BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16426
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 11/136 (8%)
Query: 17 QLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQVPPMIWIQNQLVGAME--GDQM 73
Q+ G + D+ T C + IN+ ++ ++I VPP + + +V A G +
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARGEINF---KDIQVIVNVPPTVQARQSIVNATANLGQSV 214
Query: 74 TLECHSEAYPKSINYWTKENGEIIAQGSKYEP-ILLDNAYKIHMKLTIKAVTKQDFGAYK 132
TL C ++ +P+ WTK+ I + E I D++ + LTI+ V K D Y
Sbjct: 215 TLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSE----LTIRNVDKNDEAEYV 270
Query: 133 CVSKNSLGDTDGSIKL 148
C+++N G+ D SI L
Sbjct: 271 CIAENKAGEQDASIHL 286
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 49 EIIAQVPPMIWIQNQLVGAME--GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPI 106
++I VPP + + + A +TL C ++ +P+ WTK +GE I Q E
Sbjct: 5 QVIVNVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTK-DGEPIEQEDNEEKY 63
Query: 107 LLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ Y +L IK V K D Y C+++N G+ D +I L
Sbjct: 64 SFN--YD-GSELIIKKVDKSDEAEYICIAENKAGEQDATIHL 102
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 50 IIAQVPPMIWIQNQLVGAM--EGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPIL 107
+I VPP I + + A G++MT C + P+ W + NG++I + KY +
Sbjct: 91 VIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLIEENEKY---I 146
Query: 108 LDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTD 143
L + + +LT++ + D G Y C + N G+ +
Sbjct: 147 LKGS---NTELTVRNIINSDGGPYVCRATNKAGEDE 179
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 7 NVPPMIWIQNQLVGAM--EGDQMTLECHSEAYPKSINYWTKENGEIIAQ 53
NVPP I + + A G++MT C + P+ W + NG++I +
Sbjct: 94 NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLIEE 141
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 50 IIAQVPPMIWIQNQLVGAM--EGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPIL 107
+I VPP I + + A G++MT C + P+ W + NG++I + KY +
Sbjct: 187 VIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLIEENEKY---I 242
Query: 108 LDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTD 143
L + + +LT++ + D G Y C + N G+ +
Sbjct: 243 LKGS---NTELTVRNIINSDGGPYVCRATNKAGEDE 275
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 7 NVPPMIWIQNQLVGAM--EGDQMTLECHSEAYPKSINYWTKENGEIIAQ 53
NVPP I + + A G++MT C + P+ W + NG++I +
Sbjct: 190 NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLIEE 237
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFG 129
G+ C + P+SI+++ + +II+ ++ + +LTI +D G
Sbjct: 19 GESKFFTCTAIGEPESIDWYNPQGEKIISTQR-----VVVQKEGVRSRLTIYNANIEDAG 73
Query: 130 AYKCVSKNSLGDT 142
Y+C + ++ G T
Sbjct: 74 IYRCQATDAKGQT 86
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAY 112
+VPP ++ V G+ T +CH W K+N EI G Y+ L++N
Sbjct: 195 EVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREI-RPGGNYKMTLVENT- 252
Query: 113 KIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
LT+ VTK D G Y C + N G S +L
Sbjct: 253 ---ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 285
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
PP+ + V ++G + LEC + P W K+ E + G KY+ + + I
Sbjct: 384 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRE-LRSGKKYKIMSENFLTSI 442
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNSLGDTD--GSIKL 148
H I V D G Y+C + N +G GSI L
Sbjct: 443 H----ILNVDSADIGEYQCKASNDVGSDTCVGSITL 474
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 52 AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNA 111
A PP + V A G+ +TL+C + P+ W KE+ ++ + P A
Sbjct: 2 AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKL-----RSAP-----A 51
Query: 112 YKIHMK-----LTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
YK+ K L I V D G Y C ++NS+G S L
Sbjct: 52 YKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVL 93
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 56 PMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIH 115
PM + Q +EGD + LEC A P +W K N E++ + + DN ++
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFW-KRNNEMVQFNTDRISLYQDNTGRVT 74
Query: 116 MKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L IK V K+D G Y + N G T + +L
Sbjct: 75 --LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 10 PMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEII 51
PM + Q +EGD + LEC A P +W K N E++
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFW-KRNNEMV 56
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 52 AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNA 111
A PP ++ V G+ T +CH W K+N EI G Y+ L++N
Sbjct: 2 AMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREI-RPGGNYKMTLVENT 60
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
LT+ VTK D G Y C + N G S +L
Sbjct: 61 ----ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 93
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
PP+ + V ++G + LEC + P W K+ E + G KY+ + + I
Sbjct: 192 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRE-LRSGKKYKIMSENFLTSI 250
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNSLGDTD--GSIKL 148
H I V D G Y+C + N +G GSI L
Sbjct: 251 H----ILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 52 AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNA 111
A PP ++ V G+ T +CH W K+N EI G Y+ L++N
Sbjct: 2 AMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREI-RPGGNYKMTLVENT 60
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
LT+ VTK D G Y C + N G S +L
Sbjct: 61 ----ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 93
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
PP+ + V ++G + LEC + P W K+ E + G KY+ + + I
