RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16426
(194 letters)
>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like. IG domains that cannot
be classified into one of IGv1, IGc1, IGc2, IG.
Length = 85
Score = 59.4 bits (144), Expect = 3e-12
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 67 AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQ 126
EG+ +TL C + P W K+ G+++A+ ++ + + LTI VT +
Sbjct: 6 VKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFS---VSRSGSTS-TLTISNVTPE 61
Query: 127 DFGAYKCVSKNSLGDTDGSIKLY 149
D G Y C + NS G L
Sbjct: 62 DSGTYTCAATNSSGSASSGTTLT 84
>gnl|CDD|214652 smart00409, IG, Immunoglobulin.
Length = 85
Score = 59.4 bits (144), Expect = 3e-12
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 67 AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQ 126
EG+ +TL C + P W K+ G+++A+ ++ + + LTI VT +
Sbjct: 6 VKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFS---VSRSGSTS-TLTISNVTPE 61
Query: 127 DFGAYKCVSKNSLGDTDGSIKLY 149
D G Y C + NS G L
Sbjct: 62 DSGTYTCAATNSSGSASSGTTLT 84
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 51.5 bits (124), Expect = 4e-08
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K KK K+ +KK++E +K K KK+ + K K ++
Sbjct: 386 KKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPS 429
Score = 49.2 bits (118), Expect = 3e-07
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+KK + KKV K+ E K+K+K+K K KK+ + K
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGK 424
Score = 48.0 bits (115), Expect = 8e-07
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 145 SIKLYGKKKKK-KKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
S K GK KK K EKK K+K++ KK+ + K K++K
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKP 428
Score = 48.0 bits (115), Expect = 8e-07
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K KK K + K+K++E K KK+ + K K++
Sbjct: 389 GKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 47.6 bits (114), Expect = 1e-06
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K +K+ K KK + +KK+K+K+K K KK+ K
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKN 421
Score = 46.1 bits (110), Expect = 4e-06
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 143 DGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+ KK K+ EK++K K+K K KK+ + K K++K
Sbjct: 385 EKKTGKPSKKVLAKRAEKKEKEKEKP---KVKKRHRDTKNIGKRRKPSGT 431
Score = 44.5 bits (106), Expect = 1e-05
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
K K K+ ++KEK+ +K K + + + K K++K +E
Sbjct: 390 KPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 39.2 bits (92), Expect = 6e-04
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 131 YKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKK 183
K S+ G + +KK+K+KEK KVKK+ + K K++K
Sbjct: 380 TKAPSEKKTGKPSKKVLAKRAEKKEKEKEK-PKVKKRHRDTKNIGKRRKPSGT 431
Score = 36.8 bits (86), