREGNSPSI 45 (96)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence 567899999998 454 3689999998753
No 340
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=94.98 E-value=0.11 Score=30.50 Aligned_cols=27 Identities=26% Similarity=0.604 Sum_probs=22.2
Q ss_pred CCcEEEEeEecc-CCC-CeEEEEECCeEE
Q psy16425 106 GSNVTLKCAASG-SPK-PNITWRREGGEL 132 (163)
Q Consensus 106 g~~~~l~C~~~~-~p~-p~v~W~~~~~~~ 132 (163)
.+.+.|.|.+.| +|. ..++|.++|..+
T Consensus 14 ~~~~~L~C~a~gFyP~~I~vtW~~dg~~~ 42 (94)
T cd05847 14 SETIQLLCLISGYTPGTIEVEWLVDGQVA 42 (94)
T ss_pred CCCEEEEEEEEeEECCCCEEEEEECCEEC
Confidence 466899999998 565 579999999876
No 341
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=94.88 E-value=0.11 Score=38.49 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=37.3
Q ss_pred ceEEEEEcccCCCCCeEEEEEEEeCCCceEeEEEEEEcCCccc
Q psy16425 51 KAWYLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDIL 93 (163)
Q Consensus 51 ~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~ 93 (163)
...++.+.|++..|+|.|.|.+.-....+.+-.+.+.+.|.+.
T Consensus 79 keYsf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVmPKId 121 (500)
T PHA02914 79 KEYSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKAPKID 121 (500)
T ss_pred ceeEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEcccee
Confidence 4578999999999999999999777777888889999888775
No 342
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=94.78 E-value=0.063 Score=28.24 Aligned_cols=48 Identities=29% Similarity=0.448 Sum_probs=32.6
Q ss_pred EEEEeEeccCCCCeEEEEECCeEEEecCC--------ceEEeceEEEEcchhhhHh
Q psy16425 109 VTLKCAASGSPKPNITWRREGGELIAQGN--------GQEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 109 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~--------~~~~~~~l~i~~v~~~~~~ 156 (163)
+.|.|.+.+.+.+.+.|++++........ .......|.|.+++.+|.+
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g 56 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSG 56 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCc
Confidence 36899998877888999998866433221 1234566788877776654
No 343
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=94.68 E-value=0.12 Score=31.38 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=32.0
Q ss_pred CCCcEEEEeEeccCC------------CCeEEEEECC--e--EEEe----------c--CCce-------EEeceEEEEc
Q psy16425 105 EGSNVTLKCAASGSP------------KPNITWRREG--G--ELIA----------Q--GNGQ-------EDFPFFKRTK 149 (163)
Q Consensus 105 ~g~~~~l~C~~~~~p------------~p~v~W~~~~--~--~~~~----------~--~~~~-------~~~~~l~i~~ 149 (163)
.|++++|.|...... .+.|.|++.. . .+.. . ++.. .....|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 388999999886432 3589999742 1 1110 0 1111 1356889999
Q ss_pred chhhhHh
Q psy16425 150 KKKKKKK 156 (163)
Q Consensus 150 v~~~~~~ 156 (163)
++..|.+
T Consensus 81 l~~sDsG 87 (112)
T cd05900 81 LRSNDSG 87 (112)
T ss_pred cccccCE
Confidence 9888864
No 344
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=94.67 E-value=0.14 Score=31.07 Aligned_cols=29 Identities=31% Similarity=0.591 Sum_probs=23.0
Q ss_pred cEEEeCCCcEEEEeEeccC-CCCeEEEEEC
Q psy16425 100 DMVIREGSNVTLKCAASGS-PKPNITWRRE 128 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~-p~p~v~W~~~ 128 (163)
...+.+|+++.|.|..... ....+.|++.
T Consensus 8 ~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq 37 (116)
T cd07706 8 DVSVQVGEEVTLNCRYETSWTNYYIFWYKQ 37 (116)
T ss_pred ceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence 5678899999999998653 4567999974
No 345
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=94.66 E-value=0.089 Score=29.94 Aligned_cols=28 Identities=46% Similarity=0.894 Sum_probs=23.0
Q ss_pred CCCcEEEEeEecc-CCCC-eEEEEECCeEE
Q psy16425 105 EGSNVTLKCAASG-SPKP-NITWRREGGEL 132 (163)
Q Consensus 105 ~g~~~~l~C~~~~-~p~p-~v~W~~~~~~~ 132 (163)
.++.+.|.|.+.+ +|.. .+.|++++..+
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~ 36 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEV 36 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEE
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEecccee
Confidence 3788999999997 5654 69999999875
No 346
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=94.64 E-value=0.12 Score=30.59 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=24.0
Q ss_pred EeCCCcEEEEeEecc-CCC--CeEEEEECCeEEE
Q psy16425 103 IREGSNVTLKCAASG-SPK--PNITWRREGGELI 133 (163)
Q Consensus 103 ~~~g~~~~l~C~~~~-~p~--p~v~W~~~~~~~~ 133 (163)
+.+|..+++.|.+.+ +|. ..+.|++....+.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~ 45 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLP 45 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceec
Confidence 567999999999975 565 5699998765543
No 347
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=94.27 E-value=0.62 Score=27.57 Aligned_cols=60 Identities=15% Similarity=0.013 Sum_probs=35.8
Q ss_pred EeeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 8 EIGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 8 ~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
++...+-|.+.|.|+....... . .......++.+.+.. .|.+...+..|.-.++|.+...
T Consensus 24 C~sa~gkPaa~IsW~~~~~G~~-~-~~~~~~~ngT~TV~S------~~~l~p~r~d~G~~vtC~V~H~ 83 (97)
T cd07704 24 CCAAEGRPAADVTWETNVYGTS-E-SHSQEHPNGTTTVTS------EYIWVPSRHANGHPLTCVVSHP 83 (97)
T ss_pred EEccCCccCCEeEEeCCCCCcc-c-eeeecCCCCCEEEEE------EEEEEeCHHHCCcEEEEEEeCc
Confidence 4556788999999998422211 1 111112233443333 5677666677878899999654
No 348
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=94.24 E-value=0.26 Score=29.37 Aligned_cols=24 Identities=42% Similarity=0.749 Sum_probs=19.0
Q ss_pred CCCcEEEEeEeccCC------CCeEEEEEC
Q psy16425 105 EGSNVTLKCAASGSP------KPNITWRRE 128 (163)
Q Consensus 105 ~g~~~~l~C~~~~~p------~p~v~W~~~ 128 (163)
.|++++|.|.....+ .+.+.|++.
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~ 30 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKL 30 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEe
Confidence 388999999987543 458999986
No 349
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=93.79 E-value=0.32 Score=29.59 Aligned_cols=29 Identities=34% Similarity=0.618 Sum_probs=21.3
Q ss_pred cEEEeCCCcEEEEeEeccCC----CCeEEEEEC
Q psy16425 100 DMVIREGSNVTLKCAASGSP----KPNITWRRE 128 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p----~p~v~W~~~ 128 (163)
...+.+|++++|.|...... ...+.|++.
T Consensus 7 ~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~ 39 (116)
T cd05715 7 EVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQ 39 (116)
T ss_pred eEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEe
Confidence 56678899999999875432 245999763
No 350
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=93.54 E-value=0.13 Score=30.26 Aligned_cols=28 Identities=21% Similarity=0.574 Sum_probs=21.8
Q ss_pred EEeCCCcEEEEeEeccC--CCCeEEEEECC
Q psy16425 102 VIREGSNVTLKCAASGS--PKPNITWRREG 129 (163)
Q Consensus 102 ~~~~g~~~~l~C~~~~~--p~p~v~W~~~~ 129 (163)
.+.+|+++.|.|...+. ....+.|++..
