Query psy16426
Match_columns 194
No_of_seqs 125 out of 1312
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 20:58:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.8 1.5E-17 3.1E-22 143.6 13.0 144 4-155 326-518 (1051)
2 KOG3513|consensus 99.7 2.4E-17 5.3E-22 142.2 13.3 139 8-153 239-423 (1051)
3 cd05762 Ig8_MLCK Eighth immuno 99.7 1.6E-16 3.5E-21 104.2 13.2 97 56-157 1-97 (98)
4 cd05735 Ig8_DSCAM Eight immuno 99.7 1.4E-15 3.1E-20 97.8 11.3 87 70-157 1-88 (88)
5 cd05851 Ig3_Contactin-1 Third 99.6 1.9E-14 4.2E-19 92.5 10.9 87 55-150 1-87 (88)
6 cd05773 Ig8_hNephrin_like Eigh 99.6 2E-14 4.4E-19 96.0 11.2 103 52-155 1-109 (109)
7 cd05737 Ig_Myomesin_like_C C-t 99.6 5.4E-14 1.2E-18 91.2 12.0 86 61-150 7-92 (92)
8 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 6.3E-14 1.4E-18 89.7 12.1 82 64-150 4-86 (86)
9 cd04975 Ig4_SCFR_like Fourth i 99.6 6.5E-14 1.4E-18 92.2 12.3 88 63-151 11-100 (101)
10 cd05747 Ig5_Titin_like M5, fif 99.6 5.7E-14 1.2E-18 91.0 11.8 89 55-148 3-91 (92)
11 KOG4221|consensus 99.6 8.6E-14 1.9E-18 120.9 14.0 145 4-155 135-330 (1381)
12 KOG4194|consensus 99.6 3.5E-14 7.5E-19 116.3 10.8 142 8-155 502-708 (873)
13 cd05869 Ig5_NCAM-1 Fifth immun 99.6 9.6E-14 2.1E-18 90.9 10.9 93 55-150 2-97 (97)
14 PF07679 I-set: Immunoglobulin 99.5 2.3E-13 5E-18 87.6 12.2 90 56-150 1-90 (90)
15 cd05865 Ig1_NCAM-1 First immun 99.5 2.3E-13 4.9E-18 88.8 11.6 88 60-150 5-95 (96)
16 cd05892 Ig_Myotilin_C C-termin 99.5 9.9E-14 2.2E-18 86.3 9.5 74 73-150 1-75 (75)
17 cd05730 Ig3_NCAM-1_like Third 99.5 2.5E-13 5.4E-18 88.5 11.1 90 55-151 1-93 (95)
18 cd05745 Ig3_Peroxidasin Third 99.5 1.4E-13 3E-18 85.6 9.3 74 69-150 1-74 (74)
19 cd05891 Ig_M-protein_C C-termi 99.5 3.8E-13 8.3E-18 87.2 11.5 86 61-150 7-92 (92)
20 KOG4194|consensus 99.5 1.1E-13 2.3E-18 113.5 10.6 144 3-153 606-798 (873)
21 cd05852 Ig5_Contactin-1 Fifth 99.5 2.2E-13 4.8E-18 84.4 9.5 73 70-150 1-73 (73)
22 cd05732 Ig5_NCAM-1_like Fifth 99.5 3E-13 6.4E-18 88.3 10.6 90 55-150 2-96 (96)
23 cd04972 Ig_TrkABC_d4 Fourth do 99.5 7.7E-13 1.7E-17 85.4 12.1 84 62-150 7-90 (90)
24 cd05893 Ig_Palladin_C C-termin 99.5 2.1E-13 4.6E-18 84.9 9.1 74 73-150 1-75 (75)
25 cd04968 Ig3_Contactin_like Thi 99.5 5.2E-13 1.1E-17 85.8 11.2 86 56-150 2-87 (88)
26 cd05859 Ig4_PDGFR-alpha Fourth 99.5 4.2E-13 9.2E-18 88.3 10.8 87 64-151 12-100 (101)
27 cd05870 Ig5_NCAM-2 Fifth immun 99.5 4.9E-13 1.1E-17 87.7 11.0 91 55-150 2-98 (98)
28 cd05748 Ig_Titin_like Immunogl 99.5 6.2E-13 1.4E-17 82.6 10.8 74 72-150 1-74 (74)
29 cd05867 Ig4_L1-CAM_like Fourth 99.5 5.7E-13 1.2E-17 83.2 9.9 74 70-150 1-75 (76)
30 cd05744 Ig_Myotilin_C_like Imm 99.5 5.8E-13 1.3E-17 83.0 9.9 74 73-150 1-75 (75)
31 cd05866 Ig1_NCAM-2 First immun 99.5 1.7E-12 3.7E-17 83.9 12.1 87 59-150 4-91 (92)
32 cd05868 Ig4_NrCAM Fourth immun 99.5 6.4E-13 1.4E-17 83.0 9.4 76 70-151 1-76 (76)
33 cd05857 Ig2_FGFR Second immuno 99.5 1.1E-12 2.3E-17 83.7 10.5 82 65-150 4-85 (85)
34 cd07693 Ig1_Robo First immunog 99.5 1.9E-12 4.2E-17 84.7 12.0 94 55-150 1-99 (100)
35 cd05728 Ig4_Contactin-2-like F 99.5 8.5E-13 1.8E-17 84.2 10.0 81 61-150 5-85 (85)
36 KOG4221|consensus 99.5 2E-13 4.4E-18 118.6 8.5 140 10-157 238-422 (1381)
37 cd05723 Ig4_Neogenin Fourth im 99.5 1.3E-12 2.7E-17 80.5 9.7 71 72-150 1-71 (71)
38 cd04969 Ig5_Contactin_like Fif 99.5 1.2E-12 2.6E-17 81.1 9.6 73 70-150 1-73 (73)
39 cd05758 Ig5_KIRREL3-like Fifth 99.5 3.2E-12 7E-17 83.8 12.0 92 55-148 2-97 (98)
40 KOG4222|consensus 99.4 4.4E-13 9.5E-18 116.0 9.6 144 6-155 28-227 (1281)
41 cd05764 Ig_2 Subgroup of the i 99.4 2.4E-12 5.3E-17 79.9 10.4 74 70-150 1-74 (74)
42 cd04978 Ig4_L1-NrCAM_like Four 99.4 1.5E-12 3.3E-17 81.1 9.5 75 70-150 1-75 (76)
43 PHA02826 IL-1 receptor-like pr 99.4 5.6E-12 1.2E-16 94.6 14.1 118 17-141 30-213 (227)
44 cd04977 Ig1_NCAM-1_like First 99.4 5.5E-12 1.2E-16 81.7 12.1 88 59-150 4-92 (92)
45 cd05863 Ig2_VEGFR-3 Second imm 99.4 9.2E-13 2E-17 80.0 7.5 65 73-150 1-65 (67)
46 cd05855 Ig_TrkB_d5 Fifth domai 99.4 2.8E-12 6.1E-17 80.3 9.3 75 74-149 2-77 (79)
47 cd05854 Ig6_Contactin-2 Sixth 99.4 3.7E-12 8E-17 81.3 9.9 80 71-154 1-85 (85)
48 cd05743 Ig_Perlecan_D2_like Im 99.4 3.8E-12 8.2E-17 79.9 9.3 71 70-145 1-71 (78)
49 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 6.4E-12 1.4E-16 79.4 9.9 75 74-149 2-79 (81)
50 cd05763 Ig_1 Subgroup of the i 99.4 3.4E-12 7.4E-17 79.4 8.4 74 73-150 1-74 (75)
51 cd05746 Ig4_Peroxidasin Fourth 99.4 3E-12 6.5E-17 78.4 7.9 68 73-148 1-68 (69)
52 cd05856 Ig2_FGFRL1-like Second 99.4 4E-12 8.6E-17 80.3 8.7 79 65-150 4-82 (82)
53 cd05726 Ig4_Robo Fhird immunog 99.4 2.4E-12 5.1E-17 83.1 7.7 78 70-154 1-85 (90)
54 cd05876 Ig3_L1-CAM Third immun 99.4 1.8E-12 3.8E-17 79.9 6.8 70 73-150 1-70 (71)
55 cd05858 Ig3_FGFR-2 Third immun 99.4 5.9E-12 1.3E-16 81.2 9.4 81 70-150 1-89 (90)
56 cd05760 Ig2_PTK7 Second immuno 99.4 7.4E-12 1.6E-16 78.3 9.4 72 73-151 1-75 (77)
57 cd04970 Ig6_Contactin_like Six 99.4 5.6E-12 1.2E-16 80.4 8.9 80 71-154 1-85 (85)
58 cd05850 Ig1_Contactin-2 First 99.4 3E-11 6.4E-16 78.5 11.9 86 56-148 2-92 (94)
59 cd05740 Ig_CEACAM_D4 Fourth im 99.4 1.6E-11 3.5E-16 79.3 10.5 86 56-150 2-90 (91)
60 cd05848 Ig1_Contactin-5 First 99.4 1.8E-11 3.9E-16 79.6 10.6 82 56-144 2-87 (94)
61 cd05765 Ig_3 Subgroup of the i 99.4 4.3E-12 9.4E-17 80.0 7.4 77 70-150 1-81 (81)
62 cd05898 Ig5_KIRREL3 Fifth immu 99.3 3.3E-11 7.1E-16 78.5 11.6 93 55-148 2-97 (98)
63 cd04976 Ig2_VEGFR Second immun 99.3 1E-11 2.2E-16 76.5 8.3 69 73-150 1-69 (71)
64 cd05725 Ig3_Robo Third immunog 99.3 1.2E-11 2.5E-16 75.7 8.5 69 73-150 1-69 (69)
65 cd04974 Ig3_FGFR Third immunog 99.3 1.4E-11 3.1E-16 79.4 9.1 81 70-150 1-89 (90)
66 cd05853 Ig6_Contactin-4 Sixth 99.3 8.2E-12 1.8E-16 79.3 7.8 80 71-154 1-85 (85)
67 cd05724 Ig2_Robo Second immuno 99.3 3.4E-11 7.4E-16 76.7 10.5 80 62-149 3-85 (86)
68 cd05722 Ig1_Neogenin First imm 99.3 4.1E-11 8.8E-16 78.0 10.9 84 61-150 5-95 (95)
69 cd05736 Ig2_Follistatin_like S 99.3 1.8E-11 3.9E-16 76.3 8.8 73 74-151 2-74 (76)
70 cd04973 Ig1_FGFR First immunog 99.3 2.5E-11 5.4E-16 76.3 9.3 78 63-150 2-79 (79)
71 cd05739 Ig3_RPTP_IIa_LAR_like 99.3 2.3E-11 5.1E-16 74.4 8.8 68 70-148 1-68 (69)
72 cd05756 Ig1_IL1R_like First im 99.3 2.2E-11 4.9E-16 79.1 8.9 81 64-150 8-94 (94)
73 cd05742 Ig1_VEGFR_like First i 99.3 2.3E-11 4.9E-16 77.4 8.8 81 70-150 1-83 (84)
74 cd05731 Ig3_L1-CAM_like Third 99.3 1.1E-11 2.3E-16 76.2 7.0 70 73-150 1-70 (71)
75 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 2.3E-11 5E-16 75.5 8.5 72 73-150 1-73 (74)
76 cd05864 Ig2_VEGFR-2 Second imm 99.3 1.1E-11 2.4E-16 76.0 6.9 66 74-149 2-67 (70)
77 KOG4222|consensus 99.3 5.9E-12 1.3E-16 109.2 7.1 143 3-145 219-405 (1281)
78 PHA02785 IL-beta-binding prote 99.3 2.1E-10 4.5E-15 90.9 14.5 132 10-143 122-319 (326)
79 cd05861 Ig1_PDGFR-alphabeta Fr 99.3 1.4E-10 3.1E-15 73.7 10.9 81 70-151 1-83 (84)
80 cd05729 Ig2_FGFR_like Second i 99.3 2.6E-10 5.7E-15 72.3 11.5 82 65-150 4-85 (85)
81 cd05849 Ig1_Contactin-1 First 99.2 2.2E-10 4.7E-15 74.3 11.0 84 56-148 2-91 (93)
82 cd05734 Ig7_DSCAM Seventh immu 99.2 4E-11 8.6E-16 75.4 6.7 71 73-150 1-79 (79)
83 cd05750 Ig_Pro_neuregulin Immu 99.2 9.5E-11 2.1E-15 72.7 8.3 73 73-147 1-74 (75)
84 cd05749 Ig2_Tyro3_like Second 99.2 9.9E-11 2.1E-15 73.8 8.2 71 61-144 4-75 (81)
85 cd04967 Ig1_Contactin First Ig 99.2 3.3E-10 7.1E-15 73.1 10.3 68 70-144 19-87 (91)
86 cd05752 Ig1_FcgammaR_like Frst 99.2 1.8E-10 3.9E-15 72.1 8.7 70 56-141 1-71 (78)
87 cd05754 Ig3_Perlecan_like Thir 99.2 1.6E-10 3.4E-15 73.6 7.7 78 61-149 7-85 (85)
88 cd05882 Ig1_Necl-1 First (N-te 99.2 9.7E-10 2.1E-14 71.4 11.3 72 63-137 5-83 (95)
89 cd05733 Ig6_L1-CAM_like Sixth 99.2 1.7E-10 3.7E-15 72.1 7.3 67 73-144 1-71 (77)
90 PHA02785 IL-beta-binding prote 99.2 5.6E-10 1.2E-14 88.5 11.6 115 19-143 36-204 (326)
91 cd05874 Ig6_NrCAM Sixth immuno 99.2 3.6E-10 7.9E-15 70.6 8.4 67 73-144 1-71 (77)
92 cd05875 Ig6_hNeurofascin_like 99.1 4.9E-10 1.1E-14 70.0 8.8 66 73-145 1-72 (77)
93 cd05895 Ig_Pro_neuregulin-1 Im 99.1 2.6E-10 5.7E-15 71.0 7.4 72 73-147 1-75 (76)
94 cd05860 Ig4_SCFR Fourth immuno 99.1 2.6E-09 5.7E-14 69.4 11.7 89 62-151 10-100 (101)
95 cd07701 Ig1_Necl-3 First (N-te 99.1 1.5E-09 3.3E-14 70.6 10.4 83 63-149 5-94 (95)
96 cd07702 Ig2_VEGFR-1 Second imm 99.1 7.3E-10 1.6E-14 68.2 7.9 65 73-145 1-65 (72)
97 cd05717 Ig1_Necl-1-3_like Firs 99.0 7.7E-09 1.7E-13 67.2 11.3 84 63-150 5-95 (95)
98 cd04979 Ig_Semaphorin_C Immuno 99.0 3.5E-09 7.5E-14 68.0 9.1 83 63-152 4-88 (89)
99 cd05862 Ig1_VEGFR First immuno 99.0 3.2E-09 6.9E-14 67.8 8.4 81 70-151 1-85 (86)
100 cd05753 Ig2_FcgammaR_like Seco 99.0 4.3E-09 9.3E-14 66.7 7.7 69 62-143 6-75 (83)
101 cd05757 Ig2_IL1R_like Second i 99.0 7.6E-09 1.6E-13 66.8 8.9 76 65-149 5-85 (92)
102 smart00409 IG Immunoglobulin. 99.0 5.3E-08 1.1E-12 60.8 12.4 83 64-150 3-85 (86)
103 smart00410 IG_like Immunoglobu 99.0 5.3E-08 1.1E-12 60.8 12.4 83 64-150 3-85 (86)
104 cd05871 Ig_Semaphorin_classIII 98.9 1.3E-08 2.7E-13 65.7 9.4 79 65-152 6-90 (91)
105 cd05845 Ig2_L1-CAM_like Second 98.9 6.2E-09 1.3E-13 67.3 7.5 73 63-142 11-85 (95)
106 cd05727 Ig2_Contactin-2-like S 98.9 6.4E-09 1.4E-13 67.4 6.9 74 63-142 11-86 (96)
107 smart00408 IGc2 Immunoglobulin 98.9 1.6E-08 3.6E-13 59.6 8.2 63 69-140 1-63 (63)
108 cd05873 Ig_Sema4D_like Immunog 98.9 2.8E-08 6E-13 63.4 9.2 67 62-138 3-70 (87)
109 PF13895 Ig_2: Immunoglobulin 98.8 4.1E-08 8.9E-13 61.1 8.9 78 56-150 2-80 (80)
110 cd07690 Ig1_CD4 First immunogl 98.8 3.8E-08 8.3E-13 63.7 7.4 75 66-141 3-90 (94)
111 cd05881 Ig1_Necl-2 First (N-te 98.8 4.2E-07 9E-12 58.9 11.6 73 63-138 5-84 (95)
112 PF13927 Ig_3: Immunoglobulin 98.7 3.3E-08 7.1E-13 60.7 5.8 73 56-137 2-75 (75)
113 cd05885 Ig2_Necl-4 Second immu 98.7 2.1E-07 4.5E-12 58.3 9.3 67 73-142 2-69 (80)
114 PF00047 ig: Immunoglobulin do 98.7 5.4E-08 1.2E-12 58.2 5.9 63 70-135 1-64 (64)
115 cd05897 Ig2_IL1R2_like Second 98.7 1.8E-07 3.9E-12 60.6 8.3 72 66-143 6-82 (95)
116 cd05759 Ig2_KIRREL3-like Secon 98.7 2.8E-07 6E-12 58.1 8.8 76 73-149 2-81 (82)
117 cd05851 Ig3_Contactin-1 Third 98.7 4.3E-08 9.4E-13 62.8 5.1 41 9-49 1-41 (88)
118 cd04980 IgV_L_kappa Immunoglob 98.6 5.6E-07 1.2E-11 59.6 9.5 35 12-46 3-38 (106)
119 cd07693 Ig1_Robo First immunog 98.6 7.7E-08 1.7E-12 62.6 5.2 42 9-50 1-42 (100)
120 cd05896 Ig1_IL1RAPL-1_like Fir 98.6 1E-06 2.3E-11 57.5 9.3 81 64-150 9-104 (104)
121 cd05714 Ig_CSPGs_LP Immunoglob 98.6 1.1E-06 2.4E-11 58.2 9.6 83 69-151 1-103 (106)
122 PHA02826 IL-1 receptor-like pr 98.6 3.1E-07 6.6E-12 69.1 7.5 90 63-152 30-134 (227)
123 cd05747 Ig5_Titin_like M5, fif 98.5 1.5E-07 3.3E-12 60.7 5.0 42 8-49 2-43 (92)
124 cd05899 IgV_TCR_beta Immunoglo 98.5 7.4E-07 1.6E-11 59.4 8.5 76 60-139 3-95 (110)
125 KOG3515|consensus 98.5 4.5E-07 9.8E-12 77.5 9.0 131 9-139 7-186 (741)
126 cd04983 IgV_TCR_alpha_like Imm 98.5 6.6E-07 1.4E-11 59.4 8.0 77 61-139 4-93 (109)
127 cd05713 Ig_MOG_like Immunoglob 98.5 2.1E-06 4.5E-11 56.1 9.4 36 115-150 64-99 (100)
128 cd05751 Ig1_LILRB1_like First 98.5 1.1E-06 2.3E-11 56.6 7.4 74 55-138 2-75 (91)
129 cd05718 Ig1_PVR_like First imm 98.5 2.9E-06 6.4E-11 55.1 9.3 80 71-151 1-98 (98)
130 cd05762 Ig8_MLCK Eighth immuno 98.4 4.8E-07 1E-11 59.1 5.4 41 10-50 1-41 (98)
131 cd05879 Ig_P0 Immunoglobulin ( 98.4 5.5E-06 1.2E-10 55.8 10.6 88 63-150 6-116 (116)
132 cd05877 Ig_LP_like Immunoglobu 98.4 3.2E-06 6.9E-11 55.9 9.4 82 69-151 1-103 (106)
133 cd05749 Ig2_Tyro3_like Second 98.4 3.1E-07 6.7E-12 57.8 4.1 37 13-49 2-39 (81)
134 cd04968 Ig3_Contactin_like Thi 98.4 7.5E-07 1.6E-11 56.9 5.3 41 9-49 1-41 (88)
135 cd05872 Ig_Sema4B_like Immunog 98.4 3E-06 6.4E-11 53.7 7.8 78 63-150 4-82 (85)
136 cd05774 Ig_CEACAM_D1 First imm 98.4 4.2E-06 9E-11 55.3 8.5 88 63-150 6-105 (105)
137 cd05752 Ig1_FcgammaR_like Frst 98.4 1.1E-06 2.4E-11 54.9 5.4 41 10-50 1-42 (78)
138 cd05900 Ig_Aggrecan Immunoglob 98.4 5E-06 1.1E-10 55.6 8.8 38 114-151 72-109 (112)
139 PF07679 I-set: Immunoglobulin 98.4 1.6E-06 3.4E-11 55.4 6.1 41 10-50 1-41 (90)
140 cd05761 Ig2_Necl-1-4_like Seco 98.3 9.5E-06 2.1E-10 51.1 9.5 68 73-142 2-71 (82)
141 cd05850 Ig1_Contactin-2 First 98.3 6.2E-06 1.3E-10 53.4 8.8 42 9-50 1-45 (94)
142 cd05880 Ig_EVA1 Immunoglobulin 98.3 1.1E-05 2.4E-10 54.2 10.1 79 62-140 5-103 (115)
143 cd05848 Ig1_Contactin-5 First 98.3 1.2E-06 2.5E-11 56.8 5.1 41 10-50 2-45 (94)
144 cd04982 IgV_TCR_gamma Immunogl 98.3 4.4E-06 9.6E-11 56.1 8.0 75 61-137 4-98 (116)
145 cd05715 Ig_P0-like Immunoglobu 98.3 1.1E-05 2.4E-10 54.3 9.8 89 62-150 5-116 (116)
146 cd05741 Ig_CEACAM_D1_like Firs 98.3 4.1E-06 8.9E-11 53.7 7.3 77 70-149 1-91 (92)
147 cd05883 Ig2_Necl-2 Second immu 98.3 1.4E-05 3.1E-10 50.2 9.4 77 73-151 2-80 (82)
148 cd00098 IgC Immunoglobulin Con 98.3 4.8E-06 1E-10 53.8 7.5 73 68-141 11-87 (95)
149 cd05878 Ig_Aggrecan_like Immun 98.3 8.3E-06 1.8E-10 54.4 8.6 38 114-151 70-107 (110)
150 cd05771 IgC_Tapasin_R Tapasin- 98.3 6.4E-05 1.4E-09 52.2 13.2 114 22-139 9-131 (139)
151 cd07694 Ig2_CD4 Second immunog 98.3 1.1E-05 2.3E-10 50.9 8.2 74 66-150 10-85 (88)
152 cd04984 IgV_L_lambda Immunoglo 98.3 6.5E-06 1.4E-10 53.6 7.4 69 66-138 2-85 (98)
153 cd04972 Ig_TrkABC_d4 Fourth do 98.2 1.8E-06 3.9E-11 55.4 4.6 37 13-49 4-40 (90)
154 cd05755 Ig2_ICAM-1_like Second 98.2 1.8E-05 3.8E-10 51.7 9.1 81 59-142 5-88 (100)
155 cd05775 Ig_SLAM-CD84_like_N N- 98.2 6.3E-06 1.4E-10 53.7 7.0 83 68-150 2-96 (97)
156 cd05849 Ig1_Contactin-1 First 98.2 2.4E-06 5.2E-11 55.2 4.8 41 9-49 1-44 (93)
157 cd00099 IgV Immunoglobulin var 98.2 7.8E-06 1.7E-10 53.7 7.4 73 66-140 2-91 (105)
158 cd05869 Ig5_NCAM-1 Fifth immun 98.2 3.2E-06 7E-11 55.0 5.5 42 8-49 1-42 (97)
159 cd05728 Ig4_Contactin-2-like F 98.2 1.7E-06 3.6E-11 55.0 4.0 38 12-49 2-39 (85)
160 cd05711 Ig_FcalphaRI Immunoglo 98.2 1.5E-05 3.2E-10 51.6 8.5 75 56-137 2-76 (94)
161 PF07686 V-set: Immunoglobulin 98.2 9.5E-06 2.1E-10 53.7 7.9 92 59-150 5-114 (114)
162 PF08205 C2-set_2: CD80-like C 98.2 1.8E-05 3.8E-10 50.5 8.8 72 70-141 14-86 (89)
163 cd05737 Ig_Myomesin_like_C C-t 98.2 3.8E-06 8.2E-11 54.1 5.1 35 15-49 7-41 (92)
164 cd05870 Ig5_NCAM-2 Fifth immun 98.2 4E-06 8.6E-11 54.7 5.2 39 8-47 1-39 (98)
165 cd07705 Ig2_Necl-1 Second immu 98.2 4.9E-05 1.1E-09 48.0 10.1 68 73-141 2-71 (83)
166 cd05722 Ig1_Neogenin First imm 98.1 4.2E-06 9E-11 54.2 4.6 38 12-49 2-39 (95)
167 cd05732 Ig5_NCAM-1_like Fifth 98.1 4.4E-06 9.6E-11 54.1 4.7 40 8-48 1-40 (96)
168 cd05888 Ig1_Nectin-4_like Frst 98.1 4.1E-05 8.9E-10 50.1 9.2 36 115-150 63-99 (100)
169 cd04975 Ig4_SCFR_like Fourth i 98.1 6.8E-06 1.5E-10 54.0 5.5 34 17-50 11-45 (101)
170 cd05730 Ig3_NCAM-1_like Third 98.1 4.2E-06 9.2E-11 54.1 4.4 41 9-49 1-43 (95)
171 cd05758 Ig5_KIRREL3-like Fifth 98.1 7.5E-06 1.6E-10 53.3 5.5 41 8-49 1-42 (98)
172 cd00096 Ig Immunoglobulin doma 98.1 7.1E-05 1.5E-09 44.1 8.8 66 73-139 1-66 (74)
173 cd05846 Ig1_MRC-OX-2_like Firs 98.1 3.1E-05 6.8E-10 50.3 7.5 80 70-150 1-96 (97)
174 cd07706 IgV_TCR_delta Immunogl 98.1 3.8E-05 8.2E-10 51.6 8.0 77 60-138 4-94 (116)
175 cd05884 Ig2_Necl-3 Second immu 98.1 3.7E-05 7.9E-10 48.6 7.5 68 73-141 2-71 (83)
176 cd05894 Ig_C5_MyBP-C C5 immuno 98.0 8.6E-06 1.9E-10 51.8 4.5 33 17-49 3-35 (86)
177 cd05773 Ig8_hNephrin_like Eigh 98.0 7.9E-06 1.7E-10 54.4 4.5 44 6-49 1-48 (109)
178 cd05739 Ig3_RPTP_IIa_LAR_like 98.0 5.9E-06 1.3E-10 50.3 3.6 26 24-49 1-26 (69)
179 cd07700 IgV_CD8_beta Immunoglo 98.0 3.7E-05 7.9E-10 51.0 7.4 70 66-137 2-93 (107)
180 cd05886 Ig1_Nectin-1_like Firs 98.0 8.6E-05 1.9E-09 48.5 8.9 36 115-150 62-98 (99)
181 cd05716 Ig_pIgR Immunoglobulin 98.0 6.1E-05 1.3E-09 48.9 8.0 71 66-138 3-86 (98)
182 cd05740 Ig_CEACAM_D4 Fourth im 98.0 1.2E-05 2.5E-10 51.8 4.4 39 10-49 2-42 (91)
183 cd05745 Ig3_Peroxidasin Third 98.0 6.8E-06 1.5E-10 50.6 3.2 27 23-49 1-27 (74)
184 cd05891 Ig_M-protein_C C-termi 98.0 1.2E-05 2.6E-10 51.8 4.4 35 15-49 7-41 (92)
185 cd05902 Ig_Neurocan Immunoglob 98.0 9.5E-05 2.1E-09 49.3 8.8 38 114-151 70-107 (110)
186 cd05901 Ig_Versican Immunoglob 97.9 0.00022 4.8E-09 47.9 9.9 38 114-151 77-114 (117)
187 cd07698 IgC_MHC_I_alpha3 Class 97.9 0.00021 4.5E-09 46.1 9.4 78 55-139 2-83 (93)
188 cd05859 Ig4_PDGFR-alpha Fourth 97.9 2.9E-05 6.3E-10 51.0 5.3 33 18-50 12-44 (101)
189 PHA02987 Ig domain OX-2-like p 97.9 0.00017 3.8E-09 51.8 9.5 90 63-153 23-124 (189)
190 cd05724 Ig2_Robo Second immuno 97.9 1.9E-05 4E-10 49.9 4.2 35 15-49 2-37 (86)
191 cd05865 Ig1_NCAM-1 First immun 97.9 3E-05 6.6E-10 50.4 4.9 37 12-48 3-40 (96)
192 cd05857 Ig2_FGFR Second immuno 97.9 1.8E-05 3.9E-10 49.9 3.7 32 19-50 4-35 (85)
193 cd05720 Ig_CD8_alpha Immunoglo 97.9 0.0001 2.2E-09 48.6 7.3 67 67-137 3-90 (104)
194 cd05868 Ig4_NrCAM Fourth immun 97.9 1.9E-05 4.2E-10 48.9 3.6 26 24-49 1-26 (76)
195 cd05866 Ig1_NCAM-2 First immun 97.9 4.4E-05 9.6E-10 49.2 5.4 37 12-49 3-39 (92)
196 cd05772 IgC_SIRP Signal-regula 97.8 0.00033 7.2E-09 46.7 9.6 72 67-139 18-92 (111)
197 cd05867 Ig4_L1-CAM_like Fourth 97.8 2.1E-05 4.6E-10 48.6 3.5 26 24-49 1-26 (76)
198 cd05712 Ig_Siglec_N Immunoglob 97.8 0.00017 3.6E-09 48.7 8.2 76 61-138 5-102 (119)
199 cd04967 Ig1_Contactin First Ig 97.8 4.3E-05 9.3E-10 49.0 5.0 40 10-49 2-44 (91)
200 cd07696 IgC_CH3 CH3 domain (th 97.8 0.00013 2.9E-09 47.3 7.3 73 67-139 11-86 (96)
201 cd07699 IgC_L Immunoglobulin C 97.8 7.2E-05 1.6E-09 49.0 6.0 72 67-139 14-89 (100)
202 cd05887 Ig1_Nectin-3_like Firs 97.8 0.00019 4E-09 46.6 7.7 37 115-151 59-96 (96)
203 cd04973 Ig1_FGFR First immunog 97.7 4.7E-05 1E-09 47.5 4.0 33 16-49 1-33 (79)
204 cd05882 Ig1_Necl-1 First (N-te 97.7 6.8E-05 1.5E-09 48.6 4.8 35 16-50 4-38 (95)
205 PF13895 Ig_2: Immunoglobulin 97.7 0.00013 2.8E-09 45.0 5.8 66 9-81 1-66 (80)
206 cd05852 Ig5_Contactin-1 Fifth 97.7 4.1E-05 8.9E-10 47.1 3.2 26 24-49 1-26 (73)
207 cd05847 IgC_CH2_IgE CH2 domain 97.7 0.00032 6.9E-09 45.4 7.4 71 69-140 13-87 (94)
208 cd04981 IgV_H Immunoglobulin ( 97.7 0.00033 7.2E-09 47.2 7.6 74 62-137 4-97 (117)
209 smart00407 IGc1 Immunoglobulin 97.7 0.0007 1.5E-08 41.7 8.5 65 73-138 2-70 (75)
210 cd04978 Ig4_L1-NrCAM_like Four 97.7 5.1E-05 1.1E-09 46.7 3.3 27 24-50 1-27 (76)
211 cd05723 Ig4_Neogenin Fourth im 97.7 0.00025 5.3E-09 43.2 6.2 24 26-49 1-24 (71)
212 cd05755 Ig2_ICAM-1_like Second 97.6 0.00042 9E-09 45.3 7.4 41 10-50 2-45 (100)
213 cd05743 Ig_Perlecan_D2_like Im 97.6 6.8E-05 1.5E-09 46.6 3.6 26 24-49 1-26 (78)
214 cd05768 IgC_CH4 CH4 domain (fo 97.6 0.00028 6.2E-09 46.3 6.6 71 68-139 14-91 (102)
215 cd05863 Ig2_VEGFR-3 Second imm 97.6 6.2E-05 1.4E-09 45.5 2.8 24 27-50 1-24 (67)
216 cd05856 Ig2_FGFRL1-like Second 97.6 8.1E-05 1.8E-09 46.4 3.5 32 19-50 4-35 (82)
217 cd05873 Ig_Sema4D_like Immunog 97.6 0.00012 2.7E-09 46.5 4.2 35 15-50 2-36 (87)
218 PF07654 C1-set: Immunoglobuli 97.6 0.002 4.2E-08 40.5 9.8 68 69-140 7-78 (83)
219 cd05719 Ig2_PVR_like Second im 97.6 0.0011 2.3E-08 43.0 8.5 67 72-141 17-84 (95)
220 cd04977 Ig1_NCAM-1_like First 97.6 0.00021 4.5E-09 46.0 5.2 37 12-49 3-39 (92)
221 cd07701 Ig1_Necl-3 First (N-te 97.6 0.00017 3.7E-09 46.7 4.8 33 16-48 4-36 (95)
222 cd04969 Ig5_Contactin_like Fif 97.5 0.00011 2.4E-09 45.0 3.5 26 24-49 1-26 (73)
223 cd04979 Ig_Semaphorin_C Immuno 97.5 0.00015 3.3E-09 46.2 4.0 33 16-49 3-35 (89)
224 cd05892 Ig_Myotilin_C C-termin 97.5 9.6E-05 2.1E-09 45.7 2.9 23 27-49 1-23 (75)
225 cd05893 Ig_Palladin_C C-termin 97.5 9.9E-05 2.2E-09 45.6 2.8 24 27-50 1-24 (75)
226 cd04985 IgC_CH1 CH1 domain (fi 97.5 0.0015 3.2E-08 42.3 8.3 68 69-138 15-86 (95)
227 cd05764 Ig_2 Subgroup of the i 97.5 0.001 2.3E-08 40.6 7.3 27 24-50 1-27 (74)
228 cd05889 Ig1_DNAM-1_like First 97.5 0.0012 2.7E-08 42.8 7.9 34 115-148 59-93 (96)
229 cd04974 Ig3_FGFR Third immunog 97.5 0.00015 3.2E-09 46.4 3.5 24 24-47 1-24 (90)
230 cd05767 IgC_MHC_II_alpha Class 97.5 0.0027 5.9E-08 41.0 9.3 66 69-138 14-83 (94)
231 cd05875 Ig6_hNeurofascin_like 97.4 0.00057 1.2E-08 42.4 5.9 23 27-49 1-23 (77)
232 cd05771 IgC_Tapasin_R Tapasin- 97.4 0.00021 4.6E-09 49.6 4.1 39 117-155 2-40 (139)
233 cd07703 Ig2_Nectin-2_like Seco 97.4 0.0019 4.1E-08 41.8 8.1 69 72-143 17-86 (95)
234 cd05874 Ig6_NrCAM Sixth immuno 97.4 0.00013 2.8E-09 45.3 2.5 24 27-50 1-24 (77)
235 cd07697 IgC_TCR_gamma T cell r 97.4 0.0013 2.8E-08 42.7 7.1 68 68-138 14-84 (96)
236 cd05770 IgC_beta2m Class I maj 97.4 0.0025 5.5E-08 41.0 8.4 67 68-138 13-82 (93)
237 cd05754 Ig3_Perlecan_like Thir 97.4 0.00044 9.4E-09 43.6 4.8 36 14-49 6-42 (85)
238 cd05726 Ig4_Robo Fhird immunog 97.4 0.00021 4.6E-09 45.6 3.4 26 24-49 1-26 (90)
239 cd05760 Ig2_PTK7 Second immuno 97.4 0.00016 3.5E-09 44.8 2.7 23 27-49 1-23 (77)
240 cd05753 Ig2_FcgammaR_like Seco 97.4 0.00041 8.9E-09 43.7 4.6 35 15-49 5-40 (83)
241 cd05898 Ig5_KIRREL3 Fifth immu 97.4 0.00062 1.3E-08 44.3 5.4 40 8-48 1-41 (98)
242 cd07698 IgC_MHC_I_alpha3 Class 97.3 0.0026 5.7E-08 40.9 8.3 71 8-82 1-82 (93)
243 cd05733 Ig6_L1-CAM_like Sixth 97.3 0.00017 3.8E-09 44.6 2.5 24 27-50 1-24 (77)
244 cd05769 IgC_TCR_beta T cell re 97.3 0.0016 3.5E-08 43.7 7.3 78 67-145 15-98 (115)
245 cd05744 Ig_Myotilin_C_like Imm 97.3 0.00021 4.6E-09 44.0 2.8 23 27-49 1-23 (75)
246 cd05756 Ig1_IL1R_like First im 97.3 0.00027 5.9E-09 45.7 3.4 33 17-49 7-44 (94)
247 cd05766 IgC_MHC_II_beta Class 97.3 0.0091 2E-07 38.5 10.3 68 68-139 12-83 (94)
248 cd05735 Ig8_DSCAM Eight immuno 97.3 0.00037 8E-09 44.4 3.7 26 24-49 1-26 (88)
249 PF08205 C2-set_2: CD80-like C 97.3 0.0018 3.8E-08 41.1 6.8 40 10-50 1-41 (89)
250 cd05858 Ig3_FGFR-2 Third immun 97.3 0.00037 8E-09 44.5 3.5 23 24-46 1-23 (90)
251 PF13927 Ig_3: Immunoglobulin 97.2 0.0017 3.7E-08 39.2 6.2 35 9-44 1-36 (75)
252 cd05748 Ig_Titin_like Immunogl 97.2 0.0004 8.7E-09 42.5 3.3 24 26-49 1-24 (74)
253 cd05864 Ig2_VEGFR-2 Second imm 97.2 0.00033 7.1E-09 42.7 2.7 24 27-50 1-24 (70)
254 cd04986 IgC_CH2 CH2 domain (se 97.2 0.0017 3.7E-08 42.3 6.2 72 67-140 16-90 (99)
255 cd05738 Ig2_RPTP_IIa_LAR_like 97.2 0.00033 7.2E-09 43.0 2.8 23 27-49 1-23 (74)
256 cd05876 Ig3_L1-CAM Third immun 97.2 0.00029 6.3E-09 42.9 2.5 23 27-49 1-23 (71)
257 PHA03376 BARF1; Provisional 97.2 0.0034 7.3E-08 45.4 8.0 72 64-139 20-110 (221)
258 cd05729 Ig2_FGFR_like Second i 97.2 0.0007 1.5E-08 42.3 4.2 31 19-49 4-34 (85)
259 smart00406 IGv Immunoglobulin 97.2 0.0016 3.4E-08 40.2 5.8 20 115-134 61-80 (81)
260 cd05765 Ig_3 Subgroup of the i 97.2 0.00042 9.1E-09 43.1 3.1 24 24-47 1-24 (81)
261 cd04976 Ig2_VEGFR Second immun 97.2 0.00037 7.9E-09 42.5 2.8 23 27-49 1-23 (71)
262 cd05746 Ig4_Peroxidasin Fourth 97.2 0.0003 6.6E-09 42.5 2.3 23 27-49 1-23 (69)
263 cd07702 Ig2_VEGFR-1 Second imm 97.1 0.00042 9.2E-09 42.4 2.5 23 27-49 1-23 (72)
264 smart00408 IGc2 Immunoglobulin 97.1 0.00079 1.7E-08 38.9 3.3 27 23-49 1-27 (63)
265 KOG3515|consensus 97.0 0.0015 3.2E-08 56.6 6.1 144 6-155 296-497 (741)
266 cd05731 Ig3_L1-CAM_like Third 97.0 0.00059 1.3E-08 41.2 2.7 23 27-49 1-23 (71)
267 PHA02633 hypothetical protein; 97.0 0.0022 4.7E-08 37.5 4.8 39 116-154 18-56 (63)
268 cd05845 Ig2_L1-CAM_like Second 97.0 0.0011 2.5E-08 42.8 4.0 32 16-47 10-42 (95)
269 cd05772 IgC_SIRP Signal-regula 97.0 0.0012 2.6E-08 44.0 4.1 45 6-50 2-49 (111)
270 cd07690 Ig1_CD4 First immunogl 97.0 0.0018 3.8E-08 41.9 4.6 31 19-49 2-32 (94)
271 cd05899 IgV_TCR_beta Immunoglo 97.0 0.0015 3.1E-08 43.4 4.4 34 13-47 2-35 (110)
272 cd05763 Ig_1 Subgroup of the i 97.0 0.00065 1.4E-08 41.7 2.5 23 27-49 1-23 (75)
273 cd05717 Ig1_Necl-1-3_like Firs 97.0 0.0018 3.9E-08 41.7 4.7 32 17-48 5-36 (95)
274 cd05767 IgC_MHC_II_alpha Class 96.9 0.015 3.2E-07 37.5 8.8 41 9-50 1-43 (94)
275 PHA03376 BARF1; Provisional 96.9 0.015 3.3E-07 42.1 9.4 29 18-46 20-51 (221)
276 cd05725 Ig3_Robo Third immunog 96.9 0.00069 1.5E-08 40.9 2.4 23 27-49 1-23 (69)
277 cd05855 Ig_TrkB_d5 Fifth domai 96.9 0.00092 2E-08 41.7 2.7 22 29-50 3-24 (79)
278 cd05885 Ig2_Necl-4 Second immu 96.9 0.0013 2.8E-08 41.1 3.1 25 26-50 1-26 (80)
279 cd04983 IgV_TCR_alpha_like Imm 96.8 0.0022 4.7E-08 42.3 4.4 35 13-47 2-36 (109)
280 cd05750 Ig_Pro_neuregulin Immu 96.8 0.0012 2.6E-08 40.3 2.5 24 27-50 1-25 (75)
281 cd05766 IgC_MHC_II_beta Class 96.8 0.019 4.1E-07 37.0 8.2 29 22-50 12-42 (94)
282 cd05721 IgV_CTLA-4 Immunoglobu 96.7 0.041 9E-07 36.7 9.7 22 115-136 73-94 (115)
283 cd05854 Ig6_Contactin-2 Sixth 96.7 0.0024 5.2E-08 40.3 3.8 26 25-50 1-28 (85)
284 cd07699 IgC_L Immunoglobulin C 96.7 0.0024 5.2E-08 41.7 3.8 42 9-50 1-45 (100)
285 PF00047 ig: Immunoglobulin do 96.7 0.0028 6E-08 37.3 3.8 26 24-49 1-27 (64)
286 cd05736 Ig2_Follistatin_like S 96.7 0.0015 3.2E-08 40.1 2.6 24 27-50 1-24 (76)
287 cd04971 Ig_TrKABC_d5 Fifth dom 96.7 0.0017 3.6E-08 40.7 2.8 23 28-50 2-24 (81)
288 cd05727 Ig2_Contactin-2-like S 96.7 0.0025 5.4E-08 41.3 3.5 33 17-49 11-44 (96)
289 cd05734 Ig7_DSCAM Seventh immu 96.7 0.0015 3.2E-08 40.5 2.4 22 27-48 1-22 (79)
290 cd07704 Ig2_Nectin-3-4_like Se 96.6 0.028 6E-07 36.5 8.2 74 64-140 10-85 (97)
291 cd04970 Ig6_Contactin_like Six 96.6 0.0033 7.2E-08 39.5 3.9 26 25-50 1-28 (85)
292 cd05759 Ig2_KIRREL3-like Secon 96.6 0.0031 6.7E-08 39.4 3.6 24 26-49 1-25 (82)
293 cd05751 Ig1_LILRB1_like First 96.6 0.0053 1.1E-07 39.3 4.5 39 9-49 2-40 (91)
294 cd05742 Ig1_VEGFR_like First i 96.5 0.003 6.4E-08 39.7 3.1 26 24-49 1-28 (84)
295 cd04982 IgV_TCR_gamma Immunogl 96.5 0.0041 8.9E-08 41.6 3.9 34 14-47 3-38 (116)
296 cd07691 Ig_CD3_gamma_delta Imm 96.5 0.014 3E-07 35.0 5.4 60 70-150 6-65 (69)
297 cd05711 Ig_FcalphaRI Immunoglo 96.4 0.0073 1.6E-07 38.9 4.6 39 9-49 1-39 (94)
298 cd07692 Ig_CD3_epsilon Immunog 96.4 0.024 5.2E-07 33.7 6.3 52 68-138 5-56 (65)
299 cd07689 Ig2_VCAM-1 Second immu 96.4 0.02 4.4E-07 37.1 6.4 71 67-139 12-86 (99)
300 cd05883 Ig2_Necl-2 Second immu 96.4 0.0052 1.1E-07 38.6 3.4 26 26-51 1-27 (82)
301 cd05881 Ig1_Necl-2 First (N-te 96.3 0.0097 2.1E-07 38.5 4.7 33 17-49 5-37 (95)
302 cd05861 Ig1_PDGFR-alphabeta Fr 96.3 0.0061 1.3E-07 38.3 3.7 25 24-48 1-25 (84)
303 cd05871 Ig_Semaphorin_classIII 96.2 0.0082 1.8E-07 38.4 3.9 28 18-46 5-32 (91)
304 cd05769 IgC_TCR_beta T cell re 96.2 0.0085 1.8E-07 40.2 4.0 42 9-50 2-46 (115)
305 smart00409 IG Immunoglobulin. 96.2 0.013 2.8E-07 35.7 4.6 30 17-46 2-31 (86)
306 smart00410 IG_like Immunoglobu 96.2 0.013 2.8E-07 35.7 4.6 30 17-46 2-31 (86)
307 cd00098 IgC Immunoglobulin Con 96.2 0.0069 1.5E-07 38.7 3.4 29 22-50 11-41 (95)
308 KOG1480|consensus 96.1 0.0025 5.5E-08 54.8 1.5 136 9-152 24-222 (909)
309 cd05761 Ig2_Necl-1-4_like Seco 96.1 0.0086 1.9E-07 37.5 3.5 25 26-50 1-26 (82)
310 cd07696 IgC_CH3 CH3 domain (th 96.0 0.01 2.2E-07 38.5 3.7 36 14-49 4-42 (96)
311 cd05770 IgC_beta2m Class I maj 96.0 0.018 3.9E-07 37.1 4.8 41 9-50 1-43 (93)
312 cd07706 IgV_TCR_delta Immunogl 96.0 0.016 3.4E-07 38.7 4.7 35 12-46 2-37 (116)
313 cd05768 IgC_CH4 CH4 domain (fo 95.9 0.015 3.2E-07 38.2 4.0 31 19-49 11-43 (102)
314 cd05884 Ig2_Necl-3 Second immu 95.9 0.012 2.5E-07 37.0 3.3 24 27-50 2-26 (83)
315 cd05895 Ig_Pro_neuregulin-1 Im 95.8 0.0083 1.8E-07 36.8 2.4 23 27-49 1-24 (76)
316 cd05853 Ig6_Contactin-4 Sixth 95.8 0.014 3.1E-07 36.9 3.5 26 25-50 1-28 (85)
317 cd05872 Ig_Sema4B_like Immunog 95.7 0.015 3.3E-07 36.7 3.4 32 17-49 4-35 (85)
318 smart00407 IGc1 Immunoglobulin 95.7 0.13 2.8E-06 31.5 7.5 24 26-49 1-26 (75)
319 cd05757 Ig2_IL1R_like Second i 95.6 0.01 2.2E-07 38.1 2.5 32 18-49 4-40 (92)
320 cd07705 Ig2_Necl-1 Second immu 95.6 0.016 3.5E-07 36.4 3.3 24 27-50 2-26 (83)
321 PHA03270 envelope glycoprotein 95.6 0.16 3.6E-06 41.3 9.5 43 6-50 218-263 (466)
322 PF07686 V-set: Immunoglobulin 95.5 0.045 9.7E-07 35.7 5.3 37 11-47 3-40 (114)
323 cd04985 IgC_CH1 CH1 domain (fi 95.5 0.045 9.7E-07 35.4 5.0 40 10-49 2-43 (95)
324 PF08204 V-set_CD47: CD47 immu 95.4 0.023 5E-07 38.8 3.6 82 69-151 26-120 (130)
325 cd05860 Ig4_SCFR Fourth immuno 95.4 0.035 7.6E-07 36.2 4.3 33 17-49 11-44 (101)
326 cd00099 IgV Immunoglobulin var 95.3 0.027 5.9E-07 36.6 3.8 28 20-47 2-30 (105)
327 cd05847 IgC_CH2_IgE CH2 domain 95.3 0.032 6.9E-07 36.0 3.9 35 15-49 5-41 (94)
328 PF07354 Sp38: Zona-pellucida- 95.3 0.035 7.6E-07 42.2 4.5 50 83-139 11-60 (271)
329 cd04984 IgV_L_lambda Immunoglo 95.2 0.027 6E-07 36.3 3.4 28 20-47 2-31 (98)
330 KOG4597|consensus 95.1 0.03 6.4E-07 46.0 3.9 87 62-151 203-292 (560)
331 PHA03269 envelope glycoprotein 95.0 0.3 6.5E-06 40.5 9.4 44 5-50 325-371 (566)
332 cd07700 IgV_CD8_beta Immunoglo 94.8 0.05 1.1E-06 35.8 3.9 28 20-47 2-30 (107)
333 cd04981 IgV_H Immunoglobulin ( 94.7 0.062 1.4E-06 36.0 4.3 32 15-46 3-36 (117)
334 cd05774 Ig_CEACAM_D1 First imm 94.6 0.043 9.4E-07 36.1 3.2 34 14-47 3-36 (105)
335 cd05720 Ig_CD8_alpha Immunoglo 94.6 0.048 1E-06 35.7 3.3 28 20-47 2-29 (104)
336 cd04986 IgC_CH2 CH2 domain (se 94.6 0.066 1.4E-06 34.9 3.9 41 9-49 3-47 (99)
337 cd07689 Ig2_VCAM-1 Second immu 94.4 0.069 1.5E-06 34.6 3.7 38 9-49 3-43 (99)
338 PHA03042 CD47-like protein; Pr 94.2 0.37 8.1E-06 36.9 7.7 72 68-151 29-105 (286)
339 cd05715 Ig_P0-like Immunoglobu 94.1 0.13 2.7E-06 34.4 4.7 32 15-46 4-39 (116)
340 cd07697 IgC_TCR_gamma T cell r 94.0 0.1 2.2E-06 33.8 3.8 32 19-50 11-44 (96)
341 PHA03271 envelope glycoprotein 93.8 2.1 4.5E-05 35.0 11.4 74 67-140 257-336 (490)
342 PHA03273 envelope glycoprotein 93.5 1.3 2.7E-05 36.7 9.9 42 7-50 235-279 (486)
343 cd05880 Ig_EVA1 Immunoglobulin 93.4 0.2 4.4E-06 33.4 4.7 31 15-45 4-38 (115)
344 cd05712 Ig_Siglec_N Immunoglob 93.4 0.16 3.6E-06 34.0 4.3 33 15-47 5-43 (119)
345 PHA02982 hypothetical protein; 93.3 0.46 9.9E-06 35.1 6.6 77 65-141 34-125 (251)
346 cd07704 Ig2_Nectin-3-4_like Se 93.3 0.16 3.4E-06 33.0 3.8 29 18-46 10-40 (97)
347 PF07654 C1-set: Immunoglobuli 93.3 0.15 3.2E-06 31.8 3.7 28 23-50 7-36 (83)
348 cd04980 IgV_L_kappa Immunoglob 93.1 0.23 5E-06 32.4 4.6 77 58-138 3-93 (106)
349 PHA03271 envelope glycoprotein 92.9 1.3 2.7E-05 36.2 9.0 42 7-50 245-289 (490)
350 PHA02987 Ig domain OX-2-like p 92.8 0.22 4.8E-06 36.1 4.3 35 17-51 23-58 (189)
351 cd05741 Ig_CEACAM_D1_like Firs 92.5 0.13 2.7E-06 32.5 2.6 25 24-48 1-25 (92)
352 cd05716 Ig_pIgR Immunoglobulin 92.3 0.19 4.1E-06 32.3 3.3 29 19-47 2-31 (98)
353 PHA03189 UL14 tegument protein 92.2 2.4 5.1E-05 33.2 9.3 26 14-39 57-82 (348)
354 cd05890 Ig2_Nectin-1_like Seco 92.0 0.89 1.9E-05 29.2 5.8 74 73-149 23-97 (98)
355 PHA03270 envelope glycoprotein 91.9 3.6 7.9E-05 33.8 10.5 100 38-139 194-308 (466)
356 cd05897 Ig2_IL1R2_like Second 91.8 0.12 2.7E-06 33.3 1.9 31 19-49 5-40 (95)
357 PHA03273 envelope glycoprotein 91.8 3.4 7.3E-05 34.3 10.3 111 27-139 198-325 (486)
358 cd05896 Ig1_IL1RAPL-1_like Fir 91.7 0.24 5.3E-06 32.5 3.2 33 17-49 8-51 (104)
359 cd07694 Ig2_CD4 Second immunog 91.3 0.48 1E-05 30.0 4.1 32 18-49 8-41 (88)
360 PHA03269 envelope glycoprotein 91.0 2.4 5.3E-05 35.4 8.8 86 52-139 326-417 (566)
361 PF02124 Marek_A: Marek's dise 91.0 4.6 0.0001 30.1 9.5 47 40-93 58-114 (211)
362 cd05775 Ig_SLAM-CD84_like_N N- 90.6 0.25 5.4E-06 31.9 2.4 26 22-47 2-28 (97)
363 PF05790 C2-set: Immunoglobuli 90.5 2.9 6.2E-05 26.0 8.0 34 117-150 44-78 (80)
364 cd05862 Ig1_VEGFR First immuno 90.4 0.44 9.6E-06 29.9 3.5 26 24-49 1-28 (86)
365 PHA03052 Hypothetical protein; 90.1 0.87 1.9E-05 27.2 4.1 34 16-49 4-40 (69)
366 cd05879 Ig_P0 Immunoglobulin ( 89.9 3.4 7.3E-05 27.6 7.6 31 15-45 4-38 (116)
367 cd05714 Ig_CSPGs_LP Immunoglob 89.7 0.53 1.1E-05 30.6 3.5 24 23-46 1-30 (106)
368 cd05719 Ig2_PVR_like Second im 89.6 0.48 1E-05 30.5 3.2 22 25-46 16-38 (95)
369 cd05877 Ig_LP_like Immunoglobu 89.6 0.55 1.2E-05 30.5 3.6 25 23-47 1-31 (106)
370 cd05900 Ig_Aggrecan Immunoglob 89.6 0.53 1.2E-05 31.3 3.5 24 23-46 1-36 (112)
371 KOG1026|consensus 89.3 0.9 1.9E-05 40.1 5.4 127 18-155 201-367 (774)
372 cd05878 Ig_Aggrecan_like Immun 87.8 0.86 1.9E-05 30.1 3.5 24 23-46 1-34 (110)
373 cd00096 Ig Immunoglobulin doma 87.6 0.7 1.5E-05 26.1 2.8 23 27-49 1-23 (74)
374 PF11465 Receptor_2B4: Natural 87.3 1.6 3.6E-05 28.6 4.4 35 116-150 71-106 (108)
375 cd07692 Ig_CD3_epsilon Immunog 86.7 0.52 1.1E-05 28.1 1.7 24 22-48 5-28 (65)
376 cd05713 Ig_MOG_like Immunoglob 86.7 0.98 2.1E-05 28.9 3.3 24 24-47 1-27 (100)
377 PHA02865 MHC-like TNF binding 86.4 4.9 0.00011 32.2 7.5 21 72-92 216-238 (338)
378 cd05846 Ig1_MRC-OX-2_like Firs 85.9 1.2 2.6E-05 28.5 3.4 24 24-47 1-25 (97)
379 cd05718 Ig1_PVR_like First imm 84.0 1.3 2.9E-05 28.1 3.0 24 25-48 1-27 (98)
380 cd07703 Ig2_Nectin-2_like Seco 83.6 1.6 3.5E-05 28.1 3.1 28 19-46 8-38 (95)
381 PF06328 Lep_receptor_Ig: Ig-l 82.0 4.5 9.8E-05 25.7 4.7 36 13-48 7-47 (89)
382 smart00406 IGv Immunoglobulin 79.2 3 6.5E-05 25.0 3.2 22 26-47 1-24 (81)
383 PHA02914 Immunoglobulin-like d 76.9 15 0.00031 30.2 7.0 28 115-142 345-372 (500)
384 PF06832 BiPBP_C: Penicillin-B 76.6 10 0.00022 23.8 5.1 44 6-50 7-54 (89)
385 PHA02865 MHC-like TNF binding 75.0 5.4 0.00012 31.9 4.2 36 7-46 201-238 (338)
386 cd05902 Ig_Neurocan Immunoglob 73.4 5.4 0.00012 26.4 3.3 24 23-46 1-31 (110)
387 PHA02914 Immunoglobulin-like d 73.3 45 0.00097 27.6 8.8 37 117-153 82-119 (500)
388 KOG0613|consensus 72.9 2.3 5E-05 39.5 1.9 75 67-144 346-421 (1205)
389 cd05888 Ig1_Nectin-4_like Frst 71.0 5.6 0.00012 25.6 3.0 22 25-46 1-25 (100)
390 KOG1761|consensus 69.4 4 8.6E-05 27.1 1.9 56 129-185 53-108 (116)
391 PHA03240 envelope glycoprotein 68.0 4.5 9.8E-05 30.0 2.2 29 114-142 103-131 (258)
392 TIGR00864 PCC polycystin catio 67.9 1.6E+02 0.0036 30.8 13.1 45 5-49 1862-1907(2740)
393 PHA03112 IL-18 binding protein 67.5 11 0.00025 26.1 3.9 78 68-145 36-125 (141)
394 cd05901 Ig_Versican Immunoglob 64.2 12 0.00026 25.1 3.5 23 23-45 1-34 (117)
395 PF06328 Lep_receptor_Ig: Ig-l 63.6 35 0.00076 21.6 8.0 65 63-134 11-80 (89)
396 PF11049 KSHV_K1: Glycoprotein 62.7 30 0.00065 20.6 4.5 54 28-91 2-57 (71)
397 PTZ00074 60S ribosomal protein 59.9 9.9 0.00021 26.2 2.5 12 158-169 94-105 (135)
398 KOG0613|consensus 59.9 20 0.00044 33.7 5.1 104 27-149 208-311 (1205)
399 PF02124 Marek_A: Marek's dise 58.9 52 0.0011 24.6 6.3 46 39-84 106-162 (211)
400 KOG2812|consensus 57.7 6.1 0.00013 31.7 1.4 7 164-170 241-247 (426)
401 KOG3113|consensus 56.0 12 0.00027 28.6 2.7 29 156-184 166-194 (293)
402 PF15086 UPF0542: Uncharacteri 54.5 15 0.00031 22.3 2.3 14 162-175 45-58 (74)
403 KOG3794|consensus 54.3 8.8 0.00019 31.2 1.8 18 64-81 117-134 (453)
404 PHA03112 IL-18 binding protein 53.6 19 0.00042 25.0 3.1 27 21-47 35-63 (141)
405 PHA03283 envelope glycoprotein 53.5 41 0.0009 28.7 5.5 37 116-152 134-170 (542)
406 cd05721 IgV_CTLA-4 Immunoglobu 48.7 37 0.00079 22.8 3.8 30 63-92 6-38 (115)
407 PF00801 PKD: PKD domain; Int 46.2 18 0.00038 21.3 1.9 29 19-47 6-34 (69)
408 PF09085 Adhes-Ig_like: Adhesi 41.6 66 0.0014 20.8 3.9 41 8-50 2-47 (110)
409 PTZ00074 60S ribosomal protein 41.0 24 0.00051 24.4 2.0 7 128-134 76-82 (135)
410 PHA03282 envelope glycoprotein 40.4 66 0.0014 27.2 4.7 38 115-152 123-162 (540)
411 KOG2812|consensus 39.9 22 0.00048 28.6 2.0 14 172-185 254-267 (426)
412 PHA03240 envelope glycoprotein 31.2 99 0.0021 23.2 4.0 28 18-45 32-59 (258)
413 KOG1059|consensus 29.5 27 0.00058 31.1 1.0 8 163-170 837-844 (877)
414 PF06832 BiPBP_C: Penicillin-B 26.3 1.7E+02 0.0036 18.1 9.7 55 73-144 32-86 (89)
415 PF03174 CHB_HEX_C: Chitobiase 24.9 1.2E+02 0.0026 18.1 3.2 32 14-48 5-36 (75)
416 TIGR00864 PCC polycystin catio 24.9 8.9E+02 0.019 26.1 12.3 30 65-94 1877-1906(2740)
417 KOG4727|consensus 24.5 74 0.0016 22.9 2.3 15 125-139 70-84 (193)
418 KOG4055|consensus 23.0 81 0.0018 23.0 2.3 9 169-177 123-131 (213)
419 PF10147 CR6_interact: Growth 23.0 1.1E+02 0.0023 23.1 3.0 27 159-185 178-204 (217)
420 PF01688 Herpes_gI: Alphaherpe 21.1 2.2E+02 0.0049 20.3 4.2 24 115-138 123-146 (161)
421 KOG2002|consensus 21.1 22 0.00048 32.5 -0.9 6 171-176 918-923 (1018)
422 PF12988 DUF3872: Domain of un 21.1 3E+02 0.0064 19.1 8.7 81 11-91 34-120 (137)
423 PHA03286 envelope glycoprotein 21.1 2.2E+02 0.0048 24.0 4.7 37 115-151 126-163 (492)
424 PF05955 Herpes_gp2: Equine he 20.4 3.5E+02 0.0077 19.8 10.5 56 83-139 121-179 (226)
No 1
>KOG3513|consensus
Probab=99.75 E-value=1.5e-17 Score=143.56 Aligned_cols=144 Identities=28% Similarity=0.469 Sum_probs=117.2
Q ss_pred cccccCCeEEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCceEE--------------------------------
Q psy16426 4 QGQNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEII-------------------------------- 51 (194)
Q Consensus 4 ~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~l~-------------------------------- 51 (194)
+-++++|.++..+++..+..|++++|.|.+.|.|.|.|.|++|+..+.