Sbjct: 192 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRE-LRSGKKYKIMSENFLTSI 250
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNSLGDTD--GSIKL 148
H I V D G Y+C + N +G GSI L
Sbjct: 251 H----ILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 74 TLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKC 133
TL C +PK I W ++ EIIA G KY Y +L I +VT D Y+
Sbjct: 23 TLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH---QLIIASVTDDDATVYQV 79
Query: 134 VSKNSLGDTDGSIKL 148
+ N G G+ L
Sbjct: 80 RATNQGGSVSGTASL 94
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 74 TLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKC 133
TL C +PK I W ++ EIIA G KY Y +L I +VT D Y+
Sbjct: 21 TLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH---QLIIASVTDDDATVYQV 77
Query: 134 VSKNSLGDTDGSIKL 148
+ N G G+ L
Sbjct: 78 RATNQGGSVSGTASL 92
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 46 ENGEIIAQVPPMIWIQ-NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYE 104
N ++ + P I +Q + V A +G + LEC + P W + +G+ IA+ ++
Sbjct: 195 RNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR-- 252
Query: 105 PILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
+K + L I ++D G+Y+CV++NS G
Sbjct: 253 ------RHKSNGILEIPNFQQEDAGSYECVAENSRG 282
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 14/93 (15%)
Query: 59 WIQ--NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHM 116
W+Q N + AME + + EC + PK W K NG+ P+L + +I
Sbjct: 298 WVQIINDIHVAME-ESVFWECKANGRPKPTYRWLK-NGD---------PLLTRDRIQIEQ 346
Query: 117 -KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L I V D G Y+CV++N G S +L
Sbjct: 347 GTLNITIVNLSDAGMYQCVAENKHGVIFSSAEL 379
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 69 EGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDF 128
E ++ L C + PK W K NG + G + ++D + I+ QD
Sbjct: 22 EEKKVKLSCEVKGNPKPHIRW-KLNGTDVDIGMDFRYSVVDGSLLIN-----NPNKTQDA 75
Query: 129 GAYKCVSKNSLG 140
G Y+C++ NS G
Sbjct: 76 GTYQCIATNSFG 87
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 46 ENGEIIAQVPPMIWIQ-NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYE 104
N ++ + P I +Q + V A +G + LEC + P W + +G+ IA+ ++
Sbjct: 194 RNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR-- 251
Query: 105 PILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGD--TDGSIKLY 149
+K + L I ++D G+Y+CV++NS G G + Y
Sbjct: 252 ------RHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY 292
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 14/93 (15%)
Query: 59 WIQ--NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHM 116
W+Q N + AME + + EC + PK W K NG+ P+L + +I
Sbjct: 297 WVQIINDIHVAME-ESVFWECKANGRPKPTYRWLK-NGD---------PLLTRDRIQIEQ 345
Query: 117 -KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L I V D G Y+CV++N G S +L
Sbjct: 346 GTLNITIVNLSDAGMYQCVAENKHGVIFSSAEL 378
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 69 EGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDF 128
E ++ L C + PK W K NG + G + ++D + I+ QD
Sbjct: 21 EEKKVKLSCEVKGNPKPHIRW-KLNGTDVDIGMDFRYSVVDGSLLIN-----NPNKTQDA 74
Query: 129 GAYKCVSKNSLG 140
G Y+C++ NS G
Sbjct: 75 GTYQCIATNSFG 86
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 74 TLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKC 133
TL C +PK I W ++ EIIA G KY Y +L I +VT D Y+
Sbjct: 23 TLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH---QLIIASVTDDDATVYQV 79
Query: 134 VSKNSLGDTDGSIKL 148
+ N G G+ L
Sbjct: 80 RATNQGGSVSGTASL 94
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 17/90 (18%)
Query: 65 VGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHM------KL 118
+ EG L+C + S++ W NG ++ G AYK+ + L
Sbjct: 351 LNVTEGMAAELKCRASTSLTSVS-WITPNGTVMTHG----------AYKVRIAVLSDGTL 399
Query: 119 TIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
VT QD G Y C+ NS+G+T S L
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATL 429
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 67 AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQ 126
A+ G Q+TLEC + P W K +G + Q + EP L I +V+ +
Sbjct: 218 ALVGQQVTLECFAFGNPVPRIKWRKVDGSLSPQWTTAEPT-----------LQIPSVSFE 266
Query: 127 DFGAYKCVSKNSLG 140
D G Y+C ++NS G
Sbjct: 267 DEGTYECEAENSKG 280
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 23/129 (17%)
Query: 25 DQMTLECHSEAYPKSINYWTKEN--GEIIAQVPPMIWIQNQLVGAMEGD---QMTLECHS 79
D+ T EC +E N ++ G II Q P W++ ++ E D + C +
Sbjct: 267 DEGTYECEAE------NSKGRDTVQGRIIVQAQPE-WLK--VISDTEADIGSNLRWGCAA 317
Query: 80 EAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139
P+ W + NGE +A ++ E + D L ++ +D G Y+CV++N
Sbjct: 318 AGKPRPTVRWLR-NGEPLASQNRVEVLAGD--------LRFSKLSLEDSGMYQCVAENKH 368
Query: 140 GDTDGSIKL 148
G S +L
Sbjct: 369 GTIYASAEL 377
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 71 DQMTLECHSEAYPKSINYWTKENGEI-IAQGSKYEPILLDNAYKIHMKLTIKAVTK-QDF 128
+Q+ L C + A P + W E+ + GS+++ + L I TK QD
Sbjct: 22 EQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQ--------LVGGNLVIMNPTKAQDA 73
Query: 129 GAYKCVSKNSLG 140
G Y+C++ N +G
Sbjct: 74 GVYQCLASNPVG 85
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 65 VGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVT 124
V +EG + L C + PK W K G+ + + +L + +IH V
Sbjct: 110 VKIIEGLKAVLPCTTMGNPKPSVSWIK--GDSALRENSRIAVLESGSLRIH------NVQ 161
Query: 125 KQDFGAYKCVSKNSLG 140
K+D G Y+CV+KNSLG
Sbjct: 162 KEDAGQYRCVAKNSLG 177
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 56 PMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIH 115
P+I + V A+ + T C E+YP+ WT+ +I+ + L D Y I
Sbjct: 8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTR--NKILIK-------LFDTRYSIR 58
Query: 116 MK---LTIKAVTKQDFGAYKCVSKNSLG 140