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~ 31 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQK 31 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEEC
Confidence 35689999999998764 45679998754
No 351
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=93.33 E-value=0.19 Score=29.55 Aligned_cols=26 Identities=35% Similarity=0.694 Sum_probs=21.3
Q ss_pred CCcEEEEeEeccC-CC-CeEEEEECCeE
Q psy16425 106 GSNVTLKCAASGS-PK-PNITWRREGGE 131 (163)
Q Consensus 106 g~~~~l~C~~~~~-p~-p~v~W~~~~~~ 131 (163)
++.+.|.|.+.++ |. ..++|.++|..
T Consensus 16 ~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 16 SDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 5678999999984 54 36899999986
No 352
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=93.29 E-value=0.36 Score=29.56 Aligned_cols=57 Identities=19% Similarity=0.209 Sum_probs=35.6
Q ss_pred cEEEeCCCcEEEEeEeccC----CCCeEEEEE---------------CCeEEEec-----CCce------EEeceEEEEc
Q psy16425 100 DMVIREGSNVTLKCAASGS----PKPNITWRR---------------EGGELIAQ-----GNGQ------EDFPFFKRTK 149 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~----p~p~v~W~~---------------~~~~~~~~-----~~~~------~~~~~l~i~~ 149 (163)
...+..|+++.|.|..... +...+.|.. ++...... ++.. ..+..|.|.+
T Consensus 7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n 86 (116)
T cd05879 7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN 86 (116)
T ss_pred eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence 5567789999999998653 345799933 33322101 1111 1446788888
Q ss_pred chhhhHh
Q psy16425 150 KKKKKKK 156 (163)
Q Consensus 150 v~~~~~~ 156 (163)
++..|.+
T Consensus 87 v~~sD~G 93 (116)
T cd05879 87 LDYTDNG 93 (116)
T ss_pred CCcccCE
Confidence 8888875
No 353
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=93.19 E-value=0.34 Score=29.30 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=17.9
Q ss_pred CCcEEEEeEeccCC----------CCeEEEEEC
Q psy16425 106 GSNVTLKCAASGSP----------KPNITWRRE 128 (163)
Q Consensus 106 g~~~~l~C~~~~~p----------~p~v~W~~~ 128 (163)
|++++|.|.....+ ...+.|++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~ 34 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKL 34 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEe
Confidence 88999999987543 246999985
No 354
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=93.18 E-value=0.51 Score=28.73 Aligned_cols=29 Identities=34% Similarity=0.571 Sum_probs=21.5
Q ss_pred CcEEEeCCCcEEEEeEeccCC----CCeEEEEE
Q psy16425 99 TDMVIREGSNVTLKCAASGSP----KPNITWRR 127 (163)
Q Consensus 99 ~~~~~~~g~~~~l~C~~~~~p----~p~v~W~~ 127 (163)
..+.+.+|+++.|.|.....+ ...+.|++
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~ 38 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNF 38 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEE
Confidence 366788999999999975432 23599974
No 355
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=92.44 E-value=0.25 Score=29.47 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=21.0
Q ss_pred EeCCCcEEEEeEeccCCCCeEEEEECC
Q psy16425 103 IREGSNVTLKCAASGSPKPNITWRREG 129 (163)
Q Consensus 103 ~~~g~~~~l~C~~~~~p~p~v~W~~~~ 129 (163)
+.+|++++|.|.........+.|++..
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~ 29 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQP 29 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeC
Confidence 567999999999865545569999754
No 356
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=92.44 E-value=0.32 Score=28.37 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=30.5
Q ss_pred CcEEEEeEeccCC---CCeEEEEECCeE---E---E---------e--cCCceE-----EeceEEEEcchhhhHh
Q psy16425 107 SNVTLKCAASGSP---KPNITWRREGGE---L---I---------A--QGNGQE-----DFPFFKRTKKKKKKKK 156 (163)
Q Consensus 107 ~~~~l~C~~~~~p---~p~v~W~~~~~~---~---~---------~--~~~~~~-----~~~~l~i~~v~~~~~~ 156 (163)
+++.|.|.....+ ...+.|++.... . . . ..+... ....|+|.+|+.+|++
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G 75 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEG 75 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCE
Confidence 4689999887543 346999986531 0 0 0 000000 2468899999988875
No 357
>PHA02982 hypothetical protein; Provisional
Probab=92.36 E-value=2.5 Score=28.80 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=41.4
Q ss_pred ceEEEEEcccCCCCCeEEEEEEEeCCCce--EeEEEEEEcCCcccccCCCCcEEEeCCC-cEEEEeEeccCCCCeEEEEE
Q psy16425 51 KAWYLHIREVRESDRGWYMCQVNTDPMKS--QVGYLEVVVPPDILDYPTSTDMVIREGS-NVTLKCAASGSPKPNITWRR 127 (163)
Q Consensus 51 ~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~--~~~~l~v~~~p~~~~~~~~~~~~~~~g~-~~~l~C~~~~~p~p~v~W~~ 127 (163)
.+++|+|..+.++..|.|+|.+....... ...-|.++... +.. ...++. .-.+.|-+...-.+-..|.-
T Consensus 98 ~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~-V~~-------~W~e~nNeT~V~CyVgS~~~dvp~W~V 169 (251)
T PHA02982 98 NSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKED-ILY-------VVEEHNNETIITCFVGSKHGDVPRFIV 169 (251)
T ss_pred cceeEEeccCCcccCCceEEEEecCCCchheeheeeeEecce-EEE-------EEEecCCeEEEEEEEEeccCCCccEEE
Confidence 45699999999999999999996543222 23334443211 111 111222 34568887544333228887
Q ss_pred CCe
Q psy16425 128 EGG 130 (163)
Q Consensus 128 ~~~ 130 (163)
+|-
T Consensus 170 ~GV 172 (251)
T PHA02982 170 AGI 172 (251)
T ss_pred eeE
Confidence 764
No 358
>KOG4597|consensus
Probab=92.14 E-value=0.26 Score=37.29 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=42.0
Q ss_pred ceeEEEeeeeccCCCEEEEEEcC--CceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 3 ARMLIEIGEMLMAESTVAWLRVD--TQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~W~k~~--~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
..+...|+..+.+.+.|+|.+.- +..+.-- ... .-++..+. ...-|.|.+....|+|.|+|.+.+.
T Consensus 212 etcS~tCg~~G~q~r~V~c~qv~anr~~vv~~-~nq--~~e~p~vt----stcql~ic~ewq~~a~w~tCs~rcg 279 (560)
T KOG4597|consen 212 ETCSSTCGVQGRQYRVVTCEQVFANRENVVMR-PNQ--TVENPVVT----STCQLVICNEWQADAGWYTCSARCG 279 (560)
T ss_pred hhhcccccccCCcCceeeeehhhccccceeec-Ccc--ccCCccee----eeeeEEEcchhhcCCCceeeccccc
Confidence 35677899999999999998752 2111100 000 00111111 2347899999999999999999554
No 359
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=91.85 E-value=0.7 Score=27.09 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=15.9
Q ss_pred CCcEEEEeEeccCC---CCeEEEEECC
Q psy16425 106 GSNVTLKCAASGSP---KPNITWRREG 129 (163)
Q Consensus 106 g~~~~l~C~~~~~p---~p~v~W~~~~ 129 (163)
|+++.|.|...... ...+.|++..
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~ 27 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQ 27 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECC
Confidence 67899999875321 1257787754
No 360
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=91.73 E-value=0.24 Score=29.48 Aligned_cols=27 Identities=41% Similarity=0.866 Sum_probs=21.6
Q ss_pred CCCcEEEEeEecc-C-CC-CeEEEEECCeE
Q psy16425 105 EGSNVTLKCAASG-S-PK-PNITWRREGGE 131 (163)
Q Consensus 105 ~g~~~~l~C~~~~-~-p~-p~v~W~~~~~~ 131 (163)
.+..+.|.|.+.+ + |. ..|.|.++++.