T Consensus 326 v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A 405 (1051)
T KOG3513|consen 326 VTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIA 405 (1051)
T ss_pred EEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeee
Confidence 447899999999999999999999999999999999999999885543
Q ss_pred --------------Ee-eCCeEEeccc--eeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeE
Q psy16426 52 --------------AQ-VPPMIWIQNQ--LVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114 (194)
Q Consensus 52 --------------v~-~~p~i~~~~~--~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (194)
|. .+|.+...+. ...+..|.++.|.|.+.+.|.|.+.|.+ ++....++.++. ..++
T Consensus 406 ~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k-~~~~~~~~~r~~--i~ed---- 478 (1051)
T KOG3513|consen 406 ENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLK-GGEKLLQSGRIR--ILED---- 478 (1051)
T ss_pred ecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEc-CCcccccCceEE--ECCC----
Confidence 22 2355544432 3456789999999999999999999999 444555665654 2232
Q ss_pred EEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEcccCCC
Q psy16426 115 HMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKK 155 (194)
Q Consensus 115 ~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v~~~p~ 155 (194)
++|.|.+++.+|.|.|+|.|.|.+|....+..|.|.+++-
T Consensus 479 -GtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tr 518 (1051)
T KOG3513|consen 479 -GTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATR 518 (1051)
T ss_pred -CcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCce
Confidence 3999999999999999999999999999999998876543
No 2
>KOG3513|consensus
Probab=99.74 E-value=2.4e-17 Score=142.20 Aligned_cols=139 Identities=26% Similarity=0.421 Sum_probs=112.8
Q ss_pred cCCeEEE-cCCeeeeeCCCcEEEEeeeeccCCceeEEEecCceEE-----------------------------------
Q psy16426 8 VPPMIWI-QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEII----------------------------------- 51 (194)
Q Consensus 8 ~~P~~~~-~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~l~----------------------------------- 51 (194)
++|.|.. .+++.....|+.|.|.|.+.|+|.|+|.|+|.++..+
T Consensus 239 ~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G 318 (1051)
T KOG3513|consen 239 YAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRG 318 (1051)
T ss_pred cCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccc
Confidence 4455444 4456778889999999999999999999999988432
Q ss_pred ---------EeeCCeEEeccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCce-eEEecCCceeEEEEEEEe
Q psy16426 52 ---------AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKY-EPILLDNAYKIHMKLTIK 121 (194)
Q Consensus 52 ---------v~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~ 121 (194)
|+.+|.+....+...+..|+++.+.|.+.|.|.|.+.|+. ++..+....+. ..... ...|.|.
T Consensus 319 ~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~Wlk-Ng~pl~~~~r~~~~~i~------~g~L~is 391 (1051)
T KOG3513|consen 319 SATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLK-NGEPLEPAERDPRYKID------DGTLIIS 391 (1051)
T ss_pred cceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEee-CCeecCccCCCcceEEe------CCEEEEE
Confidence 6778888878888888999999999999999999999999 55544433331 11122 2499999
Q ss_pred ecCCCCCeEEEEEEEcCCCceEEEEEEEcccC
Q psy16426 122 AVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKK 153 (194)
Q Consensus 122 ~~~~~d~g~y~C~a~n~~g~~~~~~~l~v~~~ 153 (194)
+++..|+|.|.|.|.|.+|...+...|.|...
T Consensus 392 ~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~ 423 (1051)
T KOG3513|consen 392 NVQESDSGVYQCIAENKYGTIYANAELKVLAS 423 (1051)
T ss_pred ecccccCeEEEeeeecccceEeeeeEEEEEcc
Confidence 99999999999999999999999999998776
No 3
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.73 E-value=1.6e-16 Score=104.21 Aligned_cols=97 Identities=22% Similarity=0.269 Sum_probs=80.2
Q ss_pred CeEEeccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEE
Q psy16426 56 PMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVS 135 (194)
Q Consensus 56 p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a 135 (194)
|.|...+..+.+..|+.+.|.|.+.|.|+|.+.|++ ++..+....++.....+. .+.|.|.++..+|.|.|+|.+
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~k-dg~~l~~~~~~~~~~~~~----~s~L~I~~~~~~D~G~Ytc~a 75 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMK-FRKQIQEGEGIKIENTEN----SSKLTITEGQQEHCGCYTLEV 75 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEE-CCEEecCCCcEEEEecCC----eeEEEECCCChhhCEEEEEEE
Confidence 445666777888999999999999999999999999 566555554444332222 468999999999999999999
Q ss_pred EcCCCceEEEEEEEcccCCCCC
Q psy16426 136 KNSLGDTDGSIKLYGKKKKKKK 157 (194)
Q Consensus 136 ~n~~g~~~~~~~l~v~~~p~~p 157 (194)
.|..|...+++.|.|.+.|..|
T Consensus 76 ~N~~G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 76 ENKLGSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred EcCCCceeEEEEEEEecCCCCC
Confidence 9999999999999999988776
No 4
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.67 E-value=1.4e-15 Score=97.78 Aligned_cols=87 Identities=23% Similarity=0.377 Sum_probs=69.3
Q ss_pred CCeEEEEEEeeccCCCccEEEecCcEEeeC-CCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16426 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQ-GSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148 (194)
Q Consensus 70 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l 148 (194)
|+.+.|.|.+.|.|++.+.|++ ++..+.. ..++............++|.|.++..+|.|.|+|.|.|.+|...+.+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k-~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEK-EDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEee-CCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence 6789999999999999999999 5554432 2344322222233446789999999999999999999999999999999
Q ss_pred EcccCCCCC
Q psy16426 149 YGKKKKKKK 157 (194)
Q Consensus 149 ~v~~~p~~p 157 (194)
.|...|+.|
T Consensus 80 ~V~~~P~~P 88 (88)
T cd05735 80 TVQEPPDPP 88 (88)
T ss_pred EEeCCCCCC
Confidence 999988876
No 5
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.60 E-value=1.9e-14 Score=92.50 Aligned_cols=87 Identities=24% Similarity=0.405 Sum_probs=69.6
Q ss_pred CCeEEeccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEE
Q psy16426 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCV 134 (194)
Q Consensus 55 ~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~ 134 (194)
+|.|........+.+|+.+.|.|.+.|.|.|.++|++++ .......+. ... ...|.|.++..+|.|.|+|.
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~-~~~~~~~~~---~~~-----~~~L~I~~v~~~D~G~Y~C~ 71 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKIL-EPMPATAEI---SMS-----GAVLKIFNIQPEDEGTYECE 71 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECC-cCCCCCCEE---ecC-----CCEEEECcCChhhCEEEEEE
Confidence 466777777888899999999999999999999999944 333322211 111 23799999999999999999
Q ss_pred EEcCCCceEEEEEEEc
Q psy16426 135 SKNSLGDTDGSIKLYG 150 (194)
Q Consensus 135 a~n~~g~~~~~~~l~v 150 (194)
|.|..|.....+.|.|
T Consensus 72 A~N~~G~~~~~~~l~V 87 (88)
T cd05851 72 AENIKGKDKHQARVYV 87 (88)
T ss_pred EEcCCCceEEEEEEEE
Confidence 9999999998888876
No 6
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.60 E-value=2e-14 Score=96.04 Aligned_cols=103 Identities=23% Similarity=0.379 Sum_probs=73.3
Q ss_pred EeeCCeEEeccceeEE----eeCCeEEEEEEeeccCCCccEEEecCcEEee-CCCceeEEecCCceeEEEEEEEeecC-C
Q psy16426 52 AQVPPMIWIQNQLVGA----MEGDQMTLECHSEAYPKSINYWTKENGEIIA-QGSKYEPILLDNAYKIHMKLTIKAVT-K 125 (194)
Q Consensus 52 v~~~p~i~~~~~~~~~----~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~-~ 125 (194)
|.++|.|...+....+ ..|..+.|.|.+.|.|.+.++|++ ++..+. ...++............+.|.|.++. .
T Consensus 1 v~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k-~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~ 79 (109)
T cd05773 1 VRFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAK-NGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAA 79 (109)
T ss_pred CccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEE-CCEECCCCCCeEEEEeeccCccceeEEEECcCCcc
Confidence 4567777655542222 245789999999999999999999 555443 22233222222212224689999987 5
Q ss_pred CCCeEEEEEEEcCCCceEEEEEEEcccCCC
Q psy16426 126 QDFGAYKCVSKNSLGDTDGSIKLYGKKKKK 155 (194)
Q Consensus 126 ~d~g~y~C~a~n~~g~~~~~~~l~v~~~p~ 155 (194)
+|.|.|+|.|.|.+|.....+.|.+...|+
T Consensus 80 ~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p~ 109 (109)
T cd05773 80 LDYALFTCTAHNSLGEDSLDIQLVSTSRPD 109 (109)
T ss_pred CCCEEEEEEEEeCCccCcEEEEEEecCCCC
Confidence 899999999999999999999999887763
No 7
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.59 E-value=5.4e-14 Score=91.17 Aligned_cols=86 Identities=28% Similarity=0.409 Sum_probs=67.7
Q ss_pred ccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCC
Q psy16426 61 QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140 (194)
Q Consensus 61 ~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g 140 (194)
.+..+.+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....++.....++. .++|.|.++..+|+|.|+|.|.|..|
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k-~g~~l~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLK-NDQALALSDHYNVKVEQGK---YASLTIKGVSSEDSGKYGIVVKNKYG 82 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEE-CCEECccCCCEEEEEcCCC---EEEEEEccCChhhCEEEEEEEEECCC
Confidence 3455678899999999999999999999999 5555544444443222221 35899999999999999999999999
Q ss_pred ceEEEEEEEc
Q psy16426 141 DTDGSIKLYG 150 (194)
Q Consensus 141 ~~~~~~~l~v 150 (194)
.....+.|.|
T Consensus 83 ~~~~~~~v~v 92 (92)
T cd05737 83 GETVDVTVSV 92 (92)
T ss_pred cceEEEEEeC
Confidence 9998888764
No 8
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.59 E-value=6.3e-14 Score=89.68 Aligned_cols=82 Identities=13% Similarity=0.304 Sum_probs=65.2
Q ss_pred eeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCC-CceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCce
Q psy16426 64 LVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQG-SKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDT 142 (194)
Q Consensus 64 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~ 142 (194)
.+.+..|+.+.|.|.+.|.|.|.+.|++ ++..+... .++.....+. .+.|.|.++..+|+|.|+|.|.|.+|..
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k-~~~~i~~~~~r~~~~~~~~----~~~L~I~~~~~~D~G~Y~c~a~N~~G~~ 78 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSR-GDKAFTETEGRVRVESYKD----LSSFVIEGAEREDEGVYTITVTNPVGED 78 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEE-CCEECccCCCeEEEEEcCC----eEEEEECCCccCcCEEEEEEEEeCCCcE
Confidence 4567889999999999999999999999 55544332 2333222221 4689999999999999999999999999
Q ss_pred EEEEEEEc
Q psy16426 143 DGSIKLYG 150 (194)
Q Consensus 143 ~~~~~l~v 150 (194)
.+++.|.|
T Consensus 79 ~~~~~l~V 86 (86)
T cd05894 79 HASLFVKV 86 (86)
T ss_pred EEEEEEEC
Confidence 99888865
No 9
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.58 E-value=6.5e-14 Score=92.16 Aligned_cols=88 Identities=17% Similarity=0.245 Sum_probs=68.4
Q ss_pred ceeEEeeCCeEEEEEEeec-cCCCccEEEecCcEEeeCCCceeEEecC-CceeEEEEEEEeecCCCCCeEEEEEEEcCCC
Q psy16426 63 QLVGAMEGDQMTLECHSEA-YPKSINYWTKENGEIIAQGSKYEPILLD-NAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140 (194)
Q Consensus 63 ~~~~~~~g~~~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g 140 (194)
..+.+.+|+++.|.|.+.| .|+|.+.|++ ++..+...........+ ......+.|.|.++..+|.|.|+|.|.|..|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~K-dg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTY-DNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEe-CCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 5677889999999999999 8899999999 66655543332211111 1223457999999999999999999999999
Q ss_pred ceEEEEEEEcc
Q psy16426 141 DTDGSIKLYGK 151 (194)
Q Consensus 141 ~~~~~~~l~v~ 151 (194)
....++.|.|.
T Consensus 90 ~~~~t~~L~V~ 100 (101)
T cd04975 90 SKSLTFELYVN 100 (101)
T ss_pred cEEEEEEEEEE
Confidence 99988888764
No 10
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.58 E-value=5.7e-14 Score=91.03 Aligned_cols=89 Identities=22% Similarity=0.430 Sum_probs=71.2
Q ss_pred CCeEEeccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEE
Q psy16426 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCV 134 (194)
Q Consensus 55 ~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~ 134 (194)
||.|...+....+..|+.+.|.|.+.+.|.|.+.|++ ++..+....++...... ..++|.|.++..+|.|.|.|.
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k-~g~~l~~~~~~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~ 77 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMR-EGQIIVSSQRHQITSTE----YKSTFEISKVQMSDEGNYTVV 77 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEE-CCEECCCCCcEEEEEcC----CeeEEEECCCCcccCEeEEEE
Confidence 5667667778889999999999999999999999999 55554444444322221 146999999999999999999
Q ss_pred EEcCCCceEEEEEE
Q psy16426 135 SKNSLGDTDGSIKL 148 (194)
Q Consensus 135 a~n~~g~~~~~~~l 148 (194)
+.|..|....++.|
T Consensus 78 a~N~~G~~~~~~~l 91 (92)
T cd05747 78 VENSEGKQEAQFTL 91 (92)
T ss_pred EEcCCCCEeEEEEe
Confidence 99999998888776
No 11
>KOG4221|consensus
Probab=99.56 E-value=8.6e-14 Score=120.87 Aligned_cols=145 Identities=23% Similarity=0.323 Sum_probs=106.2
Q ss_pred cccccCCeEEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCceEE--------------------------------
Q psy16426 4 QGQNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEII-------------------------------- 51 (194)
Q Consensus 4 ~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~l~-------------------------------- 51 (194)
+.+...+.+...+.+..+.+|+++-|.|.+.+.+.+.++|.+++..+.
T Consensus 135 v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~ 214 (1381)
T KOG4221|consen 135 VALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTG 214 (1381)
T ss_pred EEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEec
Confidence 334566788888888999999999999999999999999999876443
Q ss_pred -------------Eee------CCeEEeccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCce
Q psy16426 52 -------------AQV------PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAY 112 (194)
Q Consensus 52 -------------v~~------~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~ 112 (194)
|.. .-.|...+....+.+|+++.|.|.+.+.|.|.+.|.+ |+..+...+ ..+.+..
T Consensus 215 g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlr-ng~~i~~ds-~rivl~g--- 289 (1381)
T KOG4221|consen 215 GASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLR-NGEKISVDS-YRIVLVG--- 289 (1381)
T ss_pred CCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEee-CCeeeeecc-eEEEEec---
Confidence 111 1123334556667899999999999999999999999 555443332 3333332
Q ss_pred eEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEcccCCC
Q psy16426 113 KIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKK 155 (194)
Q Consensus 113 ~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v~~~p~ 155 (194)
.++|.|.+++..|+|.|+|.|.|..-...+...|.|..+|.
T Consensus 290 --~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~ 330 (1381)
T KOG4221|consen 290 --GSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPG 330 (1381)
T ss_pred --ccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCC
Confidence 35899999999999999999999544444444555554444
No 12
>KOG4194|consensus
Probab=99.56 E-value=3.5e-14 Score=116.26 Aligned_cols=142 Identities=20% Similarity=0.328 Sum_probs=114.0
Q ss_pred cCCeEEEcCCeeeeeCCCcEEEEeeeecc--CCceeEEEecCceEE----------------------------------
Q psy16426 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAY--PKSINYWTKENGEII---------------------------------- 51 (194)
Q Consensus 8 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~--p~~~v~W~k~~~~l~---------------------------------- 51 (194)
-.|.|...|.++....|.+++|+|.+.++ .+..+.|-+++..+.
T Consensus 502 pkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV 581 (873)
T KOG4194|consen 502 PKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV 581 (873)
T ss_pred CCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence 35889999998889999999999998873 455899999765332
Q ss_pred ---------------------------EeeCCeEEeccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCC--c
Q psy16426 52 ---------------------------AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGS--K 102 (194)
Q Consensus 52 ---------------------------v~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~--~ 102 (194)
|...|.+...+..+....|+...|.|.+.|.|.|.+.|-++++.-++... +
T Consensus 582 t~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRR 661 (873)
T KOG4194|consen 582 TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERR 661 (873)
T ss_pred ecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhhe
Confidence 56678888788888889999999999999999999999986665444332 3
Q ss_pred eeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEcccCCC
Q psy16426 103 YEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKK 155 (194)
Q Consensus 103 ~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v~~~p~ 155 (194)
+.....|+ .+.|.++..+|.|.|+|.|.|.+|..++...|.|.+.|.
T Consensus 662 l~Vmpedd------~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~ 708 (873)
T KOG4194|consen 662 LHVMPEDD------VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPS 708 (873)
T ss_pred eeecCCCC------EEEEecccccccceeEEeeeccccceeeceEEEEecCCc
Confidence 33222222 778999999999999999999999999998898887654
No 13
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.55 E-value=9.6e-14 Score=90.87 Aligned_cols=93 Identities=23% Similarity=0.307 Sum_probs=66.3
Q ss_pred CCeEEeccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCc---eeEEecCCceeEEEEEEEeecCCCCCeEE
Q psy16426 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSK---YEPILLDNAYKIHMKLTIKAVTKQDFGAY 131 (194)
Q Consensus 55 ~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~g~y 131 (194)
.|.|...+....+..|+.+.|.|.+.|.|.|.++|++ ++..+..... ....... ....+.|.|.++..+|.|.|
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~-~~~~~~~~~~~~~~~~~v~~--~~~~~~L~I~~v~~~D~G~Y 78 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRT-STRNISSEEKTLDGHIVVRS--HARVSSLTLKYIQYTDAGEY 78 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEE-CCccccCCccccCccEEEEc--CccEEEEEEecCccCcCEEE
Confidence 4556555544445568999999999999999999998 4433221110 0111111 11246899999999999999
Q ss_pred EEEEEcCCCceEEEEEEEc
Q psy16426 132 KCVSKNSLGDTDGSIKLYG 150 (194)
Q Consensus 132 ~C~a~n~~g~~~~~~~l~v 150 (194)
+|.|.|..|...+++.|.|
T Consensus 79 ~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 79 LCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEecCCCCeeEEEEEEC
Confidence 9999999999999888865
No 14
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.55 E-value=2.3e-13 Score=87.61 Aligned_cols=90 Identities=33% Similarity=0.540 Sum_probs=74.3
Q ss_pred CeEEeccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEE
Q psy16426 56 PMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVS 135 (194)
Q Consensus 56 p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a 135 (194)
|.|...+..+.+.+|+++.|.|.+.+.|.+.+.|++ ++..+....++.....+. .++|.|.++..+|.|.|+|.+
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~-~~~~l~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~~ 75 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYK-NGRPLTSSQRYQIESDGG----SSSLTIKNVTREDAGTYTCVA 75 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEE-TTEEEESSSSEEEEEETT----EEEEEESSESGGGSEEEEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccc-cccceeeeeeeeeecccc----eeEEccCCCChhhCEEEEEEE
Confidence 456666678889999999999999999999999999 566666555655443332 579999999999999999999
Q ss_pred EcCCCceEEEEEEEc
Q psy16426 136 KNSLGDTDGSIKLYG 150 (194)
Q Consensus 136 ~n~~g~~~~~~~l~v 150 (194)
.|..|...+.+.|.|
T Consensus 76 ~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 76 SNSSGEATASVNLTV 90 (90)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred EECCCEEEEEEEEEC
Confidence 999999988888764
No 15
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.54 E-value=2.3e-13 Score=88.79 Aligned_cols=88 Identities=23% Similarity=0.327 Sum_probs=65.5
Q ss_pred eccceeEEeeCCeEEEEEEeeccCC-CccEEEecCcEEeeC-CCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEc
Q psy16426 60 IQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQ-GSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKN 137 (194)
Q Consensus 60 ~~~~~~~~~~g~~~~l~C~~~~~p~-p~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n 137 (194)
+.+....+..|+.+.|.|.+.|.|. |.++|+++++..+.. ..++.....+. ..++|.|.++..+|.|.|+|.|.|
T Consensus 5 ~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~---~~~~L~I~~v~~~D~G~YtC~A~N 81 (96)
T cd05865 5 IVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDD---YSSTLTIYNANIDDAGIYKCVVSN 81 (96)
T ss_pred EeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCC---CceEEEEeccChhhCEEEEEEEEc
Confidence 4455566888999999999999984 799999745543333 32332221111 246899999999999999999999
Q ss_pred CC-CceEEEEEEEc
Q psy16426 138 SL-GDTDGSIKLYG 150 (194)
Q Consensus 138 ~~-g~~~~~~~l~v 150 (194)
.. |...+++.|.|
T Consensus 82 ~~~g~~~~s~~l~v 95 (96)
T cd05865 82 EDEGESEATVNVKI 95 (96)
T ss_pred CCCCcEEEEEEEEE
Confidence 97 88888888765
No 16
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.54 E-value=9.9e-14 Score=86.33 Aligned_cols=74 Identities=28% Similarity=0.450 Sum_probs=57.1
Q ss_pred EEEEEEeeccCCCccEEEecCcEEee-CCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEc
Q psy16426 73 MTLECHSEAYPKSINYWTKENGEIIA-QGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYG 150 (194)
Q Consensus 73 ~~l~C~~~~~p~p~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v 150 (194)
+.|.|.+.|.|.|.+.|++ ++..+. ...++... .++. ...+|.|.++..+|.|.|+|.|.|..|...+...|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k-~~~~i~~~~~r~~~~-~~~~--g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKR-NNEMVQYNTDRISLY-QDNS--GRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEE-CCEECcCCCCeEEEE-EcCC--CcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 4689999999999999999 555544 33344322 2221 1248999999999999999999999999998888764
No 17
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.53 E-value=2.5e-13 Score=88.53 Aligned_cols=90 Identities=32% Similarity=0.584 Sum_probs=67.4
Q ss_pred CCeEEecc--ceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCC-CceeEEecCCceeEEEEEEEeecCCCCCeEE
Q psy16426 55 PPMIWIQN--QLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQG-SKYEPILLDNAYKIHMKLTIKAVTKQDFGAY 131 (194)
Q Consensus 55 ~p~i~~~~--~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y 131 (194)
||.|.... ....+..|+.+.|.|.+.|.|.|.+.|++ ++..+... .++ ..... .+.|.|.++..+|.|.|
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k-~g~~~~~~~~~~--~~~~~----~~~L~I~~v~~~D~G~Y 73 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTK-DGEPIESGEEKY--SFNED----GSEMTILDVDKLDEAEY 73 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEE-CCEECcCCCCEE--EEeCC----CCEEEECCCChhhCEEE
Confidence 34444433 23457889999999999999999999999 55544332 222 11111 24799999999999999
Q ss_pred EEEEEcCCCceEEEEEEEcc
Q psy16426 132 KCVSKNSLGDTDGSIKLYGK 151 (194)
Q Consensus 132 ~C~a~n~~g~~~~~~~l~v~ 151 (194)
+|.|.|..|...+++.|.|.
T Consensus 74 ~C~a~N~~G~~~~~~~L~V~ 93 (95)
T cd05730 74 TCIAENKAGEQEAEIHLKVF 93 (95)
T ss_pred EEEEEcCCCeEEEEEEEEEE
Confidence 99999999999998888774
No 18
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.52 E-value=1.4e-13 Score=85.59 Aligned_cols=74 Identities=27% Similarity=0.522 Sum_probs=59.4
Q ss_pred eCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16426 69 EGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148 (194)
Q Consensus 69 ~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l 148 (194)
+|+.+.|.|.+.|.|.|.+.|++ ++..+....+.. ... .++|.|.++..+|.|.|+|.|.|..|....++.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k-~g~~~~~~~~~~--~~~-----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 72 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTK-GGSQLSVDRRHL--VLS-----SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQL 72 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEE-CCEECCCCCCeE--Ecc-----CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence 58899999999999999999999 555443332221 112 2489999999999999999999999999998888
Q ss_pred Ec
Q psy16426 149 YG 150 (194)
Q Consensus 149 ~v 150 (194)
.|
T Consensus 73 ~V 74 (74)
T cd05745 73 TV 74 (74)
T ss_pred eC
Confidence 65
No 19
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.52 E-value=3.8e-13 Score=87.15 Aligned_cols=86 Identities=28% Similarity=0.380 Sum_probs=67.0
Q ss_pred ccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCC
Q psy16426 61 QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140 (194)
Q Consensus 61 ~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g 140 (194)
.+..+.+.+|+.+.|.|.+.+.|.|.+.|+++ +.......++.....++. .++|.|.++..+|.|.|+|.+.|.+|
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~-~~~~~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G 82 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKN-DQDIELSEHYSVKLEQGK---YASLTIKGVTSEDSGKYSINVKNKYG 82 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEEC-CEECCCCCCEEEEEcCCC---EEEEEECCCChhhCEEEEEEEEeCCC
Confidence 34567788999999999999999999999994 444444434432222222 25799999999999999999999999
Q ss_pred ceEEEEEEEc
Q psy16426 141 DTDGSIKLYG 150 (194)
Q Consensus 141 ~~~~~~~l~v 150 (194)
.....+.|.|
T Consensus 83 ~~~~~~~v~~ 92 (92)
T cd05891 83 GETVDVTVSV 92 (92)
T ss_pred ceeeEEEEEC
Confidence 9999888864
No 20
>KOG4194|consensus
Probab=99.52 E-value=1.1e-13 Score=113.46 Aligned_cols=144 Identities=24% Similarity=0.336 Sum_probs=112.3
Q ss_pred ccccccCCeEEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCceEE-------------------------------
Q psy16426 3 KQGQNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEII------------------------------- 51 (194)
Q Consensus 3 ~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~l~------------------------------- 51 (194)
.+.|..-|.|+..|++.++..|+.+.|.|.+.|.|.|.|.|.++++.-.
T Consensus 606 KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYt 685 (873)
T KOG4194|consen 606 KLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYT 685 (873)
T ss_pred EEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeE
Confidence 3556778999999999999999999999999999999999999887621
Q ss_pred -----------------EeeCCeEEeccceeEEeeCCeEEEEEEeeccCC-CccEEEecCcEEeeCCCceeEEecCCcee
Q psy16426 52 -----------------AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLDNAYK 113 (194)
Q Consensus 52 -----------------v~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~-p~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 113 (194)
|...|.+..+-....+..|+.+.|.|.+.+.|. |++.|++++..+.- ..+.. ..++
T Consensus 686 C~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~-t~rh~--f~d~--- 759 (873)
T KOG4194|consen 686 CTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILI-TERHT--FPDG--- 759 (873)
T ss_pred EeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEE-eeccc--CCCC---
Confidence 334455555556677889999999999999887 99999995544332 22211 2222
Q ss_pred EEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEcccC
Q psy16426 114 IHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKK 153 (194)
Q Consensus 114 ~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v~~~ 153 (194)
.-.|.+.+...+|.|.|+|...|..|.....+.+.+...
T Consensus 760 -dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~ 798 (873)
T KOG4194|consen 760 -DQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQK 798 (873)
T ss_pred -CeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeec
Confidence 247888888899999999999999998888777665443
No 21
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.51 E-value=2.2e-13 Score=84.38 Aligned_cols=73 Identities=30% Similarity=0.550 Sum_probs=59.0
Q ss_pred CCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16426 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149 (194)
Q Consensus 70 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~ 149 (194)
|+++.|.|.+.|.|.|.+.|++ ++..+....++. ... .++|.|.++..+|.|.|+|.|.|..|...++..|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k-~~~~l~~~~r~~--~~~-----~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSK-GTELLVNNSRIS--IWD-----DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEe-CCEecccCCCEE--EcC-----CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 6789999999999999999999 555444444433 222 23899999999999999999999999999988876
Q ss_pred c
Q psy16426 150 G 150 (194)
Q Consensus 150 v 150 (194)
|
T Consensus 73 ~ 73 (73)
T cd05852 73 V 73 (73)
T ss_pred C
Confidence 4
No 22
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.51 E-value=3e-13 Score=88.26 Aligned_cols=90 Identities=27% Similarity=0.371 Sum_probs=66.5
Q ss_pred CCeEEeccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCC-----CceeEEecCCceeEEEEEEEeecCCCCCe
Q psy16426 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQG-----SKYEPILLDNAYKIHMKLTIKAVTKQDFG 129 (194)
Q Consensus 55 ~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~i~~~~~~d~g 129 (194)
+|.|. ......+.+|+.+.|.|.+.|.|.|.+.|++++ ...... .++. ... ....+.|.|.++..+|.|
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~-~~~~~~~~~~~~~~~--~~~--~~~~~~L~I~~v~~~D~G 75 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRAT-RNFSEGDKSLDGRIV--VRG--HARVSSLTLKDVQLTDAG 75 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECC-cccCCCCccccceEE--EeC--CccEEEEEECcCCcCcCE
Confidence 45554 334566789999999999999999999999944 332221 1111 111 112468999999999999
Q ss_pred EEEEEEEcCCCceEEEEEEEc
Q psy16426 130 AYKCVSKNSLGDTDGSIKLYG 150 (194)
Q Consensus 130 ~y~C~a~n~~g~~~~~~~l~v 150 (194)
.|+|.|.|..|....++.|.|
T Consensus 76 ~Y~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 76 RYDCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EeEEEEEeCCCCcEEEEEEeC
Confidence 999999999999988888764
No 23
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.51 E-value=7.7e-13 Score=85.35 Aligned_cols=84 Identities=19% Similarity=0.276 Sum_probs=63.9
Q ss_pred cceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCc
Q psy16426 62 NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGD 141 (194)
Q Consensus 62 ~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~ 141 (194)
+....+..|+.+.|.|.+.|.|.|.++|++ ++.............. ...+.|.|.++...|.|.|.|.|.|..|.
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~-~g~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~ 81 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPKVEWII-AGLIVIQTRTDTLETT----VDIYNLQLSNITSETQTTVTCTAENPVGQ 81 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCeEEEEE-CCEEccCCccEEEEec----CCEEEEEEecCCcccCEEEEEEEECCCCc
Confidence 344557899999999999999999999999 4444333222111111 12458999999999999999999999999
Q ss_pred eEEEEEEEc
Q psy16426 142 TDGSIKLYG 150 (194)
Q Consensus 142 ~~~~~~l~v 150 (194)
..+++.|.|
T Consensus 82 ~~~~~~L~v 90 (90)
T cd04972 82 ANVSVQVTV 90 (90)
T ss_pred eeEEEEEeC
Confidence 998888764
No 24
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.51 E-value=2.1e-13 Score=84.89 Aligned_cols=74 Identities=27% Similarity=0.404 Sum_probs=55.9
Q ss_pred EEEEEEeeccCCCccEEEecCcEEeeC-CCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEc
Q psy16426 73 MTLECHSEAYPKSINYWTKENGEIIAQ-GSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYG 150 (194)
Q Consensus 73 ~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v 150 (194)
+.|.|.+.|.|.|.++|++ ++..+.. ..++.. ..++. ...+|.|.++..+|.|.|+|.|.|..|...++..|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k-~~~~l~~~~~~~~~-~~~~~--~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKK-ENESLTHNTDRVSM-HQDNC--GYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEE-CCEECCCCCCeEEE-EEcCC--CEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 4689999999999999999 4444433 333332 11211 1347999999999999999999999999998888764
No 25
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.51 E-value=5.2e-13 Score=85.78 Aligned_cols=86 Identities=23% Similarity=0.402 Sum_probs=67.4
Q ss_pred CeEEeccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEE
Q psy16426 56 PMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVS 135 (194)
Q Consensus 56 p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a 135 (194)
+.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++...... ... . . ....|.|.+++.+|.|.|+|.+
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~--~-~-----~~~~L~i~~v~~~D~G~Y~C~a 72 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSS-AEI--S-M-----SGAVLKIPNIQFEDEGTYECEA 72 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCc-cEE--E-E-----eCCEEEECCCCcccCEEEEEEE
Confidence 44555666777889999999999999999999999954433222 111 1 1 1348999999999999999999
Q ss_pred EcCCCceEEEEEEEc
Q psy16426 136 KNSLGDTDGSIKLYG 150 (194)
Q Consensus 136 ~n~~g~~~~~~~l~v 150 (194)
.|..|...+...|.|
T Consensus 73 ~N~~G~~~~~~~l~V 87 (88)
T cd04968 73 ENIKGKDTHQGRIYV 87 (88)
T ss_pred EECCCcEEEEEEEEE
Confidence 999999988888876
No 26
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.50 E-value=4.2e-13 Score=88.33 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=66.4
Q ss_pred eeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecC--CceeEEEEEEEeecCCCCCeEEEEEEEcCCCc
Q psy16426 64 LVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLD--NAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGD 141 (194)
Q Consensus 64 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~ 141 (194)
...+..|+.+.|.|.+.|+|+|.+.|++ ++..+............ ..+...++|.|.++..+|.|.|+|.|.|..|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~k-dg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLK-DNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEE-CCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 5567788999999999999999999999 66655444322111111 01233569999999999999999999999999
Q ss_pred eEEEEEEEcc
Q psy16426 142 TDGSIKLYGK 151 (194)
Q Consensus 142 ~~~~~~l~v~ 151 (194)
...++.|.|.
T Consensus 91 ~~~t~~l~V~ 100 (101)
T cd05859 91 KSYTFALQIQ 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9888887763
No 27
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.50 E-value=4.9e-13 Score=87.67 Aligned_cols=91 Identities=23% Similarity=0.321 Sum_probs=66.9
Q ss_pred CCeEEeccceeEEeeCCeEEEEEEeeccCCCccEEEecCc-EEeeC-----CCceeEEecCCceeEEEEEEEeecCCCCC
Q psy16426 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENG-EIIAQ-----GSKYEPILLDNAYKIHMKLTIKAVTKQDF 128 (194)
Q Consensus 55 ~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 128 (194)
+|.|.. ..+..+.+|+.+.|.|.+.|.|.|.++|++.+. ..+.. ..++.. ... ...++|.|.+++.+|.
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v-~~~---~~~~~L~I~~v~~~D~ 76 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEV-KGQ---HGESSLHIKDVKLSDS 76 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEE-eec---CCeeEEEEeeCCcCCC
Confidence 466653 456778899999999999999999999998432 22211 112221 111 1135899999999999
Q ss_pred eEEEEEEEcCCCceEEEEEEEc
Q psy16426 129 GAYKCVSKNSLGDTDGSIKLYG 150 (194)
Q Consensus 129 g~y~C~a~n~~g~~~~~~~l~v 150 (194)
|.|+|.|.|..|....++.|.|
T Consensus 77 G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 77 GRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEEEeccCCcceeEEEEeC
Confidence 9999999999999988888754
No 28
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.50 E-value=6.2e-13 Score=82.55 Aligned_cols=74 Identities=22% Similarity=0.350 Sum_probs=59.0
Q ss_pred eEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEc
Q psy16426 72 QMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYG 150 (194)
Q Consensus 72 ~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v 150 (194)
.+.|.|.+.|.|.|.+.|++ ++..+....++.....+. .+.|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k-~g~~l~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSK-DGKPLKLSGRVQIETTAS----STSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEE-CCEEcCCCCeEEEEECCC----eEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 36899999999999999999 555554444444332222 468999999999999999999999999998888765
No 29
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.49 E-value=5.7e-13 Score=83.20 Aligned_cols=74 Identities=22% Similarity=0.381 Sum_probs=57.9
Q ss_pred CCeEEEEEEeeccCCCccEEEecCcEEeeCCCce-eEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16426 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKY-EPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148 (194)
Q Consensus 70 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l 148 (194)
|+.+.|.|.+.|.|.|.++|++ ++..+...... ... .. .+.|.|.+++.+|.|.|.|.|.|..|...+...|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k-~g~~i~~~~~~~~~~-~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 73 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSI-NGAPIEGTDPDPRRH-VS-----SGALILTDVQPSDTAVYQCEARNRHGNLLANAHV 73 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEE-CCEECCCCCCCceEE-ee-----CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEE
Confidence 6789999999999999999999 55544332111 111 11 2489999999999999999999999999888888
Q ss_pred Ec
Q psy16426 149 YG 150 (194)
Q Consensus 149 ~v 150 (194)
.|
T Consensus 74 ~V 75 (76)
T cd05867 74 HV 75 (76)
T ss_pred EE
Confidence 76
No 30
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.49 E-value=5.8e-13 Score=82.96 Aligned_cols=74 Identities=24% Similarity=0.369 Sum_probs=56.4
Q ss_pred EEEEEEeeccCCCccEEEecCcEEee-CCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEc
Q psy16426 73 MTLECHSEAYPKSINYWTKENGEIIA-QGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYG 150 (194)
Q Consensus 73 ~~l~C~~~~~p~p~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v 150 (194)
+.|.|.+.|.|.|.++|++ ++..+. ...++.....+. ...+|.|.++..+|.|.|+|.|.|..|...++..|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k-~~~~i~~~~~r~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKK-NNEMLTYNTDRISLYQDNC---GRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEE-CCEECCCCCCcEEEEEcCC---CeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 4689999999999999999 555544 333333221111 1347999999999999999999999999998888764
No 31
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.48 E-value=1.7e-12 Score=83.90 Aligned_cols=87 Identities=22% Similarity=0.352 Sum_probs=65.5
Q ss_pred EeccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcC
Q psy16426 59 WIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNS 138 (194)
Q Consensus 59 ~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~ 138 (194)
.+.+....+..|+.+.|.|.+.|.|. .+.|+++++.......++.. ..++ ..++|.|.++..+|.|.|+|.|.|.
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~-~~~g---~~~~L~I~~v~~~D~G~Y~C~A~N~ 78 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVV-QKEG---VRSRLTIYNANIEDAGIYRCQATDA 78 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEE-EeCC---CeeEEEEecCChHHCEEEEEEEEcC
Confidence 34556677889999999999999887 89999866665554444432 2222 1358999999999999999999999
Q ss_pred CCce-EEEEEEEc
Q psy16426 139 LGDT-DGSIKLYG 150 (194)
Q Consensus 139 ~g~~-~~~~~l~v 150 (194)
.|.. ..++.|.+
T Consensus 79 ~G~~~~~~i~l~~ 91 (92)
T cd05866 79 KGQTQEATVVLEI 91 (92)
T ss_pred CCcEEEEEEEEEE
Confidence 9986 45666643
No 32
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.47 E-value=6.4e-13 Score=82.98 Aligned_cols=76 Identities=21% Similarity=0.304 Sum_probs=58.4
Q ss_pred CCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16426 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149 (194)
Q Consensus 70 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~ 149 (194)
|+.+.|.|.+.|.|.|.+.|++ ++..+...........++ ..|.|.++...|.|.|+|.|.|..|...+++.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k-~g~~i~~~~~~~~~~~~~-----~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLT-NGVPIEIAPTDPSRKVDG-----DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVN 74 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEE-CCEEccccCCCceEEecC-----CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence 5788999999999999999999 555443221111111222 3788999999999999999999999999998887
Q ss_pred cc
Q psy16426 150 GK 151 (194)
Q Consensus 150 v~ 151 (194)
|+
T Consensus 75 v~ 76 (76)
T cd05868 75 VL 76 (76)
T ss_pred eC
Confidence 63
No 33
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.47 E-value=1.1e-12 Score=83.69 Aligned_cols=82 Identities=23% Similarity=0.417 Sum_probs=62.1
Q ss_pred eEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy16426 65 VGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDG 144 (194)
Q Consensus 65 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~ 144 (194)
+.+..|+.+.|.|.+.|.|.|.+.|++ ++..+............. ....|.|.++..+|.|.|+|.+.|..|...+
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k-~g~~l~~~~~~~~~~~~~---~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~ 79 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLK-NGKEFKQEHRIGGYKVRN---QHWSLIMESVVPSDKGNYTCVVENEYGSINH 79 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEE-CCEECCCCCceeeeEEeC---CceEEEEccCCcccCEEEEEEEEeCCCEEEE
Confidence 446789999999999999999999999 555443332221111111 1347899999999999999999999999999
Q ss_pred EEEEEc
Q psy16426 145 SIKLYG 150 (194)
Q Consensus 145 ~~~l~v 150 (194)
++.|.|
T Consensus 80 ~~~l~v 85 (85)
T cd05857 80 TYHLDV 85 (85)
T ss_pred EEEEEC
Confidence 888865
No 34
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.47 E-value=1.9e-12 Score=84.72 Aligned_cols=94 Identities=27% Similarity=0.429 Sum_probs=63.5
Q ss_pred CCeEEeccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeC----CCceeEEecCCceeEEEEEEEeecCCCCCeE
Q psy16426 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQ----GSKYEPILLDNAYKIHMKLTIKAVTKQDFGA 130 (194)
Q Consensus 55 ~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~ 130 (194)
+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.. .........++. .....+.+..+..+|.|.