LTI +V D G Y C + N +G
Sbjct: 59 ENGQLLTILSVEDSDDGIYCCTANNGVG 86
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 17/90 (18%)
Query: 65 VGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMK------L 118
+ EG L+C + S+N W NG ++ GS Y++ + L
Sbjct: 322 LNVTEGMAAELKCRTGTSMTSVN-WLTPNGTLMTHGS----------YRVRISVLHDGTL 370
Query: 119 TIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
VT QD G Y C+ NS G+T S L
Sbjct: 371 NFTNVTVQDTGQYTCMVTNSAGNTTASATL 400
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 68 MEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQD 127
+ G + LEC + P W K+ G++ + +K+E + L I V+++D
Sbjct: 235 LRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFE--------NFNKALRITNVSEED 286
Query: 128 FGAYKCVSKNSLGDTDGSIKL 148
G Y C++ N +G +I +
Sbjct: 287 SGEYFCLASNKMGSIRHTISV 307
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 67 AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQ 126
A G++MT C + P+ W + NG++I + KY +L + + +LT++ +
Sbjct: 16 AERGEEMTFSCRASGSPEPAISWFR-NGKLIEENEKY---ILKGS---NTELTVRNIINS 68
Query: 127 DFGAYKCVSKNSLGDTD 143
D G Y C + N G+ +
Sbjct: 69 DGGPYVCRATNKAGEDE 85
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTK--ENGEIIAQGSKYEPILLDNAY 112
PP I + +G+ TL C +E P W K E E + +LL +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 113 KIHMKLTIKAVTKQDFGAYKCVSKNSLGDT 142
+++ ++ D G Y CV++N LG+
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTK--ENGEIIAQGSKYEPILLDNAY 112
PP I + +G+ TL C +E P W K E E + +LL +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 113 KIHMKLTIKAVTKQDFGAYKCVSKNSLGDT---DGSIKL 148
+++ ++ D G Y CV++N LG+ D S+++
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 70 GDQMTLECHS-EAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDF 128
G+ +EC +P+ W K+ + K E I + KL I K D
Sbjct: 126 GEPAVMECQPPRGHPEPTISWKKDGSPL---DDKDERITIRGG-----KLMITYTRKSDA 177
Query: 129 GAYKCVSKNSLGDTDGSI 146
G Y CV N +G+ + +
Sbjct: 178 GKYVCVGTNMVGERESEV 195
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 47 NGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPI 106
+ E+ VPP + A E + EC P W K NG+++ ++ +
Sbjct: 304 SAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMK-NGDVVIPSDYFQIV 362
Query: 107 LLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
N L I V K D G Y+CV++N G+ S +L
Sbjct: 363 GGSN-------LRILGVVKSDEGFYQCVAENEAGNAQSSAQL 397
Score = 33.5 bits (75), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 65 VGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVT 124
V A+EG LEC YP W + I + KY LL + L I VT
Sbjct: 231 VIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYS--LLGGS-----NLLISNVT 283
Query: 125 KQDFGAYKCV 134
D G Y CV
Sbjct: 284 DDDSGTYTCV 293
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 46 ENGEIIAQV-------PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIA 98
++G II++ P Q + + A GD + L+C P +W K ++
Sbjct: 105 DSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNP 164
Query: 99 QGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGS 145
++L + L I + D G Y+C ++N G+
Sbjct: 165 IPGDSRVVVLPSG-----ALQISRLQPGDSGVYRCSARNPASTRTGN 206
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 69 EGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDF 128
EG+Q+ + C AYP + W + +G+++ S Y I + N L + ++ DF
Sbjct: 32 EGNQVNITCEVFAYPSATISWFR-DGQLLPS-SNYSNIKIYNTPSASY-LEVTPDSENDF 88
Query: 129 GAYKCVSKNSLG 140
G Y C + N +G
Sbjct: 89 GNYNCTAVNRIG 100
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 63 QLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKA 122
Q V +EG T E H +P W + +G++I+ + P + + KLTI A
Sbjct: 13 QSVVVLEGSTATFEAHISGFPVPEVSWFR-DGQVISTSTL--PGVQISFSDGRAKLTIPA 69
Query: 123 VTKQDFGAYKCVSKNSLGDTDGSIKL 148
VTK + G Y + N G + +L
Sbjct: 70 VTKANSGRYSLKATNGSGQATSTAEL 95
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 63 QLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKA 122
Q V +EG T E H +P W ++ G++I+ + P + + KLTI A
Sbjct: 13 QSVVVLEGSTATFEAHISGFPVPEVSWFRD-GQVISTSTL--PGVQISFSDGRAKLTIPA 69
Query: 123 VTKQDFGAYKCVSKNSLGDTDGSIKL 148
VTK + G Y + N G + +L
Sbjct: 70 VTKANSGRYSLKATNGSGQATSTAEL 95
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 67 AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQ 126
+ G + C + PK W K+ ++ +Q ++E I D+ +++ V ++
Sbjct: 19 GLSGGVASFVCQATGEPKPRITWMKKGKKVSSQ--RFEVIEFDDGAGSVLRIQPLRV-QR 75
Query: 127 DFGAYKCVSKNSLGDTDGSIKL 148
D Y+C + NSLG+ + S KL
Sbjct: 76 DEAIYECTATNSLGEINTSAKL 97
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 49 EIIAQVPPMIWIQN--QLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPI 106
E + V P + Q+ Q + +L C +++YP W K I ++ + +
Sbjct: 207 EPVGSVRPKVNPQDKHQFIDVELASSYSLLCMAQSYPTPSFRWYK----FIEGTTRKQAV 262
Query: 107 LLDNAYK-IHMKLTIKAVTKQDFGAYKCVSKNSLG 140
+L++ K + L IK +D G Y CV NS+G
Sbjct: 263 VLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVG 297
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 67 AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQ 126
+ G + C + PK W K+ ++ +Q ++E I D+ +++ V ++
Sbjct: 18 GLSGGVASFVCQATGEPKPRITWMKKGKKVSSQ--RFEVIEFDDGAGSVLRIQPLRV-QR 74
Query: 127 DFGAYKCVSKNSLGDTDGSIKL 148
D Y+C + NSLG+ + S KL
Sbjct: 75 DEAIYECTATNSLGEINTSAKL 96
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 34.7 bits (78), Expect = 0.033, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYK 132
M L C ++ YP + W K I K +L D ++ L IK +D G Y
Sbjct: 266 MALLCPAQGYPVPVFRWYKF---IEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL 322
Query: 133 CVSKNSLG 140
CV NS+G
Sbjct: 323 CVVNNSVG 330
Score = 29.6 bits (65), Expect = 0.95, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYE--PILLDNAY 112