T Consensus 18 ~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 18 LGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred cCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 5788999999988 4 53 36999999865
No 361
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=91.43 E-value=0.64 Score=28.39 Aligned_cols=30 Identities=27% Similarity=0.626 Sum_probs=22.8
Q ss_pred cEEEeCCCcEEEEeEeccCC--CCeEEEEECC
Q psy16425 100 DMVIREGSNVTLKCAASGSP--KPNITWRREG 129 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p--~p~v~W~~~~ 129 (163)
...+.+|++++|.|.....- ...+.|++..
T Consensus 6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~ 37 (117)
T cd04981 6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQA 37 (117)
T ss_pred CeEEcCCCCEEEEEEEeCCCcccceEEEEEEC
Confidence 56788999999999876432 4569999743
No 362
>KOG1480|consensus
Probab=91.33 E-value=0.079 Score=42.30 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=36.4
Q ss_pred eeeeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 9 IGEMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 9 ~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
+...+.|...+.|++ ++..+.. +..+..... ..|.|..+...|+|+|+|.+.+.
T Consensus 152 r~pe~~paae~~w~k-~e~~~~p--------d~n~~~~~d----~~li~~~arlsd~~nytc~a~ni 205 (909)
T KOG1480|consen 152 RPPEGDPKAEVEWLK-NEVVIDP--------DANVIRASD----HNLIISQARLSDSGNYTCEATNI 205 (909)
T ss_pred cCcccchhhhhhccc-cCCCCCc--------cccchhhhc----CCccccchhhhhcccceeeeehh
Confidence 345667778889999 5555432 111111222 26899999999999999999665
No 363
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=91.29 E-value=0.51 Score=27.64 Aligned_cols=24 Identities=33% Similarity=0.663 Sum_probs=17.0
Q ss_pred CCcEEEEeEeccCCC-CeEEEEECC
Q psy16425 106 GSNVTLKCAASGSPK-PNITWRREG 129 (163)
Q Consensus 106 g~~~~l~C~~~~~p~-p~v~W~~~~ 129 (163)
|++++|.|....... -.+.|++..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~ 25 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQ 25 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcC
Confidence 788999998654332 269999753
No 364
>PHA03042 CD47-like protein; Provisional
Probab=90.78 E-value=4.5 Score=28.69 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=32.7
Q ss_pred eeEEEeeeecc-----CCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425 4 RMLIEIGEMLM-----AESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT 74 (163)
Q Consensus 4 ~~~~~~~~~~~-----~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~ 74 (163)
.++++|..... ....+.|.. ++..+...++. ...+|.+..... =.|+|+|++.+
T Consensus 33 TV~IpC~v~n~~~~ni~~~~V~Wkf-~~~~If~~n~t---------------n~aSL~~~f~~~-l~GNYTCEv~~ 91 (286)
T PHA03042 33 TIVIVCNLNLLIYYNISNIHINWKF-NNKVIFKKNNT---------------NTSSLKFNFSKN-LSGNYTCEAIN 91 (286)
T ss_pred eEEEEeecCChhhcCccceEEEEEe-CCeeEEEecCC---------------cceEEEEecccc-CCCceeEEEee
Confidence 46667765543 466789998 56665433211 112666655443 36999999954
No 365
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=90.59 E-value=1.1 Score=27.21 Aligned_cols=15 Identities=0% Similarity=-0.113 Sum_probs=12.2
Q ss_pred eceEEEEcchhhhHh
Q psy16425 142 FPFFKRTKKKKKKKK 156 (163)
Q Consensus 142 ~~~l~i~~v~~~~~~ 156 (163)
...|.|.+++.+|.+
T Consensus 71 ~asL~i~nv~~~D~G 85 (110)
T cd05902 71 NASLVLSRLRYSDSG 85 (110)
T ss_pred eEEEEECCCCHHHCE
Confidence 468899999998875
No 366
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=89.97 E-value=0.88 Score=26.91 Aligned_cols=30 Identities=33% Similarity=0.719 Sum_probs=24.3
Q ss_pred CcEEEeCCCcEEEEeEec-cCCCCeEEEEEC
Q psy16425 99 TDMVIREGSNVTLKCAAS-GSPKPNITWRRE 128 (163)
Q Consensus 99 ~~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~ 128 (163)
....+.+|+++.|.|... ......+.|++.
T Consensus 9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~ 39 (114)
T PF07686_consen 9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYRQ 39 (114)
T ss_dssp SEEEEETTSEEEEEEEEESSSSGSEEEEEEE
T ss_pred CeEEEecCCCEEEEEEEeCCCCcceEEEEEE
Confidence 356788999999999998 445668999984
No 367
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=89.20 E-value=2.7 Score=23.88 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=17.3
Q ss_pred EEEEcccCCCCCeEEEEEEEe
Q psy16425 54 YLHIREVRESDRGWYMCQVNT 74 (163)
Q Consensus 54 ~L~i~~v~~~d~G~Y~C~~~~ 74 (163)
.+.......+|+|.+.|.+..
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~ 64 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASD 64 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcC
Confidence 566777888999999999943
No 368
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=88.60 E-value=8.7 Score=28.94 Aligned_cols=73 Identities=21% Similarity=0.229 Sum_probs=43.4
Q ss_pred ceEEEEEcccCCCCCeEEEEEEEeCCCceE--eEEEEEEcCCcccccCCCCcEEEeCCCc-EEEEeEecc--CCCCeEEE
Q psy16425 51 KAWYLHIREVRESDRGWYMCQVNTDPMKSQ--VGYLEVVVPPDILDYPTSTDMVIREGSN-VTLKCAASG--SPKPNITW 125 (163)
Q Consensus 51 ~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~--~~~l~v~~~p~~~~~~~~~~~~~~~g~~-~~l~C~~~~--~p~p~v~W 125 (163)
.+++|+|..+..+..|.|.|.+... .... ..-|-|...-.+.+ ..+|.. -...|-+.. ..++.+.|
T Consensus 344 k~STLTIkka~I~N~GCY~~~a~~g-~~~~ec~~Cl~V~d~V~f~W--------~~e~~n~T~V~Cyv~sy~~kp~si~w 414 (500)
T PHA02914 344 KNSTLTIKKAHINNAGCYEAQAFMG-KFKEECRHCFKVADHVFFKW--------NTEGDNETKVACYAAQYDMQPFSILW 414 (500)
T ss_pred hhceEEeeeEEEEcCCceEEEEecC-cchhhhhhheEeccEEEEEE--------EeccCceEEEEEEEEecccCCceeEE
Confidence 5679999999999999999999433 2222 11222211111111 112333 346787754 35667999
Q ss_pred EECCeEE
Q psy16425 126 RREGGEL 132 (163)
Q Consensus 126 ~~~~~~~ 132 (163)
.-+|...
T Consensus 415 kvnGV~~ 421 (500)
T PHA02914 415 KSNGVSF 421 (500)
T ss_pred EEccEEe
Confidence 9988654
No 369
>PHA03052 Hypothetical protein; Provisional
Probab=87.89 E-value=3 Score=22.79 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=26.2
Q ss_pred cEEEeCCCcEEEEeEec-cCC--CCeEEEEECCeEEE
Q psy16425 100 DMVIREGSNVTLKCAAS-GSP--KPNITWRREGGELI 133 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~-~~p--~p~v~W~~~~~~~~ 133 (163)
...+..|..+.+.|.+. |.| .+.+.|..|+....
T Consensus 6 ~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 6 GIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred cEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 45567799999999986 443 45699999988773
No 370
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=87.13 E-value=1.3 Score=26.32 Aligned_cols=25 Identities=36% Similarity=0.667 Sum_probs=19.0
Q ss_pred CCCcEEEEeEeccCC------CCeEEEEECC
Q psy16425 105 EGSNVTLKCAASGSP------KPNITWRREG 129 (163)
Q Consensus 105 ~g~~~~l~C~~~~~p------~p~v~W~~~~ 129 (163)
.|++++|.|.....| ...+.|++..