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~g~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~D~G~ 78 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLK-NGQPLETDKDDPRSHRIVLPSGS-LFFLRVVHGRKGRSDEGV 78 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEE-CCEECccccCCCCcceEEecCCc-EEEEEeeccCCCcCcCEE
Confidence 4677777778888999999999999999999999999 5554433 111111122221 111122223346899999
Q ss_pred EEEEEEcCCCc-eEEEEEEEc
Q psy16426 131 YKCVSKNSLGD-TDGSIKLYG 150 (194)
Q Consensus 131 y~C~a~n~~g~-~~~~~~l~v 150 (194)
|+|.+.|..|. ....+.|.|
T Consensus 79 Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 79 YVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEccccceecceEEEEe
Confidence 99999999998 455666655
No 35
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.47 E-value=8.5e-13 Score=84.24 Aligned_cols=81 Identities=27% Similarity=0.442 Sum_probs=65.0
Q ss_pred ccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCC
Q psy16426 61 QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140 (194)
Q Consensus 61 ~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g 140 (194)
.+....+..|+.+.|.|.+.|.|.|.+.|++ ++..+....++. . . ...|.|.++..+|.|.|+|.|.|..|
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k-~g~~~~~~~~~~--~-~-----~~~L~i~~~~~~D~G~Y~C~a~N~~G 75 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPRPAYRWLK-NGQPLASENRIE--V-E-----AGDLRITKLSLSDSGMYQCVAENKHG 75 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCCCEEEEEE-CCEECCCCCeEE--E-e-----CCEEEEeeCCHHHCEEEEEEEECCCC
Confidence 4456678899999999999999999999999 555544333332 1 1 23799999999999999999999999
Q ss_pred ceEEEEEEEc
Q psy16426 141 DTDGSIKLYG 150 (194)
Q Consensus 141 ~~~~~~~l~v 150 (194)
...+++.|.|
T Consensus 76 ~~~~~~~l~V 85 (85)
T cd05728 76 TIYASAELAV 85 (85)
T ss_pred eEEEEEEEEC
Confidence 9988888764
No 36
>KOG4221|consensus
Probab=99.46 E-value=2e-13 Score=118.61 Aligned_cols=140 Identities=23% Similarity=0.390 Sum_probs=112.6
Q ss_pred CeEEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCceEE--------------------------------------
Q psy16426 10 PMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEII-------------------------------------- 51 (194)
Q Consensus 10 P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~l~-------------------------------------- 51 (194)
-.|...+.+..+.+|+++.|.|.+.+.|.|.|.|++|+..+.
T Consensus 238 ~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~i 317 (1381)
T KOG4221|consen 238 LVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSI 317 (1381)
T ss_pred eeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCccc
Confidence 346777888899999999999999999999999999876654
Q ss_pred -------EeeCCeEEeccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecC
Q psy16426 52 -------AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVT 124 (194)
Q Consensus 52 -------v~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 124 (194)
|..+|.+...+..+.+.++.++.|.|.+.+.|.|.+.|+++++...+ ...+. ...+. .|.|..+-
T Consensus 318 dasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ip-sdy~k--i~~~~-----~lrIlgi~ 389 (1381)
T KOG4221|consen 318 DASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIP-SDYFK--IVGGG-----NLRILGIV 389 (1381)
T ss_pred ccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCc-ccceE--ecCCC-----CcEEEEEe
Confidence 66788888777888888999999999999999999999995555544 43333 22221 38888888
Q ss_pred CCCCeEEEEEEEcCCCceEEEEEEEcccCCCCC
Q psy16426 125 KQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKK 157 (194)
Q Consensus 125 ~~d~g~y~C~a~n~~g~~~~~~~l~v~~~p~~p 157 (194)
..|.|.|.|.+.|..|...+...|.+...|..+
T Consensus 390 ~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~ 422 (1381)
T KOG4221|consen 390 KSDEGFYQCVAENDAGSAQAAAQLEVVPQPASA 422 (1381)
T ss_pred cccchhhhhhhccCcccccchhhheeccCCccc
Confidence 999999999999999999988877665554433
No 37
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.46 E-value=1.3e-12 Score=80.55 Aligned_cols=71 Identities=25% Similarity=0.592 Sum_probs=55.2
Q ss_pred eEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEc
Q psy16426 72 QMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYG 150 (194)
Q Consensus 72 ~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v 150 (194)
++.|.|.+.|.|.|.+.|++ ++........+. ...+ ..|.|.++..+|.|.|+|.|.|..|...+++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k-~g~~~~~~~~~~-~~~~------~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVK-NGDMVIPSDYFK-IVKE------HNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEE-CCeECCCCCCEE-EEec------CCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999999999999999 444443333332 1111 26788899999999999999999999999888864
No 38
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.45 E-value=1.2e-12 Score=81.08 Aligned_cols=73 Identities=30% Similarity=0.540 Sum_probs=58.5
Q ss_pred CCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16426 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149 (194)
Q Consensus 70 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~ 149 (194)
|+++.|.|.+.+.|.|.+.|++ ++.......++. .... .+|.|.++..+|.|.|+|.+.|..|...+++.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k-~~~~~~~~~~~~--~~~~-----~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSK-GTELLTNSSRIC--IWPD-----GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEE-CCEEcccCCCEE--ECCC-----CeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence 6789999999999999999999 454443333332 2222 3799999999999999999999999999998886
Q ss_pred c
Q psy16426 150 G 150 (194)
Q Consensus 150 v 150 (194)
|
T Consensus 73 V 73 (73)
T cd04969 73 V 73 (73)
T ss_pred C
Confidence 5
No 39
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.45 E-value=3.2e-12 Score=83.75 Aligned_cols=92 Identities=26% Similarity=0.380 Sum_probs=66.9
Q ss_pred CCeEEeccceeEEeeCCeEEEEEEeeccCCC-ccEEEecCcEEeeCC--CceeEEecCCceeEEEEEEEeecCCCC-CeE
Q psy16426 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKS-INYWTKENGEIIAQG--SKYEPILLDNAYKIHMKLTIKAVTKQD-FGA 130 (194)
Q Consensus 55 ~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d-~g~ 130 (194)
||.|. ......+..|+.+.|.|.+.|.|.| .+.|++ ++..+... .++.+..........++|.|.++..+| .|.
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~-~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~ 79 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTW-KENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTS 79 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEE-CCEEccCCCCCCEEEEEecCCCceEEEEEECCcccccccee
Confidence 56664 3456668899999999999999998 599998 55444322 344322221112335689999999845 899
Q ss_pred EEEEEEcCCCceEEEEEE
Q psy16426 131 YKCVSKNSLGDTDGSIKL 148 (194)
Q Consensus 131 y~C~a~n~~g~~~~~~~l 148 (194)
|.|.|.|..|...+.+.|
T Consensus 80 Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 80 YNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEEcCCCcccEEEEe
Confidence 999999999999888776
No 40
>KOG4222|consensus
Probab=99.45 E-value=4.4e-13 Score=115.96 Aligned_cols=144 Identities=24% Similarity=0.412 Sum_probs=106.6
Q ss_pred cccCCeEEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCceEE----------------------------------
Q psy16426 6 QNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEII---------------------------------- 51 (194)
Q Consensus 6 v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~l~---------------------------------- 51 (194)
...+|.|+-.+.+..+.-|+.++|.|.+.|.|+|+|.||++|....
T Consensus 28 qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y 107 (1281)
T KOG4222|consen 28 QDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVY 107 (1281)
T ss_pred ccCCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCcee
Confidence 4578999999999999999999999999999999999999874322
Q ss_pred -----------Ee---------eCCeEEeccceeEEeeCCeEEEEEE-eeccCCCccEEEecCcEEeeCCCceeEEecCC
Q psy16426 52 -----------AQ---------VPPMIWIQNQLVGAMEGDQMTLECH-SEAYPKSINYWTKENGEIIAQGSKYEPILLDN 110 (194)
Q Consensus 52 -----------v~---------~~p~i~~~~~~~~~~~g~~~~l~C~-~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~ 110 (194)
|. -+-.+.+.+....+..|+.++|.|. ..+.|.|.+.|.++ +...-........+.++
T Consensus 108 ~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kd-g~pl~~~~~~~~~lisg 186 (1281)
T KOG4222|consen 108 SCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKD-GKPLDHYDVPIIALISG 186 (1281)
T ss_pred EeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecC-CCccccccceeEEEecC
Confidence 00 0111223444566778999999997 46778899999984 44333222222223333
Q ss_pred ceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEE-EEEEEcccCCC
Q psy16426 111 AYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDG-SIKLYGKKKKK 155 (194)
Q Consensus 111 ~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~-~~~l~v~~~p~ 155 (194)
+.|.|.++..+|.|+|.|.+.|..|...+ ...|.|.+.|.
T Consensus 187 -----G~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~ 227 (1281)
T KOG4222|consen 187 -----GNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPW 227 (1281)
T ss_pred -----CcEEEeccccCCCceeeeeecccccccccccceeeeccCCc
Confidence 48999999999999999999999998765 46677777665
No 41
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.44 E-value=2.4e-12 Score=79.85 Aligned_cols=74 Identities=26% Similarity=0.558 Sum_probs=58.8
Q ss_pred CCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16426 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149 (194)
Q Consensus 70 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~ 149 (194)
|+.+.|.|.+.|.|.|.+.|++.++.......+.. . .. ..+|.|..+..+|.|.|+|.|.|..|...+.+.|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~-~-~~-----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTL-V-YD-----NGTLDILITTVKDTGSFTCIASNAAGEATATVELH 73 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEE-E-ec-----CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 67899999999999999999975666554443322 1 11 23799999999999999999999999998888876
Q ss_pred c
Q psy16426 150 G 150 (194)
Q Consensus 150 v 150 (194)
|
T Consensus 74 v 74 (74)
T cd05764 74 I 74 (74)
T ss_pred C
Confidence 4
No 42
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.44 E-value=1.5e-12 Score=81.11 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=58.2
Q ss_pred CCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16426 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149 (194)
Q Consensus 70 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~ 149 (194)
|+.+.|.|.+.|.|.|.+.|+. ++..+............ ...|.|.++..+|.|.|+|.|.|..|...+.+.|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~-~g~~~~~~~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRL-NGVPIEELPPDPRRRVD-----GGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVH 74 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEE-CCEECCCCCCcceEEcc-----CCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence 6789999999999999999998 55544332211111111 24899999999999999999999999999988887
Q ss_pred c
Q psy16426 150 G 150 (194)
Q Consensus 150 v 150 (194)
|
T Consensus 75 V 75 (76)
T cd04978 75 V 75 (76)
T ss_pred E
Confidence 6
No 43
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.44 E-value=5.6e-12 Score=94.63 Aligned_cols=118 Identities=23% Similarity=0.311 Sum_probs=79.3
Q ss_pred CeeeeeCCCcEEEEeeeeccC-----------CceeEEEecCceEE----------------------------------
Q psy16426 17 QLVGAMEGDQMTLECHSEAYP-----------KSINYWTKENGEII---------------------------------- 51 (194)
Q Consensus 17 ~~~~v~~G~~v~L~C~~~g~p-----------~~~v~W~k~~~~l~---------------------------------- 51 (194)
.++.+.+|++|.|.|.+.+.+ .+.|.|++++....
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 557889999999999987643 34899999764321
Q ss_pred -------EeeCC---------eEEeccceeEEeeCCeEEEEEEeec-----cCCCccEEEecCcEEeeCCCceeEEecCC
Q psy16426 52 -------AQVPP---------MIWIQNQLVGAMEGDQMTLECHSEA-----YPKSINYWTKENGEIIAQGSKYEPILLDN 110 (194)
Q Consensus 52 -------v~~~p---------~i~~~~~~~~~~~g~~~~l~C~~~~-----~p~p~v~W~~~~~~~~~~~~~~~~~~~~~ 110 (194)
+.... .+........+.+|+.+.|.|.+.+ .|.|.++|++ ++..+....++.. ..+
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyK-ng~~l~~~~r~~~--~~~ 186 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYK-NGNIVLYTDRIQL--RNN 186 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEE-CCEECCCCCCEEE--eCC
Confidence 00000 0111112234567999999999753 4578999999 6665544444331 111
Q ss_pred ceeEEEEEEEeecCCCCCeEEEEEEEcCCCc
Q psy16426 111 AYKIHMKLTIKAVTKQDFGAYKCVSKNSLGD 141 (194)
Q Consensus 111 ~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~ 141 (194)
...|.|.+++.+|+|.|+|.+......
T Consensus 187 ----~~~L~I~~V~~~DsG~YtC~a~~~~~g 213 (227)
T PHA02826 187 ----NSTLVIKSATHDDSGIYTCNLRFNKNS 213 (227)
T ss_pred ----CCEEEECcCCHHhCEEEEEEEEEeECC
Confidence 248999999999999999999886543
No 44
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.44 E-value=5.5e-12 Score=81.69 Aligned_cols=88 Identities=23% Similarity=0.334 Sum_probs=63.7
Q ss_pred EeccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcC
Q psy16426 59 WIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNS 138 (194)
Q Consensus 59 ~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~ 138 (194)
.+.+....+..|+.+.|.|.+.|.| +.+.|+.+++.......+....... ...++|.|.+++.+|.|.|+|.|.|.
T Consensus 4 ~v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~A~N~ 79 (92)
T cd04977 4 DIVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQND---DVRSTLTIYNANIEDAGIYKCVATDA 79 (92)
T ss_pred EEecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCC---CCEEEEEEecCCcccCEEEEEEEEcC
Confidence 4455667788999999999999986 5899997555544333333222211 12569999999999999999999999
Q ss_pred CCc-eEEEEEEEc
Q psy16426 139 LGD-TDGSIKLYG 150 (194)
Q Consensus 139 ~g~-~~~~~~l~v 150 (194)
.|. ..+++.|.|
T Consensus 80 ~g~~~~~sv~l~~ 92 (92)
T cd04977 80 KGTESEATVNLKI 92 (92)
T ss_pred CCCcceeEEEEEC
Confidence 754 566777653
No 45
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.43 E-value=9.2e-13 Score=79.98 Aligned_cols=65 Identities=31% Similarity=0.402 Sum_probs=52.3
Q ss_pred EEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEc
Q psy16426 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYG 150 (194)
Q Consensus 73 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v 150 (194)
+.|.|.+.|.|.|.++|++ ++..+.... ..+.|.|.++..+|.|.|+|.|.|..|...+++.|.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~k-dg~~l~~~~------------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYK-DGKLISGKH------------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEE-CCEECcccC------------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 3689999999999999999 555443210 1349999999999999999999999998777766654
No 46
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.41 E-value=2.8e-12 Score=80.33 Aligned_cols=75 Identities=20% Similarity=0.296 Sum_probs=56.4
Q ss_pred EEEEEeeccCCCccEEEecCcEEeeCCCceeEE-ecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16426 74 TLECHSEAYPKSINYWTKENGEIIAQGSKYEPI-LLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149 (194)
Q Consensus 74 ~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~ 149 (194)
.|.|.+.|.|.|+++|++ ++..+......... .........++|.|.++...|.|.|+|.|.|..|...+++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~k-ng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFH-EGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEE-CCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 478999999999999999 66666544332111 1111112356899999999999999999999999999888764
No 47
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.41 E-value=3.7e-12 Score=81.25 Aligned_cols=80 Identities=19% Similarity=0.352 Sum_probs=59.2
Q ss_pred CeEEEEEEeeccCCC--ccEEEecCcEEeeCC---CceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEE
Q psy16426 71 DQMTLECHSEAYPKS--INYWTKENGEIIAQG---SKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGS 145 (194)
Q Consensus 71 ~~~~l~C~~~~~p~p--~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~ 145 (194)
+.+.|.|.+.|.|.| .+.|++ ++..+... .++...... ...++|.|.+++..|.|.|+|.|.|..|...++
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~-~g~~i~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~ 76 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSL-DDFPIDLDKPNGHYRRMEVK---ETIGDLVIVNAQLSHAGTYTCTAQTVVDSASAS 76 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEE-CCeEccccCCCCcEEEEEec---ceEeEEEEccCChhhCeEEEEEEecCCCCEEEE
Confidence 358899999999977 468998 55444321 122111111 123589999999999999999999999999999
Q ss_pred EEEEcccCC
Q psy16426 146 IKLYGKKKK 154 (194)
Q Consensus 146 ~~l~v~~~p 154 (194)
+.|.|..+|
T Consensus 77 ~~L~V~~~P 85 (85)
T cd05854 77 ATLVVRGPP 85 (85)
T ss_pred EEEEEECCC
Confidence 999887654
No 48
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.40 E-value=3.8e-12 Score=79.87 Aligned_cols=71 Identities=25% Similarity=0.382 Sum_probs=54.8
Q ss_pred CCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEE
Q psy16426 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGS 145 (194)
Q Consensus 70 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~ 145 (194)
|+++.|.|.+.|.|.|.+.|++ ++.......++...... ..+.|.|.++..+|.|.|+|.|.|..|...+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~-~~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 71 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRL-NWGHVPDSARVSITSEG----GYGTLTIRDVKESDQGAYTCEAINTRGMVFGI 71 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEE-CCeECCCCCCEEEEECC----CEEEEEECCCChHHCEEEEEEEEecCCEEEec
Confidence 6789999999999999999998 44444444344322221 14689999999999999999999999987654
No 49
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.39 E-value=6.4e-12 Score=79.35 Aligned_cols=75 Identities=20% Similarity=0.287 Sum_probs=55.4
Q ss_pred EEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCC---ceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16426 74 TLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDN---AYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149 (194)
Q Consensus 74 ~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~ 149 (194)
.|.|.+.|.|.|.++|++ ++..+............. .....+.|.|.++...|.|.|+|.|.|..|...+.+.+.
T Consensus 2 ~i~~~v~G~P~P~v~W~k-~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYH-NGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEE-CCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 468999999999999999 565554443222111111 122356899999999999999999999999998887764
No 50
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.39 E-value=3.4e-12 Score=79.43 Aligned_cols=74 Identities=22% Similarity=0.384 Sum_probs=54.0
Q ss_pred EEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEc
Q psy16426 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYG 150 (194)
Q Consensus 73 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v 150 (194)
+.|.|.+.|.|.|.+.|++++................. ...|.|.++..+|.|.|.|.|.|..|...+.+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPE----DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecC----CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 36899999999999999995443222211111111111 237899999999999999999999999988888876
No 51
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.39 E-value=3e-12 Score=78.40 Aligned_cols=68 Identities=26% Similarity=0.570 Sum_probs=54.0
Q ss_pred EEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16426 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148 (194)
Q Consensus 73 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l 148 (194)
+.|.|.+.|.|.|.+.|++ ++..+....++. ... .+.|.|.++..+|.|.|+|.|.|..|...+++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k-~g~~~~~~~~~~--~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNK-DGVQVTESGKFH--ISP-----EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEE-CCEECCCCCCEE--ECC-----CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 4689999999999999999 555444433332 121 2489999999999999999999999999888776
No 52
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.38 E-value=4e-12 Score=80.27 Aligned_cols=79 Identities=23% Similarity=0.399 Sum_probs=59.8
Q ss_pred eEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy16426 65 VGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDG 144 (194)
Q Consensus 65 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~ 144 (194)
+....|+.+.|.|.+.+.|.|.+.|++++..+ ....... .. ....+|.|.++..+|.|.|+|.+.|..|...+
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~-~~~~~~~--~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~ 76 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPL-TPTEIGE--SR----KKKWTLSLKNLKPEDSGKYTCHVSNRAGEINA 76 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCC-cCCccce--ec----CceEEEEEccCChhhCEEEEEEEEcCCccEEE
Confidence 34567999999999999999999999944333 2221111 11 11358999999999999999999999999888
Q ss_pred EEEEEc
Q psy16426 145 SIKLYG 150 (194)
Q Consensus 145 ~~~l~v 150 (194)
++.|.|
T Consensus 77 ~~~v~v 82 (82)
T cd05856 77 TYKVDV 82 (82)
T ss_pred EEEEeC
Confidence 887754
No 53
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.38 E-value=2.4e-12 Score=83.06 Aligned_cols=78 Identities=24% Similarity=0.443 Sum_probs=60.2
Q ss_pred CCeEEEEEEeeccCCCccEEEecCcEEee-------CCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCce
Q psy16426 70 GDQMTLECHSEAYPKSINYWTKENGEIIA-------QGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDT 142 (194)
Q Consensus 70 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~ 142 (194)
|+.+.|.|.+.+.|.|.+.|++++..... ...++. ... .+.|.|.++..+|.|.|+|.+.|..|..
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~--v~~-----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 73 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFS--VSQ-----TGDLTITNVQRSDVGYYICQTLNVAGSI 73 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEE--ECC-----CCeEEEeeCChhhCEEEEEEEEcCCCce
Confidence 67899999999999999999985443211 111221 111 2479999999999999999999999999
Q ss_pred EEEEEEEcccCC
Q psy16426 143 DGSIKLYGKKKK 154 (194)
Q Consensus 143 ~~~~~l~v~~~p 154 (194)
.+.+.|.|....
T Consensus 74 ~~~~~l~V~~~~ 85 (90)
T cd05726 74 LTKAYLEVTDVI 85 (90)
T ss_pred EEEEEEEEeecc
Confidence 999999987643
No 54
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.38 E-value=1.8e-12 Score=79.89 Aligned_cols=70 Identities=24% Similarity=0.452 Sum_probs=54.2
Q ss_pred EEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEc
Q psy16426 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYG 150 (194)
Q Consensus 73 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v 150 (194)
+.|.|.+.|.|.|.+.|++++..+. .. ... .... ..+|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~-~~-~~~-~~~~-----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLS-PN-RTK-KLNN-----NKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCC-CC-cee-EEcC-----CCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4689999999999999999544332 21 111 1111 348999999999999999999999999998888876
No 55
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.38 E-value=5.9e-12 Score=81.21 Aligned_cols=81 Identities=23% Similarity=0.292 Sum_probs=57.2
Q ss_pred CCeEEEEEEeeccCCCccEEEecC---cEEeeCCCceeE-EecCCce----eEEEEEEEeecCCCCCeEEEEEEEcCCCc
Q psy16426 70 GDQMTLECHSEAYPKSINYWTKEN---GEIIAQGSKYEP-ILLDNAY----KIHMKLTIKAVTKQDFGAYKCVSKNSLGD 141 (194)
Q Consensus 70 g~~~~l~C~~~~~p~p~v~W~~~~---~~~~~~~~~~~~-~~~~~~~----~~~~~L~i~~~~~~d~g~y~C~a~n~~g~ 141 (194)
|+++.|.|.+.+.|.|.+.|++.+ +........... ....... ...+.|.|.+++.+|.|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 678999999999999999999732 222211111110 1111100 11358999999999999999999999999
Q ss_pred eEEEEEEEc
Q psy16426 142 TDGSIKLYG 150 (194)
Q Consensus 142 ~~~~~~l~v 150 (194)
..++..|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 988888876
No 56
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.38 E-value=7.4e-12 Score=78.35 Aligned_cols=72 Identities=25% Similarity=0.558 Sum_probs=53.0
Q ss_pred EEEEEEeeccCCCccEEEecCcEEeeCCC-ceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceE--EEEEEE
Q psy16426 73 MTLECHSEAYPKSINYWTKENGEIIAQGS-KYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTD--GSIKLY 149 (194)
Q Consensus 73 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~--~~~~l~ 149 (194)
+.|.|.+.|.|.|.+.|++ ++..+.... .+. . ... ...|.|.++..+|.|.|.|.|.|..|... +.+.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k-~g~~l~~~~~~~~-~-~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~ 73 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFR-DGTPLSDGQGNYS-V-SSK----ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS 73 (77)
T ss_pred CEEEEEeeecCCCcEEEEE-CCEECCCCCccEE-E-eCC----CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence 4789999999999999999 555443322 222 1 111 24899999999999999999999999864 456665
Q ss_pred cc
Q psy16426 150 GK 151 (194)
Q Consensus 150 v~ 151 (194)
|.
T Consensus 74 v~ 75 (77)
T cd05760 74 II 75 (77)
T ss_pred Ee
Confidence 54
No 57
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.37 E-value=5.6e-12 Score=80.40 Aligned_cols=80 Identities=21% Similarity=0.366 Sum_probs=58.3
Q ss_pred CeEEEEEEeeccCCC--ccEEEecCcEEeeCCC---ceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEE
Q psy16426 71 DQMTLECHSEAYPKS--INYWTKENGEIIAQGS---KYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGS 145 (194)
Q Consensus 71 ~~~~l~C~~~~~p~p--~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~ 145 (194)
+.+.|.|.+.+.|.| .+.|++ ++..+.... .+...... ...++|.|.+++..|.|.|+|.|.|..|...++
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~-~g~~i~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 76 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSF-NGVPIDFDKDGGHYRRVGGK---DSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSAS 76 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEE-CCeEeeccCCCccEEEEecc---cccceEEEccCCHHhCeeeEEEEecCCCcEEEE
Confidence 368899999999877 457998 555443221 11111111 113589999999999999999999999999999
Q ss_pred EEEEcccCC
Q psy16426 146 IKLYGKKKK 154 (194)
Q Consensus 146 ~~l~v~~~p 154 (194)
..|.|..+|
T Consensus 77 ~~l~V~~pP 85 (85)
T cd04970 77 ADLIVRGPP 85 (85)
T ss_pred EEEEEECCC
Confidence 999887654
No 58
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.36 E-value=3e-11 Score=78.55 Aligned_cols=86 Identities=27% Similarity=0.414 Sum_probs=58.3
Q ss_pred CeEEeccceeEEeeC---CeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecC-CCCCeEE
Q psy16426 56 PMIWIQNQLVGAMEG---DQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVT-KQDFGAY 131 (194)
Q Consensus 56 p~i~~~~~~~~~~~g---~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~g~y 131 (194)
|.+...+....+.+| +.+.|.|.+.|.|.|.++|++ ++..+........... .+.|.|.++. ..|.|.|
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~-~g~~l~~~~~~~~~~~------~g~L~I~~~~~~~D~G~Y 74 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKM-NGTEIKFAPESRYTLV------AGNLVINNPQKARDAGSY 74 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEE-CCEECccCCCceEEEE------CCeEEEccCCccCcCEEE
Confidence 344445555544444 689999999999999999999 5554432221111122 2378887765 5999999
Q ss_pred EEEEEcCCCceEE-EEEE
Q psy16426 132 KCVSKNSLGDTDG-SIKL 148 (194)
Q Consensus 132 ~C~a~n~~g~~~~-~~~l 148 (194)
.|.|.|..|...+ .+.|
T Consensus 75 ~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 75 QCLAINRCGTVVSREANL 92 (94)
T ss_pred EEEEEcCcCcEEEEEEEE
Confidence 9999999998764 3444
No 59
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.36 E-value=1.6e-11 Score=79.29 Aligned_cols=86 Identities=23% Similarity=0.436 Sum_probs=63.2
Q ss_pred CeEEe--ccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEE
Q psy16426 56 PMIWI--QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKC 133 (194)
Q Consensus 56 p~i~~--~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C 133 (194)
|.|.. ...++.+.+|+++.|.|.+.|. .|.+.|++ ++..+... ++. ...+ ..+|.|.++..+|.|.|.|
T Consensus 2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~k-ng~~l~~~-~~~-~~~~-----~~~L~I~~v~~~D~G~Y~C 72 (91)
T cd05740 2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVN-NGSLLVPP-RLQ-LSND-----NRTLTFNNVTRSDTGHYQC 72 (91)
T ss_pred CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEE-CCEECCCC-CEE-EeCC-----CCEEEECcCChhhCEEEEE
Confidence 45542 3345678899999999999999 99999999 45443322 222 1112 2389999999999999999
Q ss_pred EEEcCCCceEE-EEEEEc
Q psy16426 134 VSKNSLGDTDG-SIKLYG 150 (194)
Q Consensus 134 ~a~n~~g~~~~-~~~l~v 150 (194)
.|.|..|...+ .+.|.|
T Consensus 73 ~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 73 EASNEVSNMTSDPYILNV 90 (91)
T ss_pred EEEcCCCCEEeeeEEEEe
Confidence 99999998654 566765
No 60
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.35 E-value=1.8e-11 Score=79.56 Aligned_cols=82 Identities=26% Similarity=0.449 Sum_probs=56.7
Q ss_pred CeEEeccceeEEe---eCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecC-CCCCeEE
Q psy16426 56 PMIWIQNQLVGAM---EGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVT-KQDFGAY 131 (194)
Q Consensus 56 p~i~~~~~~~~~~---~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~g~y 131 (194)
|.+...+..+.+. +|+.+.|.|.+.|.|.|.++|++ ++..+...........+ ++|.|.++. ..|.|.|
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k-~g~~l~~~~~~~~~~~~------g~L~i~~~~~~~D~G~Y 74 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLR-NGTEIDTESDYRYSLID------GNLIISNPSEVKDSGRY 74 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEE-CCeECccCCCceEEeeC------CeEEEccCCccCcCEEE
Confidence 3344444444332 46899999999999999999999 55544332222222222 378888874 6999999
Q ss_pred EEEEEcCCCceEE
Q psy16426 132 KCVSKNSLGDTDG 144 (194)
Q Consensus 132 ~C~a~n~~g~~~~ 144 (194)
+|.|.|..|...+
T Consensus 75 ~C~A~N~~G~~~S 87 (94)
T cd05848 75 QCLATNSIGSILS 87 (94)
T ss_pred EEEEEcCCCeEEe
Confidence 9999999998754
No 61
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.35 E-value=4.3e-12 Score=80.02 Aligned_cols=77 Identities=23% Similarity=0.382 Sum_probs=55.9
Q ss_pred CCeEEEEEEeeccCCCccEEEecCc--E-EeeCCCceeE-EecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEE
Q psy16426 70 GDQMTLECHSEAYPKSINYWTKENG--E-IIAQGSKYEP-ILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGS 145 (194)
Q Consensus 70 g~~~~l~C~~~~~p~p~v~W~~~~~--~-~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~ 145 (194)
|+.+.|.|.+.|.|.|.+.|+++.. . .......... ... ...++|.|.++..+|.|.|+|.+.|..|...+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 76 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVV----TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRAN 76 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEE----ccccEEEEccCCcccCEEEEEEEecCCceEEEE
Confidence 6789999999999999999998421 1 1111101000 000 113589999999999999999999999999998
Q ss_pred EEEEc
Q psy16426 146 IKLYG 150 (194)
Q Consensus 146 ~~l~v 150 (194)
+.|.|
T Consensus 77 ~~l~v 81 (81)
T cd05765 77 FPLSV 81 (81)
T ss_pred EEEeC
Confidence 88865
No 62
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.35 E-value=3.3e-11 Score=78.54 Aligned_cols=93 Identities=23% Similarity=0.394 Sum_probs=68.2
Q ss_pred CCeEEeccceeEEeeCCeEEEEEEeeccCCCc-cEEEecCcEEeeC-CCceeEEecCCceeEEEEEEEeecCCCC-CeEE
Q psy16426 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSI-NYWTKENGEIIAQ-GSKYEPILLDNAYKIHMKLTIKAVTKQD-FGAY 131 (194)
Q Consensus 55 ~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p~-v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d-~g~y 131 (194)
||.| .......+.+|+.+.|.|.+.+.|+|. +.|...+..+... ..++.+..........+.|.|.++...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 6766 466778889999999999998888775 5687743322222 2344433333233457899999998766 6899
Q ss_pred EEEEEcCCCceEEEEEE
Q psy16426 132 KCVSKNSLGDTDGSIKL 148 (194)
Q Consensus 132 ~C~a~n~~g~~~~~~~l 148 (194)
.|.|.|.+|++...+.|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999999988876
No 63
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.34 E-value=1e-11 Score=76.47 Aligned_cols=69 Identities=29% Similarity=0.432 Sum_probs=53.8
Q ss_pred EEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEc
Q psy16426 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYG 150 (194)
Q Consensus 73 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v 150 (194)
+.|.|.+.|.|.|.+.|++ ++..+....+. ... ..+|.|.++..+|+|.|+|.|.|..|.....+.+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k-~g~~l~~~~~~---~~~-----~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYK-NGKLISEKNRT---KKS-----GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEE-CCEECCCCCEE---EcC-----CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 3689999999999999999 56555443222 112 248999999999999999999999998777766654
No 64
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.34 E-value=1.2e-11 Score=75.70 Aligned_cols=69 Identities=32% Similarity=0.575 Sum_probs=53.6
Q ss_pred EEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEc
Q psy16426 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYG 150 (194)
Q Consensus 73 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v 150 (194)
+.|.|.+.|.|.|.+.|+++++.+ . ..++.. .. ...|.|.++..+|.|.|+|.|.|..|...+.+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~-~-~~~~~~--~~-----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGEL-P-KGRAEI--LD-----DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccC-C-CCcEEE--ee-----CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 468999999999999999954332 2 223321 12 238999999999999999999999999988888764
No 65
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.33 E-value=1.4e-11 Score=79.42 Aligned_cols=81 Identities=23% Similarity=0.345 Sum_probs=56.5
Q ss_pred CCeEEEEEEeeccCCCccEEEecC---cEEe-eCCCce-eEEe--cCCc-eeEEEEEEEeecCCCCCeEEEEEEEcCCCc
Q psy16426 70 GDQMTLECHSEAYPKSINYWTKEN---GEII-AQGSKY-EPIL--LDNA-YKIHMKLTIKAVTKQDFGAYKCVSKNSLGD 141 (194)
Q Consensus 70 g~~~~l~C~~~~~p~p~v~W~~~~---~~~~-~~~~~~-~~~~--~~~~-~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~ 141 (194)
|+.+.|.|.+.|.|.|.++|++++ +... ...... .... .... ......|.|.+++.+|.|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 578999999999999999999842 1111 111111 1010 0010 111347999999999999999999999999
Q ss_pred eEEEEEEEc
Q psy16426 142 TDGSIKLYG 150 (194)
Q Consensus 142 ~~~~~~l~v 150 (194)
..++..|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 998888876
No 66
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.33 E-value=8.2e-12 Score=79.33 Aligned_cols=80 Identities=19% Similarity=0.390 Sum_probs=58.6
Q ss_pred CeEEEEEEeeccC--CCccEEEecCcEEeeC---CCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEE
Q psy16426 71 DQMTLECHSEAYP--KSINYWTKENGEIIAQ---GSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGS 145 (194)
Q Consensus 71 ~~~~l~C~~~~~p--~p~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~ 145 (194)
+++.|.|.+.+.+ ++.+.|++ ++..+.. ..++. ..++ ....+.|.|.+++..|.|+|+|.|.|..+...++
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~-dg~~i~~~~~~~~~~--~~~~-~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~ 76 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSF-NGHLIDFQKDGDHFE--RVGG-QDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAA 76 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEE-CCEECcccCCCccEE--Eecc-CCCCCcEEEecCCHHHCEEEEEEEEcccCceEEE
Confidence 3578999987744 77788999 6655542 11222 1110 0113489999999999999999999999999999
Q ss_pred EEEEcccCC
Q psy16426 146 IKLYGKKKK 154 (194)
Q Consensus 146 ~~l~v~~~p 154 (194)
..|.|..+|
T Consensus 77 a~L~V~~pP 85 (85)
T cd05853 77 ADLIVRGPP 85 (85)
T ss_pred EEEEEecCC
Confidence 999887665
No 67
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.32 E-value=3.4e-11 Score=76.75 Aligned_cols=80 Identities=26% Similarity=0.516 Sum_probs=59.3
Q ss_pred cceeEEeeCCeEEEEEEe-eccCCCccEEEecCcEEeeC-CCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCC
Q psy16426 62 NQLVGAMEGDQMTLECHS-EAYPKSINYWTKENGEIIAQ-GSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139 (194)
Q Consensus 62 ~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~ 139 (194)
+....+.+|+.+.|.|.+ .+.|.|.+.|++ ++..... ..++. ... .++|.|.++..+|.|.|+|.+.|..
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k-~g~~~~~~~~~~~--~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~ 74 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRK-DGQPLNLDNERVR--IVD-----DGNLLIAEARKSDEGTYKCVATNMV 74 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEE-CCEECCCCCCCEE--Ecc-----CCEEEEeECCcccCEEEEEEEEecc
Confidence 345667889999999998 688899999999 4544333 22222 111 2489999999999999999999999
Q ss_pred CceEE-EEEEE
Q psy16426 140 GDTDG-SIKLY 149 (194)
Q Consensus 140 g~~~~-~~~l~ 149 (194)
|...+ .+.|.
T Consensus 75 G~~~s~~~~l~ 85 (86)
T cd05724 75 GERESAAARLS 85 (86)
T ss_pred CceeeeeEEEE
Confidence 98653 44443
No 68
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.32 E-value=4.1e-11 Score=78.03 Aligned_cols=84 Identities=30% Similarity=0.446 Sum_probs=58.4
Q ss_pred ccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeec-----CCCCCeEEEEEE
Q psy16426 61 QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAV-----TKQDFGAYKCVS 135 (194)
Q Consensus 61 ~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-----~~~d~g~y~C~a 135 (194)
.+....+.+|+++.|.|.+.+.|.|.+.|++ ++..+............+ ++|.|.++ ...|.|.|+|.|
T Consensus 5 ~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k-~g~~l~~~~~~~~~~~~~-----~~l~i~~v~~~~~~~~D~G~Y~C~a 78 (95)
T cd05722 5 EPSDIVAVRGGPVVLNCSAEGEPPPKIEWKK-DGVLLNLVSDERRQQLPN-----GSLLITSVVHSKHNKPDEGFYQCVA 78 (95)
T ss_pred CCCCeEEcCCCCEEEeeecccCCCCEEEEEE-CCeECccccCcceEEccC-----CeEEEeeeeccCCCCCcCEEEEEEE
Confidence 4455667789999999999999999999999 555554332211111111 24555554 588999999999
Q ss_pred EcC-CCceE-EEEEEEc
Q psy16426 136 KNS-LGDTD-GSIKLYG 150 (194)
Q Consensus 136 ~n~-~g~~~-~~~~l~v 150 (194)
.|. .|... ..+.|.|
T Consensus 79 ~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 79 QNDSLGSIVSRTARLTV 95 (95)
T ss_pred ECCccCcEEEeeeEEeC
Confidence 999 99874 4566543
No 69
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.32 E-value=1.8e-11 Score=76.30 Aligned_cols=73 Identities=33% Similarity=0.527 Sum_probs=55.8
Q ss_pred EEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEcc
Q psy16426 74 TLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGK 151 (194)
Q Consensus 74 ~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v~ 151 (194)
.|.|.+.|.|.|.+.|++ ++..+............+ ...|.|.++...|.|.|+|.+.|..|....++.|.|.
T Consensus 2 ~L~C~v~g~P~p~v~W~k-~~~~l~~~~~~~~~~~~~----~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 2 SLRCHAEGIPLPRLTWLK-NGMDITPKLSKQLTLIAN----GSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred EeEeEeeecCCCEEEEEE-CCEECCCCCCccEEEeCC----CCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 689999999999999998 454443322221122222 2379999999999999999999999999999999874
No 70
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.32 E-value=2.5e-11 Score=76.34 Aligned_cols=78 Identities=22% Similarity=0.387 Sum_probs=59.6
Q ss_pred ceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCce
Q psy16426 63 QLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDT 142 (194)
Q Consensus 63 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~ 142 (194)
....+.+|+.+.|.|.+.+. .+.++|++ ++..+....++. .. ..+|.|.++..+|+|.|+|.+.|..|..
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k-~g~~l~~~~~~~--~~------~~~L~I~~~~~~DsG~Y~C~a~n~~g~~ 71 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTK-DGVQLGENNRTR--IT------GEEVQIKDAVPRDSGLYACVTSSPSGSD 71 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEee-CCcCCCCCceEE--Ee------CCEEEECCCChhhCEEEEEEEeCCCCcc
Confidence 34567889999999999886 56899999 555544433332 11 1379999999999999999999999988
Q ss_pred EEEEEEEc
Q psy16426 143 DGSIKLYG 150 (194)
Q Consensus 143 ~~~~~l~v 150 (194)
...+.|.|
T Consensus 72 ~~~~~v~V 79 (79)
T cd04973 72 TTYFSVNV 79 (79)
T ss_pred cEEEEEeC
Confidence 77776654
No 71
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.31 E-value=2.3e-11 Score=74.40 Aligned_cols=68 Identities=22% Similarity=0.475 Sum_probs=51.2
Q ss_pred CCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16426 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148 (194)
Q Consensus 70 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l 148 (194)
|+.+.|.|.+.|.|.|.+.|++ ++..+.....+. .. ...|.|.++. |.|.|+|.|.|..|...++..|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k-~g~~l~~~~~~~---~~-----~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMK-GGEELTKEDEMP---VG-----RNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEE-CCEECCCcccee---cC-----ccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 5789999999999999999999 444433322211 11 2378888874 7899999999999988877665
No 72
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.31 E-value=2.2e-11 Score=79.07 Aligned_cols=81 Identities=22% Similarity=0.226 Sum_probs=60.2
Q ss_pred eeEEeeCCeEEEEEEeec-----cCCCccEEEecCcEEeeCC-CceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEc
Q psy16426 64 LVGAMEGDQMTLECHSEA-----YPKSINYWTKENGEIIAQG-SKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKN 137 (194)
Q Consensus 64 ~~~~~~g~~~~l~C~~~~-----~p~p~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n 137 (194)
...+.+|+.+.|.|.+.+ .|.+.+.|++++....... ..... ... ...|.|.++..+|+|.|+|.+.|
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~-~~~-----~~~L~I~~~~~~DsG~Y~C~~~N 81 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRM-HQQ-----KDLLWFLPAALEDSGLYTCVVRN 81 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCccccccccee-eec-----CCeEEEccCCcccCeEEEEEEcC
Confidence 455678999999999988 6788999999543321111 11111 111 24899999999999999999999
Q ss_pred CCCceEEEEEEEc
Q psy16426 138 SLGDTDGSIKLYG 150 (194)
Q Consensus 138 ~~g~~~~~~~l~v 150 (194)
..|.....+.|.|
T Consensus 82 ~~g~~~~~~~L~v 94 (94)
T cd05756 82 STYCMKVSISLTV 94 (94)
T ss_pred CCccEEEEEEEEC
Confidence 9999998888765
No 73
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.31 E-value=2.3e-11 Score=77.39 Aligned_cols=81 Identities=23% Similarity=0.258 Sum_probs=56.4
Q ss_pred CCeEEEEEEeecc--CCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy16426 70 GDQMTLECHSEAY--PKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIK 147 (194)
Q Consensus 70 g~~~~l~C~~~~~--p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~ 147 (194)
|+.+.|.|.+.+. |.+.+.|..++......................+.|.|.+++.+|.|.|+|.+.|..|...++..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 6789999999998 78889998744322111000000011111234579999999999999999999999998888777
Q ss_pred EEc
Q psy16426 148 LYG 150 (194)
Q Consensus 148 l~v 150 (194)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 654
No 74
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.31 E-value=1.1e-11 Score=76.21 Aligned_cols=70 Identities=30% Similarity=0.575 Sum_probs=53.6
Q ss_pred EEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEc
Q psy16426 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYG 150 (194)
Q Consensus 73 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v 150 (194)
+.|.|.+.|.|.|.+.|++++.. .... ... ... ....|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~-~~~~-~~~--~~~----~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGE-LPAD-RTK--FEN----FNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeE-CCCC-cee--Eec----CCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 46899999999999999995433 2221 111 111 1348999999999999999999999999988888866
No 75
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.30 E-value=2.3e-11 Score=75.48 Aligned_cols=72 Identities=26% Similarity=0.367 Sum_probs=51.9
Q ss_pred EEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCce-EEEEEEEc
Q psy16426 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDT-DGSIKLYG 150 (194)
Q Consensus 73 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~-~~~~~l~v 150 (194)
+.|.|.+.|.|.|.++|++ ++............... .+.|.|.++..+|.|.|+|.|.|..|.. .....|+|
T Consensus 1 a~l~C~~~G~P~p~v~W~k-~~~~~~~~~~~~~~~~~-----~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFK-DFLPVDTTSNGRIKQLR-----SGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEE-CCEECccCCCCCEEEcC-----CcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 3689999999999999999 44443321111112222 2379999999999999999999999985 44566655
No 76
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.30 E-value=1.1e-11 Score=75.98 Aligned_cols=66 Identities=26% Similarity=0.429 Sum_probs=51.2
Q ss_pred EEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16426 74 TLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149 (194)
Q Consensus 74 ~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~ 149 (194)
.|.|.+.|.|.|.+.|++ ++..+.....+ .. ...|.|.++..+|.|.|+|.|.|..|.......+.
T Consensus 2 ~~~c~v~G~P~P~v~W~k-~g~~l~~~~~~----~~-----~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~ 67 (70)
T cd05864 2 KIPVKYYGYPPPEVKWYK-NGQLIVLNHTF----KR-----GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQ 67 (70)
T ss_pred EEEeEEEEeCCCEEEEEE-CCEECCCCCEE----cc-----CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEE
Confidence 589999999999999999 55554433211 11 23799999999999999999999999777655544
No 77
>KOG4222|consensus
Probab=99.29 E-value=5.9e-12 Score=109.15 Aligned_cols=143 Identities=19% Similarity=0.336 Sum_probs=109.3
Q ss_pred ccccccCCeEEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCceEE-------------------------------
Q psy16426 3 KQGQNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEII------------------------------- 51 (194)
Q Consensus 3 ~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~l~------------------------------- 51 (194)
.+.|.++|.++..+.+..+.+|.++.+.|.+.|.|.|.|.|-+++..+.
T Consensus 219 ~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~ 298 (1281)
T KOG4222|consen 219 RLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAE 298 (1281)
T ss_pred eeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeecc
Confidence 4668899999999999999999999999999999999999999765543
Q ss_pred -------------EeeCCeEEeccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEE
Q psy16426 52 -------------AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKL 118 (194)
Q Consensus 52 -------------v~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 118 (194)
|..+|.+...+....+..|..+.|.|.+.|+|+|.+.|...+...+.............++....+|
T Consensus 299 n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L 378 (1281)
T KOG4222|consen 299 NLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTL 378 (1281)
T ss_pred ccccccccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCc
Confidence 6667766666666667889999999999999999999998444333221000001111223334599
Q ss_pred EEeecCCCCCeEEEEEEEcCCCceEEE
Q psy16426 119 TIKAVTKQDFGAYKCVSKNSLGDTDGS 145 (194)
Q Consensus 119 ~i~~~~~~d~g~y~C~a~n~~g~~~~~ 145 (194)
+|.+++..|.|.|.|...+..++....
T Consensus 379 ~it~v~~~d~g~Yvcq~~~~~~ss~~~ 405 (1281)
T KOG4222|consen 379 TITNVRQSDEGYYVCQTQTSAGSSLTK 405 (1281)
T ss_pred ccccccccccceEeecccccccccccc
Confidence 999999999999999988887776543
No 78
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.27 E-value=2.1e-10 Score=90.93 Aligned_cols=132 Identities=16% Similarity=0.248 Sum_probs=84.7
Q ss_pred CeEEEcCCeeeeeCCCcEEEEeee-----eccCCceeEEEecCc------------eEE---------------------
Q psy16426 10 PMIWIQNQLVGAMEGDQMTLECHS-----EAYPKSINYWTKENG------------EII--------------------- 51 (194)
Q Consensus 10 P~~~~~~~~~~v~~G~~v~L~C~~-----~g~p~~~v~W~k~~~------------~l~--------------------- 51 (194)
|.+...+.+..+.+|+++.|.|.. .+.+.+.+.|++++. .|.
T Consensus 122 ~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g 201 (326)
T PHA02785 122 SNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYG 201 (326)
T ss_pred CccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCccCCcceEecCCCeEEEeecChhhCeEEEEEEEeccC
Confidence 434434455667899999999972 356888999988541 111
Q ss_pred -------------Ee---eCCeEEeccceeEEeeCCeEEEEEEeeccCC---CccEEEecCcEEeeCCC---ceeEEecC
Q psy16426 52 -------------AQ---VPPMIWIQNQLVGAMEGDQMTLECHSEAYPK---SINYWTKENGEIIAQGS---KYEPILLD 109 (194)
Q Consensus 52 -------------v~---~~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~---p~v~W~~~~~~~~~~~~---~~~~~~~~ 109 (194)
|. .+|.+ ..+....+..|..+.|.|.+.+.|. +.++|++ ++..+.... ........
T Consensus 202 ~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~k-ng~~i~~~~~~~~~~~~~~~ 279 (326)
T PHA02785 202 DKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWIS-NGMYYEEDDEDGDGRISVAN 279 (326)
T ss_pred CEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEE-CCEECCCcCCCCceeEEEec
Confidence 00 12222 2234455667999999999998875 4788999 555443211 11111111
Q ss_pred ------CceeEEEEEEEeecCCCCCeEEEEEEEcCCCceE
Q psy16426 110 ------NAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTD 143 (194)
Q Consensus 110 ------~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~ 143 (194)
......+.|.|.++..+|.|.|+|.|.|..|...
T Consensus 280 ~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 280 KIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred CccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 1112356899999999999999999999885443
No 79
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.27 E-value=1.4e-10 Score=73.75 Aligned_cols=81 Identities=20% Similarity=0.259 Sum_probs=56.0
Q ss_pred CCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCC--ceEEEEE
Q psy16426 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG--DTDGSIK 147 (194)
Q Consensus 70 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g--~~~~~~~ 147 (194)
|+.+.|.|.+.+.|.+.+.|+.++........... ..........++|.|.+++.+|+|.|.|.+.|..+ ....++.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVE-EVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEE-EEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 67899999999998899999974432111000000 11111223467999999999999999999999776 5666777
Q ss_pred EEcc
Q psy16426 148 LYGK 151 (194)
Q Consensus 148 l~v~ 151 (194)
|.|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 7764
No 80
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.25 E-value=2.6e-10 Score=72.27 Aligned_cols=82 Identities=21% Similarity=0.414 Sum_probs=60.7
Q ss_pred eEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy16426 65 VGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDG 144 (194)
Q Consensus 65 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~ 144 (194)
+.+..|+.+.|.|.+.+.|.+.+.|++ ++.............. ......|.|.++..+|.|.|.|.+.|..|....
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k-~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~ 79 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLK-DGKPFKKEHRIGGYKV---RKKKWTLILESVVPSDSGKYTCIVENKYGSINH 79 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEE-CCEECcccCceeEEEc---cCcEEEEEEeECCcccCEEEEEEEEECCceEEE
Confidence 445679999999999999999999999 4444332222211111 112357999999999999999999999999888
Q ss_pred EEEEEc
Q psy16426 145 SIKLYG 150 (194)
Q Consensus 145 ~~~l~v 150 (194)
++.|.|
T Consensus 80 ~~~l~v 85 (85)
T cd05729 80 TYKVDV 85 (85)
T ss_pred EEEEeC
Confidence 887754
No 81
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.25 E-value=2.2e-10 Score=74.29 Aligned_cols=84 Identities=25% Similarity=0.374 Sum_probs=56.6
Q ss_pred CeEEeccceeEEee---CCeEEEEEEeeccCCCccEEEecCcEEeeC-CCceeEEecCCceeEEEEEEEeecC-CCCCeE
Q psy16426 56 PMIWIQNQLVGAME---GDQMTLECHSEAYPKSINYWTKENGEIIAQ-GSKYEPILLDNAYKIHMKLTIKAVT-KQDFGA 130 (194)
Q Consensus 56 p~i~~~~~~~~~~~---g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~g~ 130 (194)
|.+...+....+.+ +..+.|.|.+.|.|.|.+.|++ ++..+.. ..++ ... .+.|.|.++. .+|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k-~~~~i~~~~~~~--~~~------~g~L~I~~~~~~~D~G~ 72 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRK-NNLDIDLTNDRY--SMV------GGNLVINNPDKYKDAGR 72 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEE-CCEEccCCCCeE--EEE------CCEEEECcCCcCCCCEE
Confidence 34444444433333 4479999999999999999999 4444322 2222 121 2378898875 689999
Q ss_pred EEEEEEcCCCceEE-EEEE
Q psy16426 131 YKCVSKNSLGDTDG-SIKL 148 (194)
Q Consensus 131 y~C~a~n~~g~~~~-~~~l 148 (194)
|.|.|.|..|...+ .+.|
T Consensus 73 Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 73 YVCIVSNIYGKVRSREATL 91 (93)
T ss_pred EEEEEEeCcceEEEccEEE
Confidence 99999999998754 3444
No 82
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.23 E-value=4e-11 Score=75.35 Aligned_cols=71 Identities=30% Similarity=0.477 Sum_probs=50.7
Q ss_pred EEEEEEeeccCCCccEEEecCcEEee-------CCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceE-E
Q psy16426 73 MTLECHSEAYPKSINYWTKENGEIIA-------QGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTD-G 144 (194)
Q Consensus 73 ~~l~C~~~~~p~p~v~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~-~ 144 (194)
+.|.|.+.|.|.|.+.|++.++.... ...++. . ...++|.|.++..+|.|.|.|.|.|..|... .