PP+I Q G + L+C + P W + +G+ IA +Y+ + N
Sbjct: 429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISW-ELDGKKIANNDRYQVGQYVTVNG- 486
Query: 113 KIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ L I +V D G YKC++K+ +G + S KL
Sbjct: 487 DVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL 522
Score = 28.9 bits (63), Expect = 1.6, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 54 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYK 113
VPP ++ +G +EC ++ +PK W K G+ G + DN
Sbjct: 713 VPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGD--TPGEYKDLKKSDNIRV 770
Query: 114 IHMKLTIKAVTKQDFGAYKCVSKNSLG 140
L + + K + G Y C + N +G
Sbjct: 771 EEGTLHVDNIQKTNEGYYLCEAINGIG 797
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 48 GEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPIL 107
G I ++ + +Q+ V + + ++ E P +I WTK+ G+ I QG KY+ L
Sbjct: 1 GPISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAI--WTKD-GKAITQGGKYK--L 55
Query: 108 LDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
++ K L I D G Y C KNS G S KL
Sbjct: 56 SED--KGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Query: 39 SINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI-- 96
S W K N + PP I ++ + + G+ + C + N K
Sbjct: 172 STGIWLKVNR--VHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLE 229
Query: 97 IAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
I S ++ DN YK L++ AV QD G Y CV+ N +G ++
Sbjct: 230 IPLNSDFQ----DNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNF 277
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Query: 39 SINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI-- 96
S W K N + PP I ++ + + G+ + C + N K
Sbjct: 172 STGIWLKVNR--VHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLE 229
Query: 97 IAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
I S ++ DN YK L++ AV QD G Y CV+ N +G ++
Sbjct: 230 IPLNSDFQ----DNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNF 277
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 52 AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNA 111
A PP I + Q G G + C + P W K ++ S+Y +L+
Sbjct: 5 AAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRY--TVLEQP 62
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLGD---TDGSIKLY 149
I + +D Y+CV++N +GD D ++ +Y
Sbjct: 63 GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIY 103
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFG 129
G + + C + P YW K ++ +Y L + + L I+ ++D G
Sbjct: 127 GHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS---LKDGF-----LQIENSREEDQG 178
Query: 130 AYKCVSKNSLG 140
Y+CV++NS+G
Sbjct: 179 KYECVAENSMG 189
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
PP I + Q G G + C + P W K ++ S+Y +L+ I
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRY--TVLEQPGGI 63
Query: 115 HMKLTIKAVTK-QDFGAYKCVSKNSLGD---TDGSIKLY 149
+ L I+ V +D Y+CV++N +GD D ++ +Y
Sbjct: 64 SI-LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIY 101
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFG 129
G + + C + P YW K ++ +Y L + + L I+ ++D G
Sbjct: 125 GHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS---LKDGF-----LQIENSREEDQG 176
Query: 130 AYKCVSKNSLG 140
Y+CV++NS+G
Sbjct: 177 KYECVAENSMG 187
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 68 MEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQD 127
+EG +C E YP W K++ + + S++ +D + + LTI V D
Sbjct: 54 VEGSAARFDCKVEGYPDPEVMWFKDDNPV--KESRH--FQIDYDEEGNCSLTISEVCGDD 109
Query: 128 FGAYKCVSKNSLGDTDGSIKL 148
Y C + NSLG+ + +L
Sbjct: 110 DAKYTCKAVNSLGEATCTAEL 130
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 68 MEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQD 127
+EG +C E YP W K++ + + S++ +D + + LTI V D
Sbjct: 54 VEGSAARFDCKVEGYPDPEVMWFKDDNPV--KESRH--FQIDYDEEGNCSLTISEVCGDD 109
Query: 128 FGAYKCVSKNSLGDTDGSIKL 148
Y C + NSLG+ + +L
Sbjct: 110 DAKYTCKAVNSLGEATCTAEL 130
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 67 AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQ 126
+ G + C + PK W K+ ++ +Q ++E I D + +++ T +
Sbjct: 18 GVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ--RFETIEFDESAGAVLRIQ-PLRTPR 74
Query: 127 DFGAYKCVSKNSLGDTDGSIKL 148
D Y+CV++NS+G+ KL
Sbjct: 75 DENVYECVAQNSVGEITVHAKL 96
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
PP + + + G + C + PK W K+ ++ +Q ++E I D +
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ--RFETIEFDESAGA 63
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+++ T +D Y+CV++NS+G+ KL
Sbjct: 64 VLRIQ-PLRTPRDENVYECVAQNSVGEITVHAKL 96
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
PP + + + G + C + PK W K+ ++ +Q ++E I D +
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ--RFETIEFDESAGA 63
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+++ T +D Y+CV++NS+G+ KL
Sbjct: 64 VLRIQ-PLRTPRDENVYECVAQNSVGEITVHAKL 96
>pdb|3RBG|A Chain A, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|B Chain B, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|C Chain C, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|D Chain D, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
Length = 124
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 61 QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI------ 114
+ + EG +TL+C + S W +G I P+L ++ Y++
Sbjct: 7 HTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEY--PVLKNSKYQLLHHSAN 64
Query: 115 HMKLTIKAVTKQDFGAYKCV 134
+ +T+ VT QD G YKC+
Sbjct: 65 QLSITVPNVTLQDEGVYKCL 84
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 16/86 (18%)