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~ 31 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLE 31 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEec
Confidence 488999999876553 3469999864
No 371
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=83.85 E-value=4.2 Score=24.98 Aligned_cols=15 Identities=7% Similarity=-0.104 Sum_probs=12.4
Q ss_pred eceEEEEcchhhhHh
Q psy16425 142 FPFFKRTKKKKKKKK 156 (163)
Q Consensus 142 ~~~l~i~~v~~~~~~ 156 (163)
...|.|.+++..|++
T Consensus 78 ~asL~i~~v~~sD~G 92 (117)
T cd05901 78 DASLTIVKLRASDAG 92 (117)
T ss_pred ceEEEEcccccccCE
Confidence 478999999988875
No 372
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=83.43 E-value=3.8 Score=24.99 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=21.6
Q ss_pred cEEEeCCCcEEEEeEeccCC------CCeEEEEECC
Q psy16425 100 DMVIREGSNVTLKCAASGSP------KPNITWRREG 129 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p------~p~v~W~~~~ 129 (163)
...+.+|+.++|.|.-...+ ...+.|++..
T Consensus 8 ~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~ 43 (119)
T cd05712 8 SVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGH 43 (119)
T ss_pred EEEEeccccEEEEEEeeCcccccCCCceEEEEEeCC
Confidence 56788999999999764221 2358999753
No 373
>PHA03240 envelope glycoprotein M; Provisional
Probab=82.11 E-value=4.7 Score=27.48 Aligned_cols=21 Identities=29% Similarity=0.200 Sum_probs=17.5
Q ss_pred eEEEEEcccCCCCCeEEEEEE
Q psy16425 52 AWYLHIREVRESDRGWYMCQV 72 (163)
Q Consensus 52 ~~~L~i~~v~~~d~G~Y~C~~ 72 (163)
+++|.|.+|..+|.|+|.-..
T Consensus 104 NstL~i~~vn~sd~~nYcr~k 124 (258)
T PHA03240 104 NSTLIIAHLNLSDAGEYCRKK 124 (258)
T ss_pred cceEEEEEEeecCcchhhhcc
Confidence 348999999999999995544
No 374
>PHA03282 envelope glycoprotein E; Provisional
Probab=81.01 E-value=5.7 Score=30.44 Aligned_cols=47 Identities=32% Similarity=0.500 Sum_probs=30.9
Q ss_pred CCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEeCCCc-eEeEEEEEEcCCc
Q psy16425 40 NHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNTDPMK-SQVGYLEVVVPPD 91 (163)
Q Consensus 40 ~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~-~~~~~l~v~~~p~ 91 (163)
..|+.+... +|.|.+++.+|+|.|+-.+...+.. .....+.+.+.|.
T Consensus 116 ~~rvs~~n~-----tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~p~ 163 (540)
T PHA03282 116 PPRVAVVNG-----TLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVGPR 163 (540)
T ss_pred CcceeEecc-----eEEEeeccccCCceEEEEecCCCCchhheEEEEEEecCC
Confidence 455555532 7999999999999999998544332 2333444455443
No 375
>PHA03282 envelope glycoprotein E; Provisional
Probab=77.60 E-value=7.2 Score=29.93 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=22.2
Q ss_pred ceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425 51 KAWYLHIREVRESDRGWYMCQVNTDP 76 (163)
Q Consensus 51 ~~~~L~i~~v~~~d~G~Y~C~~~~~~ 76 (163)
.+..|.+.|+..+++|.|.|.+...+
T Consensus 331 n~VdL~F~nAp~saSGLYVfVl~yNG 356 (540)
T PHA03282 331 HTVNLQLRDASEASGGLYVCVVYVNG 356 (540)
T ss_pred CccceEecCCCcccCceEEEEEEECC
Confidence 44589999999999999999996554
No 376
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=74.53 E-value=9.4 Score=29.31 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=17.9
Q ss_pred EEEEEcccCCCCCeEEEEEEEeCC
Q psy16425 53 WYLHIREVRESDRGWYMCQVNTDP 76 (163)
Q Consensus 53 ~~L~i~~v~~~d~G~Y~C~~~~~~ 76 (163)
..|++.|+...++|.|.|.+...+
T Consensus 269 ~~l~f~~a~~~~sGLYv~V~~~ng 292 (439)
T PF02480_consen 269 VDLQFTNAPESASGLYVFVVYYNG 292 (439)
T ss_dssp SSEEESS--GGG-EEEEEEEEETT
T ss_pred cceEecCCCcccCceEEEEEEECC
Confidence 379999999999999999996554
No 377
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=74.01 E-value=9.1 Score=20.69 Aligned_cols=49 Identities=27% Similarity=0.363 Sum_probs=27.6
Q ss_pred eCCCcEEEEeEeccCCCCeEEEEE---CC--eEEEecCCc-------eEEeceEEEEcchhhhHh
Q psy16425 104 REGSNVTLKCAASGSPKPNITWRR---EG--GELIAQGNG-------QEDFPFFKRTKKKKKKKK 156 (163)
Q Consensus 104 ~~g~~~~l~C~~~~~p~p~v~W~~---~~--~~~~~~~~~-------~~~~~~l~i~~v~~~~~~ 156 (163)
..|..++|. |-|...++|++ ++ ..+-..... .-++..|+|-+|++.+.+
T Consensus 3 ~~G~N~TL~----Gp~~~~V~Wy~~~~~~~~~~lC~g~~~~~~~l~~tCn~qNLTLinVt~~~~G 63 (63)
T PF02440_consen 3 TVGSNVTLV----GPPDGPVTWYKFHSDGDFKKLCNGNKTKHPELNHTCNGQNLTLINVTKTYNG 63 (63)
T ss_pred eEcCcEEEe----CCCCCceEEEEecCCCCccccCCCCCccccceEeEecCCeEEEEEecccccC
Confidence 346666655 43445799982 12 222211111 126678999999987753
No 378
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=73.80 E-value=14 Score=21.10 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=17.0
Q ss_pred cEEEEeEeccCCCCeEEEEECCeEE
Q psy16425 108 NVTLKCAASGSPKPNITWRREGGEL 132 (163)
Q Consensus 108 ~~~l~C~~~~~p~p~v~W~~~~~~~ 132 (163)
...|.+.+.+. .+.+.|+-|+..+
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~ 54 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPL 54 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEc
Confidence 34555555554 4499999999988
No 379
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=73.58 E-value=3.1 Score=31.83 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=12.5
Q ss_pred EEEEcccCCCCCeEEEEEEEeCCCceEeE--EEEEEcCCcc--------cccC----------CCCcEEEeCCCcEEEEe
Q psy16425 54 YLHIREVRESDRGWYMCQVNTDPMKSQVG--YLEVVVPPDI--------LDYP----------TSTDMVIREGSNVTLKC 113 (163)
Q Consensus 54 ~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~--~l~v~~~p~~--------~~~~----------~~~~~~~~~g~~~~l~C 113 (163)
.|.|.+++.+|+|.|+-...+........ .|.|..+... ...+ .........|+++.+.-
T Consensus 90 ~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~~v 169 (439)
T PF02480_consen 90 GLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHLSV 169 (439)
T ss_dssp --------------------------------------------------------SEEEEEE--SEEE--TT--EE---
T ss_pred ceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEEeE
Confidence 69999999999999999986554333322 3333321111 0111 11245556788887766
Q ss_pred Eecc--CC-C---CeEEEEEC
Q psy16425 114 AASG--SP-K---PNITWRRE 128 (163)
Q Consensus 114 ~~~~--~p-~---p~v~W~~~ 128 (163)
.... .. . .++.|+.-
T Consensus 170 ~l~~~~~d~~~f~~~i~W~~~ 190 (439)
T PF02480_consen 170 HLQSEAHDDPPFSLEIDWYYM 190 (439)
T ss_dssp EEEEEESSS--EEEEEEEEEE
T ss_pred EEEeccCCCCCeeEEEEEEEe
Confidence 6542 22 2 26889863
No 380
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=73.49 E-value=11 Score=23.11 Aligned_cols=29 Identities=7% Similarity=0.063 Sum_probs=21.3
Q ss_pred cEEEeCCCcEEEEeEeccCCC---CeEEEEEC
Q psy16425 100 DMVIREGSNVTLKCAASGSPK---PNITWRRE 128 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~---p~v~W~~~ 128 (163)
...+..|+.+.|.|...|.-. -.++|.+.