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~--~-----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~ 73 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQ--L-----LSNGSLLIKHVLEEDSGYYLCKVSNDVGADASK 73 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEE--E-----ecCCeEEECcCCcccCEEEEEEEEeCCCCCCce
Confidence 46899999999999999985443211 111111 1 1135899999999999999999999999873 4
Q ss_pred EEEEEc
Q psy16426 145 SIKLYG 150 (194)
Q Consensus 145 ~~~l~v 150 (194)
.+.|.|
T Consensus 74 ~~~l~~ 79 (79)
T cd05734 74 SMVLTV 79 (79)
T ss_pred EEEEeC
Confidence 555543
No 83
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.22 E-value=9.5e-11 Score=72.69 Aligned_cols=73 Identities=29% Similarity=0.515 Sum_probs=52.1
Q ss_pred EEEEEEeec-cCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy16426 73 MTLECHSEA-YPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIK 147 (194)
Q Consensus 73 ~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~ 147 (194)
+.|.|.+.+ .|.|.+.|++ ++..+............. ....+.|.|.++..+|.|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k-~g~~l~~~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFK-DGKELNRKNKPRNIKIRN-KKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEc-CCeeccccCCcceEEEEe-cCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 368999999 8999999999 555444332221100100 112468999999999999999999999998876653
No 84
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.22 E-value=9.9e-11 Score=73.84 Aligned_cols=71 Identities=14% Similarity=0.311 Sum_probs=53.3
Q ss_pred ccceeEEeeCCeEEEEEEeeccCCC-ccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCC
Q psy16426 61 QNQLVGAMEGDQMTLECHSEAYPKS-INYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139 (194)
Q Consensus 61 ~~~~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~ 139 (194)
.+..+.+..|+.+.|.|.+.|.|.| .+.|++ ++..+... .. .. .+.|.|..+. |.|.|.|.|.|.+
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k-~g~~l~~~--~~---~~-----~s~L~i~~~~--d~g~Y~C~A~N~~ 70 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQ-GGSPLGDP--PA---PS-----PSVLNVPGLN--ETSKFSCEAHNAK 70 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCeEEEEEE-CCEECCCC--CC---CC-----CCEEEEcccc--CCeEEEEEEEecc
Confidence 3456778899999999999999999 799999 55544321 10 01 2478888774 7899999999999
Q ss_pred CceEE
Q psy16426 140 GDTDG 144 (194)
Q Consensus 140 g~~~~ 144 (194)
|...+
T Consensus 71 G~~~s 75 (81)
T cd05749 71 GVTTS 75 (81)
T ss_pred CcEEe
Confidence 97654
No 85
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.20 E-value=3.3e-10 Score=73.13 Aligned_cols=68 Identities=24% Similarity=0.449 Sum_probs=49.0
Q ss_pred CCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecC-CCCCeEEEEEEEcCCCceEE
Q psy16426 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVT-KQDFGAYKCVSKNSLGDTDG 144 (194)
Q Consensus 70 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~g~y~C~a~n~~g~~~~ 144 (194)
+..+.|.|.+.|.|.|.++|++ ++..+........... ...|.|.++. .+|.|.|+|.|.|..|...+
T Consensus 19 ~~~~~l~C~~~g~p~p~i~W~k-~~~~l~~~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 19 EGKVSLNCRARGSPPPTYRWLM-NGTEIDDEPDSRYSLV------GGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCEEEEEEeeeEcCCCEEEEEE-CCEECCCCCCCCEEEE------CCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 4579999999999999999999 5554422211111111 2378888776 48999999999999997654
No 86
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.20 E-value=1.8e-10 Score=72.14 Aligned_cols=70 Identities=21% Similarity=0.498 Sum_probs=53.8
Q ss_pred CeEEeccceeEEeeCCeEEEEEEeeccCC-CccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEE
Q psy16426 56 PMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCV 134 (194)
Q Consensus 56 p~i~~~~~~~~~~~g~~~~l~C~~~~~p~-p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~ 134 (194)
|.+.+.+....+.+|+++.|.|.+.+.|. +.+.|++ ++..+.. + ...|.|.++ .+|+|.|+|.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~k-ng~~l~~---------~-----~~~l~i~~~-~~dsG~Y~C~ 64 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYH-NGKLLET---------T-----TNSYRIRAA-NNDSGEYRCQ 64 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEE-CCEEeec---------c-----CCeEEEeec-ccCCEEeEEE
Confidence 45667777788899999999999998775 4688999 5544311 1 237889999 9999999999
Q ss_pred EEcCCCc
Q psy16426 135 SKNSLGD 141 (194)
Q Consensus 135 a~n~~g~ 141 (194)
+.|...+
T Consensus 65 a~~~~~S 71 (78)
T cd05752 65 TQGSSLS 71 (78)
T ss_pred CCCCcCC
Confidence 9886433
No 87
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.18 E-value=1.6e-10 Score=73.64 Aligned_cols=78 Identities=23% Similarity=0.458 Sum_probs=59.7
Q ss_pred ccceeEEeeCCeEEEEEEeec-cCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCC
Q psy16426 61 QNQLVGAMEGDQMTLECHSEA-YPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139 (194)
Q Consensus 61 ~~~~~~~~~g~~~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~ 139 (194)
.+....+.+|+.+.|.|.+.+ .|.+.+.|++++..+ .. +. .. ..+.|.|.++..+|.|.|+|.+.|..
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~-~~--~~---~~-----~~~~L~I~~v~~~DsG~Y~C~a~n~~ 75 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGL-PS--RA---MD-----FNGILTIRNVQLSDAGTYVCTGSNML 75 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcC-CC--cc---cc-----cCCEEEECCCCHHHCEEEEEEEeccC
Confidence 445667789999999999875 677889999854332 11 11 11 12489999999999999999999999
Q ss_pred CceEEEEEEE
Q psy16426 140 GDTDGSIKLY 149 (194)
Q Consensus 140 g~~~~~~~l~ 149 (194)
|...+...|+
T Consensus 76 g~~~~~~~l~ 85 (85)
T cd05754 76 DTDEATATLY 85 (85)
T ss_pred CeEeEEEEEC
Confidence 9998887764
No 88
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.17 E-value=9.7e-10 Score=71.44 Aligned_cols=72 Identities=19% Similarity=0.306 Sum_probs=52.7
Q ss_pred ceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCC-------CceeEEecCCceeEEEEEEEeecCCCCCeEEEEEE
Q psy16426 63 QLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQG-------SKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVS 135 (194)
Q Consensus 63 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a 135 (194)
.+..+.+|+++.|.|.+.+.|.|.+.|++++..+.... .++...... ....+|.|.++..+|.|.|+|.+
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~L~I~nV~~~D~G~YtC~~ 81 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKST---PTELIISISNVQLSDEGEYTCSI 81 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCC---CceEEEEECCCCcccCEEEEEEE
Confidence 45678899999999999999999999998554332211 122111111 12469999999999999999999
Q ss_pred Ec
Q psy16426 136 KN 137 (194)
Q Consensus 136 ~n 137 (194)
..
T Consensus 82 ~t 83 (95)
T cd05882 82 FT 83 (95)
T ss_pred Ee
Confidence 87
No 89
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.17 E-value=1.7e-10 Score=72.14 Aligned_cols=67 Identities=21% Similarity=0.427 Sum_probs=46.5
Q ss_pred EEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCC----CCCeEEEEEEEcCCCceEE
Q psy16426 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTK----QDFGAYKCVSKNSLGDTDG 144 (194)
Q Consensus 73 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~g~y~C~a~n~~g~~~~ 144 (194)
+.|.|.+.|.|.|.+.|++ ++..+............. .++|.|..+.. +|.|.|.|.|.|..|...+
T Consensus 1 i~l~C~~~G~P~P~v~W~k-~g~~l~~~~~~~~~~~~~----~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTR-NGTHFDPEKDPRVTMKPD----SGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEE-CCeECCCCCCCCEEEeCC----CCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 4689999999999999999 554443222111111111 24788887753 6899999999999997654
No 90
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.15 E-value=5.6e-10 Score=88.46 Aligned_cols=115 Identities=19% Similarity=0.295 Sum_probs=76.5
Q ss_pred eeeeCCCcEEEEeee-----eccCCceeEEEecCce------------EE------------------------------
Q psy16426 19 VGAMEGDQMTLECHS-----EAYPKSINYWTKENGE------------II------------------------------ 51 (194)
Q Consensus 19 ~~v~~G~~v~L~C~~-----~g~p~~~v~W~k~~~~------------l~------------------------------ 51 (194)
..+.+|+.+.|.|.+ .|.|.+.++|++++.. ++
T Consensus 36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~ 115 (326)
T PHA02785 36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLT 115 (326)
T ss_pred hhhhcCCCEEEECCCccccccCCCCceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEEE
Confidence 345679999999997 6888899999998643 11
Q ss_pred Eee--CCeEEeccceeEEeeCCeEEEEEEe-----eccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecC
Q psy16426 52 AQV--PPMIWIQNQLVGAMEGDQMTLECHS-----EAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVT 124 (194)
Q Consensus 52 v~~--~p~i~~~~~~~~~~~g~~~~l~C~~-----~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 124 (194)
|.. ++.+........+.+|..+.|.|.. .+.+++.+.|++ +..+ ...++. ... .+.|.|.+++
T Consensus 116 V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k-~~~~--~~~r~~--~~~-----~~~L~i~~v~ 185 (326)
T PHA02785 116 IVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSG-HRRL--RNKRLK--QRT-----PGIITIEDVR 185 (326)
T ss_pred EEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEcc-CCcc--CCcceE--ecC-----CCeEEEeecC
Confidence 110 1111111122334578889999972 356788999987 4322 112221 111 2489999999
Q ss_pred CCCCeEEEEEEEcCCCceE
Q psy16426 125 KQDFGAYKCVSKNSLGDTD 143 (194)
Q Consensus 125 ~~d~g~y~C~a~n~~g~~~ 143 (194)
.+|.|.|+|.+.|..|...
T Consensus 186 ~~d~G~Y~C~~~n~~g~~~ 204 (326)
T PHA02785 186 KNDAGYYTCVLKYIYGDKT 204 (326)
T ss_pred hhhCeEEEEEEEeccCCEE
Confidence 9999999999999888754
No 91
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.15 E-value=3.6e-10 Score=70.62 Aligned_cols=67 Identities=21% Similarity=0.412 Sum_probs=45.1
Q ss_pred EEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCC----CCCeEEEEEEEcCCCceEE
Q psy16426 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTK----QDFGAYKCVSKNSLGDTDG 144 (194)
Q Consensus 73 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~g~y~C~a~n~~g~~~~ 144 (194)
+.|.|.+.|.|.|.++|++ ++..+............. .++|.|..+.. .|.|.|+|.|.|..|...+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k-~g~~l~~~~~~~~~~~~~----~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTR-NGTHFDIDKDPKVTMKPN----TGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEE-CCeECCCcCCCCEEEeCC----CceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 4689999999999999999 444332111111111111 24677776654 3789999999999998765
No 92
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.15 E-value=4.9e-10 Score=70.04 Aligned_cols=66 Identities=23% Similarity=0.492 Sum_probs=46.1
Q ss_pred EEEEEEeeccCCCccEEEecCcEEee--CCCceeEEecCCceeEEEEEEEeecC----CCCCeEEEEEEEcCCCceEEE
Q psy16426 73 MTLECHSEAYPKSINYWTKENGEIIA--QGSKYEPILLDNAYKIHMKLTIKAVT----KQDFGAYKCVSKNSLGDTDGS 145 (194)
Q Consensus 73 ~~l~C~~~~~p~p~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~----~~d~g~y~C~a~n~~g~~~~~ 145 (194)
+.|.|.+.|.|.|.++|++ ++..+. ...++. ...+ .++|.|..+. .+|.|.|.|.|.|..|...+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k-~g~~~~~~~~~~~~-~~~~-----~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTR-NGKFFNVAKDPRVS-MRRR-----SGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEE-CCEEccCcCCCcEE-EeCC-----CceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 4689999999999999999 554432 222222 1111 2478887764 246899999999999977654
No 93
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.14 E-value=2.6e-10 Score=71.02 Aligned_cols=72 Identities=26% Similarity=0.464 Sum_probs=49.4
Q ss_pred EEEEEEeec-cCCCccEEEecCcEEeeCCC--ceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy16426 73 MTLECHSEA-YPKSINYWTKENGEIIAQGS--KYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIK 147 (194)
Q Consensus 73 ~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~ 147 (194)
+.|.|.+.+ .|.+.+.|++ ++..+.... ........ ....+.|.|.++...|+|.|+|.+.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~-~g~~i~~~~~~~~~~~~~~--~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFK-NGKEIGAKNKPDNKIKIRK--KKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEE-CCcccccCCCCCceEEEEe--CCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 468999864 5778899999 454443221 11111111 112468999999999999999999999998877654
No 94
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.13 E-value=2.6e-09 Score=69.39 Aligned_cols=89 Identities=19% Similarity=0.262 Sum_probs=68.1
Q ss_pred cceeEEeeCCeEEEEEEeeccCCCc-cEEEecCcEEeeCCCceeEEe-cCCceeEEEEEEEeecCCCCCeEEEEEEEcCC
Q psy16426 62 NQLVGAMEGDQMTLECHSEAYPKSI-NYWTKENGEIIAQGSKYEPIL-LDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139 (194)
Q Consensus 62 ~~~~~~~~g~~~~l~C~~~~~p~p~-v~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~ 139 (194)
...+.+.+|+++.|.|.+.++|.|. +.|..++ ............. ..+.++..+.|.+.++..+|.|.|+|.|.|..
T Consensus 10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~-~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~ 88 (101)
T cd05860 10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIYMN-RTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSD 88 (101)
T ss_pred CceEEEECCCCEEEEEEEEeCCCCeeeEEEcCC-cccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCC
Confidence 3567788999999999999999997 8999843 3332222211112 22335678899999999999999999999999
Q ss_pred CceEEEEEEEcc
Q psy16426 140 GDTDGSIKLYGK 151 (194)
Q Consensus 140 g~~~~~~~l~v~ 151 (194)
.....++.|.|.
T Consensus 89 ~~~s~tF~l~v~ 100 (101)
T cd05860 89 ASASVTFNVYVN 100 (101)
T ss_pred CeEEEEEEEEEe
Confidence 999999888764
No 95
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.12 E-value=1.5e-09 Score=70.62 Aligned_cols=83 Identities=18% Similarity=0.281 Sum_probs=57.4
Q ss_pred ceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEee-------CCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEE
Q psy16426 63 QLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIA-------QGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVS 135 (194)
Q Consensus 63 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a 135 (194)
..+.+.+|+++.|.|.+.+.|.+.+.|++.+..++. ...++...... ....+|.|.++..+|.|.|+|.+
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~---~~~~sL~I~~v~~~DsG~Y~C~~ 81 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRAS---WHELSISISDVSLSDEGQYTCSL 81 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECC---CCcEEEEECcCCcccCEEEEEEe
Confidence 567789999999999999999999999864333221 11233221111 12358999999999999999999
Q ss_pred EcCCCceEEEEEEE
Q psy16426 136 KNSLGDTDGSIKLY 149 (194)
Q Consensus 136 ~n~~g~~~~~~~l~ 149 (194)
.+..+ ......|.
T Consensus 82 ~t~~~-~~~~~~l~ 94 (95)
T cd07701 82 FTMPV-KTSKAYLT 94 (95)
T ss_pred EeecC-ccEEEEEE
Confidence 98533 34555554
No 96
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.10 E-value=7.3e-10 Score=68.17 Aligned_cols=65 Identities=25% Similarity=0.301 Sum_probs=47.5
Q ss_pred EEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEE
Q psy16426 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGS 145 (194)
Q Consensus 73 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~ 145 (194)
+.|.|.+.|.|+|.+.|++ ++..+..... . ...++ .+|.|.++..+|+|.|+|.|.|........
T Consensus 1 ~~l~c~v~g~P~P~v~W~k-dg~~l~~~~~-~-~~~~~-----~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~ 65 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLK-DGLPAAEKCS-R-YHVDG-----YSLVIKDVTEEDAGIYTILLGIKQYNLFKN 65 (72)
T ss_pred CeEEeeEEEcCCCeEEEEE-CCEECCCCCc-E-EEeCC-----CEEEECcCCHHHCEEEEEEEEccccceEee
Confidence 3689999999999999999 5554433211 1 11222 279999999999999999999986554433
No 97
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.04 E-value=7.7e-09 Score=67.20 Aligned_cols=84 Identities=19% Similarity=0.302 Sum_probs=56.7
Q ss_pred ceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEee-------CCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEE
Q psy16426 63 QLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIA-------QGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVS 135 (194)
Q Consensus 63 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a 135 (194)
+.+.+.+|+++.|.|.+.+.+.+.+.|+..++.... ...++...... ....+|.|.+++.+|.|.|+|.+
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~L~I~~v~~~DsG~Y~C~~ 81 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFS---ANELSISISNVSLSDEGRYTCSL 81 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCC---CCeeEEEEccCCcccCEEEEEEE
Confidence 456678999999999998888888999864433211 11233221111 12458999999999999999999
Q ss_pred EcCCCceEEEEEEEc
Q psy16426 136 KNSLGDTDGSIKLYG 150 (194)
Q Consensus 136 ~n~~g~~~~~~~l~v 150 (194)
.+... ..+...|.|
T Consensus 82 ~~~~~-~~~~~~~~v 95 (95)
T cd05717 82 YTMPV-QTAKATVTV 95 (95)
T ss_pred ecCCC-ceEEEEEEC
Confidence 87653 345555543
No 98
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.03 E-value=3.5e-09 Score=68.00 Aligned_cols=83 Identities=22% Similarity=0.345 Sum_probs=57.2
Q ss_pred ceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCC-ceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCC-C
Q psy16426 63 QLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGS-KYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL-G 140 (194)
Q Consensus 63 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~-g 140 (194)
..+.+..|+.+.|.|.+.+ |.+.+.|++++..+..... ....... ...|.|.++..+|.|.|.|.+.+.. +
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~~~~~~ 76 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT------EDGLLIRSVSPADAGVYTCQSVEHGFK 76 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc------CCCEEEccCCHHHCEEEEEEEecCccc
Confidence 4456788999999999877 7788999995443322110 0111111 1268899999999999999998754 4
Q ss_pred ceEEEEEEEccc
Q psy16426 141 DTDGSIKLYGKK 152 (194)
Q Consensus 141 ~~~~~~~l~v~~ 152 (194)
...+++.|.|.+
T Consensus 77 ~~~~~~~l~V~~ 88 (89)
T cd04979 77 QTLATYSLNVLE 88 (89)
T ss_pred eeEeEEEEEEec
Confidence 555677777753
No 99
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.01 E-value=3.2e-09 Score=67.76 Aligned_cols=81 Identities=20% Similarity=0.280 Sum_probs=55.2
Q ss_pred CCeEEEEEEeeccCCC--ccEEEecCcEEee--CCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEE
Q psy16426 70 GDQMTLECHSEAYPKS--INYWTKENGEIIA--QGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGS 145 (194)
Q Consensus 70 g~~~~l~C~~~~~p~p--~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~ 145 (194)
|+.+.|.|.+.+.+.+ .+.|..++..... ........ ........+.|.|.+++..|.|.|+|.|.|..|....+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~-~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRS-LQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceeccccccc-ccccceeeeEEEEecCCcccCEEEEEEEeecceEeccc
Confidence 6789999999876544 5689875543211 11110000 11123346799999999999999999999998888777
Q ss_pred EEEEcc
Q psy16426 146 IKLYGK 151 (194)
Q Consensus 146 ~~l~v~ 151 (194)
..|.|.
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 777664
No 100
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.97 E-value=4.3e-09 Score=66.70 Aligned_cols=69 Identities=22% Similarity=0.286 Sum_probs=50.5
Q ss_pred cceeEEeeCCeEEEEEEeec-cCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCC
Q psy16426 62 NQLVGAMEGDQMTLECHSEA-YPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140 (194)
Q Consensus 62 ~~~~~~~~g~~~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g 140 (194)
+....+.+|+.+.|.|.+.+ .+.+.+.|++ ++...... . ..+.|.|.+++.+|+|.|+|.+.+..+
T Consensus 6 ~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k-~g~~~~~~-------~-----~~~~l~I~~~~~~dsG~Y~C~~~~~~~ 72 (83)
T cd05753 6 VPSRVVFEGEPLVLRCHGWKNKPVYKVTYYR-DGKAKKYS-------H-----SNSNLSIPQATLSDSGSYHCSGIIGSY 72 (83)
T ss_pred CCcceecCCCCEEEEeeCCCCCcceEEEEEE-CCeEcccc-------C-----CCceEEECccCHHHCEEEEEEEEeCCc
Confidence 33445789999999999854 4556788999 44332211 0 124899999999999999999999887
Q ss_pred ceE
Q psy16426 141 DTD 143 (194)
Q Consensus 141 ~~~ 143 (194)
...
T Consensus 73 ~~~ 75 (83)
T cd05753 73 DYS 75 (83)
T ss_pred eec
Confidence 543
No 101
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.97 E-value=7.6e-09 Score=66.83 Aligned_cols=76 Identities=17% Similarity=0.223 Sum_probs=55.1
Q ss_pred eEEeeCCeEEEEEEeec-----cCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCC
Q psy16426 65 VGAMEGDQMTLECHSEA-----YPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139 (194)
Q Consensus 65 ~~~~~g~~~~l~C~~~~-----~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~ 139 (194)
+.+.+|....|.|...+ +|.|.+.|++ ++..+...... .. . ...|.|.++..+|+|.|+|.+.|..
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk-~~~~i~~~~~~--~~-~-----~~~L~I~~v~~~DsG~YtC~~~n~~ 75 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYK-DCKLLEGDRKR--FV-K-----GSKLLIQNVTEEDAGNYTCKLTFTH 75 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeE-CCEECCCCccE--Ee-c-----CCEEEEeeCChhhCEEEEEEEEecC
Confidence 34678999999998643 2567899999 55554433221 11 2 3489999999999999999999998
Q ss_pred CceEEEEEEE
Q psy16426 140 GDTDGSIKLY 149 (194)
Q Consensus 140 g~~~~~~~l~ 149 (194)
+.....+.+.
T Consensus 76 ~~~~~~~t~t 85 (92)
T cd05757 76 NGKQYNVTRT 85 (92)
T ss_pred CCEEEEEEEE
Confidence 8776554443
No 102
>smart00409 IG Immunoglobulin.
Probab=98.95 E-value=5.3e-08 Score=60.82 Aligned_cols=83 Identities=29% Similarity=0.510 Sum_probs=60.9
Q ss_pred eeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceE
Q psy16426 64 LVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTD 143 (194)
Q Consensus 64 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~ 143 (194)
...+..|+++.|.|.+.+.+.+.+.|+.+++.......+........ ..+|.|.++...|.|.|.|.+.+..+...
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~ 78 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS----NSTLTISNVTPEDSGTYTCAATNSSGSAS 78 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC----eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence 45567899999999999887888999984244443233333222111 46899999999999999999998888777
Q ss_pred EEEEEEc
Q psy16426 144 GSIKLYG 150 (194)
Q Consensus 144 ~~~~l~v 150 (194)
..+.|.|
T Consensus 79 ~~~~l~V 85 (86)
T smart00409 79 STTTLTV 85 (86)
T ss_pred EEEEEEE
Confidence 7766655
No 103
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.95 E-value=5.3e-08 Score=60.82 Aligned_cols=83 Identities=29% Similarity=0.510 Sum_probs=60.9
Q ss_pred eeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceE
Q psy16426 64 LVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTD 143 (194)
Q Consensus 64 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~ 143 (194)
...+..|+++.|.|.+.+.+.+.+.|+.+++.......+........ ..+|.|.++...|.|.|.|.+.+..+...
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~ 78 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS----NSTLTISNVTPEDSGTYTCAATNSSGSAS 78 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC----eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence 45567899999999999887888999984244443233333222111 46899999999999999999998888777
Q ss_pred EEEEEEc
Q psy16426 144 GSIKLYG 150 (194)
Q Consensus 144 ~~~~l~v 150 (194)
..+.|.|
T Consensus 79 ~~~~l~V 85 (86)
T smart00410 79 STTTLTV 85 (86)
T ss_pred EEEEEEE
Confidence 7766655
No 104
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.95 E-value=1.3e-08 Score=65.68 Aligned_cols=79 Identities=20% Similarity=0.318 Sum_probs=56.3
Q ss_pred eEEeeCCeEEEEEEeeccCCCccEEEecCcEEe-e----CCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEE-cC
Q psy16426 65 VGAMEGDQMTLECHSEAYPKSINYWTKENGEII-A----QGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSK-NS 138 (194)
Q Consensus 65 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~-n~ 138 (194)
+.+.+|+.+.|.|.. +.|.|.++|++.++... . ...++. . ..+.|.|.++..+|+|.|+|.+. |.
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~--~------~~~~L~I~~~~~~DsG~Y~C~a~~~~ 76 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLI--H------TERGLLLRSLQRSDAGVYTCTAVEHS 76 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEE--E------ecCeEEEeeCChhHCEEEEEEEEccC
Confidence 456789999999996 47888999997432111 0 111111 1 12469999999999999999997 56
Q ss_pred CCceEEEEEEEccc
Q psy16426 139 LGDTDGSIKLYGKK 152 (194)
Q Consensus 139 ~g~~~~~~~l~v~~ 152 (194)
.+...+.+.|.|..
T Consensus 77 ~~~~~~~~~l~v~~ 90 (91)
T cd05871 77 FSQTLAKYTLHVIE 90 (91)
T ss_pred CeEEEEEEEEEEec
Confidence 77677788887754
No 105
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.93 E-value=6.2e-09 Score=67.31 Aligned_cols=73 Identities=23% Similarity=0.291 Sum_probs=55.4
Q ss_pred ceeEEeeCCeEEEEEE-eeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCe-EEEEEEEcCCC
Q psy16426 63 QLVGAMEGDQMTLECH-SEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFG-AYKCVSKNSLG 140 (194)
Q Consensus 63 ~~~~~~~g~~~~l~C~-~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g-~y~C~a~n~~g 140 (194)
+...+.+|+.+.|.|. ..|.|.|.++|+.++........+.. ... .+.|.|.++..+|.| .|.|.|.|...
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~--~~~-----~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVS--MGQ-----NGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEE--ECC-----CceEEEEEEehhhCCCCeEEEEEcccc
Confidence 5677889999999997 68999999999975444344333332 111 259999999999999 89999999864
Q ss_pred ce
Q psy16426 141 DT 142 (194)
Q Consensus 141 ~~ 142 (194)
..
T Consensus 84 ~~ 85 (95)
T cd05845 84 RT 85 (95)
T ss_pred cc
Confidence 43
No 106
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.91 E-value=6.4e-09 Score=67.38 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=52.8
Q ss_pred ceeEEeeCCeEEEEEE-eeccCCCccEEEecCcEEe-eCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCC
Q psy16426 63 QLVGAMEGDQMTLECH-SEAYPKSINYWTKENGEII-AQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140 (194)
Q Consensus 63 ~~~~~~~g~~~~l~C~-~~~~p~p~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g 140 (194)
....+.+|..+.|.|. ..+.|.+.++|++++.... ....+.. .... .+.|.|.+++.+|.|+|+|.|.|...
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~-~~~~-----~G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRF-VSQT-----NGNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeE-EeCC-----CCcEEEeecCHhhCceeEEEEEeccc
Confidence 3456788999999996 5678889999999433221 2222221 1111 34999999999999999999999875
Q ss_pred ce
Q psy16426 141 DT 142 (194)
Q Consensus 141 ~~ 142 (194)
..
T Consensus 85 ~~ 86 (96)
T cd05727 85 TK 86 (96)
T ss_pred CC
Confidence 44
No 107
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.90 E-value=1.6e-08 Score=59.55 Aligned_cols=63 Identities=38% Similarity=0.634 Sum_probs=47.0
Q ss_pred eCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCC
Q psy16426 69 EGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140 (194)
Q Consensus 69 ~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g 140 (194)
+|+.+.|.|.+.+.+.+.+.|++ ++..... ... ... ....|.|.++...|.|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~-~~~~~~~--~~~--~~~----~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLK-DGKPLPE--SNR--LSA----SGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEE-CCEECCC--CCE--Eec----CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 47889999998888888999998 4444331 111 111 134899999999999999999998764
No 108
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.89 E-value=2.8e-08 Score=63.37 Aligned_cols=67 Identities=22% Similarity=0.443 Sum_probs=50.8
Q ss_pred cceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCC-CceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcC
Q psy16426 62 NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQG-SKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNS 138 (194)
Q Consensus 62 ~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~ 138 (194)
+....+..|+++.|.|.+.+ +.+.+.|++ ++..+... .++ ...+ ..|.|.+++.+|.|.|+|.+.+.
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~-ng~~i~~~~~r~--~~~~------~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKF-DGKVLTPESAKY--LLYR------DGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEE-CCEECCCCCceE--EEEC------CcEEEeCCCHHHCEEEEEEEEec
Confidence 45667889999999999865 568899999 55555433 222 2222 27999999999999999999876
No 109
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.84 E-value=4.1e-08 Score=61.13 Aligned_cols=78 Identities=31% Similarity=0.487 Sum_probs=54.0
Q ss_pred CeEEeccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEE
Q psy16426 56 PMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVS 135 (194)
Q Consensus 56 p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a 135 (194)
|.+...+ ..+.+|+.+.|.|.+.+.|.+.+.|++ ++....... ..+.+..+..+|.|.|+|.+
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~-~~~~~~~~~--------------~~~~~~~~~~~~~g~y~C~~ 64 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYK-NGSPINSSQ--------------NGLFIPNVSPEDSGNYTCRA 64 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEE-TTEEEEEES--------------SEEEESSEEGGGTEEEEEEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeee-eeeeeeeee--------------eeeeeeeeccccCEEEEEEE
Confidence 4454343 457889999999999988888899998 444333111 02566778889999999999
Q ss_pred EcCCCc-eEEEEEEEc
Q psy16426 136 KNSLGD-TDGSIKLYG 150 (194)
Q Consensus 136 ~n~~g~-~~~~~~l~v 150 (194)
.+..+. ...++.|.|
T Consensus 65 ~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 65 SNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred EeCCCCeEeeeEEeeC
Confidence 996653 334555543
No 110
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.79 E-value=3.8e-08 Score=63.71 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=50.7
Q ss_pred EEeeCCeEEEEEEeeccCCCccEEEecCcEE-eeC------------CCceeEEecCCceeEEEEEEEeecCCCCCeEEE
Q psy16426 66 GAMEGDQMTLECHSEAYPKSINYWTKENGEI-IAQ------------GSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYK 132 (194)
Q Consensus 66 ~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~ 132 (194)
.+..|+++.|.|...+.+.+.+.|+..+... ... ..++.... ........+|+|.++..+|+|+|+
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~-~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR-NLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceec-ccCCCCeEEEEECCCCHHHCEEEE
Confidence 4678999999999988888999998633222 111 11111111 000123468999999999999999
Q ss_pred EEEEcCCCc
Q psy16426 133 CVSKNSLGD 141 (194)
Q Consensus 133 C~a~n~~g~ 141 (194)
|.+.|..+.
T Consensus 82 C~v~~~~~~ 90 (94)
T cd07690 82 CEVEDKKEE 90 (94)
T ss_pred EEECCccce
Confidence 999987653
No 111
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.76 E-value=4.2e-07 Score=58.91 Aligned_cols=73 Identities=18% Similarity=0.347 Sum_probs=52.2
Q ss_pred ceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEe-------eCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEE
Q psy16426 63 QLVGAMEGDQMTLECHSEAYPKSINYWTKENGEII-------AQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVS 135 (194)
Q Consensus 63 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a 135 (194)
+++.+.+|+++.|.|.+.+.....+.|+..+..+. ....++.....++ ...+|.|.+++.+|.|.|+|.+
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~---~~~tL~I~~vq~~D~G~Y~Cqv 81 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSS---NELRVSLSNVSLSDEGRYFCQL 81 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCC---CEEEEEECcCCcccCEEEEEEE
Confidence 45678899999999999887666677876554332 1233554333222 2458999999999999999998
Q ss_pred EcC
Q psy16426 136 KNS 138 (194)
Q Consensus 136 ~n~ 138 (194)
...
T Consensus 82 ~t~ 84 (95)
T cd05881 82 YTD 84 (95)
T ss_pred Ecc
Confidence 753
No 112
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.74 E-value=3.3e-08 Score=60.67 Aligned_cols=73 Identities=27% Similarity=0.434 Sum_probs=47.7
Q ss_pred CeEEeccceeEEeeCCeEEEEEEeeccC-CCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEE
Q psy16426 56 PMIWIQNQLVGAMEGDQMTLECHSEAYP-KSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCV 134 (194)
Q Consensus 56 p~i~~~~~~~~~~~g~~~~l~C~~~~~p-~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~ 134 (194)
|.|.......... +..+.|.|.+.+.+ .+.++|+. ....... .........+.|.|.++..+|.|+|+|.
T Consensus 2 P~I~~~~~~~~~~-~~~~~l~C~~~~~~~~~~~~W~~-~~~~~~~-------~~~~~~~~~~~L~i~~v~~~~~g~y~C~ 72 (75)
T PF13927_consen 2 PQISVPPPPVVTS-GGSVTLTCSAEGGPPPPSISWYD-SNPSFNS-------NSRGSSSSNSTLTISNVTRSDNGTYTCI 72 (75)
T ss_dssp SEEEEESTSEEET-TEEEEEEEEESSEESSEEEEEET-EEEEEEE-------EEEEEEEEEEEEEESSCCGGGTEEEEEE
T ss_pred CEEEEcCCCcEee-ceeEEEEEEEccccCCeEEEEEe-cCCceee-------eeeeccceeeEEEEccCCHHhCcEEEEE
Confidence 5565555444333 33399999999887 77888991 1111111 1111123457999999999999999999
Q ss_pred EEc
Q psy16426 135 SKN 137 (194)
Q Consensus 135 a~n 137 (194)
|.|
T Consensus 73 a~N 75 (75)
T PF13927_consen 73 ASN 75 (75)
T ss_dssp EEE
T ss_pred EEC
Confidence 986
No 113
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.74 E-value=2.1e-07 Score=58.26 Aligned_cols=67 Identities=12% Similarity=0.161 Sum_probs=47.7
Q ss_pred EEEEEEee-ccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCce
Q psy16426 73 MTLECHSE-AYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDT 142 (194)
Q Consensus 73 ~~l~C~~~-~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~ 142 (194)
+.|+|... +.|++.+.||+ ++..+..... ....+..+...+.|.|.....+|.+.|+|.|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k-~~~~l~~~~~--~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYR-DRKELKGVIS--QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEE-CCEECCCCcc--cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 68999975 56788899999 5554433211 11222334556789999999999999999999987754
No 114
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.71 E-value=5.4e-08 Score=58.23 Aligned_cols=63 Identities=30% Similarity=0.545 Sum_probs=41.6
Q ss_pred CCeEEEEEEe-eccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEE
Q psy16426 70 GDQMTLECHS-EAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVS 135 (194)
Q Consensus 70 g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a 135 (194)
|+.+.|.|.+ .+.+.+.+.|++++... ....... ..... ......|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~-~~~~~~~-~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSL-PEGSTTN-RSTNS-VSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTT-SEEEEEE-EEETT-TEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccc-cCcceeE-eeccc-ceeeeEEEEccCCHHHCEEEEEEC
Confidence 6889999999 66677889999954332 2111111 11111 111225999999999999999986
No 115
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.69 E-value=1.8e-07 Score=60.58 Aligned_cols=72 Identities=17% Similarity=0.184 Sum_probs=49.8
Q ss_pred EEeeCCeEEEEEEe-ec----cCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCC
Q psy16426 66 GAMEGDQMTLECHS-EA----YPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140 (194)
Q Consensus 66 ~~~~g~~~~l~C~~-~~----~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g 140 (194)
.+..|.+..|.|.- .+ .+.+.+.||+ ++..+...........+. ..|.|.++..+|.|.|+|.+.+..+
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYK-d~~~l~~~~~~~~~~~~~-----~~L~I~~v~~~D~G~YtC~~~~~~~ 79 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYK-DSVLLDKDNEKFYSLKGS-----TYLHIIDVSLNDSGYYTCKLQFTHE 79 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEcc-CCEECcCCCcceEecCCC-----CEEEEEEcChhhCEEEEEEEEEeeC
Confidence 34678889999973 22 3567899999 565554332211111222 3799999999999999999999876
Q ss_pred ceE
Q psy16426 141 DTD 143 (194)
Q Consensus 141 ~~~ 143 (194)
...
T Consensus 80 g~~ 82 (95)
T cd05897 80 GKK 82 (95)
T ss_pred CEE
Confidence 654
No 116
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.68 E-value=2.8e-07 Score=58.11 Aligned_cols=76 Identities=20% Similarity=0.361 Sum_probs=49.1
Q ss_pred EEEEEEeec-cCCCccEEEecCcEEeeCCCceeEEecCCc-eeEEEEEEEeecCCCCCeEEEEEEEcCCCce--EEEEEE
Q psy16426 73 MTLECHSEA-YPKSINYWTKENGEIIAQGSKYEPILLDNA-YKIHMKLTIKAVTKQDFGAYKCVSKNSLGDT--DGSIKL 148 (194)
Q Consensus 73 ~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~--~~~~~l 148 (194)
+.|.|.+.| .|.+.+.|++ ++..+...........++. +...+.|.|.....+|.+.|+|.+.|..... ..++.|
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFR-DGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred EEEEEEEeCccCCCEEEEEE-CCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 679999987 5778999999 5655433221111222222 3445678888877788899999999876443 344555
Q ss_pred E
Q psy16426 149 Y 149 (194)
Q Consensus 149 ~ 149 (194)
.
T Consensus 81 ~ 81 (82)
T cd05759 81 D 81 (82)
T ss_pred c
Confidence 3
No 117
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.68 E-value=4.3e-08 Score=62.78 Aligned_cols=41 Identities=27% Similarity=0.411 Sum_probs=38.2
Q ss_pred CCeEEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 9 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
||.|...+.+..+.+|++++|.|.+.|.|.|.++|++++..
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~ 41 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEP 41 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcC
Confidence 68999999999999999999999999999999999998754
No 118
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.62 E-value=5.6e-07 Score=59.59 Aligned_cols=35 Identities=11% Similarity=0.287 Sum_probs=28.9
Q ss_pred EEEcCCeeeeeCCCcEEEEeeeeccC-CceeEEEec
Q psy16426 12 IWIQNQLVGAMEGDQMTLECHSEAYP-KSINYWTKE 46 (194)
Q Consensus 12 ~~~~~~~~~v~~G~~v~L~C~~~g~p-~~~v~W~k~ 46 (194)
+.+.|....+.+|++|+|.|.+.+.. ...+.||+.
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq 38 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQ 38 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence 56677778899999999999987655 567999984
No 119
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.62 E-value=7.7e-08 Score=62.63 Aligned_cols=42 Identities=29% Similarity=0.484 Sum_probs=38.6
Q ss_pred CCeEEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCceE
Q psy16426 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI 50 (194)
Q Consensus 9 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~l 50 (194)
||.|...+.+..+.+|++++|.|.+.|.|.|.+.|++++..+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l 42 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPL 42 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEEC
Confidence 689999999999999999999999999999999999987653
No 120
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.57 E-value=1e-06 Score=57.52 Aligned_cols=81 Identities=19% Similarity=0.178 Sum_probs=53.7
Q ss_pred eeEEeeCCeEEEEEEee-----------ccCCCccEEEecCcEEeeCCC-c---eeEEecCCceeEEEEEEEeecCCCCC
Q psy16426 64 LVGAMEGDQMTLECHSE-----------AYPKSINYWTKENGEIIAQGS-K---YEPILLDNAYKIHMKLTIKAVTKQDF 128 (194)
Q Consensus 64 ~~~~~~g~~~~l~C~~~-----------~~p~p~v~W~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~L~i~~~~~~d~ 128 (194)
...+.+|+.+.|.|..- ......+.|++++........ . .++ ... ...|.|.++..+|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri-~~~-----~~~Lwf~Pa~~eDS 82 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRM-SKE-----EDSIWFRPAELQDS 82 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeE-EEe-----CCEEEEEeCChhhC
Confidence 45578899999999851 111236889995322222111 0 111 111 23899999999999
Q ss_pred eEEEEEEEcCCCceEEEEEEEc
Q psy16426 129 GAYKCVSKNSLGDTDGSIKLYG 150 (194)
Q Consensus 129 g~y~C~a~n~~g~~~~~~~l~v 150 (194)
|.|+|.+.|........+.|.|
T Consensus 83 G~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 83 GLYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred eEEEEEECCCCcceEEEEEEEC
Confidence 9999999998877777776654
No 121
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.56 E-value=1.1e-06 Score=58.15 Aligned_cols=83 Identities=27% Similarity=0.406 Sum_probs=54.3
Q ss_pred eCCeEEEEEEeeccC------CCccEEEecC--c--E--Ee-eCCCcee------EE-ecCCceeEEEEEEEeecCCCCC
Q psy16426 69 EGDQMTLECHSEAYP------KSINYWTKEN--G--E--II-AQGSKYE------PI-LLDNAYKIHMKLTIKAVTKQDF 128 (194)
Q Consensus 69 ~g~~~~l~C~~~~~p------~p~v~W~~~~--~--~--~~-~~~~~~~------~~-~~~~~~~~~~~L~i~~~~~~d~ 128 (194)
.|+++.|.|.....+ ...+.|++.. . . .. ....... .. .........++|.|.+++.+|.
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 478999999976542 4578899842 1 1 11 1111110 00 0001112357999999999999
Q ss_pred eEEEEEEEcCCCceEEEEEEEcc
Q psy16426 129 GAYKCVSKNSLGDTDGSIKLYGK 151 (194)
Q Consensus 129 g~y~C~a~n~~g~~~~~~~l~v~ 151 (194)
|.|.|.+.+..+.....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEE
Confidence 99999999988877888888764
No 122
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.55 E-value=3.1e-07 Score=69.12 Aligned_cols=90 Identities=23% Similarity=0.273 Sum_probs=59.6
Q ss_pred ceeEEeeCCeEEEEEEeeccC-----------CCccEEEecCcEEee-C-CCc--eeEEecCCceeEEEEEEEeecCCCC
Q psy16426 63 QLVGAMEGDQMTLECHSEAYP-----------KSINYWTKENGEIIA-Q-GSK--YEPILLDNAYKIHMKLTIKAVTKQD 127 (194)
Q Consensus 63 ~~~~~~~g~~~~l~C~~~~~p-----------~p~v~W~~~~~~~~~-~-~~~--~~~~~~~~~~~~~~~L~i~~~~~~d 127 (194)
....+.+|+.+.|.|.+.+++ .+.+.|++.+..... . ..+ ...............|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 345678999999999987644 347889995432211 1 111 0000000000113489999999999
Q ss_pred CeEEEEEEEcCCCceEEEEEEEccc
Q psy16426 128 FGAYKCVSKNSLGDTDGSIKLYGKK 152 (194)
Q Consensus 128 ~g~y~C~a~n~~g~~~~~~~l~v~~ 152 (194)
+|.|+|.+.|..+.....+.|.|..
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~ 134 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDS 134 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEec
Confidence 9999999999988888888887744
No 123
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.55 E-value=1.5e-07 Score=60.69 Aligned_cols=42 Identities=19% Similarity=0.449 Sum_probs=38.7
Q ss_pred cCCeEEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 8 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
.||.|...+.+..+.+|++++|.|.+.|.|.|.+.|++++..
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~ 43 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQI 43 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEE
Confidence 588999999999999999999999999999999999998754
No 124
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.55 E-value=7.4e-07 Score=59.41 Aligned_cols=76 Identities=18% Similarity=0.324 Sum_probs=51.3
Q ss_pred eccceeEEeeCCeEEEEEEeeccCCCccEEEecCcE----E-eeC------------CCceeEEecCCceeEEEEEEEee
Q psy16426 60 IQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE----I-IAQ------------GSKYEPILLDNAYKIHMKLTIKA 122 (194)
Q Consensus 60 ~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~----~-~~~------------~~~~~~~~~~~~~~~~~~L~i~~ 122 (194)
..+..+.+.+|+++.|.|...+ +.+.++||+.... . ... ..++... .+. ....+|.|.+
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~-~~~--~~~~~L~I~~ 78 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSAS-RPS--LTRSSLTIKS 78 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEE-CcC--CCccEEEECC
Confidence 3456677889999999999877 6678999985421 1 000 1122111 111 1246899999
Q ss_pred cCCCCCeEEEEEEEcCC
Q psy16426 123 VTKQDFGAYKCVSKNSL 139 (194)
Q Consensus 123 ~~~~d~g~y~C~a~n~~ 139 (194)
++.+|+|.|+|.+.+..
T Consensus 79 ~~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 79 AEPEDSAVYLCASSLGG 95 (110)
T ss_pred CChhhCEEEEEEeeCCC
Confidence 99999999999998753
No 125
>KOG3515|consensus
Probab=98.54 E-value=4.5e-07 Score=77.51 Aligned_cols=131 Identities=18% Similarity=0.259 Sum_probs=79.2
Q ss_pred CCeEEEcCCeeeeeCCCcEEEEeeeeccC-CceeEEEecCceEE------------------------------------
Q psy16426 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYP-KSINYWTKENGEII------------------------------------ 51 (194)
Q Consensus 9 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~p-~~~v~W~k~~~~l~------------------------------------ 51 (194)
+|......-+..+..|++|.|.|.+.++| .+.+.|++.+..+.
T Consensus 7 ~pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~ 86 (741)
T KOG3515|consen 7 VPVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPS 86 (741)
T ss_pred CccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccccccccccCCceeeecchhhhhhhhhhhhcccccCce
Confidence 34444444445789999999999998864 56899999764432
Q ss_pred -------EeeCCeEEeccceeEEeeCCeEEEEEEee--ccCCCccEEEecCcEEeeCCC---ceeEEecCCceeEEEEEE
Q psy16426 52 -------AQVPPMIWIQNQLVGAMEGDQMTLECHSE--AYPKSINYWTKENGEIIAQGS---KYEPILLDNAYKIHMKLT 119 (194)
Q Consensus 52 -------v~~~p~i~~~~~~~~~~~g~~~~l~C~~~--~~p~p~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~ 119 (194)
+.++|.-...........+..+.+.|.+. +.|.+.+.|+.++........ .+.-....+.+...+-+.
T Consensus 87 ~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~ 166 (741)
T KOG3515|consen 87 RCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLK 166 (741)
T ss_pred ecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceecccccee
Confidence 22233222122233345678899999543 445667889883332222211 111011222222345788
Q ss_pred EeecCCCCCeEEEEEEEcCC
Q psy16426 120 IKAVTKQDFGAYKCVSKNSL 139 (194)
Q Consensus 120 i~~~~~~d~g~y~C~a~n~~ 139 (194)
+...+..+.|+|+|.+.|.+
T Consensus 167 ~~v~Rka~~g~~tC~A~nr~ 186 (741)
T KOG3515|consen 167 QTVSRKADNGNYTCPANNRN 186 (741)
T ss_pred eEEEEecCCceeEccccccc
Confidence 88888999999999999853
No 126
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.54 E-value=6.6e-07 Score=59.43 Aligned_cols=77 Identities=21% Similarity=0.313 Sum_probs=52.8
Q ss_pred ccceeEEeeCCeEEEEEEeeccCCCccEEEecCcE--E---ee--------CCCceeEEecCCceeEEEEEEEeecCCCC
Q psy16426 61 QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE--I---IA--------QGSKYEPILLDNAYKIHMKLTIKAVTKQD 127 (194)
Q Consensus 61 ~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~--~---~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 127 (194)
.+..+.+.+|+++.|.|.+.+.+...+.|++.+.. . .. ...++...... .....+|.|.+++.+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~~~~~D 81 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDK--SRKSSSLHISAAQLSD 81 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcc--cCCEEEEEECCCCHHH
Confidence 44567788999999999988777778999974321 0 00 11223211111 1235699999999999
Q ss_pred CeEEEEEEEcCC
Q psy16426 128 FGAYKCVSKNSL 139 (194)
Q Consensus 128 ~g~y~C~a~n~~ 139 (194)
+|.|.|.+.+..
T Consensus 82 sG~Y~C~~~~~~ 93 (109)
T cd04983 82 SAVYFCALSESG 93 (109)
T ss_pred CEEEEEEEecCC
Confidence 999999998754
No 127
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.49 E-value=2.1e-06 Score=56.14 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=32.0
Q ss_pred EEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEc
Q psy16426 115 HMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYG 150 (194)
Q Consensus 115 ~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v 150 (194)
..+|.|.+++.+|.|.|+|.+.|..+.....+.|.|
T Consensus 64 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 64 SVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred cEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 468999999999999999999998887778888876
No 128
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.47 E-value=1.1e-06 Score=56.64 Aligned_cols=74 Identities=20% Similarity=0.380 Sum_probs=50.1
Q ss_pred CCeEEeccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEE
Q psy16426 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCV 134 (194)
Q Consensus 55 ~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~ 134 (194)
.|.+...+. ..+..|++++|.|... .+...+.|++ ++...... . . ......+.+.|.+++.+|.|.|+|.
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k-~g~~~~~~-~---~---~~~~~~~~f~i~~v~~~~~G~Y~C~ 71 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYR-EGSTFAVK-K---P---PEPQNKAKFFIPSMKREHAGRYRCY 71 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEE-CCCCcccc-c---c---CCCceeEEEEccCCChhHCEEEEEE
Confidence 356665554 3478999999999875 4556677887 43321110 0 0 0112246899999999999999999
Q ss_pred EEcC
Q psy16426 135 SKNS 138 (194)
Q Consensus 135 a~n~ 138 (194)
..+.