Query: 69 EGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMK------LTIKA 122
EG ++C P W + +P+ D+A+K+ ++ L I+
Sbjct: 23 EGKLCRMDCKVSGLPTPDLSWQLDG----------KPVRPDSAHKMLVRENGVHSLIIEP 72
Query: 123 VTKQDFGAYKCVSKNSLGDTDGSIKL 148
VT +D G Y C++ N G S++L
Sbjct: 73 VTSRDAGIYTCIATNRAGQNSFSLEL 98
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 68 MEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYK-IHMKLTIKAVTKQ 126
M ++L C ++ +P W K I ++ + ++L++ K + L IK +
Sbjct: 225 MVAHTISLLCPAQGFPAPSFRWYK----FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 280
Query: 127 DFGAYKCVSKNSLG 140
D G Y CV NS+G
Sbjct: 281 DSGKYLCVVNNSVG 294
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 68 MEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYK-IHMKLTIKAVTKQ 126
M ++L C ++ +P W K I ++ + ++L++ K + L IK +
Sbjct: 231 MVAHTISLLCPAQGFPAPSFRWYK----FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 286
Query: 127 DFGAYKCVSKNSLG 140
D G Y CV NS+G
Sbjct: 287 DSGKYLCVVNNSVG 300
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Query: 56 PMIWIQNQLVGAMEGDQMTLECHSEAYPKSI-NYWTKENGEIIAQGSKYEPILLDNAYKI 114
P++ + EG++ T+ C + S+ + W +EN + Q D Y+
Sbjct: 212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYER 271
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
LTI + D G + C + N+ G + + L
Sbjct: 272 QATLTISSARVNDSGVFMCYANNTFGSANVTTTL 305
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Query: 56 PMIWIQNQLVGAMEGDQMTLECHSEAYPKSI-NYWTKENGEIIAQGSKYEPILLDNAYKI 114
P++ + EG++ T+ C + S+ + W +EN + Q D Y+
Sbjct: 187 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYER 246
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
LTI + D G + C + N+ G + + L
Sbjct: 247 QATLTISSARVNDSGVFMCYANNTFGSANVTTTL 280
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 13/103 (12%)
Query: 44 TKENGEIIAQVPPMIWIQNQLVGAME------GDQMTLECHSEAYPKSINYWTKENGEII 97
TK+ ++ Q+ + + + G +E G+ + + C + P W K+N ++
Sbjct: 649 TKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLV 708
Query: 98 AQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
I+L + + LTI+ V K+D G Y C + + LG
Sbjct: 709 EDSG----IVLKDGNR---NLTIRRVRKEDEGLYTCQACSVLG 744
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 50 IIAQVPPMIW--IQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPIL 107
++ +V P I ++NQ G+ + + C + P W K+N ++ I+
Sbjct: 5 VLERVAPTITGNLENQTTSI--GESIEVSCTASGNPPPQIMWFKDNETLVEDSG----IV 58
Query: 108 LDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
L + + LTI+ V K+D G Y C + + LG
Sbjct: 59 LKDGNR---NLTIRRVRKEDEGLYTCQACSVLG 88
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 59 WIQNQLVG-AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMK 117
+I NQ + + EG+ + + C ++ P + +W ++ + A+ + L + M
Sbjct: 103 FISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTN---LKTYSTGRKMI 159
Query: 118 LTIKAVTKQDFGAYKCVSKNSLG 140
L I + DFG Y C + N +G
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHIG 182
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAY 112
Q P +I LV + + TL C E P+ W K +GE ++ K +
Sbjct: 8 QSPRIIEHPTDLV-VKKNEPATLNCKVEGKPEPTIEWFK-DGEPVSTNEKKSHRVQFKDG 65
Query: 113 KIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
+ T++ +QD G Y CV+KN +G
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVG 93
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAY 112
Q P +I LV + + TL C E P+ W K +GE ++ K +
Sbjct: 8 QSPRIIEHPTDLV-VKKNEPATLNCKVEGKPEPTIEWFK-DGEPVSTNEKKSHRVQFKDG 65
Query: 113 KIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
+ T++ +QD G Y CV+KN +G
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVG 93
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 59 WIQNQLVG-AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMK 117
+I NQ + + EG+ + + C ++ P + +W ++ + A+ + L + M
Sbjct: 103 FISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTN---LKTYSTGRKMI 159
Query: 118 LTIKAVTKQDFGAYKCVSKNSLG 140
L I + DFG Y C + N +G
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHIG 182
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFG 129
G+ L C P W + E+I Q KY+ + + + H LT+ ++D G
Sbjct: 22 GEAAQLSCQIVGRPLPDIKWYRFGKELI-QSRKYK---MSSDGRTHT-LTVMTEEQEDEG 76
Query: 130 AYKCVSKNSLGDTDGSIKL 148
Y C++ N +G+ + S KL
Sbjct: 77 VYTCIATNEVGEVETSSKL 95
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 71 DQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYK-IHMKLTIK-AVTKQDF 128
+++TL C + A P + W K NG + G D+ Y+ + L I V +D
Sbjct: 23 EKVTLTCRARANPPATYRW-KMNGTELKMGP-------DSRYRLVAGDLVISNPVKAKDA 74
Query: 129 GAYKCVSKNSLG 140
G+Y+CV+ N+ G
Sbjct: 75 GSYQCVATNARG 86
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
Query: 67 AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQ 126
A+ G +TLEC + P W K +G ++ EP+ L I+ V +
Sbjct: 219 ALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPL-----------LHIQNVDFE 267
Query: 127 DFGAYKCVSKNSLG 140
D G Y+C ++N G
Sbjct: 268 DEGTYECEAENIKG 281
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 40/164 (24%)
Query: 21 AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQ---VPPMIWIQNQLVGAMEGDQMTLEC 77
A+ G +TLEC + P W K +G ++ P++ IQN D+ T EC
Sbjct: 219 ALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFE----DEGTYEC 274
Query: 78 HSE---------------AYPKSINYWTKENGEI--------IAQGSKY---------EP 105
+E A P ++ T +I +A G +P
Sbjct: 275 EAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQP 334
Query: 106 ILLDNAYKIHM-KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ N ++ +L + +D G Y+CV++N G S +L
Sbjct: 335 LASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAEL 378
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 69 EGDQMTLECHSEAYPKSINYWTKENGE---IIAQGSKYEPILLDNAYKIHMKLTIKAVTK 125