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq 38 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKG 38 (115)
T ss_pred CeEEcCCCCEEEEEEecCCccccEEEEEEEEe
Confidence 456677889999999977432 35888874
No 381
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=72.08 E-value=27 Score=25.84 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=12.5
Q ss_pred ccCCCCCeEEEEEEEeCC
Q psy16425 59 EVRESDRGWYMCQVNTDP 76 (163)
Q Consensus 59 ~v~~~d~G~Y~C~~~~~~ 76 (163)
.+...+...|+|.+...+
T Consensus 287 ~v~~~~~~~Y~C~V~Hsg 304 (338)
T PHA02865 287 RVPTDMSNQIVCVVFHST 304 (338)
T ss_pred EeCCCCCCCcEEEEEeCC
Confidence 345667777999996554
No 382
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=71.42 E-value=15 Score=21.28 Aligned_cols=33 Identities=30% Similarity=0.573 Sum_probs=23.0
Q ss_pred cEEEeCCCcEEEEeEecc-----CCCCeEEEEECCeEE
Q psy16425 100 DMVIREGSNVTLKCAASG-----SPKPNITWRREGGEL 132 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~-----~p~p~v~W~~~~~~~ 132 (163)
...+..|++++..|.... .....+.|..++..+
T Consensus 12 ~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i 49 (89)
T PF06328_consen 12 SPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI 49 (89)
T ss_dssp SSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES
T ss_pred CCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC
Confidence 345778999999999852 245679999988743
No 383
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=70.25 E-value=10 Score=27.99 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=17.1
Q ss_pred cEEEEeEeccC-CC-CeEEEEEC
Q psy16425 108 NVTLKCAASGS-PK-PNITWRRE 128 (163)
Q Consensus 108 ~~~l~C~~~~~-p~-p~v~W~~~ 128 (163)
.++|.|.+.|+ |. ..+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999984 54 36899999
No 384
>KOG0613|consensus
Probab=68.27 E-value=22 Score=30.94 Aligned_cols=79 Identities=14% Similarity=0.115 Sum_probs=47.9
Q ss_pred EEEEEcccCCCCCeEEEEEEEeCCCc-eEeEEEEEEc----------------CCcc-cccCCCCcEEEeCCCcEEEEeE
Q psy16425 53 WYLHIREVRESDRGWYMCQVNTDPMK-SQVGYLEVVV----------------PPDI-LDYPTSTDMVIREGSNVTLKCA 114 (163)
Q Consensus 53 ~~L~i~~v~~~d~G~Y~C~~~~~~~~-~~~~~l~v~~----------------~p~~-~~~~~~~~~~~~~g~~~~l~C~ 114 (163)
.+..|.+....+.+.|+|...+.+.. ...+.-.+.. +|.. ........+....+..+++.|.
T Consensus 278 ~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~ 357 (1205)
T KOG0613|consen 278 NTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTA 357 (1205)
T ss_pred ccccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeeccc
Confidence 35677888888889999988544322 2222211111 1111 1112223455666778999999
Q ss_pred eccCCCCe-EEEEECCeE
Q psy16425 115 ASGSPKPN-ITWRREGGE 131 (163)
Q Consensus 115 ~~~~p~p~-v~W~~~~~~ 131 (163)
..+.+.|. +.|+.++..
T Consensus 358 ~~~~~~p~~~~~~~~~~~ 375 (1205)
T KOG0613|consen 358 LSGTQKPDEAQGYHGEEV 375 (1205)
T ss_pred ccCCcCCchheeeccccc
Confidence 99998886 999987643
No 385
>PHA03286 envelope glycoprotein E; Provisional
Probab=66.62 E-value=17 Score=27.84 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=20.6
Q ss_pred EEEEcccCCCCCeEEEEEEEeCCC
Q psy16425 54 YLHIREVRESDRGWYMCQVNTDPM 77 (163)
Q Consensus 54 ~L~i~~v~~~d~G~Y~C~~~~~~~ 77 (163)
+|.+.|+..+++|.|.|.+...+.
T Consensus 308 nL~f~nA~~s~SGLYVfVl~yNGH 331 (492)
T PHA03286 308 SFRLANAQPTDAGLYVVVALYNGR 331 (492)
T ss_pred ceeecCCCcccCceEEEEEEECCc
Confidence 589999999999999999965543
No 386
>PHA02935 Hypothetical protein; Provisional
Probab=65.92 E-value=31 Score=23.50 Aligned_cols=64 Identities=19% Similarity=0.291 Sum_probs=32.7
Q ss_pred EEEEcccCCCCCeEEEEEEEeCCCceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEecc
Q psy16425 54 YLHIREVRESDRGWYMCQVNTDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASG 117 (163)
Q Consensus 54 ~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~ 117 (163)
-|.|..++-+|+|.|.-...-....-....+.+.+...+...........+.-..+.+.|++..
T Consensus 103 clnisslryedsgsykgvshlkdgvivtttmnisvkaniidltgrvryltrnycevkirceiks 166 (349)
T PHA02935 103 CLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISVKANIIDLTGRVRYLTRNYCEVKIRCEIKS 166 (349)
T ss_pred EeeccceeeccCCcccCchhhcCceEEEEEEEEEEEeeeEeccceeeeeccccEEEEEEEEEee
Confidence 4567888899999997654211222223334444433332222111222333456788887653
No 387
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=65.24 E-value=35 Score=22.37 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=20.9
Q ss_pred ceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 51 KAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 51 ~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
...-|.|.+-+++|+|.|.-++.-.
T Consensus 122 ~~~lL~i~~p~~~dsG~Y~lRV~l~ 146 (161)
T PF01688_consen 122 NGVLLRIRNPRPEDSGIYYLRVWLD 146 (161)
T ss_pred cceEEEeCCCCcccceEEEEEEEEC
Confidence 4456899999999999999998544
No 388
>PHA03286 envelope glycoprotein E; Provisional
Probab=61.24 E-value=75 Score=24.62 Aligned_cols=75 Identities=15% Similarity=0.071 Sum_probs=44.4
Q ss_pred EEEEcccCCCCCeEEEEEEEeCCCce--EeEEEEEEc-----CCccc--ccCC----------CCcEEEeCCCcEEEEeE
Q psy16425 54 YLHIREVRESDRGWYMCQVNTDPMKS--QVGYLEVVV-----PPDIL--DYPT----------STDMVIREGSNVTLKCA 114 (163)
Q Consensus 54 ~L~i~~v~~~d~G~Y~C~~~~~~~~~--~~~~l~v~~-----~p~~~--~~~~----------~~~~~~~~g~~~~l~C~ 114 (163)
-|.|.+++.+++|.|+-...+....+ ..+.+.|.. +|... ..|. ........|+++.+.-.