T Consensus 72 ~~~~ 75 (91)
T cd05751 72 YRSG 75 (91)
T ss_pred EECC
Confidence 9886
No 129
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.45 E-value=2.9e-06 Score=55.13 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=50.1
Q ss_pred CeEEEEEEeeccC---CCccEEEecCcE---E---eeC--C----C--ceeEEecCCceeEEEEEEEeecCCCCCeEEEE
Q psy16426 71 DQMTLECHSEAYP---KSINYWTKENGE---I---IAQ--G----S--KYEPILLDNAYKIHMKLTIKAVTKQDFGAYKC 133 (194)
Q Consensus 71 ~~~~l~C~~~~~p---~p~v~W~~~~~~---~---~~~--~----~--~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C 133 (194)
+++.|.|.....+ ...+.|++.... . ... + . ..+....... ...++|.|.+++.+|.|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~sL~I~~v~~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSS-LEDATISISNLRLEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCC-CCceEEEEccCCcccCEEEEE
Confidence 3688999876643 335789985431 0 000 0 0 0111111110 135699999999999999999
Q ss_pred EEEc-CCCceEEEEEEEcc
Q psy16426 134 VSKN-SLGDTDGSIKLYGK 151 (194)
Q Consensus 134 ~a~n-~~g~~~~~~~l~v~ 151 (194)
.+.+ ..|.....+.|.|+
T Consensus 80 ~v~~~~~g~~~~~~~l~V~ 98 (98)
T cd05718 80 EFATFPQGNRQKVTTLTVL 98 (98)
T ss_pred EEEeCCCCcEEEEEEEEeC
Confidence 9875 67888888888763
No 130
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.44 E-value=4.8e-07 Score=59.11 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=37.6
Q ss_pred CeEEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCceE
Q psy16426 10 PMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI 50 (194)
Q Consensus 10 P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~l 50 (194)
|.|...+.++.+..|+++.|.|.+.|.|.+++.|++++..+
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l 41 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQI 41 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEe
Confidence 67888999999999999999999999999999999987653
No 131
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.44 E-value=5.5e-06 Score=55.78 Aligned_cols=88 Identities=18% Similarity=0.253 Sum_probs=52.9
Q ss_pred ceeEEeeCCeEEEEEEeeccC----CCccEEEe-cC-------------cEEee-CCCce--eEEecCCceeEEEEEEEe
Q psy16426 63 QLVGAMEGDQMTLECHSEAYP----KSINYWTK-EN-------------GEIIA-QGSKY--EPILLDNAYKIHMKLTIK 121 (194)
Q Consensus 63 ~~~~~~~g~~~~l~C~~~~~p----~p~v~W~~-~~-------------~~~~~-~~~~~--~~~~~~~~~~~~~~L~i~ 121 (194)
..+.+..|+.+.|.|...... ...+.|.. +. +.... ....+ +.....+.....++|.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 456678899999999976532 34677933 11 11111 00100 111111112346799999
Q ss_pred ecCCCCCeEEEEEEEcCCCc--eEEEEEEEc
Q psy16426 122 AVTKQDFGAYKCVSKNSLGD--TDGSIKLYG 150 (194)
Q Consensus 122 ~~~~~d~g~y~C~a~n~~g~--~~~~~~l~v 150 (194)
+++.+|.|+|+|.+.|.-.. ....+.|.|
T Consensus 86 nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v 116 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPDIVGKSSQVTLYV 116 (116)
T ss_pred cCCcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence 99999999999999987542 234555543
No 132
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.44 E-value=3.2e-06 Score=55.90 Aligned_cols=82 Identities=28% Similarity=0.500 Sum_probs=53.5
Q ss_pred eCCeEEEEEEeeccC------CCccEEEecCcE-------EeeCCC------ce--eEEecCCceeEEEEEEEeecCCCC
Q psy16426 69 EGDQMTLECHSEAYP------KSINYWTKENGE-------IIAQGS------KY--EPILLDNAYKIHMKLTIKAVTKQD 127 (194)
Q Consensus 69 ~g~~~~l~C~~~~~p------~p~v~W~~~~~~-------~~~~~~------~~--~~~~~~~~~~~~~~L~i~~~~~~d 127 (194)
.|+++.|.|.....| ...+.|++.... ...... .+ +..... .....++|.|.+++.+|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~sL~I~~v~~~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRR-AHDLDASLVITDLRLED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecC-CCCCcEEEEEccCChHH
Confidence 478999999876542 345889974311 111100 00 001100 01224689999999999
Q ss_pred CeEEEEEEEcCCCceEEEEEEEcc
Q psy16426 128 FGAYKCVSKNSLGDTDGSIKLYGK 151 (194)
Q Consensus 128 ~g~y~C~a~n~~g~~~~~~~l~v~ 151 (194)
.|.|+|.+.+..+.....+.|.|.
T Consensus 80 sG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 80 YGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred CEEEEEEEEecccceEEEEEEEEE
Confidence 999999999999888888888764
No 133
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.44 E-value=3.1e-07 Score=57.84 Aligned_cols=37 Identities=11% Similarity=0.278 Sum_probs=32.8
Q ss_pred EEcCCeeeeeCCCcEEEEeeeeccCCc-eeEEEecCce
Q psy16426 13 WIQNQLVGAMEGDQMTLECHSEAYPKS-INYWTKENGE 49 (194)
Q Consensus 13 ~~~~~~~~v~~G~~v~L~C~~~g~p~~-~v~W~k~~~~ 49 (194)
...|.++.+.+|+++.|+|.+.|.|.| .|.|++++..
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~ 39 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSP 39 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEE
Confidence 456778899999999999999999999 7999998765
No 134
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.40 E-value=7.5e-07 Score=56.88 Aligned_cols=41 Identities=29% Similarity=0.520 Sum_probs=36.9
Q ss_pred CCeEEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 9 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
||.+...+.+..+.+|+++.|.|.+.|.|.|.+.|++++..
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~ 41 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGS 41 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCc
Confidence 67788888888999999999999999999999999997764
No 135
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.39 E-value=3e-06 Score=53.71 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=51.6
Q ss_pred ceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEE-cCCCc
Q psy16426 63 QLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSK-NSLGD 141 (194)
Q Consensus 63 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~-n~~g~ 141 (194)
....+..|.++.|.|...+. .+.+.|+.++ ..+....++ .... ..|.|..++.+|+|.|.|.+. +.+..
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng-~~l~~~~r~--~~~~------~GLlI~~~~~~dsG~Y~C~s~E~gf~~ 73 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNG-TPLNAQFSY--RVGT------DGLLILVTSPEHSGTYRCYSEEEGFQQ 73 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECC-cccCCCcce--EEeC------CCCEEEECCHhhCEEEEEEEecCCCeE
Confidence 34567889999999998875 5689999944 433322222 2222 257799999999999999986 33333
Q ss_pred eEEEEEEEc
Q psy16426 142 TDGSIKLYG 150 (194)
Q Consensus 142 ~~~~~~l~v 150 (194)
..+...|.|
T Consensus 74 ~~~~y~l~v 82 (85)
T cd05872 74 LVASYSLNV 82 (85)
T ss_pred EEEEEEEEE
Confidence 334444443
No 136
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.37 E-value=4.2e-06 Score=55.31 Aligned_cols=88 Identities=17% Similarity=0.126 Sum_probs=52.7
Q ss_pred ceeEEeeCCeEEEEEEeeccCCCccEEEecCc-----EEee--CCCceeEE--ecCCc--eeEEEEEEEeecCCCCCeEE
Q psy16426 63 QLVGAMEGDQMTLECHSEAYPKSINYWTKENG-----EIIA--QGSKYEPI--LLDNA--YKIHMKLTIKAVTKQDFGAY 131 (194)
Q Consensus 63 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~-----~~~~--~~~~~~~~--~~~~~--~~~~~~L~i~~~~~~d~g~y 131 (194)
.+..+.+|+++.|.|.........+.|+++.. .+.. ........ ...+. ...+++|.|.+++..|.|.|
T Consensus 6 ~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y 85 (105)
T cd05774 6 VPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFY 85 (105)
T ss_pred cCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEE
Confidence 34457889999999865433334788998421 1111 10000000 00000 11235999999999999999
Q ss_pred EEEEEcCC-CceEEEEEEEc
Q psy16426 132 KCVSKNSL-GDTDGSIKLYG 150 (194)
Q Consensus 132 ~C~a~n~~-g~~~~~~~l~v 150 (194)
+|.+.+.. ......+.|.|
T Consensus 86 ~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 86 TLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred EEEEEeCCccEEEEEEEEEC
Confidence 99999987 45556666653
No 137
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.37 E-value=1.1e-06 Score=54.93 Aligned_cols=41 Identities=15% Similarity=0.413 Sum_probs=35.5
Q ss_pred CeEEEcCCeeeeeCCCcEEEEeeeeccCC-ceeEEEecCceE
Q psy16426 10 PMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEI 50 (194)
Q Consensus 10 P~~~~~~~~~~v~~G~~v~L~C~~~g~p~-~~v~W~k~~~~l 50 (194)
|.+++.|....+.+|++|+|+|.+.+.|. ..+.|++|+..+
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l 42 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLL 42 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEe
Confidence 67888999899999999999999999775 479999987653
No 138
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.36 E-value=5e-06 Score=55.61 Aligned_cols=38 Identities=21% Similarity=0.414 Sum_probs=31.7
Q ss_pred EEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEcc
Q psy16426 114 IHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGK 151 (194)
Q Consensus 114 ~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v~ 151 (194)
..++|.|.+++.+|+|.|+|.+.+........+.|.|.
T Consensus 72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 72 SDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred CCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 35799999999999999999999877777777766653
No 139
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.35 E-value=1.6e-06 Score=55.38 Aligned_cols=41 Identities=27% Similarity=0.485 Sum_probs=37.6
Q ss_pred CeEEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCceE
Q psy16426 10 PMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI 50 (194)
Q Consensus 10 P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~l 50 (194)
|.|...+.++.+.+|++++|.|.+.+.|.+.+.|++++..+
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l 41 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPL 41 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccce
Confidence 78888999999999999999999999999999999987654
No 140
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.35 E-value=9.5e-06 Score=51.12 Aligned_cols=68 Identities=13% Similarity=0.215 Sum_probs=44.2
Q ss_pred EEEEEEeecc-CCCccEEEecCcEEeeCCCceeEE-ecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCce
Q psy16426 73 MTLECHSEAY-PKSINYWTKENGEIIAQGSKYEPI-LLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDT 142 (194)
Q Consensus 73 ~~l~C~~~~~-p~p~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~ 142 (194)
+.|.|.+.+. |.+.+.|++ ++..+.... .... ..++.|...+.|.+.....++.+.|+|.+.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~-~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFK-GDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEE-CCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 5799999775 778899999 454443221 1111 122345556677776666666779999999876543
No 141
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.35 E-value=6.2e-06 Score=53.39 Aligned_cols=42 Identities=29% Similarity=0.438 Sum_probs=35.3
Q ss_pred CCeEEEcCCeeeeeCC---CcEEEEeeeeccCCceeEEEecCceE
Q psy16426 9 PPMIWIQNQLVGAMEG---DQMTLECHSEAYPKSINYWTKENGEI 50 (194)
Q Consensus 9 ~P~~~~~~~~~~v~~G---~~v~L~C~~~g~p~~~v~W~k~~~~l 50 (194)
.|.|...|.++.+.+| ++++|.|.+.|.|.+.|+|++++..+
T Consensus 1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l 45 (94)
T cd05850 1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEI 45 (94)
T ss_pred CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEEC
Confidence 3778888888877666 57999999999999999999987654
No 142
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.34 E-value=1.1e-05 Score=54.24 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=48.4
Q ss_pred cceeEEeeCCeEEEEEEeeccC----CCccEEEec---CcE---EeeC--------CCcee--EEecCCceeEEEEEEEe
Q psy16426 62 NQLVGAMEGDQMTLECHSEAYP----KSINYWTKE---NGE---IIAQ--------GSKYE--PILLDNAYKIHMKLTIK 121 (194)
Q Consensus 62 ~~~~~~~~g~~~~l~C~~~~~p----~p~v~W~~~---~~~---~~~~--------~~~~~--~~~~~~~~~~~~~L~i~ 121 (194)
+..+.+.+|+.+.|.|.....+ ...+.|+.. ++. +... ..++. ...........++|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 3567788999999999875432 235789742 111 1100 01110 00111111235689999
Q ss_pred ecCCCCCeEEEEEEEcCCC
Q psy16426 122 AVTKQDFGAYKCVSKNSLG 140 (194)
Q Consensus 122 ~~~~~d~g~y~C~a~n~~g 140 (194)
+++.+|.|.|+|.+.|...
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eCChhhCEEEEEEEEeCCC
Confidence 9999999999999998655
No 143
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.33 E-value=1.2e-06 Score=56.81 Aligned_cols=41 Identities=17% Similarity=0.347 Sum_probs=34.1
Q ss_pred CeEEEcCCeeeee---CCCcEEEEeeeeccCCceeEEEecCceE
Q psy16426 10 PMIWIQNQLVGAM---EGDQMTLECHSEAYPKSINYWTKENGEI 50 (194)
Q Consensus 10 P~~~~~~~~~~v~---~G~~v~L~C~~~g~p~~~v~W~k~~~~l 50 (194)
|.|+..|.++.+. +|++++|.|.+.|.|.|.|+|++++..+
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l 45 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEI 45 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeEC
Confidence 6777788776654 4789999999999999999999987653
No 144
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.33 E-value=4.4e-06 Score=56.15 Aligned_cols=75 Identities=19% Similarity=0.333 Sum_probs=49.3
Q ss_pred ccceeEEeeCCeEEEEEEeec--cCCCccEEEecCcE-----Eee-------------CCCceeEEecCCceeEEEEEEE
Q psy16426 61 QNQLVGAMEGDQMTLECHSEA--YPKSINYWTKENGE-----IIA-------------QGSKYEPILLDNAYKIHMKLTI 120 (194)
Q Consensus 61 ~~~~~~~~~g~~~~l~C~~~~--~p~p~v~W~~~~~~-----~~~-------------~~~~~~~~~~~~~~~~~~~L~i 120 (194)
.+..+.+.+|+++.|.|.+.+ .+.+.++||+.... ++. ...++....... ....+|.|
T Consensus 4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I 81 (116)
T cd04982 4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVG--KSTSTLTI 81 (116)
T ss_pred cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECC--CCEEEEEE
Confidence 345666788999999999876 56678999974321 010 011222111110 02568999
Q ss_pred eecCCCCCeEEEEEEEc
Q psy16426 121 KAVTKQDFGAYKCVSKN 137 (194)
Q Consensus 121 ~~~~~~d~g~y~C~a~n 137 (194)
.+++.+|+|.|.|.+..
T Consensus 82 ~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 82 QNLEKEDSATYYCAYWE 98 (116)
T ss_pred EECCHHHCEEEEEEEec
Confidence 99999999999999864
No 145
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.32 E-value=1.1e-05 Score=54.32 Aligned_cols=89 Identities=20% Similarity=0.315 Sum_probs=52.3
Q ss_pred cceeEEeeCCeEEEEEEeeccC----CCccEEEecCc------EEeeC---------CCcee--EEecCCceeEEEEEEE
Q psy16426 62 NQLVGAMEGDQMTLECHSEAYP----KSINYWTKENG------EIIAQ---------GSKYE--PILLDNAYKIHMKLTI 120 (194)
Q Consensus 62 ~~~~~~~~g~~~~l~C~~~~~p----~p~v~W~~~~~------~~~~~---------~~~~~--~~~~~~~~~~~~~L~i 120 (194)
+..+.+..|+.+.|.|...... ...+.|++... .+... ..++. ...........++|.|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4556788999999999875432 13578975321 01110 00110 0001111122468999
Q ss_pred eecCCCCCeEEEEEEEcCCCc--eEEEEEEEc
Q psy16426 121 KAVTKQDFGAYKCVSKNSLGD--TDGSIKLYG 150 (194)
Q Consensus 121 ~~~~~~d~g~y~C~a~n~~g~--~~~~~~l~v 150 (194)
.+++.+|.|.|+|.+.|.-.. ....+.|.|
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 116 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDIVGKPGEIRLRV 116 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 999999999999999976442 223566653
No 146
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.31 E-value=4.1e-06 Score=53.73 Aligned_cols=77 Identities=21% Similarity=0.205 Sum_probs=48.2
Q ss_pred CCeEEEEEEeeccCCCccEEEecCcEEeeC-------C------CceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEE
Q psy16426 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQ-------G------SKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSK 136 (194)
Q Consensus 70 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~-------~------~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~ 136 (194)
|+++.|.|.........+.|++.+...... . ..+..... .....+|.|.+++.+|+|.|+|.+.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~---~~~~~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRET---IYPNGSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEE---EcCCceEEEccCCchhcEEEEEEEE
Confidence 678999998776555678899844321100 0 00000000 1123589999999999999999999
Q ss_pred cCCCce-EEEEEEE
Q psy16426 137 NSLGDT-DGSIKLY 149 (194)
Q Consensus 137 n~~g~~-~~~~~l~ 149 (194)
...+.. ...+.|.
T Consensus 78 ~~~~~~~~~~~~l~ 91 (92)
T cd05741 78 STNGVTENAKFFLR 91 (92)
T ss_pred cCCCcEEEEEEEEE
Confidence 876543 3445554
No 147
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.31 E-value=1.4e-05 Score=50.15 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=49.2
Q ss_pred EEEEEEeecc-CCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCc-eEEEEEEEc
Q psy16426 73 MTLECHSEAY-PKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGD-TDGSIKLYG 150 (194)
Q Consensus 73 ~~l~C~~~~~-p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~-~~~~~~l~v 150 (194)
+.|.|.+.|. |.+.+.||+ ++..+...... .......+...++|.|.....+|...|+|.|.|..-. ....+.|.|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k-~~~~l~~~~~~-~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V 79 (82)
T cd05883 2 IELNCTAMASKPAATIRWFK-GNKELTGKSTV-EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEV 79 (82)
T ss_pred EEEEEEecCCCCCCEEEEEE-CCEECcCcccc-eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence 6799998764 667799999 44444332111 1122233556778888877777777999999987643 334455555
Q ss_pred c
Q psy16426 151 K 151 (194)
Q Consensus 151 ~ 151 (194)
.
T Consensus 80 ~ 80 (82)
T cd05883 80 Q 80 (82)
T ss_pred E
Confidence 4
No 148
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.30 E-value=4.8e-06 Score=53.77 Aligned_cols=73 Identities=23% Similarity=0.407 Sum_probs=50.6
Q ss_pred eeCCeEEEEEEeecc-C-CCccEEEecCcEEeeCCCc--eeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCc
Q psy16426 68 MEGDQMTLECHSEAY-P-KSINYWTKENGEIIAQGSK--YEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGD 141 (194)
Q Consensus 68 ~~g~~~~l~C~~~~~-p-~p~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~ 141 (194)
..|..+.|.|.+.|+ | ...++|++ ++........ ......++.|...+.|.+......+.+.|+|.+.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~-~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLK-NGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEE-CCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 357899999999998 4 34688999 5544433321 111234455666778888777777999999999887543
No 149
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.29 E-value=8.3e-06 Score=54.41 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=32.8
Q ss_pred EEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEcc
Q psy16426 114 IHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGK 151 (194)
Q Consensus 114 ~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v~ 151 (194)
..++|.|.+++.+|.|.|.|.+..........+.|.|.
T Consensus 70 ~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 70 GDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred CcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 35789999999999999999999877777888888764
No 150
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.27 E-value=6.4e-05 Score=52.20 Aligned_cols=114 Identities=19% Similarity=0.280 Sum_probs=70.0
Q ss_pred eCCCcEEEEeeeeccCCceeEEEecCceEEEeeCCeEEeccceeEEeeCCeEEEEEEeeccCC--CccEEEecCcEEee-
Q psy16426 22 MEGDQMTLECHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK--SINYWTKENGEIIA- 98 (194)
Q Consensus 22 ~~G~~v~L~C~~~g~p~~~v~W~k~~~~l~v~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~--p~v~W~~~~~~~~~- 98 (194)
..-+.-+..|.+...+... .....+.|..+|.+.+.+.......|..+.|.|.+.+..+ +.+.|++++.....
T Consensus 9 ~~~D~G~Y~C~~~~~~~~~----~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~ 84 (139)
T cd05771 9 TVHDEGTYICSVSTPPHQA----QQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPP 84 (139)
T ss_pred CHHHCEEEEEEEEccCcce----eeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccc
Confidence 3456788999976432211 1112233667887766655444457888999999999644 36889995432111
Q ss_pred ----CCCce--eEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCC
Q psy16426 99 ----QGSKY--EPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139 (194)
Q Consensus 99 ----~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~ 139 (194)
..... .....++.|...+.|.+......+...|+|.+....
T Consensus 85 ~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 85 PVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred eeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 11111 112345567777888887766666779999997654
No 151
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.27 E-value=1.1e-05 Score=50.90 Aligned_cols=74 Identities=14% Similarity=0.235 Sum_probs=53.0
Q ss_pred EEeeCCeEEEEEEeeccCCC--ccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceE
Q psy16426 66 GAMEGDQMTLECHSEAYPKS--INYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTD 143 (194)
Q Consensus 66 ~~~~g~~~~l~C~~~~~p~p--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~ 143 (194)
.+..|++++|+|+....+.| .+.|...++....+.. .+ .-+|.+..+...|+|.++|.+....-...
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~------~~-----~ktL~~~qv~~qdSG~WtC~V~~~~k~~~ 78 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN------QD-----KKTLNLVQLGPNDSGTWDCIVSVNSSEKT 78 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc------CC-----ccEEEeceeCcccCCEEEEEEEECceEEE
Confidence 46789999999998665555 8899987665443221 11 23889999999999999999976544445
Q ss_pred EEEEEEc
Q psy16426 144 GSIKLYG 150 (194)
Q Consensus 144 ~~~~l~v 150 (194)
..+.+.|
T Consensus 79 ~~~~V~V 85 (88)
T cd07694 79 LKLDIKV 85 (88)
T ss_pred EEeeEEE
Confidence 5555554
No 152
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.26 E-value=6.5e-06 Score=53.65 Aligned_cols=69 Identities=17% Similarity=0.300 Sum_probs=45.6
Q ss_pred EEeeCCeEEEEEEeecc--CCCccEEEecCcEE-----eeC--------CCceeEEecCCceeEEEEEEEeecCCCCCeE
Q psy16426 66 GAMEGDQMTLECHSEAY--PKSINYWTKENGEI-----IAQ--------GSKYEPILLDNAYKIHMKLTIKAVTKQDFGA 130 (194)
Q Consensus 66 ~~~~g~~~~l~C~~~~~--p~p~v~W~~~~~~~-----~~~--------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~ 130 (194)
.+.+|+++.|.|...+. ....++||+..... ... ..++.... + ....+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~-~---~~~~~L~I~~~~~~Dsg~ 77 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK-S---GNTASLTISGAQTEDEAD 77 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc-c---CCEEEEEECCCChhhCEE
Confidence 35789999999998664 45678898754211 100 01222111 1 124689999999999999
Q ss_pred EEEEEEcC
Q psy16426 131 YKCVSKNS 138 (194)
Q Consensus 131 y~C~a~n~ 138 (194)
|.|.+.+.
T Consensus 78 Y~C~~~~~ 85 (98)
T cd04984 78 YYCQVWDS 85 (98)
T ss_pred EEEEEccC
Confidence 99998753
No 153
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.25 E-value=1.8e-06 Score=55.36 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=32.0
Q ss_pred EEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 13 WIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 13 ~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
...+.++.+.+|+++.|.|.+.|.|.|.+.|++++..
T Consensus 4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~ 40 (90)
T cd04972 4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLI 40 (90)
T ss_pred ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEE
Confidence 3455667789999999999999999999999998764
No 154
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.24 E-value=1.8e-05 Score=51.72 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=50.0
Q ss_pred EeccceeEEeeCCeEEEEEEeecc-CCCc--cEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEE
Q psy16426 59 WIQNQLVGAMEGDQMTLECHSEAY-PKSI--NYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVS 135 (194)
Q Consensus 59 ~~~~~~~~~~~g~~~~l~C~~~~~-p~p~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a 135 (194)
.+......+.+|+.+.|.|.+.+. |.+. +.||+ ++..+... .+. ..........++|++.....+|..+|+|.|
T Consensus 5 ~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~r-G~~~l~~~-~~~-~~~~~~~~~~stlt~~~~r~D~g~~~sC~A 81 (100)
T cd05755 5 ELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLR-GNETLSRQ-PFG-DNTKSPVNAPATITITVDREDHGANFSCET 81 (100)
T ss_pred EEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEee-CCEEcccc-eec-cccCCCceeEEEEEEecchhhCCcEEEEEE
Confidence 334444446889999999998874 5555 58999 44444322 111 111122334567777765555555999999
Q ss_pred EcCCCce
Q psy16426 136 KNSLGDT 142 (194)
Q Consensus 136 ~n~~g~~ 142 (194)
.+..+..
T Consensus 82 ~l~l~~~ 88 (100)
T cd05755 82 ELDLRPE 88 (100)
T ss_pred EeccCcc
Confidence 9877654
No 155
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.24 E-value=6.3e-06 Score=53.68 Aligned_cols=83 Identities=20% Similarity=0.234 Sum_probs=50.2
Q ss_pred eeCCeEEEEEEeec-cCCCccEEEecCcEEeeCCCc---eeEEecCCce-------eEEEEEEEeecCCCCCeEEEEEEE
Q psy16426 68 MEGDQMTLECHSEA-YPKSINYWTKENGEIIAQGSK---YEPILLDNAY-------KIHMKLTIKAVTKQDFGAYKCVSK 136 (194)
Q Consensus 68 ~~g~~~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~~---~~~~~~~~~~-------~~~~~L~i~~~~~~d~g~y~C~a~ 136 (194)
..|+++.|.|.... .....+.|++........... ......+..+ ....+|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 36899999997654 334567799743222211110 0000111111 114689999999999999999999
Q ss_pred cCCCce-EEEEEEEc
Q psy16426 137 NSLGDT-DGSIKLYG 150 (194)
Q Consensus 137 n~~g~~-~~~~~l~v 150 (194)
+..|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 887654 34555544
No 156
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.23 E-value=2.4e-06 Score=55.24 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=33.5
Q ss_pred CCeEEEcCCeeeeeCC---CcEEEEeeeeccCCceeEEEecCce
Q psy16426 9 PPMIWIQNQLVGAMEG---DQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 9 ~P~~~~~~~~~~v~~G---~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
.|.|...|.+..+.++ +++.|.|.+.|.|.|.|+|++++..
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~ 44 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLD 44 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEE
Confidence 4777777777666554 4799999999999999999998764
No 157
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.23 E-value=7.8e-06 Score=53.70 Aligned_cols=73 Identities=23% Similarity=0.418 Sum_probs=48.7
Q ss_pred EEeeCCeEEEEEEeecc-CCCccEEEecCcE-----Eee-----------CCCceeEEecCCceeEEEEEEEeecCCCCC
Q psy16426 66 GAMEGDQMTLECHSEAY-PKSINYWTKENGE-----IIA-----------QGSKYEPILLDNAYKIHMKLTIKAVTKQDF 128 (194)
Q Consensus 66 ~~~~g~~~~l~C~~~~~-p~p~v~W~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 128 (194)
.+.+|+.+.|.|...+. +...++|++.... +.. ...++.... +. .....+|.|.+++.+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~sL~I~~v~~~D~ 79 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTR-DS-SKSSFTLTISSLQPEDS 79 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEE-ec-cCCEEEEEECCCCHHHC
Confidence 46789999999998875 5667889974331 110 011221111 11 11356999999999999
Q ss_pred eEEEEEEEcCCC
Q psy16426 129 GAYKCVSKNSLG 140 (194)
Q Consensus 129 g~y~C~a~n~~g 140 (194)
|.|.|.+.+..+
T Consensus 80 G~Y~C~v~~~~~ 91 (105)
T cd00099 80 AVYYCAVSLSGG 91 (105)
T ss_pred EEEEEEEecCCC
Confidence 999999998664
No 158
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.23 E-value=3.2e-06 Score=54.99 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=35.5
Q ss_pred cCCeEEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 8 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
+.|.|...+....+..|++++|.|.+.|.|.|.++|++++..
T Consensus 1 ~~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~ 42 (97)
T cd05869 1 AKPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRN 42 (97)
T ss_pred CCceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCcc
Confidence 368888887766677789999999999999999999997643
No 159
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.23 E-value=1.7e-06 Score=54.95 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=33.5
Q ss_pred EEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 12 IWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 12 ~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
|...|.+..+.+|+++.|.|.+.|.|.|.+.|++++..
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~ 39 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQP 39 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEE
Confidence 34567788999999999999999999999999998764
No 160
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.23 E-value=1.5e-05 Score=51.61 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=48.0
Q ss_pred CeEEeccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEE
Q psy16426 56 PMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVS 135 (194)
Q Consensus 56 p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a 135 (194)
|.+...+. ..+..|++++|.|.... ....+.|++.+...... . ..........+.+.|..++.+|+|.|.|..
T Consensus 2 P~l~a~p~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~---~--~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~ 74 (94)
T cd05711 2 PFLSAHPS-PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVL---H--LYEKHHGGFQASFPLGPVTPAHAGTYRCYG 74 (94)
T ss_pred CEEEecCC-CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCce---e--cccccCCeEEEEEEecCCCcccCEEEEEEE
Confidence 55554443 44779999999997764 44567899844331110 0 000001223568899999999999999997
Q ss_pred Ec
Q psy16426 136 KN 137 (194)
Q Consensus 136 ~n 137 (194)
..
T Consensus 75 ~~ 76 (94)
T cd05711 75 SY 76 (94)
T ss_pred EC
Confidence 53
No 161
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.22 E-value=9.5e-06 Score=53.73 Aligned_cols=92 Identities=26% Similarity=0.309 Sum_probs=55.5
Q ss_pred EeccceeEEeeCCeEEEEEEee-ccCCCccEEEecCc-----EEe-eCCCceeEE----------ecCCceeEEEEEEEe
Q psy16426 59 WIQNQLVGAMEGDQMTLECHSE-AYPKSINYWTKENG-----EII-AQGSKYEPI----------LLDNAYKIHMKLTIK 121 (194)
Q Consensus 59 ~~~~~~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~-----~~~-~~~~~~~~~----------~~~~~~~~~~~L~i~ 121 (194)
...+..+.+.+|+++.|.|... ......+.|++... .+. ......... ...+......+|.|.
T Consensus 5 t~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~ 84 (114)
T PF07686_consen 5 TQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIK 84 (114)
T ss_dssp EEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEES
T ss_pred EEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEEC
Confidence 3445677889999999999988 44456788987332 111 000000000 000000124589999
Q ss_pred ecCCCCCeEEEEEEEcC-CCceEEEEEEEc
Q psy16426 122 AVTKQDFGAYKCVSKNS-LGDTDGSIKLYG 150 (194)
Q Consensus 122 ~~~~~d~g~y~C~a~n~-~g~~~~~~~l~v 150 (194)
+++.+|.|.|.|.+... .......+.|.|
T Consensus 85 ~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 85 NLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 99999999999999876 223334455543
No 162
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.22 E-value=1.8e-05 Score=50.52 Aligned_cols=72 Identities=18% Similarity=0.388 Sum_probs=45.1
Q ss_pred CCeEEEEEEe-eccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCc
Q psy16426 70 GDQMTLECHS-EAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGD 141 (194)
Q Consensus 70 g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~ 141 (194)
|+.+.+.|.+ .++|.|.+.|+.++...............+..+...+.|.+.....++...|+|.+.+....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 6789999965 46788899999855444111111111223333445667887766556677999999987644
No 163
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.19 E-value=3.8e-06 Score=54.11 Aligned_cols=35 Identities=26% Similarity=0.456 Sum_probs=30.9
Q ss_pred cCCeeeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 15 QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 15 ~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
.|..+.+.+|++++|.|.+.|.|.|.+.|++++..
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~ 41 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQA 41 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEE
Confidence 45567899999999999999999999999998764
No 164
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.19 E-value=4e-06 Score=54.68 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=33.8
Q ss_pred cCCeEEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecC
Q psy16426 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKEN 47 (194)
Q Consensus 8 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~ 47 (194)
++|.|.. +.+..+.+|++++|.|.+.|.|.|.+.|++.+
T Consensus 1 ~~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~ 39 (98)
T cd05870 1 VQPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRAS 39 (98)
T ss_pred CCCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECC
Confidence 3677764 66788999999999999999999999999953
No 165
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.19 E-value=4.9e-05 Score=47.99 Aligned_cols=68 Identities=12% Similarity=0.191 Sum_probs=44.4
Q ss_pred EEEEEEeecc-CCCccEEEecCcEEeeCCCceeEEecC-CceeEEEEEEEeecCCCCCeEEEEEEEcCCCc
Q psy16426 73 MTLECHSEAY-PKSINYWTKENGEIIAQGSKYEPILLD-NAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGD 141 (194)
Q Consensus 73 ~~l~C~~~~~-p~p~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~ 141 (194)
+.|.|.+.+. |.+.+.|++ ++..+...........+ ..+...+.|.|......+...|+|.+.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k-~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRK-GDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEE-CCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 5799999876 777899999 55443332211111122 23455677888777777778999999987643
No 166
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.14 E-value=4.2e-06 Score=54.21 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=32.9
Q ss_pred EEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 12 IWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 12 ~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
|...|.+..+.+|+++.|.|.+.|.|.|.+.|++++..
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~ 39 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVL 39 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeE
Confidence 34567778888999999999999999999999998764
No 167
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.14 E-value=4.4e-06 Score=54.08 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=34.2
Q ss_pred cCCeEEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCc
Q psy16426 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENG 48 (194)
Q Consensus 8 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~ 48 (194)
.+|.|. .+.+..+.+|++++|.|.+.|.|.|.+.|++++.
T Consensus 1 ~~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~ 40 (96)
T cd05732 1 VQPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATR 40 (96)
T ss_pred CCccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCc
Confidence 367885 4556888999999999999999999999999764
No 168
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.13 E-value=4.1e-05 Score=50.11 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=31.2
Q ss_pred EEEEEEeecCCCCCeEEEEEEEc-CCCceEEEEEEEc
Q psy16426 115 HMKLTIKAVTKQDFGAYKCVSKN-SLGDTDGSIKLYG 150 (194)
Q Consensus 115 ~~~L~i~~~~~~d~g~y~C~a~n-~~g~~~~~~~l~v 150 (194)
.++|.|.+++.+|.|.|+|.+.+ ..|..++.+.|.|
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 56899999999999999999997 6777777788776
No 169
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.13 E-value=6.8e-06 Score=53.95 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=30.0
Q ss_pred CeeeeeCCCcEEEEeeeec-cCCceeEEEecCceE
Q psy16426 17 QLVGAMEGDQMTLECHSEA-YPKSINYWTKENGEI 50 (194)
Q Consensus 17 ~~~~v~~G~~v~L~C~~~g-~p~~~v~W~k~~~~l 50 (194)
..+.+.+|+++.|.|.+.| .|+|.+.|+||+..+
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i 45 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTL 45 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeC
Confidence 4678899999999999999 899999999987653
No 170
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.12 E-value=4.2e-06 Score=54.13 Aligned_cols=41 Identities=29% Similarity=0.599 Sum_probs=33.3
Q ss_pred CCeEEEcC--CeeeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 9 PPMIWIQN--QLVGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 9 ~P~~~~~~--~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
||.|...+ .+..+.+|++++|.|.+.|.|.|.+.|++++..
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~ 43 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEP 43 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEE
Confidence 56665544 334678999999999999999999999998754
No 171
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.12 E-value=7.5e-06 Score=53.35 Aligned_cols=41 Identities=29% Similarity=0.415 Sum_probs=34.3
Q ss_pred cCCeEEEcCCeeeeeCCCcEEEEeeeeccCCc-eeEEEecCce
Q psy16426 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKS-INYWTKENGE 49 (194)
Q Consensus 8 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~-~v~W~k~~~~ 49 (194)
.||.+. .+....+.+|++++|.|.+.|.|.| .+.|++++..
T Consensus 1 ~pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~ 42 (98)
T cd05758 1 GPPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENE 42 (98)
T ss_pred CCCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEE
Confidence 377775 4566778999999999999999998 6999998764
No 172
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.06 E-value=7.1e-05 Score=44.08 Aligned_cols=66 Identities=27% Similarity=0.352 Sum_probs=43.8
Q ss_pred EEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCC
Q psy16426 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139 (194)
Q Consensus 73 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~ 139 (194)
+.|.|.+.+.+...+.|+.++. ......................|.|.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGK-PLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCE-ECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 3688998886778899998443 32221110001122223446789999999999999999998876
No 173
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.06 E-value=3.1e-05 Score=50.32 Aligned_cols=80 Identities=26% Similarity=0.346 Sum_probs=49.7
Q ss_pred CCeEEEEEEeeccCCC-ccEEEecCcE---E-ee----CC----Ccee--EEecCCceeEEEEEEEeecCCCCCeEEEEE
Q psy16426 70 GDQMTLECHSEAYPKS-INYWTKENGE---I-IA----QG----SKYE--PILLDNAYKIHMKLTIKAVTKQDFGAYKCV 134 (194)
Q Consensus 70 g~~~~l~C~~~~~p~p-~v~W~~~~~~---~-~~----~~----~~~~--~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~ 134 (194)
|+++.|.|........ .+.|++..+. . .. .. ..+. ..... .....++|.|.+++.+|+|.|+|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~sL~I~nv~~~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITS-LGLNSTSITIWNVTLEDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcC-CCCCccEEEEeCCceeeeEEEEEE
Confidence 6789999986544322 4779874321 1 10 00 0110 01111 112356899999999999999999
Q ss_pred EE-cCCCceEEEEEEEc
Q psy16426 135 SK-NSLGDTDGSIKLYG 150 (194)
Q Consensus 135 a~-n~~g~~~~~~~l~v 150 (194)
+. ...|.....+.|.|
T Consensus 80 ~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 80 FNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEeCCCCCeeeEEEEEE
Confidence 86 56777777788776
No 174
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.05 E-value=3.8e-05 Score=51.61 Aligned_cols=77 Identities=22% Similarity=0.370 Sum_probs=49.6
Q ss_pred eccceeEEeeCCeEEEEEEeecc-CCCccEEEecCcE-----Eee--------CCCceeEEecCCceeEEEEEEEeecCC
Q psy16426 60 IQNQLVGAMEGDQMTLECHSEAY-PKSINYWTKENGE-----IIA--------QGSKYEPILLDNAYKIHMKLTIKAVTK 125 (194)
Q Consensus 60 ~~~~~~~~~~g~~~~l~C~~~~~-p~p~v~W~~~~~~-----~~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~ 125 (194)
..+..+.+..|+++.|.|..... ....+.|++.... +.. ...++.... +. .....+|.|.++..
T Consensus 4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~-~~-~~~~~sL~I~~~~~ 81 (116)
T cd07706 4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNF-QK-AQKSISLTISALQL 81 (116)
T ss_pred EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEE-ec-cCCEEEEEECCCCH
Confidence 44566778899999999987653 3456889974321 010 012222111 00 11246899999999
Q ss_pred CCCeEEEEEEEcC
Q psy16426 126 QDFGAYKCVSKNS 138 (194)
Q Consensus 126 ~d~g~y~C~a~n~ 138 (194)
+|.|.|.|.+...
T Consensus 82 ~Dsg~Y~C~~~~~ 94 (116)
T cd07706 82 EDSAKYFCALSTL 94 (116)
T ss_pred HHCEEEEEEEECC
Confidence 9999999999853
No 175
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.05 E-value=3.7e-05 Score=48.57 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=43.9
Q ss_pred EEEEEEeecc-CCCccEEEecCcEEeeCCCceeEE-ecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCc
Q psy16426 73 MTLECHSEAY-PKSINYWTKENGEIIAQGSKYEPI-LLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGD 141 (194)
Q Consensus 73 ~~l~C~~~~~-p~p~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~ 141 (194)
+.|.|.+.++ |...+.|++ ++............ ..+..|...+.|.+......+...|+|.+.+....
T Consensus 2 ~~LtC~a~gf~P~~~itW~k-ng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFK-NDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEE-CCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 6799999875 455678999 55554332211111 22334566778888766666777999999886543
No 176
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.04 E-value=8.6e-06 Score=51.82 Aligned_cols=33 Identities=12% Similarity=0.377 Sum_probs=29.6
Q ss_pred CeeeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 17 QLVGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 17 ~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
..+.+.+|+++.|.|.+.|.|.|.+.|++++..
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~ 35 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKA 35 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEE
Confidence 356789999999999999999999999998764
No 177
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.04 E-value=7.9e-06 Score=54.43 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=34.0
Q ss_pred cccCCeEEEcCCeeee----eCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 6 QNVPPMIWIQNQLVGA----MEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 6 v~~~P~~~~~~~~~~v----~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
|.++|.|...+....+ ..|.+++|.|.+.|.|.+.++|++++..
T Consensus 1 v~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~ 48 (109)
T cd05773 1 VRFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVP 48 (109)
T ss_pred CccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEE
Confidence 4567888777653332 2467899999999999999999998754
No 178
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.04 E-value=5.9e-06 Score=50.27 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=24.1
Q ss_pred CCcEEEEeeeeccCCceeEEEecCce
Q psy16426 24 GDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 24 G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
|++++|.|.+.|.|.|.|.|++++..
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~ 26 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEE 26 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEE
Confidence 78999999999999999999998765
No 179
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.02 E-value=3.7e-05 Score=50.97 Aligned_cols=70 Identities=17% Similarity=0.338 Sum_probs=44.1
Q ss_pred EEeeCCeEEEEEEeecc-CCCccEEEecCcEE---------eeC------------CCceeEEecCCceeEEEEEEEeec
Q psy16426 66 GAMEGDQMTLECHSEAY-PKSINYWTKENGEI---------IAQ------------GSKYEPILLDNAYKIHMKLTIKAV 123 (194)
Q Consensus 66 ~~~~g~~~~l~C~~~~~-p~p~v~W~~~~~~~---------~~~------------~~~~~~~~~~~~~~~~~~L~i~~~ 123 (194)
.+.+|+++.|.|.+.+. ....++||+..... ... ..++...... ......|+|.++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~--~~~~~~L~I~~~ 79 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTS--DSSRYRLHINRV 79 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEEC--CCCEEEEEECCC
Confidence 46789999999998653 34568899754320 000 0111110000 012357999999
Q ss_pred CCCCCeEEEEEEEc
Q psy16426 124 TKQDFGAYKCVSKN 137 (194)
Q Consensus 124 ~~~d~g~y~C~a~n 137 (194)
..+|+|.|+|...+
T Consensus 80 ~~~Dsg~YyCa~~~ 93 (107)
T cd07700 80 KPEDSGTYFCMTVG 93 (107)
T ss_pred CHHHCEEEEEeEcC
Confidence 99999999999864
No 180
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.01 E-value=8.6e-05 Score=48.51 Aligned_cols=36 Identities=17% Similarity=0.357 Sum_probs=32.3
Q ss_pred EEEEEEeecCCCCCeEEEEEEEc-CCCceEEEEEEEc
Q psy16426 115 HMKLTIKAVTKQDFGAYKCVSKN-SLGDTDGSIKLYG 150 (194)
Q Consensus 115 ~~~L~i~~~~~~d~g~y~C~a~n-~~g~~~~~~~l~v 150 (194)
.++|.|.+++.+|.|.|+|.+.+ ..|+.+..+.|.|
T Consensus 62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 47999999999999999999999 6888888888876
No 181
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.99 E-value=6.1e-05 Score=48.94 Aligned_cols=71 Identities=21% Similarity=0.323 Sum_probs=46.0
Q ss_pred EEeeCCeEEEEEEeec-cCCCccEEEecCcE----Ee--------eCCCceeEEecCCceeEEEEEEEeecCCCCCeEEE
Q psy16426 66 GAMEGDQMTLECHSEA-YPKSINYWTKENGE----II--------AQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYK 132 (194)
Q Consensus 66 ~~~~g~~~~l~C~~~~-~p~p~v~W~~~~~~----~~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~ 132 (194)
.+.+|+++.|.|.... .....+.|++.... .+ ....++.. .........+|+|.+++.+|+|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~--~~~~~~~~~~L~I~~v~~~DsG~Y~ 80 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSL--TDDPDNGVFTVTLNQLRKEDAGWYW 80 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEE--EecCCCCEEEEEEcCCCHHHCEEEE
Confidence 4678999999998764 34556889974321 11 01112221 1111123568999999999999999
Q ss_pred EEEEcC
Q psy16426 133 CVSKNS 138 (194)
Q Consensus 133 C~a~n~ 138 (194)
|.+...
T Consensus 81 C~~~~~ 86 (98)
T cd05716 81 CGVGDD 86 (98)
T ss_pred EEcccC
Confidence 998764
No 182
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=97.99 E-value=1.2e-05 Score=51.81 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=32.0
Q ss_pred CeEEE--cCCeeeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 10 PMIWI--QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 10 P~~~~--~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
|.|.. .+.+..+.+|++++|.|.+.|. .|.|.|++++..
T Consensus 2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~ 42 (91)
T cd05740 2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSL 42 (91)
T ss_pred CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEE
Confidence 56643 3356789999999999999999 999999998764
No 183
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=97.99 E-value=6.8e-06 Score=50.63 Aligned_cols=27 Identities=30% Similarity=0.791 Sum_probs=24.9
Q ss_pred CCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 23 EGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 23 ~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
+|+++.|.|.+.|.|.|.++|++++..
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~ 27 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQ 27 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEE
Confidence 699999999999999999999998764
No 184
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=97.99 E-value=1.2e-05 Score=51.83 Aligned_cols=35 Identities=26% Similarity=0.498 Sum_probs=30.7
Q ss_pred cCCeeeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 15 QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 15 ~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
.|..+.+.+|+++.|.|.+.|.|.|.+.||+++..
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~ 41 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQD 41 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEE
Confidence 35567889999999999999999999999998764
No 185
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.98 E-value=9.5e-05 Score=49.25 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=33.0
Q ss_pred EEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEcc
Q psy16426 114 IHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGK 151 (194)
Q Consensus 114 ~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v~ 151 (194)
..++|.|.+++.+|.|.|.|.+..........+.|.|.
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 46799999999999999999999877777788888764
No 186
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.94 E-value=0.00022 Score=47.88 Aligned_cols=38 Identities=26% Similarity=0.408 Sum_probs=33.6
Q ss_pred EEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEcc
Q psy16426 114 IHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGK 151 (194)
Q Consensus 114 ~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v~ 151 (194)
..++|.|.+++.+|.|.|.|.+.+........+.|.|.
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 35799999999999999999999988888888888764
No 187
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.92 E-value=0.00021 Score=46.06 Aligned_cols=78 Identities=22% Similarity=0.405 Sum_probs=46.0
Q ss_pred CCeEEeccceeEEeeCCeEEEEEEeeccCCC--ccEEEecCcE-EeeCCCceeE-EecCCceeEEEEEEEeecCCCCCeE
Q psy16426 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKS--INYWTKENGE-IIAQGSKYEP-ILLDNAYKIHMKLTIKAVTKQDFGA 130 (194)
Q Consensus 55 ~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p--~v~W~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~g~ 130 (194)
+|.+.+...... ++.+.|.|.+.|+.++ .+.|++ ++. .......... ...++.|...+.|.+... +...
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~-~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~---~~~~ 74 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLR-DGEDSVDDVESGEILPNGDGTYQLWVTLEVPPE---DKAR 74 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEE-CCEECcccccccceEECCCCeEEEEEEEEECCC---CCCE
Confidence 455554433322 6789999999997555 677998 443 2221111111 123444555666666554 6779
Q ss_pred EEEEEEcCC
Q psy16426 131 YKCVSKNSL 139 (194)
Q Consensus 131 y~C~a~n~~ 139 (194)
|+|.+....
T Consensus 75 ytC~V~H~~ 83 (93)
T cd07698 75 YSCRVEHSG 83 (93)
T ss_pred EEEEEEeCC
Confidence 999997654
No 188
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=97.91 E-value=2.9e-05 Score=50.95 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=29.5
Q ss_pred eeeeeCCCcEEEEeeeeccCCceeEEEecCceE
Q psy16426 18 LVGAMEGDQMTLECHSEAYPKSINYWTKENGEI 50 (194)
Q Consensus 18 ~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~l 50 (194)
...+..|+.+.|.|.+.|.|.|.+.|++++..+
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l 44 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTL 44 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEEC
Confidence 567888999999999999999999999988654
No 189
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.91 E-value=0.00017 Score=51.83 Aligned_cols=90 Identities=21% Similarity=0.395 Sum_probs=58.2
Q ss_pred ceeEEeeCCeEEEEEEee-ccCCCccEEEecCcEEeeCCCceeEEecC---Cce------eEEEEEEEeecCCCCCeEEE
Q psy16426 63 QLVGAMEGDQMTLECHSE-AYPKSINYWTKENGEIIAQGSKYEPILLD---NAY------KIHMKLTIKAVTKQDFGAYK 132 (194)
Q Consensus 63 ~~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~L~i~~~~~~d~g~y~ 132 (194)
+...+.+|+++.|.|... +...+.+.|.+.++.+..... +.....+ +.. ...+.|+|.+++.+|+|.|.
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~-~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~ 101 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGP-CGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYT 101 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEec-CCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEE
Confidence 356678999999999974 545677899985443322111 0011100 011 13468999999999999999
Q ss_pred EEEEc-CCC-ceEEEEEEEcccC
Q psy16426 133 CVSKN-SLG-DTDGSIKLYGKKK 153 (194)
Q Consensus 133 C~a~n-~~g-~~~~~~~l~v~~~ 153 (194)
|.+.- +.| ..+.+..|.|...
T Consensus 102 C~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 102 CIFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEEEecCCCCCceeEEEEEEEch
Confidence 99864 456 5666777776543
No 190
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=97.90 E-value=1.9e-05 Score=49.93 Aligned_cols=35 Identities=20% Similarity=0.405 Sum_probs=30.2
Q ss_pred cCCeeeeeCCCcEEEEeee-eccCCceeEEEecCce
Q psy16426 15 QNQLVGAMEGDQMTLECHS-EAYPKSINYWTKENGE 49 (194)
Q Consensus 15 ~~~~~~v~~G~~v~L~C~~-~g~p~~~v~W~k~~~~ 49 (194)
.|.+..+.+|+++.|.|.+ .|.|.+.+.|++++..
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~ 37 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQP 37 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEE
Confidence 4567788999999999998 7889999999998754
No 191
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=97.87 E-value=3e-05 Score=50.36 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=30.4
Q ss_pred EEEcCCeeeeeCCCcEEEEeeeeccCC-ceeEEEecCc
Q psy16426 12 IWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENG 48 (194)
Q Consensus 12 ~~~~~~~~~v~~G~~v~L~C~~~g~p~-~~v~W~k~~~ 48 (194)
+.+.|....+.+|++++|.|.+.|.|. |.+.|++.++
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g 40 (96)
T cd05865 3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNG 40 (96)
T ss_pred EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCC
Confidence 345667778999999999999999984 7999998433
No 192
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=97.87 E-value=1.8e-05 Score=49.93 Aligned_cols=32 Identities=16% Similarity=0.397 Sum_probs=28.3
Q ss_pred eeeeCCCcEEEEeeeeccCCceeEEEecCceE
Q psy16426 19 VGAMEGDQMTLECHSEAYPKSINYWTKENGEI 50 (194)
Q Consensus 19 ~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~l 50 (194)
+.+.+|+++.|.|.+.|.|.|.+.|++++..+
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l 35 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEF 35 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEEC
Confidence 45788999999999999999999999987653
No 193
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.87 E-value=0.0001 Score=48.62 Aligned_cols=67 Identities=18% Similarity=0.286 Sum_probs=43.4
Q ss_pred EeeCCeEEEEEEeeccCCCccEEEecCcE-------EeeCC--------------CceeEEecCCceeEEEEEEEeecCC
Q psy16426 67 AMEGDQMTLECHSEAYPKSINYWTKENGE-------IIAQG--------------SKYEPILLDNAYKIHMKLTIKAVTK 125 (194)
Q Consensus 67 ~~~g~~~~l~C~~~~~p~p~v~W~~~~~~-------~~~~~--------------~~~~~~~~~~~~~~~~~L~i~~~~~ 125 (194)
+.+|+++.|.|.........+.|++.... +.... .++... .+ .....|.|.++..
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~-~~---~~~~~L~I~~~~~ 78 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGS-RS---SNSFVLTLKNFQK 78 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEE-ec---CCEEEEEECCCCH
Confidence 46799999999876554566889975422 11000 011100 00 1245899999999
Q ss_pred CCCeEEEEEEEc
Q psy16426 126 QDFGAYKCVSKN 137 (194)
Q Consensus 126 ~d~g~y~C~a~n 137 (194)
+|+|+|.|.+.+
T Consensus 79 sDsgtY~Ca~~~ 90 (104)
T cd05720 79 ENEGYYFCSVAS 90 (104)
T ss_pred HHCEEEEEEEcc
Confidence 999999999764
No 194
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=97.86 E-value=1.9e-05 Score=48.90 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=23.9
Q ss_pred CCcEEEEeeeeccCCceeEEEecCce
Q psy16426 24 GDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 24 G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
|++++|.|.+.|.|.|.|+|++++..
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~ 26 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVP 26 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEE
Confidence 78999999999999999999998764
No 195
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=97.86 E-value=4.4e-05 Score=49.18 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=31.6
Q ss_pred EEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 12 IWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 12 ~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
+.+.+.+..+.+|++++|.|.+.|.|. .+.|+++++.