E + + L C + W + G+ ++ +K D + +T K+VT+
Sbjct: 18 ENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR 77
Query: 126 QDFGAYKCVSKNSLGDTDGSIKL 148
+D G Y C+ G++ G +K+
Sbjct: 78 EDTGTYTCMVSEEGGNSYGEVKV 100
>pdb|3U46|L Chain L, Ch04hCH02L P212121
pdb|3U46|B Chain B, Ch04hCH02L P212121
pdb|3U4B|L Chain L, Ch04hCH02L FAB P4
Length = 215
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 70 GDQMTLECHSE--AYPKSINYWTKENGE----IIAQGSKYEPILLDN----AYKIHMKLT 119
G++ TL C + +P+ ++ ++ G+ +I GS + D +H LT
Sbjct: 16 GERATLSCRASQNVHPRYFAWYQQKRGQSPRLLIHSGSTRAAGIADRFSGGGSGMHFTLT 75
Query: 120 IKAVTKQDFGAYKC 133
I V +DF Y C
Sbjct: 76 ITRVEPEDFAVYFC 89
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
Length = 104
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 69 EGDQMTLECHSEAYPKSINYWTKENGE---IIAQGSKYEPILLDNAYKIHMKLTIKAVTK 125
E + + L C + W + G+ ++ +K D + +T K+VT+
Sbjct: 17 ENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR 76
Query: 126 QDFGAYKCVSKNSLGDTDGSIKL 148
+D G Y C+ G++ G +K+
Sbjct: 77 EDTGTYTCMVSEEGGNSYGEVKV 99
>pdb|3MJG|X Chain X, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
pdb|3MJG|Y Chain Y, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
Length = 289
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 69 EGDQMTLEC---HSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTK 125
+G+ +TL C +E Y KE+G ++ + + LLD Y I L I +
Sbjct: 195 QGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDF---LLDMPYHIRSILHIPSAEL 251
Query: 126 QDFGAYKCVSKNSLGD 141
+D G Y C S+ D
Sbjct: 252 EDSGTYTCNVTESVND 267
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 45 KENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWT-KENG---EIIAQG 100
K N I + P I + EG + C S YP W KENG EI
Sbjct: 82 KANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSS 141
Query: 101 SKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
++ I +N ++++ + +D G Y+C + NS+G S L
Sbjct: 142 GRFFIINKENYTELNI---VNLQITEDPGEYECNATNSIGSASVSTVL 186
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 118 LTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L + V D GAY CV+KN G+ +++L
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQL 94
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 14/98 (14%)
Query: 55 PPMIWIQNQLVGAME-GDQMTLECHSEA-YPKSINYWTK-ENGEIIAQGSKYEPILLDNA 111
P M+ ++ Q ++ G +T C +++ P WT+ NG++ ++ + IL
Sbjct: 9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGIL---- 64
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
TI+ V D G Y C N G+ L+
Sbjct: 65 -------TIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 69 EGDQMTLECHSEAYPKSIN-YWTKENGEI--IAQGSKYEPILLDNAYKIHMKLTIKAVTK 125
+GD T+ C + S+N W K N + IAQ D Y+ LTI +
Sbjct: 202 KGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARV 261
Query: 126 QDFGAYKCVSKNSLGDTDGSIKL 148
D G + C + N+ G + + L
Sbjct: 262 DDSGVFMCYANNTFGSANVTTTL 284
>pdb|1V63|A Chain A, Solution Structure Of The 6th Hmg Box Of Mouse Ubf1
Length = 101
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 112 YKIHMKLTIKAVTKQDFGAYK--CVSKNSLGDTDG 144
YK+H+ L +K+++ QD AYK +K G + G
Sbjct: 67 YKVHLDLWVKSLSPQDRAAYKEYISNKRKSGPSSG 101
>pdb|1PG7|X Chain X, Murine 6a6 Fab In Complex With Humanized Anti-Tissue
Factor D3h44 Fab
pdb|1PG7|Z Chain Z, Murine 6a6 Fab In Complex With Humanized Anti-Tissue
Factor D3h44 Fab
Length = 220
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 17 QLVGAMEGDQMTLECHSE--AYPKSINYWTKENGEIIAQ---VPPMIWIQNQLVGAMEGD 71
+LV D C E Y S++YW + ++ PP ++ + G G
Sbjct: 82 ELVRLTSNDSAVYYCAREDFRYHYSMDYWGQGTSVTVSSAKTTPPSVYPLAPVCGDTTGS 141
Query: 72 QMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
+TL C + Y T +G + + + +L + Y +
Sbjct: 142 SVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTL 184
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 60 IQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHM--- 116
++ +L + +C S P+ W K G +++P YK+
Sbjct: 22 MEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLK-------NGKEFKPDHRIGGYKVRYATW 74
Query: 117 KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ + +V D G Y C+ +N G + + +L
Sbjct: 75 SIIMDSVVPSDKGNYTCIVENEYGSINHTYQL 106
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 60 IQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHM--- 116
++ +L + +C S P+ W K G +++P YK+
Sbjct: 21 MEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLK-------NGKEFKPDHRIGGYKVRYATW 73
Query: 117 KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ + +V D G Y C+ +N G + + +L
Sbjct: 74 SIIMDSVVPSDKGNYTCIVENEYGSINHTYQL 105
>pdb|1OGA|D Chain D, A Structural Basis For Immunodominant Human T-Cell
Receptor Recognition
Length = 215
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 19/104 (18%)
Query: 49 EIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE-------IIAQGS 101
+++ Q P + IQ EG+ +T+ C+S + S+ ++ +E GE ++ G
Sbjct: 2 QLLEQSPQFLSIQ-------EGENLTVYCNSSSVFSSLQWYRQEPGEGPVLLVTVVTGGE 54
Query: 102 ----KYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGD 141
K +A K L I A D G Y C S G+
Sbjct: 55 VKKLKRLTFQFGDARK-DSSLHITAAQPGDTGLYLCAGAGSQGN 97
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 60 IQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLT 119
++ +L + + C + P W K NG+ Q + + N H L
Sbjct: 13 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKVRNQ---HWSLI 68
Query: 120 IKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+++V D G Y CV +N G + + L
Sbjct: 69 MESVVPSDKGNYTCVVENEYGSINHTYHL 97
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 60 IQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLT 119