T Consensus 128 ~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv~ 207 (492)
T PHA03286 128 ELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASVT 207 (492)
T ss_pred ceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEEE
Confidence 68999999999999999986553333 233445531 11121 1111 12344567998876655
Q ss_pred ec-c-CC---CCeEEEEEC
Q psy16425 115 AS-G-SP---KPNITWRRE 128 (163)
Q Consensus 115 ~~-~-~p---~p~v~W~~~ 128 (163)
.. . .. ..++.|+.-
T Consensus 208 l~~~~~d~~Fsl~i~W~y~ 226 (492)
T PHA03286 208 AHLTNWAGAFSLEFRVLFL 226 (492)
T ss_pred EeecccCCCceEEEEEEEe
Confidence 54 2 22 236889863
No 389
>PHA03283 envelope glycoprotein E; Provisional
Probab=59.87 E-value=85 Score=24.81 Aligned_cols=74 Identities=22% Similarity=0.315 Sum_probs=43.5
Q ss_pred EEEEcccCCCCCeEEEEEEEeCCCceEe--EEEEEEcCCccc---------ccCC----------CCcEEEeCCCcEEEE
Q psy16425 54 YLHIREVRESDRGWYMCQVNTDPMKSQV--GYLEVVVPPDIL---------DYPT----------STDMVIREGSNVTLK 112 (163)
Q Consensus 54 ~L~i~~v~~~d~G~Y~C~~~~~~~~~~~--~~l~v~~~p~~~---------~~~~----------~~~~~~~~g~~~~l~ 112 (163)
-|.|.+++.+++|.|+-..++... +.. +.+.|..++... ..|. -.......|+++.+.
T Consensus 135 ~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ls 213 (542)
T PHA03283 135 VLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLS 213 (542)
T ss_pred eeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeEe
Confidence 699999999999999999865433 333 334444311111 0110 123455679988876
Q ss_pred eEecc-C-C---CCeEEEEEC
Q psy16425 113 CAASG-S-P---KPNITWRRE 128 (163)
Q Consensus 113 C~~~~-~-p---~p~v~W~~~ 128 (163)
-.... . . ..++.|+.-
T Consensus 214 i~l~s~~~d~~fs~~i~Wyy~ 234 (542)
T PHA03283 214 VHLESDIGDPSFSATIDWYYM 234 (542)
T ss_pred EEEeeccCCCCceEEEEEEEe
Confidence 55442 1 2 236889863
No 390
>PHA03290 envelope glycoprotein I; Provisional
Probab=59.81 E-value=42 Score=24.75 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=27.4
Q ss_pred ceEEEEEcccCCCCCeEEEEEEEeCC-CceEeEEEEEEc
Q psy16425 51 KAWYLHIREVRESDRGWYMCQVNTDP-MKSQVGYLEVVV 88 (163)
Q Consensus 51 ~~~~L~i~~v~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~ 88 (163)
...-|.|.+-+++|+|.|.-++.-.+ ..+..+.+.+.+
T Consensus 127 ~~vLL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv~V 165 (357)
T PHA03290 127 AEIIFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGLNV 165 (357)
T ss_pred cceEEEeCCCCcccCeeEEEEEEeCCCcccceEEEEEEE
Confidence 44578999999999999999996543 334455555544
No 391
>PHA03283 envelope glycoprotein E; Provisional
Probab=58.92 E-value=29 Score=27.24 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=22.0
Q ss_pred ceEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425 51 KAWYLHIREVRESDRGWYMCQVNTDP 76 (163)
Q Consensus 51 ~~~~L~i~~v~~~d~G~Y~C~~~~~~ 76 (163)
+...|.+.|+..+++|.|.|.+...+
T Consensus 313 ~~v~L~f~nap~~~SGLYVfVv~yNg 338 (542)
T PHA03283 313 NRVDLLFKNAPASASGLYVFVLLYNG 338 (542)
T ss_pred CCcceEeccCCcccCceEEEEEEECC
Confidence 44689999999999999999996443
No 392
>PHA03270 envelope glycoprotein C; Provisional
Probab=53.20 E-value=1e+02 Score=23.77 Aligned_cols=61 Identities=15% Similarity=0.286 Sum_probs=28.5
Q ss_pred EEEEEEEeCCCceEeEEEEEEcCCcccccCCCCcEEEe-CCCcEEEEeEeccCC-CCeEEEEECCeEE
Q psy16425 67 WYMCQVNTDPMKSQVGYLEVVVPPDILDYPTSTDMVIR-EGSNVTLKCAASGSP-KPNITWRREGGEL 132 (163)
Q Consensus 67 ~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~-~g~~~~l~C~~~~~p-~p~v~W~~~~~~~ 132 (163)
..+|.+.-.........+.-...|.+-..| ...+. +++ ...|.+.--| ...+.|.-++...
T Consensus 299 sLrC~v~W~rd~vS~sR~nAa~~P~VY~~P---~Isv~F~dG--~AVCtA~CVPegV~l~W~V~D~~~ 361 (466)
T PHA03270 299 NLTCEFTWHRDSVSFSRRNATGAPTVLPRP---TIEMEFGGD--EAVCTAACVPEGVTLAWLLGADPA 361 (466)
T ss_pred CceEEEEEccCCccceeecccccCccccCC---eEEEEEeCC--EEEEeccccCCCCEEEEEecCCCC
Confidence 679998644322222223323333333322 22222 223 3346555434 3479998776554
No 393
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=52.23 E-value=25 Score=19.22 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=15.8
Q ss_pred EEEeEeccCCCCeEEEEECCeEEEec
Q psy16425 110 TLKCAASGSPKPNITWRREGGELIAQ 135 (163)
Q Consensus 110 ~l~C~~~~~p~p~v~W~~~~~~~~~~ 135 (163)
+|.|.+.. .-.++|+-||..+..-
T Consensus 2 tltC~s~~--sLPiswYcN~TRLlRl 25 (71)
T PF11049_consen 2 TLTCPSNA--SLPISWYCNGTRLLRL 25 (71)
T ss_pred ceecCCCC--CCcccEEECCceeeee
Confidence 46677643 3358999999887433
No 394
>PHA03292 envelope glycoprotein I; Provisional
Probab=51.19 E-value=77 Score=23.94 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=26.4
Q ss_pred ceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEEEEEE
Q psy16425 51 KAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGYLEVV 87 (163)
Q Consensus 51 ~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 87 (163)
....|.|.+-+++|+|.|.-++.-. ......+.+.+.
T Consensus 126 ~~vLL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~lsvf 163 (413)
T PHA03292 126 TNVLLNITGPQPADSGAYILRVKLDHAPTADVFGLSAF 163 (413)
T ss_pred cceEEEeCCCCcccceeEEEEEEeCCCccCceeEEEEE
Confidence 4467899999999999999999544 233344444443
No 395
>PHA03281 envelope glycoprotein E; Provisional
Probab=50.71 E-value=49 Score=26.28 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=21.3
Q ss_pred eEEEEEcccCCCCCeEEEEEEEeCC
Q psy16425 52 AWYLHIREVRESDRGWYMCQVNTDP 76 (163)
Q Consensus 52 ~~~L~i~~v~~~d~G~Y~C~~~~~~ 76 (163)
...|.+.++..+++|.|.|.+...+
T Consensus 474 ~vdL~F~nApasaSGLYVfVl~yNG 498 (642)
T PHA03281 474 GSALKFVDAAESLSGLYVFIIHFNG 498 (642)
T ss_pred CcceEeccCCcccCceEEEEEEECC
Confidence 4579999999999999999996544
No 396
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=47.87 E-value=56 Score=19.13 Aligned_cols=51 Identities=14% Similarity=0.220 Sum_probs=28.0
Q ss_pred cEEEeCCCcEEEEeEeccCCCCeEEEEECCeEEEecCCceEEeceEEEEcchh
Q psy16425 100 DMVIREGSNVTLKCAASGSPKPNITWRREGGELIAQGNGQEDFPFFKRTKKKK 152 (163)
Q Consensus 100 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~l~i~~v~~ 152 (163)
...+..|+++.+.|...-..+..+.|.-.-....... ...-..|.+.+|+.