T Consensus 3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~ 39 (92)
T cd05866 3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGE 39 (92)
T ss_pred EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCe
Confidence 456677888999999999999999988 8999986554
No 196
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.84 E-value=0.00033 Score=46.71 Aligned_cols=72 Identities=15% Similarity=0.306 Sum_probs=45.1
Q ss_pred EeeCCeEEEEEEeeccCCC--ccEEEecCcEEeeCCCceeEEecC-CceeEEEEEEEeecCCCCCeEEEEEEEcCC
Q psy16426 67 AMEGDQMTLECHSEAYPKS--INYWTKENGEIIAQGSKYEPILLD-NAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139 (194)
Q Consensus 67 ~~~g~~~~l~C~~~~~p~p--~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~ 139 (194)
...|+.+.|.|.+.++.++ .+.|++ |+..............+ +.|...+.|.+.....++...|+|.+....
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~k-ng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLK-NGNELSAEQPNITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRT 92 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEE-CCEECcccccceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCC
Confidence 3467789999999997654 567999 55544322111111233 256667788777654443346999998754
No 197
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=97.84 E-value=2.1e-05 Score=48.65 Aligned_cols=26 Identities=23% Similarity=0.586 Sum_probs=23.8
Q ss_pred CCcEEEEeeeeccCCceeEEEecCce
Q psy16426 24 GDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 24 G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
|++++|.|.+.|.|.|.++|++++..
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~ 26 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAP 26 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEE
Confidence 78999999999999999999998764
No 198
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.83 E-value=0.00017 Score=48.74 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=47.1
Q ss_pred ccceeEEeeCCeEEEEEEeeccC------CCccEEEecCcE-----Eee--CC---------CceeEEecCCceeEEEEE
Q psy16426 61 QNQLVGAMEGDQMTLECHSEAYP------KSINYWTKENGE-----IIA--QG---------SKYEPILLDNAYKIHMKL 118 (194)
Q Consensus 61 ~~~~~~~~~g~~~~l~C~~~~~p------~p~v~W~~~~~~-----~~~--~~---------~~~~~~~~~~~~~~~~~L 118 (194)
.+..+.+.+|+.+.|.|...... ...+.|++.... +.. .. .++. .........++|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~--~~~~~~~~~~sL 82 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFR--LLGDLGKKNCSL 82 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEE--EecCCCCCEEEE
Confidence 34567788999999999764221 234779974321 110 00 1111 111112235689
Q ss_pred EEeecCCCCCeEEEEEEEcC
Q psy16426 119 TIKAVTKQDFGAYKCVSKNS 138 (194)
Q Consensus 119 ~i~~~~~~d~g~y~C~a~n~ 138 (194)
.|.+++.+|+|.|.|.+...
T Consensus 83 ~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 83 LISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EEccCChhhCeEEEEEEEcC
Confidence 99999999999999998653
No 199
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=97.83 E-value=4.3e-05 Score=49.00 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=32.2
Q ss_pred CeEEEcCCeeeeeC---CCcEEEEeeeeccCCceeEEEecCce
Q psy16426 10 PMIWIQNQLVGAME---GDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 10 P~~~~~~~~~~v~~---G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
|.|...+.++.+.+ |+++.|.|.+.|.|.|.++|++++..
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~ 44 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTE 44 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEE
Confidence 67777777666544 45799999999999999999998754
No 200
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.83 E-value=0.00013 Score=47.34 Aligned_cols=73 Identities=11% Similarity=0.165 Sum_probs=46.7
Q ss_pred EeeCCeEEEEEEeecc-CCCc--cEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCC
Q psy16426 67 AMEGDQMTLECHSEAY-PKSI--NYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139 (194)
Q Consensus 67 ~~~g~~~~l~C~~~~~-p~p~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~ 139 (194)
+..+..+.|.|.+.++ .++. +.|.++++..............++.|...+.|.+....-.+...|+|.+....
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 4568889999999999 5454 56999544332211111123455667777788777654444558999987654
No 201
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.82 E-value=7.2e-05 Score=48.98 Aligned_cols=72 Identities=18% Similarity=0.320 Sum_probs=46.6
Q ss_pred EeeCCeEEEEEEeeccCCC--ccEEEecCcEEeeCCCc-eeE-EecCCceeEEEEEEEeecCCCCCeEEEEEEEcCC
Q psy16426 67 AMEGDQMTLECHSEAYPKS--INYWTKENGEIIAQGSK-YEP-ILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139 (194)
Q Consensus 67 ~~~g~~~~l~C~~~~~p~p--~v~W~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~ 139 (194)
...+..+.|.|.+.++.+. .+.|++ ++........ ... ...++.|...+.|.+......+...|+|.+....
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~-~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKV-DGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEE-CCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 3456779999999997543 467999 5544322211 111 2236667777888887766555679999987653
No 202
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.81 E-value=0.00019 Score=46.62 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=32.3
Q ss_pred EEEEEEeecCCCCCeEEEEEEE-cCCCceEEEEEEEcc
Q psy16426 115 HMKLTIKAVTKQDFGAYKCVSK-NSLGDTDGSIKLYGK 151 (194)
Q Consensus 115 ~~~L~i~~~~~~d~g~y~C~a~-n~~g~~~~~~~l~v~ 151 (194)
.++|.|.+++.+|.|.|+|.+. .+.|+.++++.|.|.
T Consensus 59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~~ 96 (96)
T cd05887 59 DATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTVL 96 (96)
T ss_pred ccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEEC
Confidence 5699999999999999999985 578988998888763
No 203
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=97.74 E-value=4.7e-05 Score=47.49 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=27.8
Q ss_pred CCeeeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 16 NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 16 ~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
|.+..+.+|++++|.|.+.+. .+.+.|++++..
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~ 33 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQ 33 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcC
Confidence 356788999999999999986 568999998754
No 204
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=97.74 E-value=6.8e-05 Score=48.61 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=30.6
Q ss_pred CCeeeeeCCCcEEEEeeeeccCCceeEEEecCceE
Q psy16426 16 NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI 50 (194)
Q Consensus 16 ~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~l 50 (194)
..++.+.+|+++.|.|.+.+.|.+.+.|+++++.+
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~ 38 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQT 38 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccE
Confidence 35678999999999999999999999999987643
No 205
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.72 E-value=0.00013 Score=44.95 Aligned_cols=66 Identities=21% Similarity=0.358 Sum_probs=42.7
Q ss_pred CCeEEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCceEEEeeCCeEEeccceeEEeeCCeEEEEEEeec
Q psy16426 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEA 81 (194)
Q Consensus 9 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~l~v~~~p~i~~~~~~~~~~~g~~~~l~C~~~~ 81 (194)
.|.+...+ ..+.+|++++|.|.+.+.|.+.+.|++++..+. .....+.+ ..+...+.....|.+..
T Consensus 1 kP~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~-~~~~~~~~----~~~~~~~~g~y~C~~~~ 66 (80)
T PF13895_consen 1 KPVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPIN-SSQNGLFI----PNVSPEDSGNYTCRASN 66 (80)
T ss_dssp --EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEE-EESSEEEE----SSEEGGGTEEEEEEEEE
T ss_pred CcEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeee-eeeeeeee----eeeccccCEEEEEEEEe
Confidence 36776555 568899999999999998889999999775532 11111111 11334556667887643
No 206
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=97.70 E-value=4.1e-05 Score=47.07 Aligned_cols=26 Identities=31% Similarity=0.624 Sum_probs=23.6
Q ss_pred CCcEEEEeeeeccCCceeEEEecCce
Q psy16426 24 GDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 24 G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
|+++.|.|.+.|.|.|.|.|++++..
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~ 26 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTEL 26 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEe
Confidence 78999999999999999999997754
No 207
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.69 E-value=0.00032 Score=45.36 Aligned_cols=71 Identities=11% Similarity=0.202 Sum_probs=44.8
Q ss_pred eCCeEEEEEEeeccCCC--ccEEEecCcEEeeCC-Cce-eEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCC
Q psy16426 69 EGDQMTLECHSEAYPKS--INYWTKENGEIIAQG-SKY-EPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140 (194)
Q Consensus 69 ~g~~~~l~C~~~~~p~p--~v~W~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g 140 (194)
....+.|.|.+.|+.++ .+.|++ ++...... ... .....++.|...+.|.+......+...|+|.+.....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~-dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~ 87 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLV-DGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT 87 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEE-CCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence 34568999999997655 456998 55443221 111 1123445677777887776555566799999976543
No 208
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.68 E-value=0.00033 Score=47.18 Aligned_cols=74 Identities=15% Similarity=0.246 Sum_probs=46.0
Q ss_pred cceeEEeeCCeEEEEEEeeccC--CCccEEEecCcE----Ee-e--C-----------CCceeEEecCCceeEEEEEEEe
Q psy16426 62 NQLVGAMEGDQMTLECHSEAYP--KSINYWTKENGE----II-A--Q-----------GSKYEPILLDNAYKIHMKLTIK 121 (194)
Q Consensus 62 ~~~~~~~~g~~~~l~C~~~~~p--~p~v~W~~~~~~----~~-~--~-----------~~~~~~~~~~~~~~~~~~L~i~ 121 (194)
+....+.+|+.+.|.|...... ...++||+.... .+ . . ..++...... ......|+|.
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~--~~~~~~L~I~ 81 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDT--SKSTVYLQLN 81 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEc--cCCEEEEEEC
Confidence 4556678999999999875432 456889975321 11 0 0 0111111000 0113479999
Q ss_pred ecCCCCCeEEEEEEEc
Q psy16426 122 AVTKQDFGAYKCVSKN 137 (194)
Q Consensus 122 ~~~~~d~g~y~C~a~n 137 (194)
++..+|+|.|.|.+..
T Consensus 82 ~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 82 SLTPEDTAVYYCARGL 97 (117)
T ss_pred CCCHHHCEEEEEEEEc
Confidence 9999999999999865
No 209
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.67 E-value=0.0007 Score=41.71 Aligned_cols=65 Identities=25% Similarity=0.445 Sum_probs=42.4
Q ss_pred EEEEEEeeccCCC--ccEEEecCcEEeeCCCce-eEE-ecCCceeEEEEEEEeecCCCCCeEEEEEEEcC
Q psy16426 73 MTLECHSEAYPKS--INYWTKENGEIIAQGSKY-EPI-LLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNS 138 (194)
Q Consensus 73 ~~l~C~~~~~p~p--~v~W~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~ 138 (194)
+.|.|.+.++.++ .+.|++ ++.....+... ... ..++.|...+.|.+......+...|+|.+...
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k-~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLR-NGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEE-CCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 5799999997444 578999 55532222111 111 24556777778888776666777999998654
No 210
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.66 E-value=5.1e-05 Score=46.70 Aligned_cols=27 Identities=26% Similarity=0.572 Sum_probs=24.2
Q ss_pred CCcEEEEeeeeccCCceeEEEecCceE
Q psy16426 24 GDQMTLECHSEAYPKSINYWTKENGEI 50 (194)
Q Consensus 24 G~~v~L~C~~~g~p~~~v~W~k~~~~l 50 (194)
|++++|.|.+.|.|.|.|.|++++..+
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~ 27 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPI 27 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEEC
Confidence 789999999999999999999987643
No 211
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=97.65 E-value=0.00025 Score=43.20 Aligned_cols=24 Identities=21% Similarity=0.511 Sum_probs=21.8
Q ss_pred cEEEEeeeeccCCceeEEEecCce
Q psy16426 26 QMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 26 ~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
++.|.|.+.|.|.|.++|++++..
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~ 24 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDM 24 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeE
Confidence 589999999999999999998765
No 212
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.64 E-value=0.00042 Score=45.25 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=32.4
Q ss_pred CeEEEcCCeeeeeCCCcEEEEeeeec-cCCce--eEEEecCceE
Q psy16426 10 PMIWIQNQLVGAMEGDQMTLECHSEA-YPKSI--NYWTKENGEI 50 (194)
Q Consensus 10 P~~~~~~~~~~v~~G~~v~L~C~~~g-~p~~~--v~W~k~~~~l 50 (194)
-.+.+.+.+..+.+|+.++|+|.+.| .|.+. |.||+++..+
T Consensus 2 ~~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l 45 (100)
T cd05755 2 DSVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETL 45 (100)
T ss_pred ceEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEc
Confidence 35666777777899999999999887 46665 7999987664
No 213
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=97.64 E-value=6.8e-05 Score=46.62 Aligned_cols=26 Identities=23% Similarity=0.599 Sum_probs=23.8
Q ss_pred CCcEEEEeeeeccCCceeEEEecCce
Q psy16426 24 GDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 24 G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
|++++|.|.+.|.|.|.+.|++++..
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~ 26 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGH 26 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeE
Confidence 78999999999999999999998764
No 214
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.63 E-value=0.00028 Score=46.31 Aligned_cols=71 Identities=21% Similarity=0.345 Sum_probs=44.1
Q ss_pred eeCCeEEEEEEeeccCCCc--cEEEecCcEEeeCCCcee--EEe---cCCceeEEEEEEEeecCCCCCeEEEEEEEcCC
Q psy16426 68 MEGDQMTLECHSEAYPKSI--NYWTKENGEIIAQGSKYE--PIL---LDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139 (194)
Q Consensus 68 ~~g~~~~l~C~~~~~p~p~--v~W~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~ 139 (194)
..+..+.|.|.+.|+.++. +.|++ ++.......... ... .++.|...+.|.+......+...|+|.+.-..
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k-~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQ-NGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEE-CCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 4467899999999977655 47999 554433221111 111 13557777788776554445568999987543
No 215
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=97.59 E-value=6.2e-05 Score=45.46 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.3
Q ss_pred EEEEeeeeccCCceeEEEecCceE
Q psy16426 27 MTLECHSEAYPKSINYWTKENGEI 50 (194)
Q Consensus 27 v~L~C~~~g~p~~~v~W~k~~~~l 50 (194)
++|.|.+.|.|.|.++||+|+..+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l 24 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLI 24 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEEC
Confidence 579999999999999999987653
No 216
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=97.59 E-value=8.1e-05 Score=46.37 Aligned_cols=32 Identities=22% Similarity=0.506 Sum_probs=27.4
Q ss_pred eeeeCCCcEEEEeeeeccCCceeEEEecCceE
Q psy16426 19 VGAMEGDQMTLECHSEAYPKSINYWTKENGEI 50 (194)
Q Consensus 19 ~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~l 50 (194)
+....|++++|.|.+.|.|.|.+.|++++..+
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~ 35 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPL 35 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCC
Confidence 34567999999999999999999999987653
No 217
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=97.58 E-value=0.00012 Score=46.54 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=29.2
Q ss_pred cCCeeeeeCCCcEEEEeeeeccCCceeEEEecCceE
Q psy16426 15 QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI 50 (194)
Q Consensus 15 ~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~l 50 (194)
.|.+..+..|+++.|.|.+.+ +.++|.|++|+..+
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i 36 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVL 36 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEEC
Confidence 466788999999999999865 67899999987653
No 218
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.58 E-value=0.002 Score=40.48 Aligned_cols=68 Identities=24% Similarity=0.388 Sum_probs=45.4
Q ss_pred eCCeEEEEEEeeccCCCc--cEEEecCcEEeeCCCceeE-E-ecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCC
Q psy16426 69 EGDQMTLECHSEAYPKSI--NYWTKENGEIIAQGSKYEP-I-LLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140 (194)
Q Consensus 69 ~g~~~~l~C~~~~~p~p~--v~W~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g 140 (194)
.+..+.|.|.+.++.+.. +.|+. ++........... . ..++.|...+.|.+. ..+...|+|.+.....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~-~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLK-NGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEE-TTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEe-ccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 378899999999976554 66998 5555443322221 2 356677777788877 4455589999976543
No 219
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.57 E-value=0.0011 Score=43.01 Aligned_cols=67 Identities=10% Similarity=0.134 Sum_probs=42.3
Q ss_pred eEEEEEEe-eccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCc
Q psy16426 72 QMTLECHS-EAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGD 141 (194)
Q Consensus 72 ~~~l~C~~-~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~ 141 (194)
...+.|.+ .|.|.+.+.|+.+..... ........++.+...+.|.+......|...|+|.+.+....
T Consensus 17 ~~va~C~s~~gkP~a~ItW~~~~~~~~---~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 17 VTVATCVSANGKPPATISWETTLGGEA---ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred cEEEEEECCCCcCCCEEEEEeCCCCcc---eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 47788997 577888999998411111 01111223333556678888766666666999999987643
No 220
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=97.57 E-value=0.00021 Score=45.95 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=30.4
Q ss_pred EEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 12 IWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 12 ~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
+.+.|.+..+.+|+++.|.|.+.|.|. .+.|++.++.
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~ 39 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGE 39 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCC
Confidence 456677788999999999999999864 9999985443
No 221
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=97.56 E-value=0.00017 Score=46.70 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=28.9
Q ss_pred CCeeeeeCCCcEEEEeeeeccCCceeEEEecCc
Q psy16426 16 NQLVGAMEGDQMTLECHSEAYPKSINYWTKENG 48 (194)
Q Consensus 16 ~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~ 48 (194)
+.++.+.+|++++|.|.+.+.|.+.+.|++.++
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~ 36 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQ 36 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCC
Confidence 456889999999999999999999999997544
No 222
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=97.54 E-value=0.00011 Score=44.99 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=23.8
Q ss_pred CCcEEEEeeeeccCCceeEEEecCce
Q psy16426 24 GDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 24 G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
|+++.|.|.+.|.|.|.++|++++..
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~ 26 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTEL 26 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEE
Confidence 78999999999999999999998765
No 223
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=97.51 E-value=0.00015 Score=46.20 Aligned_cols=33 Identities=24% Similarity=0.532 Sum_probs=28.2
Q ss_pred CCeeeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 16 NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 16 ~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
+..+.+.+|+++.|.|.+.+ |.+.+.|++++..
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~ 35 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGP 35 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcc
Confidence 45567899999999999987 7789999998764
No 224
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=97.51 E-value=9.6e-05 Score=45.69 Aligned_cols=23 Identities=30% Similarity=0.704 Sum_probs=20.7
Q ss_pred EEEEeeeeccCCceeEEEecCce
Q psy16426 27 MTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 27 v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
|.|.|.+.|.|.|.|.|++++..
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~ 23 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEM 23 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEE
Confidence 57999999999999999998764
No 225
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=97.48 E-value=9.9e-05 Score=45.61 Aligned_cols=24 Identities=33% Similarity=0.775 Sum_probs=21.3
Q ss_pred EEEEeeeeccCCceeEEEecCceE
Q psy16426 27 MTLECHSEAYPKSINYWTKENGEI 50 (194)
Q Consensus 27 v~L~C~~~g~p~~~v~W~k~~~~l 50 (194)
|+|.|.+.|.|.|.|.|++++..+
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l 24 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESL 24 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEEC
Confidence 579999999999999999987653
No 226
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.48 E-value=0.0015 Score=42.30 Aligned_cols=68 Identities=19% Similarity=0.390 Sum_probs=42.9
Q ss_pred eCCeEEEEEEeeccCCCc--cEEEecCcEEeeCCC-ceeEEec-CCceeEEEEEEEeecCCCCCeEEEEEEEcC
Q psy16426 69 EGDQMTLECHSEAYPKSI--NYWTKENGEIIAQGS-KYEPILL-DNAYKIHMKLTIKAVTKQDFGAYKCVSKNS 138 (194)
Q Consensus 69 ~g~~~~l~C~~~~~p~p~--v~W~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~ 138 (194)
.++.+.|.|.+.++.+.. +.|.+ ++.. ..+. ....... ++.|...+.|.+....-.....|+|.+.-.
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k-~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~ 86 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNS-GSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHP 86 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeE-CCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeC
Confidence 456789999999976554 56999 5554 2221 1111222 566777778887765322345799998764
No 227
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.47 E-value=0.001 Score=40.59 Aligned_cols=27 Identities=26% Similarity=0.690 Sum_probs=23.7
Q ss_pred CCcEEEEeeeeccCCceeEEEecCceE
Q psy16426 24 GDQMTLECHSEAYPKSINYWTKENGEI 50 (194)
Q Consensus 24 G~~v~L~C~~~g~p~~~v~W~k~~~~l 50 (194)
|+++.|.|.+.|.|.|.+.|+++++.+
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~ 27 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKL 27 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEE
Confidence 789999999999999999999865543
No 228
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.47 E-value=0.0012 Score=42.76 Aligned_cols=34 Identities=26% Similarity=0.488 Sum_probs=28.6
Q ss_pred EEEEEEeecCCCCCeEEEEEEEc-CCCceEEEEEE
Q psy16426 115 HMKLTIKAVTKQDFGAYKCVSKN-SLGDTDGSIKL 148 (194)
Q Consensus 115 ~~~L~i~~~~~~d~g~y~C~a~n-~~g~~~~~~~l 148 (194)
.++|.|.+++.+|.|.|+|.+.. +.|+..+.+.+
T Consensus 59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 59 DMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred ccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 46999999999999999999975 57777776655
No 229
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=97.47 E-value=0.00015 Score=46.41 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=22.3
Q ss_pred CCcEEEEeeeeccCCceeEEEecC
Q psy16426 24 GDQMTLECHSEAYPKSINYWTKEN 47 (194)
Q Consensus 24 G~~v~L~C~~~g~p~~~v~W~k~~ 47 (194)
|++++|.|.+.|.|.|.|+|++++
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~ 24 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHV 24 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEec
Confidence 789999999999999999999964
No 230
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.46 E-value=0.0027 Score=41.00 Aligned_cols=66 Identities=20% Similarity=0.355 Sum_probs=41.3
Q ss_pred eCCeEEEEEEeeccCCCc--cEEEecCcEEeeCCCce-eE-EecCCceeEEEEEEEeecCCCCCeEEEEEEEcC
Q psy16426 69 EGDQMTLECHSEAYPKSI--NYWTKENGEIIAQGSKY-EP-ILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNS 138 (194)
Q Consensus 69 ~g~~~~l~C~~~~~p~p~--v~W~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~ 138 (194)
.+....|.|.+.|+.+.. +.|.+ ++.....+... .. ...|+.|...+.|.+.. .+...|+|.+.-.
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~-~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLK-NGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEE-CCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeC
Confidence 355579999999976554 56998 55543332111 11 23455566677777765 3455899998654
No 231
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=97.45 E-value=0.00057 Score=42.37 Aligned_cols=23 Identities=22% Similarity=0.554 Sum_probs=20.7
Q ss_pred EEEEeeeeccCCceeEEEecCce
Q psy16426 27 MTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 27 v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
+.|.|.+.|+|.|.|+|++++..
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~ 23 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKF 23 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEE
Confidence 47999999999999999998764
No 232
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.43 E-value=0.00021 Score=49.58 Aligned_cols=39 Identities=23% Similarity=0.346 Sum_probs=34.1
Q ss_pred EEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEcccCCC
Q psy16426 117 KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKK 155 (194)
Q Consensus 117 ~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v~~~p~ 155 (194)
+|.|.+++..|.|.|+|.+.+..+.....+.|.|..+|.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~ 40 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPR 40 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCc
Confidence 789999999999999999999888888888888876544
No 233
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.41 E-value=0.0019 Score=41.81 Aligned_cols=69 Identities=10% Similarity=0.107 Sum_probs=43.0
Q ss_pred eEEEEEEee-ccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceE
Q psy16426 72 QMTLECHSE-AYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTD 143 (194)
Q Consensus 72 ~~~l~C~~~-~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~ 143 (194)
.+.+.|.+. +.|.+.+.|+.+...... .......++.+...+.|.+.....+|...|+|.+.+......
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~---~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~ 86 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSSTLGGNAN---TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEP 86 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcCCCCCee---EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence 478899876 567888999984211110 111122333445567888776666666699999999764333
No 234
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=97.40 E-value=0.00013 Score=45.28 Aligned_cols=24 Identities=17% Similarity=0.573 Sum_probs=21.2
Q ss_pred EEEEeeeeccCCceeEEEecCceE
Q psy16426 27 MTLECHSEAYPKSINYWTKENGEI 50 (194)
Q Consensus 27 v~L~C~~~g~p~~~v~W~k~~~~l 50 (194)
+.|.|.+.|.|.|+|+|++++..+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l 24 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHF 24 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeEC
Confidence 579999999999999999987653
No 235
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.39 E-value=0.0013 Score=42.70 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=40.6
Q ss_pred eeCCeEEEEEEeeccCCCc--cEEEecCcEEeeCCCc-eeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcC
Q psy16426 68 MEGDQMTLECHSEAYPKSI--NYWTKENGEIIAQGSK-YEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNS 138 (194)
Q Consensus 68 ~~g~~~~l~C~~~~~p~p~--v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~ 138 (194)
..+..+.|.|.+.++.++. +.|.+ ++.....+.. ......++.|...+.|.+.... ....|+|.+.-.
T Consensus 14 ~~~~~~tL~C~a~gFyP~~I~v~W~k-ng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~ 84 (96)
T cd07697 14 EKQGQGIYLCLLENFFPDVIQVHWRE-GNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE 84 (96)
T ss_pred ccCCCEEEEEEEEEEeCCCeEEEEEE-CCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence 3456789999999976555 46998 5554332211 1112222356666777766543 233599999653
No 236
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.38 E-value=0.0025 Score=41.04 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=41.3
Q ss_pred eeCCeEEEEEEeeccCCCc--cEEEecCcEEeeCCCceeE-EecCCceeEEEEEEEeecCCCCCeEEEEEEEcC
Q psy16426 68 MEGDQMTLECHSEAYPKSI--NYWTKENGEIIAQGSKYEP-ILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNS 138 (194)
Q Consensus 68 ~~g~~~~l~C~~~~~p~p~--v~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~ 138 (194)
..|....|.|.+.|+.++. +.|.+ |+........... ...|..|...+.|.+. ..+...|+|.+.-.
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~-dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLK-NGVKIPKVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEE-CCEECCCcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEEC
Confidence 3466678999999976655 46999 5554432211111 2344556556666665 34566899998754
No 237
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=97.37 E-value=0.00044 Score=43.60 Aligned_cols=36 Identities=17% Similarity=0.377 Sum_probs=29.4
Q ss_pred EcCCeeeeeCCCcEEEEeeeec-cCCceeEEEecCce
Q psy16426 14 IQNQLVGAMEGDQMTLECHSEA-YPKSINYWTKENGE 49 (194)
Q Consensus 14 ~~~~~~~v~~G~~v~L~C~~~g-~p~~~v~W~k~~~~ 49 (194)
..|....+.+|++++|.|.+.+ .|.+.+.|++++..
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~ 42 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGG 42 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCc
Confidence 3456678899999999999875 68889999998754
No 238
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=97.37 E-value=0.00021 Score=45.62 Aligned_cols=26 Identities=27% Similarity=0.777 Sum_probs=23.7
Q ss_pred CCcEEEEeeeeccCCceeEEEecCce
Q psy16426 24 GDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 24 G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
|++++|.|.+.|.|.|.+.|++++..
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~ 26 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQ 26 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCc
Confidence 78999999999999999999998764
No 239
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=97.37 E-value=0.00016 Score=44.78 Aligned_cols=23 Identities=26% Similarity=0.702 Sum_probs=20.7
Q ss_pred EEEEeeeeccCCceeEEEecCce
Q psy16426 27 MTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 27 v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
|+|.|.+.|.|.|.|+|++++..
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~ 23 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTP 23 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEE
Confidence 58999999999999999998764
No 240
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.36 E-value=0.00041 Score=43.70 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=27.5
Q ss_pred cCCeeeeeCCCcEEEEeeeec-cCCceeEEEecCce
Q psy16426 15 QNQLVGAMEGDQMTLECHSEA-YPKSINYWTKENGE 49 (194)
Q Consensus 15 ~~~~~~v~~G~~v~L~C~~~g-~p~~~v~W~k~~~~ 49 (194)
.+....+.+|++++|+|.+.+ .+...+.||+++..
T Consensus 5 ~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~ 40 (83)
T cd05753 5 QVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKA 40 (83)
T ss_pred ECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeE
Confidence 344457899999999999854 56678999998764
No 241
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=97.36 E-value=0.00062 Score=44.34 Aligned_cols=40 Identities=23% Similarity=0.445 Sum_probs=32.4
Q ss_pred cCCeEEEcCCeeeeeCCCcEEEEeeeeccCCc-eeEEEecCc
Q psy16426 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKS-INYWTKENG 48 (194)
Q Consensus 8 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~-~v~W~k~~~ 48 (194)
.||.| .+...+.+.+|+++.|.|.+.+.|.| .|.|..++.
T Consensus 1 gpP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~ 41 (98)
T cd05898 1 GPPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKEN 41 (98)
T ss_pred CCCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccc
Confidence 37877 56677889999999999999887776 578888654
No 242
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.35 E-value=0.0026 Score=40.87 Aligned_cols=71 Identities=17% Similarity=0.390 Sum_probs=42.5
Q ss_pred cCCeEEEcCCeeeeeCCCcEEEEeeeecc-CC-ceeEEEecCceEE--EeeCC-------eEEeccceeEEeeCCeEEEE
Q psy16426 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAY-PK-SINYWTKENGEII--AQVPP-------MIWIQNQLVGAMEGDQMTLE 76 (194)
Q Consensus 8 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~-p~-~~v~W~k~~~~l~--v~~~p-------~i~~~~~~~~~~~g~~~~l~ 76 (194)
.||.+.+.+.... |+.++|.|.+.|. |. ..++|++++..+. ....+ .+.. ...+.+..++...+.
T Consensus 1 ~pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~-~s~l~v~~~~~~~yt 76 (93)
T cd07698 1 VPPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQL-WVTLEVPPEDKARYS 76 (93)
T ss_pred CCCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEE-EEEEEECCCCCCEEE
Confidence 4778777765433 7889999999995 54 3899999874321 11111 1111 122334445567778
Q ss_pred EEeecc
Q psy16426 77 CHSEAY 82 (194)
Q Consensus 77 C~~~~~ 82 (194)
|.+...
T Consensus 77 C~V~H~ 82 (93)
T cd07698 77 CRVEHS 82 (93)
T ss_pred EEEEeC
Confidence 887653
No 243
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=97.32 E-value=0.00017 Score=44.65 Aligned_cols=24 Identities=17% Similarity=0.592 Sum_probs=21.0
Q ss_pred EEEEeeeeccCCceeEEEecCceE
Q psy16426 27 MTLECHSEAYPKSINYWTKENGEI 50 (194)
Q Consensus 27 v~L~C~~~g~p~~~v~W~k~~~~l 50 (194)
++|.|.+.|.|.|.|+|++++..+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l 24 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHF 24 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeEC
Confidence 579999999999999999987653
No 244
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.32 E-value=0.0016 Score=43.69 Aligned_cols=78 Identities=18% Similarity=0.325 Sum_probs=47.3
Q ss_pred EeeCCeEEEEEEeeccCCC--ccEEEecCcEEeeCCCc-eeEEecC--CceeEEEEEEEeecCCCC-CeEEEEEEEcCCC
Q psy16426 67 AMEGDQMTLECHSEAYPKS--INYWTKENGEIIAQGSK-YEPILLD--NAYKIHMKLTIKAVTKQD-FGAYKCVSKNSLG 140 (194)
Q Consensus 67 ~~~g~~~~l~C~~~~~p~p--~v~W~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~L~i~~~~~~d-~g~y~C~a~n~~g 140 (194)
...+..+.|.|.+.++.+. .+.|++ ++.....+.. ......+ +.|...+.|.+......+ ...|+|.+.-...
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~k-ng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~ 93 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKV-NGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGG 93 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEE-CCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCC
Confidence 3356678999999997655 467999 5544332211 1111222 456777788888665434 4589999876544
Q ss_pred ceEEE
Q psy16426 141 DTDGS 145 (194)
Q Consensus 141 ~~~~~ 145 (194)
.....
T Consensus 94 ~~~~~ 98 (115)
T cd05769 94 TDTDK 98 (115)
T ss_pred cccee
Confidence 44433
No 245
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=97.32 E-value=0.00021 Score=44.04 Aligned_cols=23 Identities=35% Similarity=0.713 Sum_probs=20.7
Q ss_pred EEEEeeeeccCCceeEEEecCce
Q psy16426 27 MTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 27 v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
++|.|.+.|.|.|.|.|++++..
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~ 23 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEM 23 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEE
Confidence 57999999999999999998754
No 246
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.31 E-value=0.00027 Score=45.66 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=28.3
Q ss_pred CeeeeeCCCcEEEEeeeec-----cCCceeEEEecCce
Q psy16426 17 QLVGAMEGDQMTLECHSEA-----YPKSINYWTKENGE 49 (194)
Q Consensus 17 ~~~~v~~G~~v~L~C~~~g-----~p~~~v~W~k~~~~ 49 (194)
....+.+|+.+.|.|.+.+ .|.+.|.||+++..
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~ 44 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGK 44 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCC
Confidence 3567789999999999998 68889999998754
No 247
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.28 E-value=0.0091 Score=38.51 Aligned_cols=68 Identities=25% Similarity=0.284 Sum_probs=42.0
Q ss_pred eeCCeEEEEEEeeccCCCc--cEEEecCcEEeeCCCc-eeE-EecCCceeEEEEEEEeecCCCCCeEEEEEEEcCC
Q psy16426 68 MEGDQMTLECHSEAYPKSI--NYWTKENGEIIAQGSK-YEP-ILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139 (194)
Q Consensus 68 ~~g~~~~l~C~~~~~p~p~--v~W~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~ 139 (194)
..+....|.|.+.|+.++. +.|++ ++........ ... ...++.|...+.|.+.. .+...|+|.+.-..
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~---~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFK-NGQEETEGVVSTELIPNGDWTYQILVMLETTP---SRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEE-CCeecCCCceecceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEeCC
Confidence 3578899999999976554 56999 5544333211 111 12344566666666553 35558999987654
No 248
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=97.28 E-value=0.00037 Score=44.42 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=23.5
Q ss_pred CCcEEEEeeeeccCCceeEEEecCce
Q psy16426 24 GDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 24 G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
|++++|.|.+.|.|.+.+.|++++..
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~ 26 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRI 26 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEE
Confidence 78999999999999999999997753
No 249
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.27 E-value=0.0018 Score=41.11 Aligned_cols=40 Identities=30% Similarity=0.595 Sum_probs=27.9
Q ss_pred CeEEEcCCeeeeeCCCcEEEEeeee-ccCCceeEEEecCceE
Q psy16426 10 PMIWIQNQLVGAMEGDQMTLECHSE-AYPKSINYWTKENGEI 50 (194)
Q Consensus 10 P~~~~~~~~~~v~~G~~v~L~C~~~-g~p~~~v~W~k~~~~l 50 (194)
|.|.......... |+.+.|.|.+. ++|.+.++|+.+++..
T Consensus 1 p~I~~~~~~~~~~-~~~~~~~C~s~~~~P~~~i~W~~~~~~~ 41 (89)
T PF08205_consen 1 PEITPNPSLLEGE-GEEVTLTCSSSGGYPPPQITWYLDGGPV 41 (89)
T ss_dssp EEEEEECSEEESS-TEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred CEeeCCCeeEccc-ceEEEEEEEeCCeECCeEEEEEECCCce
Confidence 4555554333333 77999999754 5799999999988776
No 250
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=97.26 E-value=0.00037 Score=44.52 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=21.7
Q ss_pred CCcEEEEeeeeccCCceeEEEec
Q psy16426 24 GDQMTLECHSEAYPKSINYWTKE 46 (194)
Q Consensus 24 G~~v~L~C~~~g~p~~~v~W~k~ 46 (194)
|++++|.|.+.|.|.|.|.|+++
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~ 23 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKH 23 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEe
Confidence 78999999999999999999985
No 251
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.23 E-value=0.0017 Score=39.18 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=28.5
Q ss_pred CCeEEEcCCeeeeeCCCcEEEEeeeeccC-CceeEEE
Q psy16426 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYP-KSINYWT 44 (194)
Q Consensus 9 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~p-~~~v~W~ 44 (194)
+|.|...+.......+. ++|+|.+.+.+ .+.++|+
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~ 36 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY 36 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE
Confidence 58888888766655545 99999999987 8899999
No 252
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=97.23 E-value=0.0004 Score=42.51 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=21.7
Q ss_pred cEEEEeeeeccCCceeEEEecCce
Q psy16426 26 QMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 26 ~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
++.|.|.+.|.|.|.+.|++++..
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~ 24 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKP 24 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEE
Confidence 478999999999999999998765
No 253
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=97.21 E-value=0.00033 Score=42.68 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.0
Q ss_pred EEEEeeeeccCCceeEEEecCceE
Q psy16426 27 MTLECHSEAYPKSINYWTKENGEI 50 (194)
Q Consensus 27 v~L~C~~~g~p~~~v~W~k~~~~l 50 (194)
+.|.|.+.|.|.|.+.||+++..+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l 24 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLI 24 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEEC
Confidence 468999999999999999987653
No 254
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.20 E-value=0.0017 Score=42.32 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=44.9
Q ss_pred EeeCCeEEEEEEeeccC-C--CccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCC
Q psy16426 67 AMEGDQMTLECHSEAYP-K--SINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140 (194)
Q Consensus 67 ~~~g~~~~l~C~~~~~p-~--p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g 140 (194)
...+..+.|.|.+.++. + ..+.|..++.. .... .......++.|...+.|.+..-.-.....|+|.+.....
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~-t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQ-TSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEE-cCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 44677899999999966 3 34669984432 1100 111123456677778888775444445579999987643
No 255
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=97.20 E-value=0.00033 Score=42.98 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.5
Q ss_pred EEEEeeeeccCCceeEEEecCce
Q psy16426 27 MTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 27 v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
++|.|.+.|.|.|.|.|++++..
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~ 23 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLP 23 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEE
Confidence 47999999999999999998754
No 256
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=97.20 E-value=0.00029 Score=42.87 Aligned_cols=23 Identities=30% Similarity=0.702 Sum_probs=20.6
Q ss_pred EEEEeeeeccCCceeEEEecCce
Q psy16426 27 MTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 27 v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
+.|.|.+.|.|.|.+.|++++..
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~ 23 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGP 23 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcC
Confidence 47999999999999999998764
No 257
>PHA03376 BARF1; Provisional
Probab=97.19 E-value=0.0034 Score=45.40 Aligned_cols=72 Identities=22% Similarity=0.225 Sum_probs=44.8
Q ss_pred eeEEeeCCeEEEEEEee---ccCCCccEEEecC----cEEee-CC-----------CceeEEecCCceeEEEEEEEeecC
Q psy16426 64 LVGAMEGDQMTLECHSE---AYPKSINYWTKEN----GEIIA-QG-----------SKYEPILLDNAYKIHMKLTIKAVT 124 (194)
Q Consensus 64 ~~~~~~g~~~~l~C~~~---~~p~p~v~W~~~~----~~~~~-~~-----------~~~~~~~~~~~~~~~~~L~i~~~~ 124 (194)
.+....|+++.|.|.-. ....-.++|++.+ ...+. .+ ++.. +..+. .+.+|.|.+++
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD-~~~~~---gnvsLvI~~l~ 95 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFD-IHRSA---NTFFLVVTAAN 95 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEE-EEecC---CeEEEEEEeee
Confidence 45567899999999754 1233467799831 11111 11 1111 11111 35699999999
Q ss_pred CCCCeEEEEEEEcCC
Q psy16426 125 KQDFGAYKCVSKNSL 139 (194)
Q Consensus 125 ~~d~g~y~C~a~n~~ 139 (194)
.+|.|+|+|.+.-..
T Consensus 96 lSDdGtY~C~fQkge 110 (221)
T PHA03376 96 ISHDGNYLCRMKLGE 110 (221)
T ss_pred ecCCceEEEEEEcCC
Confidence 999999999997543
No 258
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=97.19 E-value=0.0007 Score=42.25 Aligned_cols=31 Identities=19% Similarity=0.471 Sum_probs=27.1
Q ss_pred eeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 19 VGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 19 ~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
+.+.+|++++|.|.+.+.|.+.+.|++++..
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~ 34 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKP 34 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEE
Confidence 4567899999999999999999999998754
No 259
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.19 E-value=0.0016 Score=40.18 Aligned_cols=20 Identities=35% Similarity=0.684 Sum_probs=18.4
Q ss_pred EEEEEEeecCCCCCeEEEEE
Q psy16426 115 HMKLTIKAVTKQDFGAYKCV 134 (194)
Q Consensus 115 ~~~L~i~~~~~~d~g~y~C~ 134 (194)
..+|.|.+++.+|.|.|.|.
T Consensus 61 ~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 61 DVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred EEEEEEcCCCHHHCEEEEEc
Confidence 46899999999999999996
No 260
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.18 E-value=0.00042 Score=43.06 Aligned_cols=24 Identities=21% Similarity=0.540 Sum_probs=22.2
Q ss_pred CCcEEEEeeeeccCCceeEEEecC
Q psy16426 24 GDQMTLECHSEAYPKSINYWTKEN 47 (194)
Q Consensus 24 G~~v~L~C~~~g~p~~~v~W~k~~ 47 (194)
|++++|.|.+.|.|.|.+.|++++
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~ 24 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQV 24 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecC
Confidence 789999999999999999999973
No 261
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=97.18 E-value=0.00037 Score=42.49 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEeeeeccCCceeEEEecCce
Q psy16426 27 MTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 27 v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
+.|.|.+.|.|.|.+.|++++..
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~ 23 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKL 23 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEE
Confidence 47999999999999999998764
No 262
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=97.16 E-value=0.0003 Score=42.51 Aligned_cols=23 Identities=17% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEeeeeccCCceeEEEecCce
Q psy16426 27 MTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 27 v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
|.|.|.+.|.|.|.+.|++++..
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~ 23 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQ 23 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEE
Confidence 57999999999999999997754
No 263
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=97.11 E-value=0.00042 Score=42.43 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.6
Q ss_pred EEEEeeeeccCCceeEEEecCce
Q psy16426 27 MTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 27 v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
+.|.|.+.|.|.|.+.|++++..
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~ 23 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLP 23 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEE
Confidence 47999999999999999998754
No 264
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.05 E-value=0.00079 Score=38.90 Aligned_cols=27 Identities=33% Similarity=0.599 Sum_probs=23.7
Q ss_pred CCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 23 EGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 23 ~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
+|++++|.|.+.+.+.+.+.|++++..
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~ 27 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKP 27 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEE
Confidence 589999999988888899999997654
No 265
>KOG3515|consensus
Probab=97.05 E-value=0.0015 Score=56.59 Aligned_cols=144 Identities=19% Similarity=0.197 Sum_probs=80.1
Q ss_pred cccCCe-EEEcCCeeeeeCCCcEEEEeeee-ccCCceeEEEecCceEE--------------------------------
Q psy16426 6 QNVPPM-IWIQNQLVGAMEGDQMTLECHSE-AYPKSINYWTKENGEII-------------------------------- 51 (194)
Q Consensus 6 v~~~P~-~~~~~~~~~v~~G~~v~L~C~~~-g~p~~~v~W~k~~~~l~-------------------------------- 51 (194)
++.+|. ..+.+....+..|.+..+.|... +.|.+.+.|+++.....
T Consensus 296 v~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~ 375 (741)
T KOG3515|consen 296 VQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQ 375 (741)
T ss_pred cccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCce
Confidence 444444 33333444567799999999854 56788999999543332
Q ss_pred ---------------------EeeCCeEEec-cceeEEeeCCeEEEEEEeeccC-CCccEEEecCcEEeeCCC-ceeEEe
Q psy16426 52 ---------------------AQVPPMIWIQ-NQLVGAMEGDQMTLECHSEAYP-KSINYWTKENGEIIAQGS-KYEPIL 107 (194)
Q Consensus 52 ---------------------v~~~p~i~~~-~~~~~~~~g~~~~l~C~~~~~p-~p~v~W~~~~~~~~~~~~-~~~~~~ 107 (194)
+.++|.+... .......+++.....-.+.++| .++++|......+.+... .+. ..
T Consensus 376 v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~-v~ 454 (741)
T KOG3515|consen 376 VTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVR-VG 454 (741)
T ss_pred EEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEE-ee
Confidence 1112211111 1111122333333322233444 567889874444443322 121 11
Q ss_pred cCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEcccCCC
Q psy16426 108 LDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKK 155 (194)
Q Consensus 108 ~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v~~~p~ 155 (194)
.. ..-+.+.++...|.|.|.|.+.|..|.....+.+.+...|.
T Consensus 455 ~~-----~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~ 497 (741)
T KOG3515|consen 455 AG-----AGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPH 497 (741)
T ss_pred cc-----ccccccceeeeccCCcceeeeccCCCceeeEEeeccccCCc
Confidence 11 11333556788999999999999999999888876665544
No 266
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=97.03 E-value=0.00059 Score=41.22 Aligned_cols=23 Identities=39% Similarity=0.710 Sum_probs=20.6
Q ss_pred EEEEeeeeccCCceeEEEecCce
Q psy16426 27 MTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 27 v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
++|.|.+.|.|.|.+.|++++..
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~ 23 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGE 23 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeE
Confidence 57999999999999999998764
No 267
>PHA02633 hypothetical protein; Provisional
Probab=97.03 E-value=0.0022 Score=37.54 Aligned_cols=39 Identities=23% Similarity=0.228 Sum_probs=33.5
Q ss_pred EEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEcccCC
Q psy16426 116 MKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKK 154 (194)
Q Consensus 116 ~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v~~~p 154 (194)
..|.|.++..+|+|.|.|...|..-....++.|.|....
T Consensus 18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 18 NNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred ccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 488999999999999999999987777788888886654
No 268
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.01 E-value=0.0011 Score=42.78 Aligned_cols=32 Identities=25% Similarity=0.474 Sum_probs=28.1
Q ss_pred CCeeeeeCCCcEEEEee-eeccCCceeEEEecC
Q psy16426 16 NQLVGAMEGDQMTLECH-SEAYPKSINYWTKEN 47 (194)
Q Consensus 16 ~~~~~v~~G~~v~L~C~-~~g~p~~~v~W~k~~ 47 (194)
.+.+.+.+|+.+.|.|. ..|.|.|.|.|+.++
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~ 42 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSD 42 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCC
Confidence 36788999999999997 689999999999754
No 269
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.00 E-value=0.0012 Score=44.00 Aligned_cols=45 Identities=18% Similarity=0.401 Sum_probs=30.9
Q ss_pred cccCCeEEEcC-CeeeeeCCCcEEEEeeeecc-C-CceeEEEecCceE
Q psy16426 6 QNVPPMIWIQN-QLVGAMEGDQMTLECHSEAY-P-KSINYWTKENGEI 50 (194)
Q Consensus 6 v~~~P~~~~~~-~~~~v~~G~~v~L~C~~~g~-p-~~~v~W~k~~~~l 50 (194)
|+.+|...... ....+..|+.++|.|.+.|. | ..+++|++|+..+
T Consensus 2 v~~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~ 49 (111)
T cd05772 2 VRAKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNEL 49 (111)
T ss_pred cccCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEEC
Confidence 44455543333 23345678899999999985 5 3689999988764
No 270
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.98 E-value=0.0018 Score=41.88 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=26.8
Q ss_pred eeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 19 VGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 19 ~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
+.+.+|++|+|.|.+.+.+.+.+.|++++..
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k 32 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQI 32 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcE
Confidence 4678899999999999988999999987643
No 271
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.98 E-value=0.0015 Score=43.38 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=29.0
Q ss_pred EEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecC
Q psy16426 13 WIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKEN 47 (194)
Q Consensus 13 ~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~ 47 (194)
.+.|..+.+.+|++|+|.|.+.+ +...+.||+..
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~ 35 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQD 35 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEEC
Confidence 45677789999999999999987 67789999964
No 272
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.97 E-value=0.00065 Score=41.71 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=20.4
Q ss_pred EEEEeeeeccCCceeEEEecCce
Q psy16426 27 MTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 27 v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
++|.|.+.|.|.|.++|++++..
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~ 23 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGT 23 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCc
Confidence 47999999999999999998753
No 273
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=96.97 E-value=0.0018 Score=41.70 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=27.2
Q ss_pred CeeeeeCCCcEEEEeeeeccCCceeEEEecCc
Q psy16426 17 QLVGAMEGDQMTLECHSEAYPKSINYWTKENG 48 (194)
Q Consensus 17 ~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~ 48 (194)
.++.+.+|++++|.|.+.+.+.+.+.|++.++
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~ 36 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQ 36 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCC
Confidence 56788999999999999888888999997443
No 274
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.95 E-value=0.015 Score=37.54 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=28.9
Q ss_pred CCeEEEcCCeeeeeCCCcEEEEeeeecc-C-CceeEEEecCceE
Q psy16426 9 PPMIWIQNQLVGAMEGDQMTLECHSEAY-P-KSINYWTKENGEI 50 (194)
Q Consensus 9 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~-p-~~~v~W~k~~~~l 50 (194)
||.+.+.... ....|..++|.|.+.|. | ...++|++||..+
T Consensus 1 ~P~V~v~~~~-~~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~ 43 (94)
T cd05767 1 PPEVTVFSLK-PVELGEPNTLICFVDNFFPPVLNVTWLKNGVPV 43 (94)
T ss_pred CCEEEEEeCC-cccCCCCeEEEEEEEEEECCcCEEEEEECCeEc
Confidence 5666655542 23446778999999994 4 4588999987654
No 275
>PHA03376 BARF1; Provisional
Probab=96.94 E-value=0.015 Score=42.12 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=22.4
Q ss_pred eeeeeCCCcEEEEeeeecc---CCceeEEEec
Q psy16426 18 LVGAMEGDQMTLECHSEAY---PKSINYWTKE 46 (194)
Q Consensus 18 ~~~v~~G~~v~L~C~~~g~---p~~~v~W~k~ 46 (194)
.+....|+++.|+|..... +.-.|.|+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs 51 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKL 51 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEec
Confidence 5677889999999997632 3457899994
No 276
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=96.94 E-value=0.00069 Score=40.86 Aligned_cols=23 Identities=30% Similarity=0.720 Sum_probs=20.5
Q ss_pred EEEEeeeeccCCceeEEEecCce
Q psy16426 27 MTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 27 v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
++|.|.+.|.|.|.+.|+++++.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~ 23 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGE 23 (69)
T ss_pred CEEEEECccCCCCEEEEEECCcc
Confidence 57999999999999999998654
No 277
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=96.89 E-value=0.00092 Score=41.71 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=19.7
Q ss_pred EEeeeeccCCceeEEEecCceE
Q psy16426 29 LECHSEAYPKSINYWTKENGEI 50 (194)
Q Consensus 29 L~C~~~g~p~~~v~W~k~~~~l 50 (194)
|.|.+.|+|.|+|+||+++..+
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l 24 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAIL 24 (79)
T ss_pred EEEEEeEeCCCceEEEECCEEC
Confidence 7899999999999999988654
No 278
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=96.86 E-value=0.0013 Score=41.13 Aligned_cols=25 Identities=24% Similarity=0.559 Sum_probs=21.0
Q ss_pred cEEEEeeeec-cCCceeEEEecCceE
Q psy16426 26 QMTLECHSEA-YPKSINYWTKENGEI 50 (194)
Q Consensus 26 ~v~L~C~~~g-~p~~~v~W~k~~~~l 50 (194)
.++|+|...+ .|+++|+||+++.++
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l 26 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKEL 26 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEEC
Confidence 4789999654 799999999998765
No 279
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.85 E-value=0.0022 Score=42.27 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=29.5
Q ss_pred EEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecC
Q psy16426 13 WIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKEN 47 (194)
Q Consensus 13 ~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~ 47 (194)
...+..+.+.+|++|+|.|.+.+.+...+.||+..