++ +L + + C + P W K NG+ Q + + N H L
Sbjct: 18 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKVRNQ---HWSLI 73
Query: 120 IKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+++V D G Y CV +N G + + L
Sbjct: 74 MESVVPSDKGNYTCVVENEYGSINHTYHL 102
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 60 IQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHM--- 116
++ +L + +C S P W K G +++P YK+
Sbjct: 21 MEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLK-------NGKEFKPDHRIGGYKVRYATW 73
Query: 117 KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ + +V D G Y C+ +N G + + +L
Sbjct: 74 SIIMDSVVPSDKGNYTCIVENEYGSINHTYQL 105
>pdb|2XN9|A Chain A, Crystal Structure Of The Ternary Complex Between Human T
Cell Receptor, Staphylococcal Enterotoxin H And Human
Major Histocompatibility Complex Class Ii
pdb|2XNA|A Chain A, Crystal Structure Of The Complex Between Human T Cell
Receptor And Staphylococcal Enterotoxin
Length = 204
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 19/104 (18%)
Query: 49 EIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE-------IIAQGS 101
+++ Q P + IQ EG+ +T+ C+S + S+ ++ +E GE ++ G
Sbjct: 2 QLLEQSPQFLSIQ-------EGENLTVYCNSSSVFSSLQWYRQEPGEGPVLLVTVVTGGE 54
Query: 102 ----KYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGD 141
K +A K L I A D G Y C S G+
Sbjct: 55 VKKLKRLTFQFGDARK-DSSLHITAAQPGDTGLYLCAGAGSQGN 97
>pdb|2VLJ|D Chain D, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLK|D Chain D, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLM|D Chain D, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLR|D Chain D, The Structural Dynamics And Energetics Of An
Immunodominant T-cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLR|I Chain I, The Structural Dynamics And Energetics Of An
Immunodominant T-cell Receptor Are Programmed By Its
Vbeta Domain
Length = 201
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 19/104 (18%)
Query: 49 EIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE-------IIAQGS 101
+++ Q P + IQ EG+ +T+ C+S + S+ ++ +E GE ++ G
Sbjct: 2 QLLEQSPQFLSIQ-------EGENLTVYCNSSSVFSSLQWYRQEPGEGPVLLVTVVTGGE 54
Query: 102 ----KYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGD 141
K +A K L I A D G Y C S G+
Sbjct: 55 VKKLKRLTFQFGDARK-DSSLHITAAQPGDTGLYLCAGAGSQGN 97
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 69 EGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDF 128
EG C A + W K++ E+ Q KY N Y LTI V D
Sbjct: 496 EGQSANFYCRVIASSPPVVTWHKDDREL-KQSVKYMKRYNGNDYG----LTINRVKGDDK 550
Query: 129 GAYKCVSKNSLG 140
G Y +KNS G
Sbjct: 551 GEYTVRAKNSYG 562
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 60 IQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI---HM 116
++ +L + + C + P W K NG+ Q + YK+ H
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRI------GGYKVRNQHW 68
Query: 117 KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L +++V D G Y CV +N G + + L
Sbjct: 69 SLIMESVVPSDKGNYTCVVENEYGSINHTYHL 100
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 60 IQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLT 119
++ +L + + C + P W K NG+ Q + + N H L
Sbjct: 17 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKVRNQ---HWSLI 72
Query: 120 IKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+++V D G Y CV +N G + + L
Sbjct: 73 MESVVPSDKGNYTCVVENEYGSINHTYHL 101
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 69 EGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDF 128
EG C A + W K++ E+ Q KY N Y LTI V D
Sbjct: 390 EGQSANFYCRVIASSPPVVTWHKDDREL-KQSVKYMKRYNGNDYG----LTINRVKGDDK 444
Query: 129 GAYKCVSKNSLG 140
G Y +KNS G
Sbjct: 445 GEYTVRAKNSYG 456
>pdb|1MLB|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme
pdb|1MLC|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
pdb|1MLC|C Chain C, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
Length = 214
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 70 GDQMTLECH-SEAYPKSINYWTKENGE-------IIAQGSKYEPILLD-NAYKIHMKLTI 120
GD ++L C S++ +++++ +++ E ++Q S P + L+I
Sbjct: 16 GDSVSLSCRASQSISNNLHWYQQKSHESPRLLIKYVSQSSSGIPSRFSGSGSGTDFTLSI 75
Query: 121 KAVTKQDFGAYKCVSKNSLGDTDG 144
+V +DFG Y C NS T G
Sbjct: 76 NSVETEDFGMYFCQQSNSWPRTFG 99
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 30/148 (20%)
Query: 17 QLVGAMEGDQMTLECHSEAYPKSINYW---------TKENGEIIAQVPPMIWIQNQLVGA 67
+L G Q T++ +AY ++ + K ++ +P ++ IQ
Sbjct: 77 ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQ------ 130
Query: 68 MEGDQMTLECHSEAYPKSINYWTKENGEIIAQGS----KYEPILLDNAYKIHMKLTIKAV 123
EG + L C+ P W K N + +AQ K+E AY TI V
Sbjct: 131 -EGKALNLTCNVWGDPPPEVSWLK-NEKALAQTDHCNLKFEA--GRTAY-----FTINGV 181
Query: 124 TKQDFGAYKCVSKNSLGD--TDGSIKLY 149
+ D G Y V KN G +D ++ ++
Sbjct: 182 STADSGKYGLVVKNKYGSETSDFTVSVF 209
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 60 IQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI---HM 116
++ +L + + C + P W K NG+ Q + YK+ H
Sbjct: 15 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRI------GGYKVRNQHW 67
Query: 117 KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L +++V D G Y CV +N G + + L
Sbjct: 68 SLIMESVVPSDKGNYTCVVENEYGSINHTYHL 99
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 10/91 (10%)
Query: 61 QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI---HMK 117
+ +L + + C + P W K NG+ Q + YK+ H
Sbjct: 17 EKRLHAVPAANTVKFRCPAGGNPXPTXRWLK-NGKEFKQEHRI------GGYKVRNQHWS 69
Query: 118 LTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L ++V D G Y CV +N G + + L
Sbjct: 70 LIXESVVPSDKGNYTCVVENEYGSINHTYHL 100