T Consensus 12 ~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k~~~~~--g~~W~~f~LsnV~~ 62 (91)
T PF03921_consen 12 EPVVPPGGSVWVNCSTSCPQPEKIGLETSLSKTELDS--GPQWKAFQLSNVTE 62 (91)
T ss_dssp EEEEETTEEEEEEEEESSSS-SEEEEESSSEEEEEEE--ETTEEEEEEEEE-S
T ss_pred ccEECCCCCEEEEEcCCCCCCCcceEEEecCCcccCC--CCcEEEEEEEcccc
Confidence 5668889999999998643333466654322211111 01224566777765
No 397
>PHA03289 envelope glycoprotein I; Provisional
Probab=46.53 E-value=92 Score=22.97 Aligned_cols=37 Identities=35% Similarity=0.326 Sum_probs=26.0
Q ss_pred ceEEEEEcccCCCCCeEEEEEEEeCC-CceEeEEEEEE
Q psy16425 51 KAWYLHIREVRESDRGWYMCQVNTDP-MKSQVGYLEVV 87 (163)
Q Consensus 51 ~~~~L~i~~v~~~d~G~Y~C~~~~~~-~~~~~~~l~v~ 87 (163)
.+.-|.|.+-+++|+|.|.-++.-.+ .....+.+.+.
T Consensus 120 ~gvLL~I~~Pr~~DSGiYyLRV~Ldga~~sDvF~lsv~ 157 (352)
T PHA03289 120 KGLLLTIIEPRMSDTGIYYIRVSLAGRNKSDIFRTSVF 157 (352)
T ss_pred CceEEEeCCCCcccCeeEEEEEEeCCCccCceEEEEEE
Confidence 44578999999999999999996442 33344444443
No 398
>KOG0200|consensus
Probab=44.35 E-value=88 Score=25.29 Aligned_cols=22 Identities=41% Similarity=0.996 Sum_probs=19.6
Q ss_pred EEEEEcccCCCCCeEEEEEEEe
Q psy16425 53 WYLHIREVRESDRGWYMCQVNT 74 (163)
Q Consensus 53 ~~L~i~~v~~~d~G~Y~C~~~~ 74 (163)
+.+.+..+...|.|.|+|.+.+
T Consensus 13 ~~~~~~~~~~~~~~~y~~~~~~ 34 (609)
T KOG0200|consen 13 WFLIIDSVVPGDKGFYTCLVSN 34 (609)
T ss_pred ceEEEEEEEecCCccEEEEEec
Confidence 4788889999999999999976
No 399
>KOG0613|consensus
Probab=38.17 E-value=37 Score=29.67 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=44.7
Q ss_pred EEEEcccCCCCCeEEEEEEEeCCCceEeEE-EEEEc------CCcccccCCCCcEEEeCCCcEEEEeEeccCCCC--eEE
Q psy16425 54 YLHIREVRESDRGWYMCQVNTDPMKSQVGY-LEVVV------PPDILDYPTSTDMVIREGSNVTLKCAASGSPKP--NIT 124 (163)
Q Consensus 54 ~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~-l~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p--~v~ 124 (163)
.+.|..+.+.+.+.|.|.+.+.+....... ..++. ++.+.... .....+..-+.+.+.|...+.+.| .++
T Consensus 394 ~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~-~~t~~L~~~~~i~~~~~~~s~~~~~~~~t 472 (1205)
T KOG0613|consen 394 TYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDV-STTDLLTVKDEITVRTPDSSTSMPMTTVT 472 (1205)
T ss_pred chhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCccccccc-cccccccCCcccccccCCCCccccceeEe
Confidence 678999999999999999976644433222 22332 22222211 112222233678889998887744 566
Q ss_pred EEECCe
Q psy16425 125 WRREGG 130 (163)
Q Consensus 125 W~~~~~ 130 (163)
|.+++-
T Consensus 473 t~~~~~ 478 (1205)
T KOG0613|consen 473 TIKDGL 478 (1205)
T ss_pred eccCCc
Confidence 666543
No 400
>KOG3611|consensus
Probab=36.78 E-value=1.1e+02 Score=25.44 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=18.9
Q ss_pred EEEEcccCCCCCeEEEEEEEeCC
Q psy16425 54 YLHIREVRESDRGWYMCQVNTDP 76 (163)
Q Consensus 54 ~L~i~~v~~~d~G~Y~C~~~~~~ 76 (163)
.+.+..++..|+|.|.|.+....
T Consensus 613 ~lll~~~q~~~~G~y~c~~~e~~ 635 (737)
T KOG3611|consen 613 GLVLLSVQKLDGGTYPCYADESS 635 (737)
T ss_pred ceeEEEEeeccCcccccccccCc
Confidence 47788899999999999995543
No 401
>PHA03291 envelope glycoprotein I; Provisional
Probab=36.08 E-value=1.7e+02 Score=22.01 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=26.8
Q ss_pred ceEEEEEcccCCCCCeEEEEEEEeC-CCceEeEEEEEE
Q psy16425 51 KAWYLHIREVRESDRGWYMCQVNTD-PMKSQVGYLEVV 87 (163)
Q Consensus 51 ~~~~L~i~~v~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 87 (163)
....|.|.+...+|+|.|.-++.-. ......+.|.+.
T Consensus 127 ~~vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~~ 164 (401)
T PHA03291 127 RQPLLRARGAARAVVGLYVLRVWVEGATNASLFPLGLA 164 (401)
T ss_pred cceEEEecCCCcccceeEEEEEEeCCCcccceEEEeee
Confidence 3457899999999999999999544 333345555555
No 402
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=35.21 E-value=94 Score=20.86 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=20.5
Q ss_pred ceEEEEEcccCCCCCeEEEEEEEeC
Q psy16425 51 KAWYLHIREVRESDRGWYMCQVNTD 75 (163)
Q Consensus 51 ~~~~L~i~~v~~~d~G~Y~C~~~~~ 75 (163)
+...+.+.-|...-+|-|+|.+...
T Consensus 91 G~i~mt~hQVN~DGaGP~~C~iD~t 115 (184)
T PF11327_consen 91 GSISMTIHQVNADGAGPFTCDIDET 115 (184)
T ss_pred CEEEEEEEEecCCCCcCeEEEECCC
Confidence 4567788999988899999999544
No 403
>PHA03281 envelope glycoprotein E; Provisional
Probab=32.74 E-value=2.6e+02 Score=22.50 Aligned_cols=75 Identities=11% Similarity=0.083 Sum_probs=43.4
Q ss_pred EEEEcccCCCCCeEEEEEEEeCCCceE--eEEEEEEcCC-----cccccCC----------CCcEEEeCCCcEEEEeEec
Q psy16425 54 YLHIREVRESDRGWYMCQVNTDPMKSQ--VGYLEVVVPP-----DILDYPT----------STDMVIREGSNVTLKCAAS 116 (163)
Q Consensus 54 ~L~i~~v~~~d~G~Y~C~~~~~~~~~~--~~~l~v~~~p-----~~~~~~~----------~~~~~~~~g~~~~l~C~~~ 116 (163)
.|.|.+++..++|.|+-..+.....+. .+.+.|...+ ...+.+. -.+.....|+++.+.....
T Consensus 299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L~ 378 (642)
T PHA03281 299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHLQ 378 (642)
T ss_pred eeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEEEe
Confidence 799999999999999988753322222 3445554322 1111111 1234456788887766554
Q ss_pred cC--CC---CeEEEEEC
Q psy16425 117 GS--PK---PNITWRRE 128 (163)
Q Consensus 117 ~~--p~---p~v~W~~~ 128 (163)
.. .. .++.|+.-
T Consensus 379 s~ihD~pFsleI~Wyy~ 395 (642)
T PHA03281 379 YKIHDAPFDLLLEWLYV 395 (642)
T ss_pred eeccCCCceeEEEEEEe
Confidence 32 22 36889863
No 404
>PHA01327 hypothetical protein
Probab=27.01 E-value=34 Score=16.66 Aligned_cols=11 Identities=36% Similarity=0.661 Sum_probs=6.7
Q ss_pred hhhhHhhhhhc
Q psy16425 151 KKKKKKKKKKK 161 (163)
Q Consensus 151 ~~~~~~~~~~~ 161 (163)
.+.|.|||+-|
T Consensus 24 er~drmkkrhk 34 (49)
T PHA01327 24 ERKDRMKKRHK 34 (49)
T ss_pred HHHHHHHHHHH
Confidence 35677777644
No 405
>PHA03269 envelope glycoprotein C; Provisional
Probab=24.62 E-value=3.6e+02 Score=21.47 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=29.5
Q ss_pred eEEEEEEEeCCCceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCC--CeEEEEECCeE
Q psy16425 66 GWYMCQVNTDPMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPK--PNITWRREGGE 131 (163)
Q Consensus 66 G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--p~v~W~~~~~~ 131 (163)
-..+|.+.-.........+.-...|.+-..|. .++.. +++ ...|.+.--|. ..+.|.-++..