T Consensus 2 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~ 36 (109)
T cd04983 2 TQSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQY 36 (109)
T ss_pred eecCCceEEcCCCCEEEEEEECCCCccEEEEEEEC
Confidence 35667788999999999999987777899999853
No 280
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=96.77 E-value=0.0012 Score=40.31 Aligned_cols=24 Identities=29% Similarity=0.714 Sum_probs=20.7
Q ss_pred EEEEeeeec-cCCceeEEEecCceE
Q psy16426 27 MTLECHSEA-YPKSINYWTKENGEI 50 (194)
Q Consensus 27 v~L~C~~~g-~p~~~v~W~k~~~~l 50 (194)
+.|.|.+.| .|.|.+.|++++..+
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l 25 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKEL 25 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeec
Confidence 479999999 899999999987653
No 281
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.77 E-value=0.019 Score=37.01 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=23.4
Q ss_pred eCCCcEEEEeeeecc-CC-ceeEEEecCceE
Q psy16426 22 MEGDQMTLECHSEAY-PK-SINYWTKENGEI 50 (194)
Q Consensus 22 ~~G~~v~L~C~~~g~-p~-~~v~W~k~~~~l 50 (194)
.+|+.++|.|.+.|. |. ..++|++|+..+
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~ 42 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEE 42 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeec
Confidence 468999999999994 44 488999987653
No 282
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.73 E-value=0.041 Score=36.71 Aligned_cols=22 Identities=14% Similarity=0.391 Sum_probs=19.1
Q ss_pred EEEEEEeecCCCCCeEEEEEEE
Q psy16426 115 HMKLTIKAVTKQDFGAYKCVSK 136 (194)
Q Consensus 115 ~~~L~i~~~~~~d~g~y~C~a~ 136 (194)
..+|.|.+++.+|.+.|.|...
T Consensus 73 tv~L~l~~L~a~DTa~Y~Ca~e 94 (115)
T cd05721 73 QVNFTLQNLRANQTDIYFCKIE 94 (115)
T ss_pred EEEEEEcCCCHHHCeEEEEEee
Confidence 4589999999999999999653
No 283
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=96.73 E-value=0.0024 Score=40.33 Aligned_cols=26 Identities=27% Similarity=0.604 Sum_probs=21.5
Q ss_pred CcEEEEeeeeccCCc--eeEEEecCceE
Q psy16426 25 DQMTLECHSEAYPKS--INYWTKENGEI 50 (194)
Q Consensus 25 ~~v~L~C~~~g~p~~--~v~W~k~~~~l 50 (194)
++++|.|.+.|.|.| .+.|++++..+
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i 28 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPI 28 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEc
Confidence 478999999999877 68999987543
No 284
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.72 E-value=0.0024 Score=41.74 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=30.9
Q ss_pred CCeEEEcCC-eeeeeCCCcEEEEeeeecc-C-CceeEEEecCceE
Q psy16426 9 PPMIWIQNQ-LVGAMEGDQMTLECHSEAY-P-KSINYWTKENGEI 50 (194)
Q Consensus 9 ~P~~~~~~~-~~~v~~G~~v~L~C~~~g~-p-~~~v~W~k~~~~l 50 (194)
||.+.+.+. ......++.++|.|.+.|. | ...|.|++|+..+
T Consensus 1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~ 45 (100)
T cd07699 1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATV 45 (100)
T ss_pred CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEEC
Confidence 566665553 3345578889999999984 4 5689999988654
No 285
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=96.72 E-value=0.0028 Score=37.35 Aligned_cols=26 Identities=27% Similarity=0.595 Sum_probs=22.9
Q ss_pred CCcEEEEeee-eccCCceeEEEecCce
Q psy16426 24 GDQMTLECHS-EAYPKSINYWTKENGE 49 (194)
Q Consensus 24 G~~v~L~C~~-~g~p~~~v~W~k~~~~ 49 (194)
|++++|.|.+ .+.+...++|++++..
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~ 27 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQS 27 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTT
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCcc
Confidence 7899999999 7778889999998764
No 286
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=96.70 E-value=0.0015 Score=40.14 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=20.8
Q ss_pred EEEEeeeeccCCceeEEEecCceE
Q psy16426 27 MTLECHSEAYPKSINYWTKENGEI 50 (194)
Q Consensus 27 v~L~C~~~g~p~~~v~W~k~~~~l 50 (194)
+.|.|.+.|.|.|.+.|++++..+
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l 24 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDI 24 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEEC
Confidence 479999999999999999987653
No 287
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=96.68 E-value=0.0017 Score=40.70 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=20.1
Q ss_pred EEEeeeeccCCceeEEEecCceE
Q psy16426 28 TLECHSEAYPKSINYWTKENGEI 50 (194)
Q Consensus 28 ~L~C~~~g~p~~~v~W~k~~~~l 50 (194)
.|.|.+.|.|.|.|+||+++..+
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i 24 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVL 24 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEEC
Confidence 47899999999999999987653
No 288
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=96.67 E-value=0.0025 Score=41.29 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=27.4
Q ss_pred CeeeeeCCCcEEEEee-eeccCCceeEEEecCce
Q psy16426 17 QLVGAMEGDQMTLECH-SEAYPKSINYWTKENGE 49 (194)
Q Consensus 17 ~~~~v~~G~~v~L~C~-~~g~p~~~v~W~k~~~~ 49 (194)
..+.+.+|+.+.|.|. ..|.|.+.|.|++++..
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~ 44 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFP 44 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcc
Confidence 4567889999999998 45679999999998643
No 289
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=96.66 E-value=0.0015 Score=40.52 Aligned_cols=22 Identities=36% Similarity=0.889 Sum_probs=19.7
Q ss_pred EEEEeeeeccCCceeEEEecCc
Q psy16426 27 MTLECHSEAYPKSINYWTKENG 48 (194)
Q Consensus 27 v~L~C~~~g~p~~~v~W~k~~~ 48 (194)
|+|.|.+.|.|.|.+.|+++++
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~ 22 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKG 22 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCC
Confidence 5799999999999999999754
No 290
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.64 E-value=0.028 Score=36.47 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=46.3
Q ss_pred eeEEeeCCeEEE-EEEe-eccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCC
Q psy16426 64 LVGAMEGDQMTL-ECHS-EAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140 (194)
Q Consensus 64 ~~~~~~g~~~~l-~C~~-~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g 140 (194)
...+.+|+.+.+ .|.+ .+.|.+.+.|+.+...... ... ....++.+...+.+.+......|.-.++|.+....-
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~--~~~-~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE--SHS-QEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc--eee-ecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 444567777777 7875 4567888999974222211 111 122334555667777776666677799999987643
No 291
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=96.64 E-value=0.0033 Score=39.51 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=21.4
Q ss_pred CcEEEEeeeeccCCc--eeEEEecCceE
Q psy16426 25 DQMTLECHSEAYPKS--INYWTKENGEI 50 (194)
Q Consensus 25 ~~v~L~C~~~g~p~~--~v~W~k~~~~l 50 (194)
++++|.|.+.|.|.+ .+.|++++..+
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i 28 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPI 28 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEe
Confidence 478999999998877 67999987653
No 292
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=96.59 E-value=0.0031 Score=39.36 Aligned_cols=24 Identities=17% Similarity=0.462 Sum_probs=20.2
Q ss_pred cEEEEeeeec-cCCceeEEEecCce
Q psy16426 26 QMTLECHSEA-YPKSINYWTKENGE 49 (194)
Q Consensus 26 ~v~L~C~~~g-~p~~~v~W~k~~~~ 49 (194)
.++|.|.+.| .|.+.|+|++++..
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~ 25 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEV 25 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEE
Confidence 3789999987 68889999998764
No 293
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=96.56 E-value=0.0053 Score=39.26 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=31.1
Q ss_pred CCeEEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 9 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
.|.+...++ ..|.+|++|+|+|... .+...+.|++++..
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~ 40 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGST 40 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCC
Confidence 577887775 4678999999999886 45778899998764
No 294
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=96.51 E-value=0.003 Score=39.66 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=22.8
Q ss_pred CCcEEEEeeeecc--CCceeEEEecCce
Q psy16426 24 GDQMTLECHSEAY--PKSINYWTKENGE 49 (194)
Q Consensus 24 G~~v~L~C~~~g~--p~~~v~W~k~~~~ 49 (194)
|++++|.|.+.+. |.+.+.|++++..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~ 28 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKK 28 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcc
Confidence 7899999999998 8889999987653
No 295
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.50 E-value=0.0041 Score=41.55 Aligned_cols=34 Identities=12% Similarity=0.362 Sum_probs=28.0
Q ss_pred EcCCeeeeeCCCcEEEEeeeec--cCCceeEEEecC
Q psy16426 14 IQNQLVGAMEGDQMTLECHSEA--YPKSINYWTKEN 47 (194)
Q Consensus 14 ~~~~~~~v~~G~~v~L~C~~~g--~p~~~v~W~k~~ 47 (194)
+.+..+.+.+|++|+|.|.+.+ .+...+.||+..
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~ 38 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQK 38 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEEC
Confidence 4566778899999999999877 567789999953
No 296
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.45 E-value=0.014 Score=35.02 Aligned_cols=60 Identities=18% Similarity=0.437 Sum_probs=39.1
Q ss_pred CCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16426 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149 (194)
Q Consensus 70 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~ 149 (194)
...+.|.|.+ ..++.|+. +....... ..+|.+.....+-.|.|.|.+.+ .....++.++
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~--------------~~tlnLGs~~~DPRG~Y~C~~s~--~~~~~~LQVy 64 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEVS--------------NTLLDLGSRINDPRGTYSCKESE--PNKEKTLQVY 64 (69)
T ss_pred CceEEEEecC----CCcEEEec-Cccccccc--------------ccEEeccCcccCCCcceEecCcc--CCCcEEEEEE
Confidence 3468899965 24589998 55443221 13677777778889999999877 2234455555
Q ss_pred c
Q psy16426 150 G 150 (194)
Q Consensus 150 v 150 (194)
+
T Consensus 65 Y 65 (69)
T cd07691 65 Y 65 (69)
T ss_pred E
Confidence 4
No 297
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=96.44 E-value=0.0073 Score=38.91 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=30.1
Q ss_pred CCeEEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 9 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
.|.+...+. ..|.+|++|+|.|.... ....+.||+++..
T Consensus 1 kP~l~a~p~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~ 39 (94)
T cd05711 1 KPFLSAHPS-PVVPSGENVTLQCHSDI-RFDRFILYKEGRS 39 (94)
T ss_pred CCEEEecCC-CccCCCCeEEEEEecCC-CCCEEEEEECCCC
Confidence 477877665 45779999999998765 4567899997754
No 298
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.42 E-value=0.024 Score=33.72 Aligned_cols=52 Identities=19% Similarity=0.382 Sum_probs=32.2
Q ss_pred eeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcC
Q psy16426 68 MEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNS 138 (194)
Q Consensus 68 ~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~ 138 (194)
..|..|.|+|...+ ..+.|.+++ ....... ..+.+.+.. ++.|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~~~---~~i~W~~n~-~~~~g~~--------------~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSG---DDIKWKKND-QVSQGSD--------------EKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCC---CCceEEeCC-ccCCCCC--------------ceEEeeccC-CCCceEEEEeCCC
Confidence 57899999997543 238999844 3222110 122333333 7899999998654
No 299
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.40 E-value=0.02 Score=37.07 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=38.3
Q ss_pred EeeCCeEEEEEEeeccC-C--CccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCe-EEEEEEEcCC
Q psy16426 67 AMEGDQMTLECHSEAYP-K--SINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFG-AYKCVSKNSL 139 (194)
Q Consensus 67 ~~~g~~~~l~C~~~~~p-~--p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g-~y~C~a~n~~ 139 (194)
..+|..+++.|.+.+.. . ..+.|++ +................+.....+.++|... .+|.| +|+|.|.-..
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~Llk-G~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l 86 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLK-GETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHI 86 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEec-CcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEee
Confidence 36899999999987643 2 3467887 4433322211100000010111245666665 55555 9999987543
No 300
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=96.36 E-value=0.0052 Score=38.56 Aligned_cols=26 Identities=31% Similarity=0.585 Sum_probs=21.1
Q ss_pred cEEEEeeeec-cCCceeEEEecCceEE
Q psy16426 26 QMTLECHSEA-YPKSINYWTKENGEII 51 (194)
Q Consensus 26 ~v~L~C~~~g-~p~~~v~W~k~~~~l~ 51 (194)
.+.|.|.+.| .|.+.|+||+++.++.
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~ 27 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGNKELT 27 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECCEECc
Confidence 3789999877 5888999999886653
No 301
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=96.34 E-value=0.0097 Score=38.48 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=27.8
Q ss_pred CeeeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 17 QLVGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 17 ~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
+++.+.+|++++|+|.+.+.....+.|++-+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~ 37 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQ 37 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCc
Confidence 568899999999999999877778899976643
No 302
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=96.32 E-value=0.0061 Score=38.34 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.6
Q ss_pred CCcEEEEeeeeccCCceeEEEecCc
Q psy16426 24 GDQMTLECHSEAYPKSINYWTKENG 48 (194)
Q Consensus 24 G~~v~L~C~~~g~p~~~v~W~k~~~ 48 (194)
|++++|+|.+.+.|.+.+.|++.++
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~ 25 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGK 25 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCc
Confidence 7899999999999999999998654
No 303
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=96.21 E-value=0.0082 Score=38.45 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=23.7
Q ss_pred eeeeeCCCcEEEEeeeeccCCceeEEEec
Q psy16426 18 LVGAMEGDQMTLECHSEAYPKSINYWTKE 46 (194)
Q Consensus 18 ~~~v~~G~~v~L~C~~~g~p~~~v~W~k~ 46 (194)
.+.+.+|++++|.|.. +.|.+.++||+.
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq 32 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQ 32 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEE
Confidence 3567899999999996 478899999984
No 304
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.18 E-value=0.0085 Score=40.20 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=30.3
Q ss_pred CCeEEEcC-CeeeeeCCCcEEEEeeeecc-CC-ceeEEEecCceE
Q psy16426 9 PPMIWIQN-QLVGAMEGDQMTLECHSEAY-PK-SINYWTKENGEI 50 (194)
Q Consensus 9 ~P~~~~~~-~~~~v~~G~~v~L~C~~~g~-p~-~~v~W~k~~~~l 50 (194)
+|.+.+.+ ....+.+++.++|.|.+.|. |. ..|.|++|+..+
T Consensus 2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l 46 (115)
T cd05769 2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEV 46 (115)
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEEC
Confidence 56666554 33445567889999999995 44 489999988654
No 305
>smart00409 IG Immunoglobulin.
Probab=96.17 E-value=0.013 Score=35.71 Aligned_cols=30 Identities=30% Similarity=0.530 Sum_probs=26.3
Q ss_pred CeeeeeCCCcEEEEeeeeccCCceeEEEec
Q psy16426 17 QLVGAMEGDQMTLECHSEAYPKSINYWTKE 46 (194)
Q Consensus 17 ~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~ 46 (194)
..+.+..|++++|.|.+.+.+.+.+.|+++
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~ 31 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQ 31 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEEC
Confidence 346678899999999999888889999997
No 306
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=96.17 E-value=0.013 Score=35.71 Aligned_cols=30 Identities=30% Similarity=0.530 Sum_probs=26.3
Q ss_pred CeeeeeCCCcEEEEeeeeccCCceeEEEec
Q psy16426 17 QLVGAMEGDQMTLECHSEAYPKSINYWTKE 46 (194)
Q Consensus 17 ~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~ 46 (194)
..+.+..|++++|.|.+.+.+.+.+.|+++
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~ 31 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQ 31 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEEC
Confidence 346678899999999999888889999997
No 307
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=96.16 E-value=0.0069 Score=38.73 Aligned_cols=29 Identities=28% Similarity=0.637 Sum_probs=24.1
Q ss_pred eCCCcEEEEeeeecc-C-CceeEEEecCceE
Q psy16426 22 MEGDQMTLECHSEAY-P-KSINYWTKENGEI 50 (194)
Q Consensus 22 ~~G~~v~L~C~~~g~-p-~~~v~W~k~~~~l 50 (194)
..|+.++|.|.+.|. | .+.++|++++..+
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~ 41 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKEL 41 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEEC
Confidence 468999999999997 5 4689999987654
No 308
>KOG1480|consensus
Probab=96.13 E-value=0.0025 Score=54.84 Aligned_cols=136 Identities=16% Similarity=0.264 Sum_probs=81.9
Q ss_pred CCeEEEcCCeeeeeCCCcEEEEeeeeccCC----ceeEEEecCceEE---------------------------------
Q psy16426 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPK----SINYWTKENGEII--------------------------------- 51 (194)
Q Consensus 9 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~----~~v~W~k~~~~l~--------------------------------- 51 (194)
-|.|+..+.+..+.-|..+.|.|.+...+. +.-.|........
T Consensus 24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~ 103 (909)
T KOG1480|consen 24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDY 103 (909)
T ss_pred cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccce
Confidence 367777888888899999999998875432 2334655322111
Q ss_pred -----------E-ee----------CCeEEeccceeEEeeCCeEEEEEE-eeccCCCccEEEecCcEEeeCCCceeEEec
Q psy16426 52 -----------A-QV----------PPMIWIQNQLVGAMEGDQMTLECH-SEAYPKSINYWTKENGEIIAQGSKYEPILL 108 (194)
Q Consensus 52 -----------v-~~----------~p~i~~~~~~~~~~~g~~~~l~C~-~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~ 108 (194)
+ .. .-.+...+....+..+..+.+.|. ..+.|...+.|++ ++.......+.. ...
T Consensus 104 ~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k-~e~~~~pd~n~~-~~~ 181 (909)
T KOG1480|consen 104 WCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLK-NEVVIDPDANVI-RAS 181 (909)
T ss_pred eeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccc-cCCCCCccccch-hhh
Confidence 0 00 000111222333555666666664 4455666788998 444444322221 111
Q ss_pred CCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceE---EEEEEEccc
Q psy16426 109 DNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTD---GSIKLYGKK 152 (194)
Q Consensus 109 ~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~---~~~~l~v~~ 152 (194)
...+.+..+...|.|+|+|.+.|.++... ..+.++|..
T Consensus 182 ------d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv~g 222 (909)
T KOG1480|consen 182 ------DHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYVNG 222 (909)
T ss_pred ------cCCccccchhhhhcccceeeeehhhccccccceEEEEEEcC
Confidence 34788899999999999999999887654 456666654
No 309
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=96.10 E-value=0.0086 Score=37.46 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=20.6
Q ss_pred cEEEEeeeec-cCCceeEEEecCceE
Q psy16426 26 QMTLECHSEA-YPKSINYWTKENGEI 50 (194)
Q Consensus 26 ~v~L~C~~~g-~p~~~v~W~k~~~~l 50 (194)
.++|.|.+.+ .|.+.|.|++++..+
T Consensus 1 ~~~L~C~~~~~~P~~~v~W~~~~~~l 26 (82)
T cd05761 1 EVELTCTSSGSKPAATIRWFKGDKEL 26 (82)
T ss_pred CEEEEEEecCcCcCCeEEEEECCEEc
Confidence 3789999877 488899999987654
No 310
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.05 E-value=0.01 Score=38.50 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=27.2
Q ss_pred EcCCeeeeeCCCcEEEEeeeecc--C-CceeEEEecCce
Q psy16426 14 IQNQLVGAMEGDQMTLECHSEAY--P-KSINYWTKENGE 49 (194)
Q Consensus 14 ~~~~~~~v~~G~~v~L~C~~~g~--p-~~~v~W~k~~~~ 49 (194)
+.|....+..|+.++|.|.+.|. | ...|+|+++++.
T Consensus 4 ~pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~ 42 (96)
T cd07696 4 LPPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGE 42 (96)
T ss_pred cCcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeE
Confidence 34444566679999999999997 3 347899998754
No 311
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.02 E-value=0.018 Score=37.07 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=28.4
Q ss_pred CCeEEEcCCeeeeeCCCcEEEEeeeecc-C-CceeEEEecCceE
Q psy16426 9 PPMIWIQNQLVGAMEGDQMTLECHSEAY-P-KSINYWTKENGEI 50 (194)
Q Consensus 9 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~-p-~~~v~W~k~~~~l 50 (194)
||.+.+.... .+..|...+|.|.+.|. | ...++|++||..+
T Consensus 1 pP~v~v~~~~-~~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~ 43 (93)
T cd05770 1 TPKVQVYSRF-PAENGKPNVLNCYVTGFHPPDIEIRLLKNGVKI 43 (93)
T ss_pred CCEEEEEecC-CCcCCCceEEEEEEEEEeCCCCEEEEEECCEEC
Confidence 5666665432 23457778999999995 4 4578999988653
No 312
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.01 E-value=0.016 Score=38.73 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=28.0
Q ss_pred EEEcCCeeeeeCCCcEEEEeeeecc-CCceeEEEec
Q psy16426 12 IWIQNQLVGAMEGDQMTLECHSEAY-PKSINYWTKE 46 (194)
Q Consensus 12 ~~~~~~~~~v~~G~~v~L~C~~~g~-p~~~v~W~k~ 46 (194)
+.+.+..+.+.+|++|+|.|..... ....+.||+.
T Consensus 2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq 37 (116)
T cd07706 2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQ 37 (116)
T ss_pred cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence 4566777889999999999997753 4567999984
No 313
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.88 E-value=0.015 Score=38.17 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=23.9
Q ss_pred eeeeCCCcEEEEeeeecc-CC-ceeEEEecCce
Q psy16426 19 VGAMEGDQMTLECHSEAY-PK-SINYWTKENGE 49 (194)
Q Consensus 19 ~~v~~G~~v~L~C~~~g~-p~-~~v~W~k~~~~ 49 (194)
..+..|+.++|.|.+.|. |. ..++|++++..
T Consensus 11 ~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~ 43 (102)
T cd05768 11 EELSLQETATLTCLVKGFSPSDIFVKWLQNGQP 43 (102)
T ss_pred HHhCcCCceEEEEEEeeEeCCCCEEEEEECCEE
Confidence 345568899999999995 43 47899998765
No 314
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=95.86 E-value=0.012 Score=37.05 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=20.3
Q ss_pred EEEEeeeec-cCCceeEEEecCceE
Q psy16426 27 MTLECHSEA-YPKSINYWTKENGEI 50 (194)
Q Consensus 27 v~L~C~~~g-~p~~~v~W~k~~~~l 50 (194)
++|.|.+.| +|.+.|+|++++..+
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l 26 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEI 26 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEEC
Confidence 689999988 577899999988764
No 315
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=95.80 E-value=0.0083 Score=36.75 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=18.6
Q ss_pred EEEEeeeec-cCCceeEEEecCce
Q psy16426 27 MTLECHSEA-YPKSINYWTKENGE 49 (194)
Q Consensus 27 v~L~C~~~g-~p~~~v~W~k~~~~ 49 (194)
+.|+|.+.+ .|.+.+.||+++..
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~ 24 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKE 24 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcc
Confidence 479999874 67789999998764
No 316
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=95.77 E-value=0.014 Score=36.85 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=21.1
Q ss_pred CcEEEEeeeec--cCCceeEEEecCceE
Q psy16426 25 DQMTLECHSEA--YPKSINYWTKENGEI 50 (194)
Q Consensus 25 ~~v~L~C~~~g--~p~~~v~W~k~~~~l 50 (194)
+++.|.|.+.+ .+.+.+.|++|+..+
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i 28 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLI 28 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEEC
Confidence 47899999876 457899999988654
No 317
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=95.70 E-value=0.015 Score=36.74 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=27.3
Q ss_pred CeeeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 17 QLVGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 17 ~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
....+.+|+++.|.|...+. .+.+.|++++..
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~ 35 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTP 35 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcc
Confidence 45688999999999999875 669999998875
No 318
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=95.69 E-value=0.13 Score=31.45 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=19.3
Q ss_pred cEEEEeeeecc-CC-ceeEEEecCce
Q psy16426 26 QMTLECHSEAY-PK-SINYWTKENGE 49 (194)
Q Consensus 26 ~v~L~C~~~g~-p~-~~v~W~k~~~~ 49 (194)
.++|.|.+.|. |. ..+.|++|+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~ 26 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQE 26 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEE
Confidence 37899999996 44 58999998764
No 319
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=95.65 E-value=0.01 Score=38.12 Aligned_cols=32 Identities=9% Similarity=-0.020 Sum_probs=25.6
Q ss_pred eeeeeCCCcEEEEeeeecc-----CCceeEEEecCce
Q psy16426 18 LVGAMEGDQMTLECHSEAY-----PKSINYWTKENGE 49 (194)
Q Consensus 18 ~~~v~~G~~v~L~C~~~g~-----p~~~v~W~k~~~~ 49 (194)
.+.+.+|.++.|.|...+. |.|.+.||+++..
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~ 40 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKL 40 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEE
Confidence 3567889999999987542 5779999998865
No 320
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=95.62 E-value=0.016 Score=36.39 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=20.3
Q ss_pred EEEEeeeecc-CCceeEEEecCceE
Q psy16426 27 MTLECHSEAY-PKSINYWTKENGEI 50 (194)
Q Consensus 27 v~L~C~~~g~-p~~~v~W~k~~~~l 50 (194)
++|.|.+.|. |.+.|+|++++..+
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l 26 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQEL 26 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEEC
Confidence 6899999884 88899999988654
No 321
>PHA03270 envelope glycoprotein C; Provisional
Probab=95.60 E-value=0.16 Score=41.31 Aligned_cols=43 Identities=21% Similarity=0.461 Sum_probs=33.2
Q ss_pred cccCCeEEEcCCeeeeeCCCcEEEEeeeecc-CC--ceeEEEecCceE
Q psy16426 6 QNVPPMIWIQNQLVGAMEGDQMTLECHSEAY-PK--SINYWTKENGEI 50 (194)
Q Consensus 6 v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~-p~--~~v~W~k~~~~l 50 (194)
.+.+|.+++.+. .+.+|+...-.|.+..+ |. ..+.||.|+...
T Consensus 218 ~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V 263 (466)
T PHA03270 218 MFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEV 263 (466)
T ss_pred EecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCccc
Confidence 357888877774 56789999999998875 32 368899988765
No 322
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=95.48 E-value=0.045 Score=35.72 Aligned_cols=37 Identities=24% Similarity=0.439 Sum_probs=29.7
Q ss_pred eEEEcCCeeeeeCCCcEEEEeeee-ccCCceeEEEecC
Q psy16426 11 MIWIQNQLVGAMEGDQMTLECHSE-AYPKSINYWTKEN 47 (194)
Q Consensus 11 ~~~~~~~~~~v~~G~~v~L~C~~~-g~p~~~v~W~k~~ 47 (194)
.++..+..+.+.+|+++.|.|... ......+.|++..
T Consensus 3 ~vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~ 40 (114)
T PF07686_consen 3 QVTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQS 40 (114)
T ss_dssp EEEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEE
T ss_pred eEEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEEC
Confidence 345567788999999999999988 4556789999943
No 323
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.46 E-value=0.045 Score=35.35 Aligned_cols=40 Identities=18% Similarity=0.423 Sum_probs=26.5
Q ss_pred CeEEEcCCeeeeeCCCcEEEEeeeecc-C-CceeEEEecCce
Q psy16426 10 PMIWIQNQLVGAMEGDQMTLECHSEAY-P-KSINYWTKENGE 49 (194)
Q Consensus 10 P~~~~~~~~~~v~~G~~v~L~C~~~g~-p-~~~v~W~k~~~~ 49 (194)
|.+...+....-..++.++|.|.+.|. | ...|+|++|+..
T Consensus 2 P~v~~l~~~~~~~~~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 2 PTVFPLVPCCSSSSSDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CeEEEeCCCccccCCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 444433332333356779999999995 3 357899998764
No 324
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.41 E-value=0.023 Score=38.79 Aligned_cols=82 Identities=16% Similarity=0.279 Sum_probs=43.7
Q ss_pred eCCeEEEEEEeeccC-----CCccEEEecCcEEeeC-CCceeEE-------ecCCceeEEEEEEEeecCCCCCeEEEEEE
Q psy16426 69 EGDQMTLECHSEAYP-----KSINYWTKENGEIIAQ-GSKYEPI-------LLDNAYKIHMKLTIKAVTKQDFGAYKCVS 135 (194)
Q Consensus 69 ~g~~~~l~C~~~~~p-----~p~v~W~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~L~i~~~~~~d~g~y~C~a 135 (194)
-.+++.|.|.+.... .-.+.|..++..+... +...... ....-..+.++|.+.....- .|+|+|.+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 467899999886522 2346798845443321 1111100 00111123567887775444 89999999
Q ss_pred EcCCCceEEEEEEEcc
Q psy16426 136 KNSLGDTDGSIKLYGK 151 (194)
Q Consensus 136 ~n~~g~~~~~~~l~v~ 151 (194)
..........+.|.+.
T Consensus 105 t~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 105 TELSREGETTIELKYR 120 (130)
T ss_dssp EETTEEEEEEEEEEE-
T ss_pred EecCCCceEEEEEEEE
Confidence 9988888888888763
No 325
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=95.39 E-value=0.035 Score=36.24 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=28.7
Q ss_pred CeeeeeCCCcEEEEeeeeccCCce-eEEEecCce
Q psy16426 17 QLVGAMEGDQMTLECHSEAYPKSI-NYWTKENGE 49 (194)
Q Consensus 17 ~~~~v~~G~~v~L~C~~~g~p~~~-v~W~k~~~~ 49 (194)
..+.|.+|+++.|.|.+.++|.|. +.|.+++..
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~ 44 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRT 44 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcc
Confidence 456789999999999999999997 999987653
No 326
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=95.35 E-value=0.027 Score=36.56 Aligned_cols=28 Identities=21% Similarity=0.552 Sum_probs=23.8
Q ss_pred eeeCCCcEEEEeeeecc-CCceeEEEecC
Q psy16426 20 GAMEGDQMTLECHSEAY-PKSINYWTKEN 47 (194)
Q Consensus 20 ~v~~G~~v~L~C~~~g~-p~~~v~W~k~~ 47 (194)
.+.+|++++|.|.+.+. +...+.|++..
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~ 30 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQK 30 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEEC
Confidence 57899999999999876 67789999954
No 327
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=95.30 E-value=0.032 Score=35.99 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=25.1
Q ss_pred cCCeeeeeCCCcEEEEeeeecc-CC-ceeEEEecCce
Q psy16426 15 QNQLVGAMEGDQMTLECHSEAY-PK-SINYWTKENGE 49 (194)
Q Consensus 15 ~~~~~~v~~G~~v~L~C~~~g~-p~-~~v~W~k~~~~ 49 (194)
+|.......++.++|.|.+.|. |. ..|+|++++..
T Consensus 5 ~ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~ 41 (94)
T cd05847 5 HSSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQV 41 (94)
T ss_pred CcChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEE
Confidence 3444444456779999999994 43 68899998765
No 328
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.28 E-value=0.035 Score=42.20 Aligned_cols=50 Identities=22% Similarity=0.346 Sum_probs=38.1
Q ss_pred CCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCC
Q psy16426 83 PKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139 (194)
Q Consensus 83 p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~ 139 (194)
-.|...|..+++..+...+... +.+ .+.|.+.+...+++|.|+|.+....
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~n--IT~-----TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVN--ITE-----TGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEE--Ecc-----CceEEeeccccccCCceEEEEEEEe
Confidence 3688899998887776654443 232 2489999999999999999987654
No 329
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.16 E-value=0.027 Score=36.31 Aligned_cols=28 Identities=14% Similarity=0.427 Sum_probs=22.7
Q ss_pred eeeCCCcEEEEeeeecc--CCceeEEEecC
Q psy16426 20 GAMEGDQMTLECHSEAY--PKSINYWTKEN 47 (194)
Q Consensus 20 ~v~~G~~v~L~C~~~g~--p~~~v~W~k~~ 47 (194)
.+.+|++|+|.|...+. ....+.||+..
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~ 31 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQK 31 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEEC
Confidence 57889999999998765 45679999853
No 330
>KOG4597|consensus
Probab=95.08 E-value=0.03 Score=45.96 Aligned_cols=87 Identities=10% Similarity=0.066 Sum_probs=60.4
Q ss_pred cceeEEeeCCeEEEEEEeeccCCCccEEEec--Cc-EEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcC
Q psy16426 62 NQLVGAMEGDQMTLECHSEAYPKSINYWTKE--NG-EIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNS 138 (194)
Q Consensus 62 ~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~ 138 (194)
+....+-.+++.+++|-+.|.+.+.|+|... ++ ........+. ..-.......|.|-+....|.|.|+|.+.|.
T Consensus 203 pa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~---e~p~vtstcql~ic~ewq~~a~w~tCs~rcg 279 (560)
T KOG4597|consen 203 PAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTV---ENPVVTSTCQLVICNEWQADAGWYTCSARCG 279 (560)
T ss_pred cchhhcccchhhcccccccCCcCceeeeehhhccccceeecCcccc---CCcceeeeeeEEEcchhhcCCCceeeccccc
Confidence 3445567889999999999999999999632 22 2222211111 1111223458999999999999999999999
Q ss_pred CCceEEEEEEEcc
Q psy16426 139 LGDTDGSIKLYGK 151 (194)
Q Consensus 139 ~g~~~~~~~l~v~ 151 (194)
.|...+.+.+.+.
T Consensus 280 ~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 280 AGFLRRDVPCSSV 292 (560)
T ss_pred cceeeccceeeee
Confidence 9988887766543
No 331
>PHA03269 envelope glycoprotein C; Provisional
Probab=95.02 E-value=0.3 Score=40.49 Aligned_cols=44 Identities=25% Similarity=0.430 Sum_probs=33.3
Q ss_pred ccccCCeEEEcCCeeeeeCCCcEEEEeeeecc-C--CceeEEEecCceE
Q psy16426 5 GQNVPPMIWIQNQLVGAMEGDQMTLECHSEAY-P--KSINYWTKENGEI 50 (194)
Q Consensus 5 ~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~-p--~~~v~W~k~~~~l 50 (194)
..+.+|.+++.+. -+.+|+...-.|.+..+ | ...+.||.|++.+
T Consensus 325 ~~yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V 371 (566)
T PHA03269 325 MSYKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNI 371 (566)
T ss_pred EEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCccc
Confidence 3467787776664 66789999999998875 3 2378899997664
No 332
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=94.82 E-value=0.05 Score=35.78 Aligned_cols=28 Identities=14% Similarity=0.395 Sum_probs=22.3
Q ss_pred eeeCCCcEEEEeeeecc-CCceeEEEecC
Q psy16426 20 GAMEGDQMTLECHSEAY-PKSINYWTKEN 47 (194)
Q Consensus 20 ~v~~G~~v~L~C~~~g~-p~~~v~W~k~~ 47 (194)
.+++|++|+|.|.+.+. ....+.||+..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~ 30 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWR 30 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEEC
Confidence 57899999999998764 34579999853
No 333
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=94.74 E-value=0.062 Score=36.03 Aligned_cols=32 Identities=13% Similarity=0.339 Sum_probs=24.8
Q ss_pred cCCeeeeeCCCcEEEEeeeeccC--CceeEEEec
Q psy16426 15 QNQLVGAMEGDQMTLECHSEAYP--KSINYWTKE 46 (194)
Q Consensus 15 ~~~~~~v~~G~~v~L~C~~~g~p--~~~v~W~k~ 46 (194)
.|....+.+|++|+|.|...+.. ...+.||+-
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ 36 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQ 36 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEE
Confidence 45667889999999999876532 456899984
No 334
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=94.63 E-value=0.043 Score=36.14 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=25.5
Q ss_pred EcCCeeeeeCCCcEEEEeeeeccCCceeEEEecC
Q psy16426 14 IQNQLVGAMEGDQMTLECHSEAYPKSINYWTKEN 47 (194)
Q Consensus 14 ~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~ 47 (194)
+.+-+..+.+|++|.|.|.........++||++.
T Consensus 3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~ 36 (105)
T cd05774 3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGK 36 (105)
T ss_pred EeccCCcccCCCCEEEEecCCCCCceEEEEEcCC
Confidence 4455567889999999997654445589999953
No 335
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=94.56 E-value=0.048 Score=35.71 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=22.4
Q ss_pred eeeCCCcEEEEeeeeccCCceeEEEecC
Q psy16426 20 GAMEGDQMTLECHSEAYPKSINYWTKEN 47 (194)
Q Consensus 20 ~v~~G~~v~L~C~~~g~p~~~v~W~k~~ 47 (194)
.+.+|++|+|.|.........+.||+..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~ 29 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQP 29 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeC
Confidence 4678999999999866545679999954
No 336
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.55 E-value=0.066 Score=34.87 Aligned_cols=41 Identities=24% Similarity=0.509 Sum_probs=29.7
Q ss_pred CCeEEEc-CCeeeeeCCCcEEEEeeeecc--C-CceeEEEecCce
Q psy16426 9 PPMIWIQ-NQLVGAMEGDQMTLECHSEAY--P-KSINYWTKENGE 49 (194)
Q Consensus 9 ~P~~~~~-~~~~~v~~G~~v~L~C~~~g~--p-~~~v~W~k~~~~ 49 (194)
.|.+.+. |....+..+..++|.|.+.+. | ...|.|.++++.
T Consensus 3 ~PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 3 KPSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred CCEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 4665555 444456678999999999984 3 358999998764
No 337
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=94.45 E-value=0.069 Score=34.62 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=26.4
Q ss_pred CCeEEEcCCeeeeeCCCcEEEEeeeec-cCC--ceeEEEecCce
Q psy16426 9 PPMIWIQNQLVGAMEGDQMTLECHSEA-YPK--SINYWTKENGE 49 (194)
Q Consensus 9 ~P~~~~~~~~~~v~~G~~v~L~C~~~g-~p~--~~v~W~k~~~~ 49 (194)
+|.+...+ .+.+|..+++.|.+.+ .|. ..|.|++++..
T Consensus 3 ~p~i~~~~---~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~ 43 (99)
T cd07689 3 DPEILLSG---PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETL 43 (99)
T ss_pred CccCcccC---cccCCceEEEEEEecCcccCCceEEEEecCcce
Confidence 44444333 3478999999999886 344 68999985543
No 338
>PHA03042 CD47-like protein; Provisional
Probab=94.23 E-value=0.37 Score=36.94 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=45.7
Q ss_pred eeCCeEEEEEEeecc-----CCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCce
Q psy16426 68 MEGDQMTLECHSEAY-----PKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDT 142 (194)
Q Consensus 68 ~~g~~~~l~C~~~~~-----p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~ 142 (194)
.-.+++.+.|.+... ..-.+.|..++......... ..++|.+.-. ..-.|+|+|.+.+.....
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-----------n~aSL~~~f~-~~l~GNYTCEv~~l~n~g 96 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-----------NTSSLKFNFS-KNLSGNYTCEAINKFNKI 96 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-----------cceEEEEecc-ccCCCceeEEEeecccCc
Confidence 346788999987653 34567798854444332211 1246655543 345899999999877766
Q ss_pred EEEEEEEcc
Q psy16426 143 DGSIKLYGK 151 (194)
Q Consensus 143 ~~~~~l~v~ 151 (194)
...+.|...
T Consensus 97 k~~IeLk~~ 105 (286)
T PHA03042 97 KNTIELQYV 105 (286)
T ss_pred cEEEEEEEE
Confidence 777766654
No 339
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=94.11 E-value=0.13 Score=34.36 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=23.9
Q ss_pred cCCeeeeeCCCcEEEEeeeeccC----CceeEEEec
Q psy16426 15 QNQLVGAMEGDQMTLECHSEAYP----KSINYWTKE 46 (194)
Q Consensus 15 ~~~~~~v~~G~~v~L~C~~~g~p----~~~v~W~k~ 46 (194)
.|..+.+.+|++++|.|...... ...+.|++.
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~ 39 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQ 39 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEe
Confidence 35567788999999999876432 246999874
No 340
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=93.98 E-value=0.1 Score=33.82 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=23.8
Q ss_pred eeeeCCCcEEEEeeeecc-C-CceeEEEecCceE
Q psy16426 19 VGAMEGDQMTLECHSEAY-P-KSINYWTKENGEI 50 (194)
Q Consensus 19 ~~v~~G~~v~L~C~~~g~-p-~~~v~W~k~~~~l 50 (194)
..+..+..++|.|.+.|. | ...++|.+||..+
T Consensus 11 ~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~ 44 (96)
T cd07697 11 KEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPS 44 (96)
T ss_pred HHHccCCCEEEEEEEEEEeCCCeEEEEEECCEEC
Confidence 344456789999999994 4 4578999987653
No 341
>PHA03271 envelope glycoprotein C; Provisional
Probab=93.78 E-value=2.1 Score=35.04 Aligned_cols=74 Identities=8% Similarity=0.159 Sum_probs=41.4
Q ss_pred EeeCCeEEEEEEeeccCCC---ccEEEecCcEEeeCCCceeEE---ecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCC
Q psy16426 67 AMEGDQMTLECHSEAYPKS---INYWTKENGEIIAQGSKYEPI---LLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140 (194)
Q Consensus 67 ~~~g~~~~l~C~~~~~p~p---~v~W~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g 140 (194)
+..|+...-.|.+..+.+| .+.|+.++............. -....+...++|++.+......-+.+|.+.-...
T Consensus 257 VL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd 336 (490)
T PHA03271 257 VLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQG 336 (490)
T ss_pred cccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccC
Confidence 4689999999999887655 466999543332211111111 1112233445666655433334489999876544
No 342
>PHA03273 envelope glycoprotein C; Provisional
Probab=93.47 E-value=1.3 Score=36.70 Aligned_cols=42 Identities=19% Similarity=0.449 Sum_probs=32.8
Q ss_pred ccCCeEEEcCCeeeeeCCCcEEEEeeeecc-CC--ceeEEEecCceE
Q psy16426 7 NVPPMIWIQNQLVGAMEGDQMTLECHSEAY-PK--SINYWTKENGEI 50 (194)
Q Consensus 7 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~-p~--~~v~W~k~~~~l 50 (194)
+.+|.+.+.+. .+.+|+...-.|.+..+ |. ..+.||.|+...
T Consensus 235 yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V 279 (486)
T PHA03273 235 YNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEV 279 (486)
T ss_pred ecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCeec
Confidence 67888877774 66789999999998875 32 378899987654
No 343
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=93.45 E-value=0.2 Score=33.43 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=23.3
Q ss_pred cCCeeeeeCCCcEEEEeeeeccC----CceeEEEe
Q psy16426 15 QNQLVGAMEGDQMTLECHSEAYP----KSINYWTK 45 (194)
Q Consensus 15 ~~~~~~v~~G~~v~L~C~~~g~p----~~~v~W~k 45 (194)
.+..+.+.+|++++|.|.....+ ...+.|++
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~ 38 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNF 38 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEE
Confidence 34567889999999999976432 24699985
No 344
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=93.42 E-value=0.16 Score=34.01 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=24.1
Q ss_pred cCCeeeeeCCCcEEEEeeeeccC------CceeEEEecC
Q psy16426 15 QNQLVGAMEGDQMTLECHSEAYP------KSINYWTKEN 47 (194)
Q Consensus 15 ~~~~~~v~~G~~v~L~C~~~g~p------~~~v~W~k~~ 47 (194)
.|..+.+.+|++|+|.|...... ...+.||+..
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~ 43 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGH 43 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCC
Confidence 45667889999999999865321 3468999853
No 345
>PHA02982 hypothetical protein; Provisional
Probab=93.35 E-value=0.46 Score=35.11 Aligned_cols=77 Identities=22% Similarity=0.367 Sum_probs=46.8
Q ss_pred eEEeeCCeEEEEEEeeccC-CCccEEEecCcEEee-CCCceeEEec---------C----CceeEEEEEEEeecCCCCCe
Q psy16426 65 VGAMEGDQMTLECHSEAYP-KSINYWTKENGEIIA-QGSKYEPILL---------D----NAYKIHMKLTIKAVTKQDFG 129 (194)
Q Consensus 65 ~~~~~g~~~~l~C~~~~~p-~p~v~W~~~~~~~~~-~~~~~~~~~~---------~----~~~~~~~~L~i~~~~~~d~g 129 (194)
+....++++.|.|...... -.++.|+.+++-++. +......+.. + +-....++|+|..+..+..|
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 3455689999999854332 345679875554433 1110000000 0 00122579999999999999
Q ss_pred EEEEEEEcCCCc
Q psy16426 130 AYKCVSKNSLGD 141 (194)
Q Consensus 130 ~y~C~a~n~~g~ 141 (194)
-|+|.+....+.
T Consensus 114 CYtc~~ks~~~k 125 (251)
T PHA02982 114 CFTCEAKDAEGK 125 (251)
T ss_pred ceEEEEecCCCc
Confidence 999999886543
No 346
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=93.33 E-value=0.16 Score=32.98 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=23.5
Q ss_pred eeeeeCCCcEEE-Eeee-eccCCceeEEEec
Q psy16426 18 LVGAMEGDQMTL-ECHS-EAYPKSINYWTKE 46 (194)
Q Consensus 18 ~~~v~~G~~v~L-~C~~-~g~p~~~v~W~k~ 46 (194)
...+.+|..+.+ .|.+ .|.|++.|+|+.+
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~ 40 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETN 40 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCC
Confidence 345678888988 8884 5689999999986
No 347
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=93.29 E-value=0.15 Score=31.76 Aligned_cols=28 Identities=32% Similarity=0.641 Sum_probs=22.4
Q ss_pred CCCcEEEEeeeecc-CC-ceeEEEecCceE
Q psy16426 23 EGDQMTLECHSEAY-PK-SINYWTKENGEI 50 (194)
Q Consensus 23 ~G~~v~L~C~~~g~-p~-~~v~W~k~~~~l 50 (194)
.++.++|.|.+.+. |. ..|.|++++..+
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~ 36 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEV 36 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEE
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEecccee
Confidence 48999999999985 43 379999987653
No 348
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=93.14 E-value=0.23 Score=32.40 Aligned_cols=77 Identities=17% Similarity=0.298 Sum_probs=50.8
Q ss_pred EEeccceeEEeeCCeEEEEEEeeccC-CCccEEEecCc----EE-eeCC--------CceeEEecCCceeEEEEEEEeec
Q psy16426 58 IWIQNQLVGAMEGDQMTLECHSEAYP-KSINYWTKENG----EI-IAQG--------SKYEPILLDNAYKIHMKLTIKAV 123 (194)
Q Consensus 58 i~~~~~~~~~~~g~~~~l~C~~~~~p-~p~v~W~~~~~----~~-~~~~--------~~~~~~~~~~~~~~~~~L~i~~~ 123 (194)
+...+..+.+.+|+++.|.|.+.+.. ...++||+... .. .... .++... . ......|.|.++
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~-~---~~~~~~L~I~~~ 78 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGS-G---SGTDFTLTISRV 78 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEe-c---cCCEEEEEECCC
Confidence 34455667788999999999987654 56788997431 11 1100 122111 1 112457999999
Q ss_pred CCCCCeEEEEEEEcC
Q psy16426 124 TKQDFGAYKCVSKNS 138 (194)
Q Consensus 124 ~~~d~g~y~C~a~n~ 138 (194)
..+|+|.|.|.+.+.
T Consensus 79 ~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 79 EPEDAAVYYCQQYGT 93 (106)
T ss_pred ChHHCEEEEEEEeCC
Confidence 999999999998754
No 349
>PHA03271 envelope glycoprotein C; Provisional
Probab=92.92 E-value=1.3 Score=36.24 Aligned_cols=42 Identities=12% Similarity=0.338 Sum_probs=32.3
Q ss_pred ccCCeEEEcCCeeeeeCCCcEEEEeeeecc-CC--ceeEEEecCceE
Q psy16426 7 NVPPMIWIQNQLVGAMEGDQMTLECHSEAY-PK--SINYWTKENGEI 50 (194)
Q Consensus 7 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~-p~--~~v~W~k~~~~l 50 (194)
++||.+.+.+. .+.+|+...-.|.+..+ |+ ..+.||.||...
T Consensus 245 ~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V 289 (490)
T PHA03271 245 QRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIA 289 (490)
T ss_pred ecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCccc
Confidence 57888887775 56789999999998875 32 368899987543
No 350
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=92.77 E-value=0.22 Score=36.12 Aligned_cols=35 Identities=17% Similarity=0.386 Sum_probs=27.5
Q ss_pred CeeeeeCCCcEEEEeeee-ccCCceeEEEecCceEE
Q psy16426 17 QLVGAMEGDQMTLECHSE-AYPKSINYWTKENGEII 51 (194)
Q Consensus 17 ~~~~v~~G~~v~L~C~~~-g~p~~~v~W~k~~~~l~ 51 (194)
..+.|.+|++|+|.|... +...+.+.|++.+..+.
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~Ia 58 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIA 58 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEE
Confidence 356789999999999974 55677899999755443
No 351
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=92.51 E-value=0.13 Score=32.50 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=20.9
Q ss_pred CCcEEEEeeeeccCCceeEEEecCc
Q psy16426 24 GDQMTLECHSEAYPKSINYWTKENG 48 (194)
Q Consensus 24 G~~v~L~C~~~g~p~~~v~W~k~~~ 48 (194)
|++|+|.|.........+.|+++..
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~ 25 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKD 25 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCC
Confidence 8999999998776667899999754
No 352
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=92.30 E-value=0.19 Score=32.25 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=22.7
Q ss_pred eeeeCCCcEEEEeeeec-cCCceeEEEecC
Q psy16426 19 VGAMEGDQMTLECHSEA-YPKSINYWTKEN 47 (194)
Q Consensus 19 ~~v~~G~~v~L~C~~~g-~p~~~v~W~k~~ 47 (194)
+.+.+|++|+|.|.... .....+.|++..
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~ 31 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWG 31 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCC
Confidence 46789999999999765 345678999854
No 353
>PHA03189 UL14 tegument protein; Provisional
Probab=92.18 E-value=2.4 Score=33.22 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=20.0
Q ss_pred EcCCeeeeeCCCcEEEEeeeeccCCc
Q psy16426 14 IQNQLVGAMEGDQMTLECHSEAYPKS 39 (194)
Q Consensus 14 ~~~~~~~v~~G~~v~L~C~~~g~p~~ 39 (194)
.++.+..+.+|+.+++.|....+.-|
T Consensus 57 ~spAP~l~pyGdrvtVpC~fp~H~WP 82 (348)
T PHA03189 57 NSPAPLLVPYGDRVTVPCTFPTHDWP 82 (348)
T ss_pred CCCCccccCCCceeeeeeeecCCCCc
Confidence 34567788999999999997765444
No 354
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=91.98 E-value=0.89 Score=29.24 Aligned_cols=74 Identities=11% Similarity=0.151 Sum_probs=43.8
Q ss_pred EEEEEE-eeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16426 73 MTLECH-SEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149 (194)
Q Consensus 73 ~~l~C~-~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~ 149 (194)
+.-.|. +.|.|++.+.|..+-+.... . + .....++.+...+.+.+-.....|.-..+|.+....-....++.|.
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~e-t-q-~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~ 97 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAE-F-Q-EIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN 97 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCcee-e-e-eeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence 566798 67788889999853211111 0 1 1123344444555666666666777799999987654444455553
No 355
>PHA03270 envelope glycoprotein C; Provisional
Probab=91.92 E-value=3.6 Score=33.84 Aligned_cols=100 Identities=15% Similarity=0.237 Sum_probs=56.3
Q ss_pred CceeEEEecC--ceEE--------EeeCCeEEeccceeEEeeCCeEEEEEEeeccCCC---ccEEEecCcEEee-CCCce
Q psy16426 38 KSINYWTKEN--GEII--------AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKS---INYWTKENGEIIA-QGSKY 103 (194)
Q Consensus 38 ~~~v~W~k~~--~~l~--------v~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p---~v~W~~~~~~~~~-~~~~~ 103 (194)
.-.|.|.... +... .+.+|.+.+.+. .+..|+...-.|.+..+.++ .+.||.++..... ..-+.
T Consensus 194 eGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~ 271 (466)
T PHA03270 194 QGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRT 271 (466)
T ss_pred ceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeee
Confidence 4478888432 3222 345666655544 34789999999999887554 4669995543322 21111
Q ss_pred eEEecCCceeEEEEEEEeecCCCCC-eEEEEEEEcCC
Q psy16426 104 EPILLDNAYKIHMKLTIKAVTKQDF-GAYKCVSKNSL 139 (194)
Q Consensus 104 ~~~~~~~~~~~~~~L~i~~~~~~d~-g~y~C~a~n~~ 139 (194)
......+.+...++|++........ -+++|.+.-..