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 60 IQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI---HM 116
++ +L + + C + P W K NG+ Q + YK+ H
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRI------GGYKVRNQHW 68
Query: 117 KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L +++V D G Y CV +N G + + L
Sbjct: 69 SLIMESVVPSDKGNYTCVVENEYGSINHTYHL 100
>pdb|3I9G|L Chain L, Crystal Structure Of The Lt1009 (Sonepcizumab) Antibody
Fab Fragment In Complex With Sphingosine-1-Phosphate
Length = 213
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 86 INYWTKENGE----IIAQGSKYEP----ILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKN 137
+N++ +E G+ +I++G+ P + Y LTI + +DF Y C+ +
Sbjct: 33 MNWFQQEPGKAPKLLISEGNILRPGVPSRFSSSGYGTDFTLTISKLQPEDFATYYCLQSD 92
Query: 138 SLGDTDG 144
+L T G
Sbjct: 93 NLPFTFG 99
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 60 IQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI---HM 116
++ +L + + C + P W K NG+ Q + YK+ H
Sbjct: 14 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRI------GGYKVRNQHW 66
Query: 117 KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L +++V D G Y CV +N G + + L
Sbjct: 67 SLIMESVVPSDKGNYTCVVENEYGSINHTYHL 98
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 68 MEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYE-PILLDNAYKIHMKLTIKAVTKQ 126
EG +T C PK YW K+ +I + Y LD +H A T
Sbjct: 20 FEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLH----TTASTLD 75
Query: 127 DFGAYKCVSKNSLGDTDGSIKL 148
D G Y ++ N G + +L
Sbjct: 76 DDGNYTIMAANPQGRVSCTGRL 97
>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
pdb|2BUJ|B Chain B, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
Length = 317
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 97 IAQGSKYEPILLD----NAYKIHMKLTIKAVTKQDFGAYKCV 134
I G + +P+L+D N IH++ + +A+T QD+ A +C
Sbjct: 165 ILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCT 206
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 60 IQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI---HM 116
++ +L + + C + P W K NG+ Q + YK+ H
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRI------GGYKVRNQHW 68
Query: 117 KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L +++V D G Y CV +N G + + L
Sbjct: 69 SLIMESVVPSDKGNYTCVVENEYGSINHTYHL 100
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFG 129
G+ C + P+SI+++ + +II+ ++ + +LTI +D G
Sbjct: 17 GESKFFTCTAIGEPESIDWYNPQGEKIISTQR-----VVVQKEGVRSRLTIYNANIEDAG 71
Query: 130 AYKCVSKNSLGDT 142
Y+C + ++ G T
Sbjct: 72 IYRCQATDAKGQT 84
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 60 IQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLT 119
++ +L + + C + P W K NG+ Q + + N H L
Sbjct: 24 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKVRNQ---HWSLI 79
Query: 120 IKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+++V D G Y CV +N G + + L
Sbjct: 80 MESVVPSDKGNYTCVVENEYGSINHTYHL 108
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFG 129
G+ C + P+SI+++ + +II+ ++ + +LTI +D G
Sbjct: 15 GESKFFTCTAIGEPESIDWYNPQGEKIISTQR-----VVVQKEGVRSRLTIYNANIEDAG 69
Query: 130 AYKCVSKNSLGDT 142
Y+C + ++ G T
Sbjct: 70 IYRCQATDAKGQT 82
>pdb|1KE2|A Chain A, Pseudomonas Serine-carboxyl Proteinase Complexed With The
Inhibitor Chymostatin (this Enzyme Renamed "sedolisin"
In 2003)
pdb|1KE1|A Chain A, Pseudomonas Serine-Carboxyl Proteinase Complexed With The
Inhibitor Pseudotyrostatin (This Enzyme Renamed
"sedolisin" In 2003)
pdb|1KDZ|A Chain A, Pseudomonas Serine-Carboxyl Proteinase Complexed With The
Inhibitor Tyrostatin (This Enzyme Renamed "sedolisin" In
2003)
pdb|1KDY|A Chain A, Pseudomonas Serine-carboxyl Proteinase Complexed With The
Inhibitor Aipf (this Enzyme Renamed "sedolisin" In 2003)
pdb|1KDV|A Chain A, Pseudomonas Serine-Carboxyl Proteinase Complexed With The
Inhibitor Aiaf (This Enzyme Renamed "sedolisin" In 2003)
pdb|1NLU|A Chain A, Pseudomonas Sedolisin (Serine-Carboxyl Proteinase)
Complexed With Two Molecules Of Pseudo-Iodotyrostatin
Length = 370
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 61 QNQLVGAMEGDQMTLECHSEAYPKSINY---WTKENGEIIAQG 100
Q Q GD+ EC++ YP Y W + +IA G
Sbjct: 160 QGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVG 202
>pdb|1GA1|A Chain A, Crystal Structure Analysis Of Pscp (Pseudomonas
Serine-Carboxyl Proteinase) Complexed With A Fragment Of
Iodotyrostatin (This Enzyme Renamed "sedolisin" In 2003)
pdb|1GA4|A Chain A, Crystal Structure Analysis Of Pscp (Pseudomonas
Serine-Carboxyl Proteinase) Complexed With Inhibitor
Pseudoiodotyrostatin (This Enzyme Renamed "sedolisin" In
2003)
pdb|1GA6|A Chain A, Crystal Structure Analysis Of Pscp (Pseudomonas
Serine-Carboxyl Proteinase) Complexed With A Fragment Of
Tyrostatin (This Enzyme Renamed "sedolisin" In 2003)
Length = 372
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 61 QNQLVGAMEGDQMTLECHSEAYPKSINY---WTKENGEIIAQG 100
Q Q GD+ EC++ YP Y W + +IA G
Sbjct: 160 QGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVG 202
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 21/101 (20%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTK------ENGEIIAQGSKYEPILL 108
P I +Q + V A+ G +TLEC + P W K EI G+
Sbjct: 113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGA------- 165
Query: 109 DNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
L I + +D G Y+C ++N G ++Y
Sbjct: 166 --------VLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,846,686
Number of Sequences: 62578
Number of extensions: 191646
Number of successful extensions: 822
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 203
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)