T Consensus 407 PsLrCeV~W~RDsVS~tRfnAaatP~VY~~Pt-ISm~F-edG--~AVCtA~CVP~~~V~l~WlVgD~p 470 (566)
T PHA03269 407 PAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPN-VSIEI-IDG--HIVCLAKCVPRGVVHFNWWINDIP 470 (566)
T ss_pred CCceEEEEEccCCchheecccccCCccccCCe-EEEEE-eCC--EEEEecccccCCCceEEEEecCCC
Confidence 45699996443222222222223333333221 11222 223 34577665554 36899877655
No 406
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.51 E-value=7.3e+02 Score=24.91 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=45.8
Q ss_pred cCCCCCeEEEEEEE--eC-CCceEeEEEEEEcCCcccccCCCCcEEEeCCCcEEEEeEeccCCCCeEEEEECCe
Q psy16425 60 VRESDRGWYMCQVN--TD-PMKSQVGYLEVVVPPDILDYPTSTDMVIREGSNVTLKCAASGSPKPNITWRREGG 130 (163)
Q Consensus 60 v~~~d~G~Y~C~~~--~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~ 130 (163)
.+..++|.|+..+. |. ........+.|+.+..-..... ....+..|+.++|.+.....+.-.+.|...+.
T Consensus 1834 ~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~a-s~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdg 1906 (2740)
T TIGR00864 1834 MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKA-SKKIAAIGEKVEFQILLAAGSAVNFRLQIGGA 1906 (2740)
T ss_pred EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEec-ccccccCCCEEEEEEEecCCCceEEEEEeCCC
Confidence 45678899988873 33 3334455677776554333222 23356679999999988766677888987654
No 407
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=22.86 E-value=1.8e+02 Score=17.33 Aligned_cols=60 Identities=17% Similarity=0.108 Sum_probs=32.6
Q ss_pred EEee-eeccCCCEEEEEEcCCceEEeeeeeEEecCCeEEEEeCCCceEEEEEcccCCCCCeEEEEEEEe
Q psy16425 7 IEIG-EMLMAESTVAWLRVDTQTILTIQTHVITKNHRIGVTHSETKAWYLHIREVRESDRGWYMCQVNT 74 (163)
Q Consensus 7 ~~~~-~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~ 74 (163)
..|. +.+-|+..|.|.-.-+..... ......++.+.+.. .+.+......|.-.-+|.+..
T Consensus 25 A~CiSa~GrPpa~ItW~t~l~G~~et--q~~~~~~GT~TV~S------~y~lVPs~~~~gk~lTCvV~h 85 (98)
T cd05890 25 ATCVSANGKPPSVVRWDTRLKGEAEF--QEIRNQNGTVTVIS------RYRLVPSREAHKQKLTCIVNY 85 (98)
T ss_pred EEEEcCCCcCCcEeEEEccCCCceee--eeeCCCCCCEEEEE------EEEEeECHHHcCCEeEEEEEe
Confidence 3344 788999999998632111111 11111222333332 345556666777788999854
No 408
>PF02063 MARCKS: MARCKS family; InterPro: IPR002101 Myristoylated alanine-rich C-kinase substrate (MARCKS) is a predominent cellular substrate for protein kinase C (PKC) that has been implicated in the regulation of brain development, macrophage activation, neuro-secretion and growth factor-dependent mitogenesis [, ]. The N-terminal glycine is the site of myristoylation, which allows effective binding of the protein to the plasma membrane, where it co-localises with PKC []. MARCKS binds calmodulin in a calcium-dependent manner; the region responsible for calcium-binding is highly basic, a domain of about 25 amino acids known as the PSD or effector domain, which also contains the PKC phosphorylation sites and has been shown to contribute to membrane binding. When not phosphorylated, the effector domain can bind to filamentous actin []. It is believed that MARCKS may be a regulated crossbridge between actin and the plasma membrane; modulation of the actin cross-linking activity by calmodulin and phosphorylation, represent a potential convergence of the calcium-calmodulin and PKC signal transduction pathways in regulation of the actin cytoskeleton. MARCKS also contains an MH2 domain of unknown function. MARCKS-related protein (MRP) is similar to MARCKS in terms of properties such as its myristoylation, phosphorylation and calmodulin-binding, and shares a high degree of sequence similarity. The two regions that show the highest similarity are the kinase C phosphorylation site domain and the N-terminal region containing the myristoylation site []. MARCKS and MRP amino acid compositions are similar, but the alanine content of the latter is lower. MARCKS proteins appear to adopt a native unfolded conformation i.e. as randomly folded chains arranged in non-classical extended conformations, in common with other substrates of PKC.; GO: 0005516 calmodulin binding; PDB: 1IWQ_B.
Probab=22.26 E-value=31 Score=24.74 Aligned_cols=6 Identities=83% Similarity=1.038 Sum_probs=0.0
Q ss_pred hhhhcc
Q psy16425 157 KKKKKK 162 (163)
Q Consensus 157 ~~~~~~ 162 (163)
||||||
T Consensus 133 KKKKKr 138 (294)
T PF02063_consen 133 KKKKKR 138 (294)
T ss_dssp ------
T ss_pred hhhccc
Confidence 333333
No 409
>KOG2422|consensus
Probab=21.78 E-value=29 Score=27.74 Aligned_cols=15 Identities=60% Similarity=0.742 Sum_probs=7.1
Q ss_pred EEcchhhhHhhhhhc
Q psy16425 147 RTKKKKKKKKKKKKK 161 (163)
Q Consensus 147 i~~v~~~~~~~~~~~ 161 (163)
++.+++..++|||||
T Consensus 84 ~~~~sk~k~KKK~kr 98 (665)
T KOG2422|consen 84 ASKSSKNKKKKKKKR 98 (665)
T ss_pred cchhhccccchhhhh
Confidence 345555544444443
No 410
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=20.54 E-value=53 Score=15.41 Aligned_cols=10 Identities=50% Similarity=1.135 Sum_probs=7.4
Q ss_pred CCCCeEEEEE
Q psy16425 62 ESDRGWYMCQ 71 (163)
Q Consensus 62 ~~d~G~Y~C~ 71 (163)
..+.|.|+|.
T Consensus 20 ~~~dG~~yC~ 29 (36)
T PF11781_consen 20 YSDDGFYYCD 29 (36)
T ss_pred EccCCEEEhh
Confidence 4567899984
No 411
>TIGR02572 LcrR type III secretion system regulator LcrR. This protein is found in type III secretion operons and has been characterized in Yersinia as a regulator of the Low-Calcium Respone (LCR).
Probab=20.05 E-value=64 Score=20.44 Aligned_cols=19 Identities=26% Similarity=0.176 Sum_probs=15.2
Q ss_pred ceEEEEcchhhhHhhhhhc
Q psy16425 143 PFFKRTKKKKKKKKKKKKK 161 (163)
Q Consensus 143 ~~l~i~~v~~~~~~~~~~~ 161 (163)
-.|.+.+|-.-++|||++|
T Consensus 121 f~L~~~~v~~l~~~kk~q~ 139 (139)
T TIGR02572 121 FELEASDVITLKKMKKRQK 139 (139)
T ss_pred EEEEeccEeehHHhhhccC
Confidence 3578888988899988765
Done!