T Consensus 272 ~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~r 308 (466)
T PHA03270 272 RVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHR 308 (466)
T ss_pred eeEecCCCeeEEEEEeccccccCCCCCCceEEEEEcc
Confidence 1122223345566776665443222 37899987543
No 356
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=91.83 E-value=0.12 Score=33.33 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=23.8
Q ss_pred eeeeCCCcEEEEeee-ec----cCCceeEEEecCce
Q psy16426 19 VGAMEGDQMTLECHS-EA----YPKSINYWTKENGE 49 (194)
Q Consensus 19 ~~v~~G~~v~L~C~~-~g----~p~~~v~W~k~~~~ 49 (194)
..+.+|.+..|.|.- .+ .+.+.+.||+++..
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~ 40 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVL 40 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEE
Confidence 467789999999972 33 35679999998754
No 357
>PHA03273 envelope glycoprotein C; Provisional
Probab=91.80 E-value=3.4 Score=34.32 Aligned_cols=111 Identities=14% Similarity=0.228 Sum_probs=62.5
Q ss_pred EEEEeee-eccCCceeEEEecC--ceEE--------EeeCCeEEeccceeEEeeCCeEEEEEEeeccCCC---ccEEEec
Q psy16426 27 MTLECHS-EAYPKSINYWTKEN--GEII--------AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKS---INYWTKE 92 (194)
Q Consensus 27 v~L~C~~-~g~p~~~v~W~k~~--~~l~--------v~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p---~v~W~~~ 92 (194)
..|.-.. +......|.|.... +... .+.+|.+.+.++ .+.+|+...-.|.+..+.++ .+.|+.+
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 4454442 22234567888532 2221 245676665554 34789999999999886544 4669995
Q ss_pred CcEEe-eCCCce-eEEecCCceeEEEEEEEeecCC-CCCeEEEEEEEcCC
Q psy16426 93 NGEII-AQGSKY-EPILLDNAYKIHMKLTIKAVTK-QDFGAYKCVSKNSL 139 (194)
Q Consensus 93 ~~~~~-~~~~~~-~~~~~~~~~~~~~~L~i~~~~~-~d~g~y~C~a~n~~ 139 (194)
+.... ...... .....++.+...++|++..... ...-+++|.+.-..
T Consensus 276 g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~r 325 (486)
T PHA03273 276 AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYR 325 (486)
T ss_pred CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEcc
Confidence 54433 111111 1123334345567777776543 33348899987543
No 358
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=91.70 E-value=0.24 Score=32.48 Aligned_cols=33 Identities=15% Similarity=0.333 Sum_probs=24.2
Q ss_pred CeeeeeCCCcEEEEeeee-----------ccCCceeEEEecCce
Q psy16426 17 QLVGAMEGDQMTLECHSE-----------AYPKSINYWTKENGE 49 (194)
Q Consensus 17 ~~~~v~~G~~v~L~C~~~-----------g~p~~~v~W~k~~~~ 49 (194)
....+.+|+.+.|.|.+. ......+.||+++..
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~ 51 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGD 51 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCC
Confidence 346788999999999972 122448999998643
No 359
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=91.33 E-value=0.48 Score=30.02 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=24.2
Q ss_pred eeeeeCCCcEEEEeeeeccCC--ceeEEEecCce
Q psy16426 18 LVGAMEGDQMTLECHSEAYPK--SINYWTKENGE 49 (194)
Q Consensus 18 ~~~v~~G~~v~L~C~~~g~p~--~~v~W~k~~~~ 49 (194)
+..+..|++++|+|.....+. +.|.|+..+..
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~ 41 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNK 41 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCc
Confidence 346788999999999866444 49999975543
No 360
>PHA03269 envelope glycoprotein C; Provisional
Probab=91.00 E-value=2.4 Score=35.36 Aligned_cols=86 Identities=20% Similarity=0.167 Sum_probs=50.6
Q ss_pred EeeCCeEEeccceeEEeeCCeEEEEEEeeccCCC---ccEEEecCcEEeeCCCcee-EEecCCceeEEEEEEEeecCCCC
Q psy16426 52 AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKS---INYWTKENGEIIAQGSKYE-PILLDNAYKIHMKLTIKAVTKQD 127 (194)
Q Consensus 52 v~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p---~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d 127 (194)
++.+|.+.+.+. .+.+|+...-.|.+..+.++ .+.|+.+++......-... ....++.+...++|++......|
T Consensus 326 ~yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d 403 (566)
T PHA03269 326 SYKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNAD 403 (566)
T ss_pred EecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccC
Confidence 345665555443 35789999999999887544 4669995444432111111 11344446666777774433333
Q ss_pred --CeEEEEEEEcCC
Q psy16426 128 --FGAYKCVSKNSL 139 (194)
Q Consensus 128 --~g~y~C~a~n~~ 139 (194)
.-+++|.+....
T Consensus 404 ~~PPsLrCeV~W~R 417 (566)
T PHA03269 404 YPPPAIQCNVLWIR 417 (566)
T ss_pred CCCCCceEEEEEcc
Confidence 347899987543
No 361
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=91.00 E-value=4.6 Score=30.07 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=23.5
Q ss_pred eeEEEecCceEE---------EeeCCeEEeccceeEEeeCCe-EEEEEEeeccCCCccEEEecC
Q psy16426 40 INYWTKENGEII---------AQVPPMIWIQNQLVGAMEGDQ-MTLECHSEAYPKSINYWTKEN 93 (194)
Q Consensus 40 ~v~W~k~~~~l~---------v~~~p~i~~~~~~~~~~~g~~-~~l~C~~~~~p~p~v~W~~~~ 93 (194)
++.|++++.... |+.+|.+.+. ...|.- ....|...+. .++.|.-++
T Consensus 58 ~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv~-----F~~g~AVC~A~CVP~~~--v~l~W~v~d 114 (211)
T PF02124_consen 58 QVTWYRDSVSETRFNATATPSVYPKPRVSVR-----FEDGYAVCTARCVPRGN--VTLRWSVGD 114 (211)
T ss_pred EEEEccCCCeeeEeecccccceecCCEEEEE-----ecCCEEEEEcceeeCCC--eEEEEEECC
Confidence 678999755433 5555555431 111211 1223444332 577898744
No 362
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=90.56 E-value=0.25 Score=31.85 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=20.7
Q ss_pred eCCCcEEEEeeeec-cCCceeEEEecC
Q psy16426 22 MEGDQMTLECHSEA-YPKSINYWTKEN 47 (194)
Q Consensus 22 ~~G~~v~L~C~~~g-~p~~~v~W~k~~ 47 (194)
.+|++|+|.|.... .....+.|++..
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~ 28 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNT 28 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCC
Confidence 36999999998765 455689999963
No 363
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=90.49 E-value=2.9 Score=26.02 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=21.9
Q ss_pred EEEEeecCCCCCeEEEEEE-EcCCCceEEEEEEEc
Q psy16426 117 KLTIKAVTKQDFGAYKCVS-KNSLGDTDGSIKLYG 150 (194)
Q Consensus 117 ~L~i~~~~~~d~g~y~C~a-~n~~g~~~~~~~l~v 150 (194)
.+........|.|.+.|.| .+..-.....+.+.+
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 4445556678999999999 555444444555544
No 364
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=90.45 E-value=0.44 Score=29.91 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=20.4
Q ss_pred CCcEEEEeeeeccC--CceeEEEecCce
Q psy16426 24 GDQMTLECHSEAYP--KSINYWTKENGE 49 (194)
Q Consensus 24 G~~v~L~C~~~g~p--~~~v~W~k~~~~ 49 (194)
|++++|.|.+.+.+ ...+.|...+..
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~ 28 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKK 28 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcc
Confidence 78999999998754 457799886653
No 365
>PHA03052 Hypothetical protein; Provisional
Probab=90.10 E-value=0.87 Score=27.18 Aligned_cols=34 Identities=12% Similarity=0.259 Sum_probs=25.5
Q ss_pred CCeeeeeCCCcEEEEeeeec---cCCceeEEEecCce
Q psy16426 16 NQLVGAMEGDQMTLECHSEA---YPKSINYWTKENGE 49 (194)
Q Consensus 16 ~~~~~v~~G~~v~L~C~~~g---~p~~~v~W~k~~~~ 49 (194)
|....+..|+.++|.|.+.- ...+.|.|.-|+..
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~ 40 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMY 40 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcE
Confidence 46677889999999999753 23567889887653
No 366
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=89.91 E-value=3.4 Score=27.65 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=23.6
Q ss_pred cCCeeeeeCCCcEEEEeeeecc----CCceeEEEe
Q psy16426 15 QNQLVGAMEGDQMTLECHSEAY----PKSINYWTK 45 (194)
Q Consensus 15 ~~~~~~v~~G~~v~L~C~~~g~----p~~~v~W~k 45 (194)
.+..+.+..|++++|.|..... +...|.|+.
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~ 38 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHY 38 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEE
Confidence 3455778899999999998653 235899955
No 367
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=89.73 E-value=0.53 Score=30.64 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=19.5
Q ss_pred CCCcEEEEeeeeccC------CceeEEEec
Q psy16426 23 EGDQMTLECHSEAYP------KSINYWTKE 46 (194)
Q Consensus 23 ~G~~v~L~C~~~g~p------~~~v~W~k~ 46 (194)
.|++|+|.|.....+ ...|.|++.
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~ 30 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKL 30 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEe
Confidence 489999999977643 468999996
No 368
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=89.63 E-value=0.48 Score=30.52 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=18.5
Q ss_pred CcEEEEeee-eccCCceeEEEec
Q psy16426 25 DQMTLECHS-EAYPKSINYWTKE 46 (194)
Q Consensus 25 ~~v~L~C~~-~g~p~~~v~W~k~ 46 (194)
....+.|.+ .|.|.+.|+|+++
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~ 38 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETT 38 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeC
Confidence 346889997 5789999999996
No 369
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=89.62 E-value=0.55 Score=30.52 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=19.3
Q ss_pred CCCcEEEEeeeeccC------CceeEEEecC
Q psy16426 23 EGDQMTLECHSEAYP------KSINYWTKEN 47 (194)
Q Consensus 23 ~G~~v~L~C~~~g~p------~~~v~W~k~~ 47 (194)
.|++|+|.|.....| ...|.|++..
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~ 31 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLE 31 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEec
Confidence 489999999976542 3469999954
No 370
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=89.58 E-value=0.53 Score=31.33 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=18.6
Q ss_pred CCCcEEEEeeeeccC------------CceeEEEec
Q psy16426 23 EGDQMTLECHSEAYP------------KSINYWTKE 46 (194)
Q Consensus 23 ~G~~v~L~C~~~g~p------------~~~v~W~k~ 46 (194)
.|++|+|.|...... .+.|.|++-
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~ 36 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFI 36 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEe
Confidence 489999999976432 458999984
No 371
>KOG1026|consensus
Probab=89.25 E-value=0.9 Score=40.15 Aligned_cols=127 Identities=13% Similarity=0.113 Sum_probs=69.6
Q ss_pred eeeeeCCCcEEEEeeeeccCCceeEEEecCceEE-------------------------------------EeeCCeEEe
Q psy16426 18 LVGAMEGDQMTLECHSEAYPKSINYWTKENGEII-------------------------------------AQVPPMIWI 60 (194)
Q Consensus 18 ~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~l~-------------------------------------v~~~p~i~~ 60 (194)
...+..|.++++.|...+.+.+.+.|+.++.... +..++....
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~E~~~~~~~~~v~~~~~~p~~~~~ 280 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLENDLCIAENAVARSNPSILLVVDLPKAEVL 280 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeeechhhHHHHhhhhcCceeeeEEeccccccc
Confidence 3567789999999999999999999998654332 000100000
Q ss_pred ccceeEEeeCCeEEEEEE---eeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEc
Q psy16426 61 QNQLVGAMEGDQMTLECH---SEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKN 137 (194)
Q Consensus 61 ~~~~~~~~~g~~~~l~C~---~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n 137 (194)
..... .-.-.|. +.+.+.+..+|..++.. ....+......... ...+........+.|+|+|.+.+
T Consensus 281 ~~~~~------~~~~~C~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~t~s~~----~~C~~~~~~~h~~~~~~~~~~e~ 349 (774)
T KOG1026|consen 281 LCSPL------SDHHNCIPIGITANPGPALHWCYNGSG-LNYRGTVCVTKSGK----EQCLPWNDPPHSHNGNYTLFPEL 349 (774)
T ss_pred CCCCc------cccCceeeeeccCCCCCceeeeecCcc-ceEecccccccccC----cCCcccCcCcccccCcceeeecc
Confidence 00000 0022233 23455666778874433 22221111111110 02333334456778999999999
Q ss_pred CCCceEEEEEEEcccCCC
Q psy16426 138 SLGDTDGSIKLYGKKKKK 155 (194)
Q Consensus 138 ~~g~~~~~~~l~v~~~p~ 155 (194)
..|.........+...|.
T Consensus 350 ~~g~~~~r~~g~~~~~P~ 367 (774)
T KOG1026|consen 350 PGGKNYCRNPGGFMSRPW 367 (774)
T ss_pred cCccccccCcCccccCCC
Confidence 998887766555555553
No 372
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=87.76 E-value=0.86 Score=30.10 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=18.9
Q ss_pred CCCcEEEEeeeeccC----------CceeEEEec
Q psy16426 23 EGDQMTLECHSEAYP----------KSINYWTKE 46 (194)
Q Consensus 23 ~G~~v~L~C~~~g~p----------~~~v~W~k~ 46 (194)
.|++|+|.|.....+ ...|.|++.
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~ 34 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKL 34 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEe
Confidence 489999999987543 357999995
No 373
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=87.60 E-value=0.7 Score=26.10 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=19.0
Q ss_pred EEEEeeeeccCCceeEEEecCce
Q psy16426 27 MTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 27 v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
++|.|.+.+.+...+.|++++..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~ 23 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKP 23 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEE
Confidence 47899999877889999997653
No 374
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=87.30 E-value=1.6 Score=28.64 Aligned_cols=35 Identities=29% Similarity=0.283 Sum_probs=26.8
Q ss_pred EEEEEeecCCCCCeEEEEEEEcCCCceEE-EEEEEc
Q psy16426 116 MKLTIKAVTKQDFGAYKCVSKNSLGDTDG-SIKLYG 150 (194)
Q Consensus 116 ~~L~i~~~~~~d~g~y~C~a~n~~g~~~~-~~~l~v 150 (194)
.+|.|..++..|+|.|...+.+..|.-.. .+.+.|
T Consensus 71 laLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 71 LALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred ceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 38999999999999999999999887643 355554
No 375
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=86.71 E-value=0.52 Score=28.07 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=18.4
Q ss_pred eCCCcEEEEeeeeccCCceeEEEecCc
Q psy16426 22 MEGDQMTLECHSEAYPKSINYWTKENG 48 (194)
Q Consensus 22 ~~G~~v~L~C~~~g~p~~~v~W~k~~~ 48 (194)
..|.+|+|+|...+. .+.|.+++.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~ 28 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQ 28 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCc
Confidence 458999999976532 289999874
No 376
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=86.67 E-value=0.98 Score=28.94 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=17.7
Q ss_pred CCcEEEEeeeeccC---CceeEEEecC
Q psy16426 24 GDQMTLECHSEAYP---KSINYWTKEN 47 (194)
Q Consensus 24 G~~v~L~C~~~g~p---~~~v~W~k~~ 47 (194)
|++|+|.|...+.. ...+.|++.+
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~ 27 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQ 27 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECC
Confidence 78999999976322 2378899854
No 377
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=86.36 E-value=4.9 Score=32.16 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=16.8
Q ss_pred eEEEEEEeeccCCCcc--EEEec
Q psy16426 72 QMTLECHSEAYPKSIN--YWTKE 92 (194)
Q Consensus 72 ~~~l~C~~~~~p~p~v--~W~~~ 92 (194)
.+.|.|.+.|+.+..| .|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5799999999876654 59985
No 378
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=85.89 E-value=1.2 Score=28.51 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=17.7
Q ss_pred CCcEEEEeeeeccC-CceeEEEecC
Q psy16426 24 GDQMTLECHSEAYP-KSINYWTKEN 47 (194)
Q Consensus 24 G~~v~L~C~~~g~p-~~~v~W~k~~ 47 (194)
|++|+|.|...... ...|.|++..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~ 25 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQ 25 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcC
Confidence 78999999865432 2369999853
No 379
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=84.00 E-value=1.3 Score=28.06 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=18.1
Q ss_pred CcEEEEeeeeccC---CceeEEEecCc
Q psy16426 25 DQMTLECHSEAYP---KSINYWTKENG 48 (194)
Q Consensus 25 ~~v~L~C~~~g~p---~~~v~W~k~~~ 48 (194)
++|+|.|.....+ ...|.|++...
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~ 27 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITG 27 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECC
Confidence 5799999987654 44799999643
No 380
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=83.58 E-value=1.6 Score=28.10 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=20.9
Q ss_pred eeeeCCC--cEEEEeeee-ccCCceeEEEec
Q psy16426 19 VGAMEGD--QMTLECHSE-AYPKSINYWTKE 46 (194)
Q Consensus 19 ~~v~~G~--~v~L~C~~~-g~p~~~v~W~k~ 46 (194)
+.+..|. .+.+.|.+. |.|.+.|+|+++
T Consensus 8 ~~~~~~~~~~~va~C~s~~gkPaa~IsW~~~ 38 (95)
T cd07703 8 VEVSAGTIPVPVAKCVSANGRPPARISWSST 38 (95)
T ss_pred EEeecCCCccEEEEEEcCCCCCCcEEEEEcC
Confidence 4444443 478999865 679999999987
No 381
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=82.04 E-value=4.5 Score=25.70 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=25.5
Q ss_pred EEcCCeeeeeCCCcEEEEeeeecc-----CCceeEEEecCc
Q psy16426 13 WIQNQLVGAMEGDQMTLECHSEAY-----PKSINYWTKENG 48 (194)
Q Consensus 13 ~~~~~~~~v~~G~~v~L~C~~~g~-----p~~~v~W~k~~~ 48 (194)
.+.++...+..|++++..|..... ....+.|..++.
T Consensus 7 ~i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~ 47 (89)
T PF06328_consen 7 VISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGE 47 (89)
T ss_dssp EEECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSC
T ss_pred EEecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCE
Confidence 345666678899999999997643 455888998765
No 382
>smart00406 IGv Immunoglobulin V-Type.
Probab=79.18 E-value=3 Score=24.99 Aligned_cols=22 Identities=23% Similarity=0.597 Sum_probs=16.5
Q ss_pred cEEEEeeeeccCCc--eeEEEecC
Q psy16426 26 QMTLECHSEAYPKS--INYWTKEN 47 (194)
Q Consensus 26 ~v~L~C~~~g~p~~--~v~W~k~~ 47 (194)
+|+|.|.+...... .+.|++..
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~ 24 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQP 24 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeC
Confidence 57899998765443 78999853
No 383
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=76.89 E-value=15 Score=30.25 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=21.8
Q ss_pred EEEEEEeecCCCCCeEEEEEEEcCCCce
Q psy16426 115 HMKLTIKAVTKQDFGAYKCVSKNSLGDT 142 (194)
Q Consensus 115 ~~~L~i~~~~~~d~g~y~C~a~n~~g~~ 142 (194)
.++|+|..+.-+..|-|+|.|....-..
T Consensus 345 ~STLTIkka~I~N~GCY~~~a~~g~~~~ 372 (500)
T PHA02914 345 NSTLTIKKAHINNAGCYEAQAFMGKFKE 372 (500)
T ss_pred hceEEeeeEEEEcCCceEEEEecCcchh
Confidence 3589999998889999999987654333
No 384
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=76.57 E-value=10 Score=23.80 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=27.6
Q ss_pred cccCCeEEEcCCeeeeeCC----CcEEEEeeeeccCCceeEEEecCceE
Q psy16426 6 QNVPPMIWIQNQLVGAMEG----DQMTLECHSEAYPKSINYWTKENGEI 50 (194)
Q Consensus 6 v~~~P~~~~~~~~~~v~~G----~~v~L~C~~~g~p~~~v~W~k~~~~l 50 (194)
...+|.|+.+.....+... ....|.+.+.+. ...+.||.|+..+
T Consensus 7 ~~~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~ 54 (89)
T PF06832_consen 7 SGSPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPL 54 (89)
T ss_pred CCCCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEc
Confidence 3466777766654444332 256666666665 4489999987653
No 385
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=75.01 E-value=5.4 Score=31.94 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=25.6
Q ss_pred ccCCeEEEcCCeeeeeCCCcEEEEeeeecc-C-CceeEEEec
Q psy16426 7 NVPPMIWIQNQLVGAMEGDQMTLECHSEAY-P-KSINYWTKE 46 (194)
Q Consensus 7 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~-p-~~~v~W~k~ 46 (194)
.+||.+.+..... .+ .++|+|.|.|. | ...+.|.++
T Consensus 201 ~vpP~V~Vt~k~~---~~-~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 201 PVTPTVKVTGEEL---GD-NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CCCCceEEecccC---CC-CceEEEEEEeEeCCccEEEEEec
Confidence 4678877655411 23 68999999995 4 457889997
No 386
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=73.35 E-value=5.4 Score=26.38 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=17.7
Q ss_pred CCCcEEEEeeeeccC-------CceeEEEec
Q psy16426 23 EGDQMTLECHSEAYP-------KSINYWTKE 46 (194)
Q Consensus 23 ~G~~v~L~C~~~g~p-------~~~v~W~k~ 46 (194)
.|++|+|.|...-.| .+.|.|++-
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~ 31 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKL 31 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEe
Confidence 488999999954322 468999984
No 387
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=73.32 E-value=45 Score=27.57 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=27.8
Q ss_pred EEEEeecCCCCCeEEEEEEEc-CCCceEEEEEEEcccC
Q psy16426 117 KLTIKAVTKQDFGAYKCVSKN-SLGDTDGSIKLYGKKK 153 (194)
Q Consensus 117 ~L~i~~~~~~d~g~y~C~a~n-~~g~~~~~~~l~v~~~ 153 (194)
++.+.+++.+|.|.|.|.+.. ..-+.+..+.+.|.+.
T Consensus 82 sf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVmPK 119 (500)
T PHA02914 82 SFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKAPK 119 (500)
T ss_pred EEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEccc
Confidence 677788999999999999974 4445566677777544
No 388
>KOG0613|consensus
Probab=72.92 E-value=2.3 Score=39.45 Aligned_cols=75 Identities=12% Similarity=-0.024 Sum_probs=49.0
Q ss_pred EeeCCeEEEEEEeeccCCCc-cEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy16426 67 AMEGDQMTLECHSEAYPKSI-NYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDG 144 (194)
Q Consensus 67 ~~~g~~~~l~C~~~~~p~p~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~ 144 (194)
...+..+.+.|...+...|. ++|+. +.....+....... .........+.|..+...+.+.|.|.+.|..|...-
T Consensus 346 a~d~~~v~m~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~--~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~ 421 (1205)
T KOG0613|consen 346 ARDNTLVEMPTALSGTQKPDEAQGYH-GEEVSSESLGALPC--PVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQT 421 (1205)
T ss_pred cccCcceeecccccCCcCCchheeec-cccccccccccccc--ccccccCcchhhhhcCcccccccccceeccCCcccc
Confidence 44566788889888888776 88998 43333322211111 111122347788889999999999999999886653
No 389
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=71.02 E-value=5.6 Score=25.58 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=16.6
Q ss_pred CcEEEEeeeeccC---CceeEEEec
Q psy16426 25 DQMTLECHSEAYP---KSINYWTKE 46 (194)
Q Consensus 25 ~~v~L~C~~~g~p---~~~v~W~k~ 46 (194)
.+|+|.|...... ...|.|++.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~ 25 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRE 25 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEc
Confidence 3789999976543 448999984
No 390
>KOG1761|consensus
Probab=69.39 E-value=4 Score=27.07 Aligned_cols=56 Identities=34% Similarity=0.448 Sum_probs=35.5
Q ss_pred eEEEEEEEcCCCceEEEEEEEcccCCCCChHHHHHHhhhhccchhhHHHHHHHHHhh
Q psy16426 129 GAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKK 185 (194)
Q Consensus 129 g~y~C~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (194)
..|.|...-..|....+..+...+.+.- -..-.++++-+=+|=+||++++.+++.+
T Consensus 53 ~e~~cLiRa~~G~kKiSTVV~akev~~F-~~~YS~vlk~~M~~LkKr~kk~~kkk~~ 108 (116)
T KOG1761|consen 53 SEYRCLIRATDGKKKISTVVKAKEVNKF-QQSYSAVLKAQMDGLKKRKKKKSKKKTK 108 (116)
T ss_pred ccceEEEEeccCCceEEEEEeHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccce
Confidence 3799999999998766666655444321 1245566777777766666655544433
No 391
>PHA03240 envelope glycoprotein M; Provisional
Probab=68.03 E-value=4.5 Score=30.02 Aligned_cols=29 Identities=24% Similarity=0.231 Sum_probs=20.9
Q ss_pred EEEEEEEeecCCCCCeEEEEEEEcCCCce
Q psy16426 114 IHMKLTIKAVTKQDFGAYKCVSKNSLGDT 142 (194)
Q Consensus 114 ~~~~L~i~~~~~~d~g~y~C~a~n~~g~~ 142 (194)
.+++|.|.++..+|.|+|.-.-....|..
T Consensus 103 ~NstL~i~~vn~sd~~nYcr~k~~~~g~~ 131 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEYCRKKCPPKGDC 131 (258)
T ss_pred ccceEEEEEEeecCcchhhhccCCCCCCc
Confidence 35699999999999999854444444443
No 392
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=67.87 E-value=1.6e+02 Score=30.83 Aligned_cols=45 Identities=9% Similarity=-0.098 Sum_probs=32.6
Q ss_pred ccccCC-eEEEcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCce
Q psy16426 5 GQNVPP-MIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE 49 (194)
Q Consensus 5 ~v~~~P-~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~ 49 (194)
-|+.++ .+.+..+...+..|+.++|++.+...+..++.|..+++.
T Consensus 1862 ~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs 1907 (2740)
T TIGR00864 1862 FAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAA 1907 (2740)
T ss_pred EEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCC
Confidence 344554 344455666778899999999987767788999987644
No 393
>PHA03112 IL-18 binding protein; Provisional
Probab=67.55 E-value=11 Score=26.08 Aligned_cols=78 Identities=26% Similarity=0.384 Sum_probs=40.2
Q ss_pred eeCCeEEEEEEeecc-CC-CccEEEecCcEEeeCCC---ceeE------EecCCceeEEEEEEEeecCCC-CCeEEEEEE
Q psy16426 68 MEGDQMTLECHSEAY-PK-SINYWTKENGEIIAQGS---KYEP------ILLDNAYKIHMKLTIKAVTKQ-DFGAYKCVS 135 (194)
Q Consensus 68 ~~g~~~~l~C~~~~~-p~-p~v~W~~~~~~~~~~~~---~~~~------~~~~~~~~~~~~L~i~~~~~~-d~g~y~C~a 135 (194)
.+++.+.|.|.+-+. |. ..++|..++.....+.. .... ............|.+.+++.. +.-+++|.+
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL 115 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL 115 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence 357889999998754 43 45779964422221110 0000 001111123446666776643 334788887
Q ss_pred EcCCCceEEE
Q psy16426 136 KNSLGDTDGS 145 (194)
Q Consensus 136 ~n~~g~~~~~ 145 (194)
....+....+
T Consensus 116 ~D~~~~~k~~ 125 (141)
T PHA03112 116 MDLDGPIKKS 125 (141)
T ss_pred ecCCchhhHH
Confidence 7665544433
No 394
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=64.23 E-value=12 Score=25.14 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=17.2
Q ss_pred CCCcEEEEeeeeccC-----------CceeEEEe
Q psy16426 23 EGDQMTLECHSEAYP-----------KSINYWTK 45 (194)
Q Consensus 23 ~G~~v~L~C~~~g~p-----------~~~v~W~k 45 (194)
.|++++|.|...-.| ...|.|++
T Consensus 1 ~~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~ 34 (117)
T cd05901 1 LSGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTK 34 (117)
T ss_pred CCCCEEEeeEEEecCCCCCcccCCCCCcEEEEEE
Confidence 378999999977433 23788987
No 395
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=63.57 E-value=35 Score=21.59 Aligned_cols=65 Identities=23% Similarity=0.354 Sum_probs=35.0
Q ss_pred ceeEEeeCCeEEEEEEeecc-----CCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEE
Q psy16426 63 QLVGAMEGDQMTLECHSEAY-----PKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCV 134 (194)
Q Consensus 63 ~~~~~~~g~~~~l~C~~~~~-----p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~ 134 (194)
+...+..|..+++.|..... ....+.|.. ++...+ ..++. ...+. .+++++.+......-.|-|.
T Consensus 11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkl-n~~~iP-~~qy~-~in~~----~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKL-NGEKIP-GSQYR-VINDT----VSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEEC-SSCEST-CGCEE-EESTT----EEEEEESS--SSEEEEEEEE
T ss_pred CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEE-CCEECC-hhHcc-eeCCe----EEEEEEccCCCCCceEEEEE
Confidence 34457889999999986532 345677987 444433 33443 22222 36777777654443344444
No 396
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=62.66 E-value=30 Score=20.64 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=28.9
Q ss_pred EEEeeeeccCCceeEEEecCceEEEeeCCeEEeccceeEEeeCCeEEEEEEeeccCCCc--cEEEe
Q psy16426 28 TLECHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSI--NYWTK 91 (194)
Q Consensus 28 ~L~C~~~g~p~~~v~W~k~~~~l~v~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p~--v~W~~ 91 (194)
+|+|.... ..-++||=||..+.-.-.+.+.+ ..-...++|..++....+ +.|+.
T Consensus 2 tltC~s~~--sLPiswYcN~TRLlRlt~~Tlt~--------~~ltcNFtCV~qSGh~hSiWItW~~ 57 (71)
T PF11049_consen 2 TLTCPSNA--SLPISWYCNGTRLLRLTQQTLTV--------VTLTCNFTCVGQSGHRHSIWITWYA 57 (71)
T ss_pred ceecCCCC--CCcccEEECCceeeeecCCeEee--------eeeeEEeeecCCCCCCceEEEEEcC
Confidence 57886665 44578999887653211222221 122356777765544333 33654
No 397
>PTZ00074 60S ribosomal protein L34; Provisional
Probab=59.90 E-value=9.9 Score=26.17 Aligned_cols=12 Identities=25% Similarity=0.199 Sum_probs=6.2
Q ss_pred hHHHHHHhhhhc
Q psy16426 158 KEKEKKVKKKKE 169 (194)
Q Consensus 158 ~~~~~~~~~~~~ 169 (194)
.+||+++-++.-
T Consensus 94 LiEEqKivkkv~ 105 (135)
T PTZ00074 94 LVEEQKIVKQVL 105 (135)
T ss_pred HHHHHHHHHHHH
Confidence 346666554443
No 398
>KOG0613|consensus
Probab=59.88 E-value=20 Score=33.66 Aligned_cols=104 Identities=11% Similarity=0.032 Sum_probs=63.6
Q ss_pred EEEEeeeeccCCceeEEEecCceEEEeeCCeEEeccceeEEeeCCeEEEEEEeeccCCCccEEEecCcEEeeCCCceeEE
Q psy16426 27 MTLECHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPI 106 (194)
Q Consensus 27 v~L~C~~~g~p~~~v~W~k~~~~l~v~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~ 106 (194)
+.+.|.+ |.|.+.+.|+.++..+ .++ .....-....+....+.|.....+.+.+.|+. +. +.....
T Consensus 208 v~~v~s~-gqp~~~~~~~~~g~~i---~~~---~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~-~~-l~e~~~----- 273 (1205)
T KOG0613|consen 208 VRAVVSA-GQPEPLERWEILGELI---APG---SAPSMSVTLEASDRKIQLTLRAPRGPYSAHIL-GY-LIEQRK----- 273 (1205)
T ss_pred EEEEEec-CCCccchhhhhccccc---CCC---CccccccccchhheeeeEEeecCCCchHHHHh-cc-hhhhcc-----
Confidence 4445543 4578889999976532 111 11122223456778889998888878777776 32 222211
Q ss_pred ecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16426 107 LLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149 (194)
Q Consensus 107 ~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~ 149 (194)
... ..+..|.+....+.+.|+|...+..+.....+.-.
T Consensus 274 ~~~-----~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~ 311 (1205)
T KOG0613|consen 274 HKG-----GNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEE 311 (1205)
T ss_pred cCC-----CccccccccCCccccceeeecccCCcccceeeeEE
Confidence 111 23667777788888899999888877766554443
No 399
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=58.94 E-value=52 Score=24.62 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=24.9
Q ss_pred ceeEEEecCceEE-----------EeeCCeEEeccceeEEeeCCeEEEEEEeeccCC
Q psy16426 39 SINYWTKENGEII-----------AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK 84 (194)
Q Consensus 39 ~~v~W~k~~~~l~-----------v~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~ 84 (194)
..+.|+-+|.... ...+..+.+......-.....+.-+|...|+|.
T Consensus 106 v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~GYP~ 162 (211)
T PF02124_consen 106 VTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLIGYPD 162 (211)
T ss_pred eEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEEeeCCC
Confidence 6889998775321 111222222222121223445788999999874
No 400
>KOG2812|consensus
Probab=57.73 E-value=6.1 Score=31.65 Aligned_cols=7 Identities=43% Similarity=0.752 Sum_probs=2.6
Q ss_pred Hhhhhcc
Q psy16426 164 VKKKKEE 170 (194)
Q Consensus 164 ~~~~~~~ 170 (194)
++++.++
T Consensus 241 ~k~~~ke 247 (426)
T KOG2812|consen 241 VKDREKE 247 (426)
T ss_pred hhhHHHH
Confidence 3333333
No 401
>KOG3113|consensus
Probab=56.04 E-value=12 Score=28.56 Aligned_cols=29 Identities=34% Similarity=0.421 Sum_probs=20.5
Q ss_pred CChHHHHHHhhhhccchhhHHHHHHHHHh
Q psy16426 156 KKKEKEKKVKKKKEEGKKKKKKKKKKKKK 184 (194)
Q Consensus 156 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (194)
.|..|+.++.+.+=++.+++.+..|+-|+
T Consensus 166 Ng~~E~~dllk~rme~~kak~k~~Kk~Kk 194 (293)
T KOG3113|consen 166 NGTEEDVDLLKTRMEERKAKAKLEKKDKK 194 (293)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 45668888888887777777666665555
No 402
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=54.49 E-value=15 Score=22.31 Aligned_cols=14 Identities=50% Similarity=0.534 Sum_probs=7.7
Q ss_pred HHHhhhhccchhhH
Q psy16426 162 KKVKKKKEEGKKKK 175 (194)
Q Consensus 162 ~~~~~~~~~~~~~~ 175 (194)
.+.++++|.++|++
T Consensus 45 aK~ie~~ere~K~k 58 (74)
T PF15086_consen 45 AKAIEKEEREKKKK 58 (74)
T ss_pred HHHHHHHHHHHHHH
Confidence 44556666655544
No 403
>KOG3794|consensus
Probab=54.35 E-value=8.8 Score=31.21 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=9.3
Q ss_pred eeEEeeCCeEEEEEEeec
Q psy16426 64 LVGAMEGDQMTLECHSEA 81 (194)
Q Consensus 64 ~~~~~~g~~~~l~C~~~~ 81 (194)
+..+..-..-.|.|.-.|
T Consensus 117 PFGiqVRNVrC~kChkwG 134 (453)
T KOG3794|consen 117 PFGIQVRNVRCLKCHKWG 134 (453)
T ss_pred ccceEeeeeeEEeecccc
Confidence 344444444566676544
No 404
>PHA03112 IL-18 binding protein; Provisional
Probab=53.61 E-value=19 Score=24.96 Aligned_cols=27 Identities=41% Similarity=0.805 Sum_probs=21.3
Q ss_pred eeCCCcEEEEeeeecc-CC-ceeEEEecC
Q psy16426 21 AMEGDQMTLECHSEAY-PK-SINYWTKEN 47 (194)
Q Consensus 21 v~~G~~v~L~C~~~g~-p~-~~v~W~k~~ 47 (194)
..+|+++.|+|.+.++ |. ..+.|..++
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 3569999999999876 43 578899765
No 405
>PHA03283 envelope glycoprotein E; Provisional
Probab=53.49 E-value=41 Score=28.65 Aligned_cols=37 Identities=19% Similarity=0.036 Sum_probs=31.2
Q ss_pred EEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEccc
Q psy16426 116 MKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKK 152 (194)
Q Consensus 116 ~~L~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v~~ 152 (194)
+-|.|.+++.++.|.|+-...+..+.....+.|.|..
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 5899999999999999999998777566677777765
No 406
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=48.74 E-value=37 Score=22.77 Aligned_cols=30 Identities=20% Similarity=0.010 Sum_probs=21.3
Q ss_pred ceeEEeeCCeEEEEEEeeccCCC---ccEEEec
Q psy16426 63 QLVGAMEGDQMTLECHSEAYPKS---INYWTKE 92 (194)
Q Consensus 63 ~~~~~~~g~~~~l~C~~~~~p~p---~v~W~~~ 92 (194)
....+..|..+.|.|.+.+.... .+.|++.
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq 38 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKG 38 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEe
Confidence 34556778889999998775533 4668874
No 407
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=46.16 E-value=18 Score=21.29 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=21.9
Q ss_pred eeeeCCCcEEEEeeeeccCCceeEEEecC
Q psy16426 19 VGAMEGDQMTLECHSEAYPKSINYWTKEN 47 (194)
Q Consensus 19 ~~v~~G~~v~L~C~~~g~p~~~v~W~k~~ 47 (194)
..+..|+.++|...........+.|..++
T Consensus 6 ~~~~~g~~v~f~~~~~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 6 TYVPTGQPVTFTASSSDGSPVTYSWDFGD 34 (69)
T ss_dssp SCEBTTSEEEEEETTTTSSECEEEEE-SS
T ss_pred CEEcCCCEEEEEEEccCCCCeEEEEEECC
Confidence 45778999999999844446689999876
No 408
>PF09085 Adhes-Ig_like: Adhesion molecule, immunoglobulin-like; InterPro: IPR015169 This domain is found in mucosal vascular addressin cell adhesion molecule 1 proteins (MAdCAM-1). These are cell adhesion molecules expressed on the endothelium in mucosa that guide the specific homing of lymphocytes into mucosal tissues. MAdCAM-1 belongs to a subclass of the immunoglobulin superfamily (IgSF), the members of which are ligands for integrins []. The crystal structure of this domain has been reported; it adopts an immunoglobulin-like beta-sandwich structure, with seven strands arranged in two beta-sheets in a Greek-key topology [, ].; GO: 0007155 cell adhesion, 0016020 membrane; PDB: 1GSM_A 1BQS_A.
Probab=41.65 E-value=66 Score=20.82 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=24.9
Q ss_pred cCCeEEEcCCeeeeeCCCcEEEEeeeecc----C-CceeEEEecCceE
Q psy16426 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAY----P-KSINYWTKENGEI 50 (194)
Q Consensus 8 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~----p-~~~v~W~k~~~~l 50 (194)
+|-.++++|. .+..|.+.++-|.+... | ...++|+.++.++
T Consensus 2 FPDqLtVSP~--~LVpg~dqevaCTAhnVtP~~p~~LSfslllGdqeL 47 (110)
T PF09085_consen 2 FPDQLTVSPE--ALVPGRDQEVACTAHNVTPADPDALSFSLLLGDQEL 47 (110)
T ss_dssp --SEEEEESS--SB-TT--SEEEEEEEEEB--STTTEEEEEEETTEE-
T ss_pred CCcceeEChh--HhccCCCceeeeeeccccCCCCCeEEeeeeeCceee
Confidence 3556666764 55679999999998652 2 3478899877664
No 409
>PTZ00074 60S ribosomal protein L34; Provisional
Probab=40.98 E-value=24 Score=24.36 Aligned_cols=7 Identities=29% Similarity=0.880 Sum_probs=3.5
Q ss_pred CeEEEEE
Q psy16426 128 FGAYKCV 134 (194)
Q Consensus 128 ~g~y~C~ 134 (194)
.|.+.|.
T Consensus 76 YGG~lC~ 82 (135)
T PTZ00074 76 YGGVLCH 82 (135)
T ss_pred CccchhH
Confidence 4445564
No 410
>PHA03282 envelope glycoprotein E; Provisional
Probab=40.37 E-value=66 Score=27.18 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=26.4
Q ss_pred EEEEEEeecCCCCCeEEEEEEEcCC--CceEEEEEEEccc
Q psy16426 115 HMKLTIKAVTKQDFGAYKCVSKNSL--GDTDGSIKLYGKK 152 (194)
Q Consensus 115 ~~~L~i~~~~~~d~g~y~C~a~n~~--g~~~~~~~l~v~~ 152 (194)
+.+|.|.+++.+|+|.|+..+...- ....+.+.|.|..
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~p 162 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVGP 162 (540)
T ss_pred cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEecC
Confidence 4589999999999999999864321 2234456666544
No 411
>KOG2812|consensus
Probab=39.90 E-value=22 Score=28.64 Aligned_cols=14 Identities=57% Similarity=0.743 Sum_probs=6.3
Q ss_pred hhhHHHHHHHHHhh
Q psy16426 172 KKKKKKKKKKKKKK 185 (194)
Q Consensus 172 ~~~~~~~~~~~~~~ 185 (194)
|+|++.+|-|||+.
T Consensus 254 kka~~~kk~kkkr~ 267 (426)
T KOG2812|consen 254 KKANKEKKEKKKRS 267 (426)
T ss_pred hhhhhhhhhhhhhh
Confidence 55554444444433
No 412
>PHA03240 envelope glycoprotein M; Provisional
Probab=31.20 E-value=99 Score=23.23 Aligned_cols=28 Identities=21% Similarity=0.158 Sum_probs=21.6
Q ss_pred eeeeeCCCcEEEEeeeeccCCceeEEEe
Q psy16426 18 LVGAMEGDQMTLECHSEAYPKSINYWTK 45 (194)
Q Consensus 18 ~~~v~~G~~v~L~C~~~g~p~~~v~W~k 45 (194)
.+.+.+|++|+|--.-.-.+.-.+.||+
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~ 59 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYK 59 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEe
Confidence 4567889999997764445667899999
No 413
>KOG1059|consensus
Probab=29.52 E-value=27 Score=31.09 Aligned_cols=8 Identities=25% Similarity=0.202 Sum_probs=3.0
Q ss_pred HHhhhhcc
Q psy16426 163 KVKKKKEE 170 (194)
Q Consensus 163 ~~~~~~~~ 170 (194)
...++.|.
T Consensus 837 ~~~~~~e~ 844 (877)
T KOG1059|consen 837 DNLKDTEK 844 (877)
T ss_pred Hhhhcccc
Confidence 33333333
No 414
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=26.31 E-value=1.7e+02 Score=18.11 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=30.1
Q ss_pred EEEEEEeeccCCCccEEEecCcEEeeCCCceeEEecCCceeEEEEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy16426 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDG 144 (194)
Q Consensus 73 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~ 144 (194)
..|.+.+.+. .+.++|+- |+..+....... .+.+ .....|.|+..+....|....
T Consensus 32 ~~l~l~a~~~-~~~~~W~v-dg~~~g~~~~~~------------~~~~---~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 32 QPLVLKAAGG-RGPVYWFV-DGEPLGTTQPGH------------QLFW---QPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred ceEEEEEeCC-CCcEEEEE-CCEEcccCCCCC------------eEEe---CCCCCeeEEEEEEcCCCCEEE
Confidence 4444455554 44899999 666653322111 1111 224567788877777765543
No 415
>PF03174 CHB_HEX_C: Chitobiase/beta-hexosaminidase C-terminal domain; InterPro: IPR004867 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This short domain is found in members of the glycoside hydrolase family 20 (GH20 from CAZY) and represents the C-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. It is composed of a beta sandwich structure []. The function of this domain is unknown. ; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=24.93 E-value=1.2e+02 Score=18.08 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=16.7
Q ss_pred EcCCeeeeeCCCcEEEEeeeeccCCceeEEEecCc
Q psy16426 14 IQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENG 48 (194)
Q Consensus 14 ~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~ 48 (194)
..+....+..+..|+|.|... ...|.+..||.
T Consensus 5 ~sp~~G~~~~~~~v~l~~~~~---~~~I~YT~DGs 36 (75)
T PF03174_consen 5 ASPPSGTYDEGQTVTLSSDTP---GATIYYTLDGS 36 (75)
T ss_dssp -----EEEEETTEEEEE-SST---TSEEEEESSSS
T ss_pred EeCCCCcEecCeEEEEEeCCC---CCEEEEEcCCC
Confidence 344445666688899999333 34666666654
No 416
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.91 E-value=8.9e+02 Score=26.08 Aligned_cols=30 Identities=10% Similarity=-0.100 Sum_probs=21.3
Q ss_pred eEEeeCCeEEEEEEeeccCCCccEEEecCc
Q psy16426 65 VGAMEGDQMTLECHSEAYPKSINYWTKENG 94 (194)
Q Consensus 65 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~ 94 (194)
..+..|+.+.|.+.....+...+.|..+++
T Consensus 1877 ~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdg 1906 (2740)
T TIGR00864 1877 KIAAIGEKVEFQILLAAGSAVNFRLQIGGA 1906 (2740)
T ss_pred ccccCCCEEEEEEEecCCCceEEEEEeCCC
Confidence 345678889999887766666677877444
No 417
>KOG4727|consensus
Probab=24.49 E-value=74 Score=22.91 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=10.2
Q ss_pred CCCCeEEEEEEEcCC
Q psy16426 125 KQDFGAYKCVSKNSL 139 (194)
Q Consensus 125 ~~d~g~y~C~a~n~~ 139 (194)
.+..|.|+|.+.+-.
T Consensus 70 ~sq~~GyyCdVCdcv 84 (193)
T KOG4727|consen 70 RSQKGGYYCDVCDCV 84 (193)
T ss_pred ccccCceeeeeccee
Confidence 456677889877643
No 418
>KOG4055|consensus
Probab=23.02 E-value=81 Score=22.96 Aligned_cols=9 Identities=44% Similarity=0.549 Sum_probs=3.7
Q ss_pred ccchhhHHH
Q psy16426 169 EEGKKKKKK 177 (194)
Q Consensus 169 ~~~~~~~~~ 177 (194)
++++-++|.
T Consensus 123 aEeKTaKKR 131 (213)
T KOG4055|consen 123 AEEKTAKKR 131 (213)
T ss_pred HHHHHHHHH
Confidence 344444433
No 419
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=22.99 E-value=1.1e+02 Score=23.14 Aligned_cols=27 Identities=41% Similarity=0.539 Sum_probs=15.1
Q ss_pred HHHHHHhhhhccchhhHHHHHHHHHhh
Q psy16426 159 EKEKKVKKKKEEGKKKKKKKKKKKKKK 185 (194)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (194)
..+.+++...|.+.||++|--||+.|.
T Consensus 178 prF~eml~~kEkeeKKk~K~aKkk~k~ 204 (217)
T PF10147_consen 178 PRFQEMLQEKEKEEKKKKKEAKKKEKE 204 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667766666666555544444333
No 420
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=21.09 E-value=2.2e+02 Score=20.31 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=20.1
Q ss_pred EEEEEEeecCCCCCeEEEEEEEcC
Q psy16426 115 HMKLTIKAVTKQDFGAYKCVSKNS 138 (194)
Q Consensus 115 ~~~L~i~~~~~~d~g~y~C~a~n~ 138 (194)
..-|.|.+...+|+|.|.-.+.-.
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l~ 146 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWLD 146 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEEC
Confidence 347999999999999999887644
No 421
>KOG2002|consensus
Probab=21.09 E-value=22 Score=32.53 Aligned_cols=6 Identities=83% Similarity=1.226 Sum_probs=2.3
Q ss_pred chhhHH
Q psy16426 171 GKKKKK 176 (194)
Q Consensus 171 ~~~~~~ 176 (194)
|++|+|
T Consensus 918 g~~kkK 923 (1018)
T KOG2002|consen 918 GKRKKK 923 (1018)
T ss_pred Cccccc
Confidence 333333
No 422
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=21.06 E-value=3e+02 Score=19.11 Aligned_cols=81 Identities=7% Similarity=0.046 Sum_probs=35.6
Q ss_pred eEEEcCCeeeeeCCCcEEEEeeeec--c-CCc--eeEEEecCceEEEeeCCeEEeccceeEEeeCCeEEEEEEeeccCCC
Q psy16426 11 MIWIQNQLVGAMEGDQMTLECHSEA--Y-PKS--INYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKS 85 (194)
Q Consensus 11 ~~~~~~~~~~v~~G~~v~L~C~~~g--~-p~~--~v~W~k~~~~l~v~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~p~p 85 (194)
.+...|-+-.+..|++|.++|.+.. . ... .+.+|--+|.-.+...-.....+........+.+.|.-...+....
T Consensus 34 ~v~tmPVpk~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ~dGkG~L~~~~g~~~~pND~Y~L~~~~FRLYYTS~s~~~q 113 (137)
T PF12988_consen 34 TVETMPVPKKIKKGETVEIRCELKREGNYADTRYTIRYFQPDGKGTLRMDDGTVLLPNDRYPLEKEVFRLYYTSRSDDQQ 113 (137)
T ss_dssp EEEE----SS--TTEEEEEEEEEEESS--SS---EEEEE-SSS-EEEEETTS-EE-TTSEEE-S-SEEEEEEEE-SSS-E
T ss_pred EEEEeccccccCCCCEEEEEEEEecCceecccEEEEEEEeecCCEEEEecCCcEeccccceecCcCEEEEEEecCCCCCc
Confidence 3444554556778999999999753 2 222 5556654443222221111122233334455677787776665444
Q ss_pred ccE-EEe
Q psy16426 86 INY-WTK 91 (194)
Q Consensus 86 ~v~-W~~ 91 (194)
.+. |..
T Consensus 114 ~idv~ve 120 (137)
T PF12988_consen 114 TIDVYVE 120 (137)
T ss_dssp EEEEEEE
T ss_pred eeEEEEE
Confidence 444 544
No 423
>PHA03286 envelope glycoprotein E; Provisional
Probab=21.05 E-value=2.2e+02 Score=24.05 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=29.7
Q ss_pred EEEEEEeecCCCCCeEEEEEEEcCCCceEE-EEEEEcc
Q psy16426 115 HMKLTIKAVTKQDFGAYKCVSKNSLGDTDG-SIKLYGK 151 (194)
Q Consensus 115 ~~~L~i~~~~~~d~g~y~C~a~n~~g~~~~-~~~l~v~ 151 (194)
.+.|.|.+++.++.|.|+-...|..|.... .+.|.|.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 358999999999999999999988776554 4566664
No 424
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=20.45 E-value=3.5e+02 Score=19.78 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=31.5
Q ss_pred CCCccEEEecCcEEeeCCCceeE---EecCCceeEEEEEEEeecCCCCCeEEEEEEEcCC
Q psy16426 83 PKSINYWTKENGEIIAQGSKYEP---ILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139 (194)
Q Consensus 83 p~p~v~W~~~~~~~~~~~~~~~~---~~~~~~~~~~~~L~i~~~~~~d~g~y~C~a~n~~ 139 (194)
..|.++|.-+.+++...+ .... +..+.=..-.+.+.|.+....+.-.|.|.+....
T Consensus 121 s~PtitWsVgs~rl~n~g-ftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~D 179 (226)
T PF05955_consen 121 SQPTITWSVGSDRLRNDG-FTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRALD 179 (226)
T ss_pred CCCeEEEEeccceeecCC-ccceeecccCcceeeEeeeeecccCCCCCcccEEecccccc
Confidence 478899987444443221 1111 1111000113456778888888889999987654
Done!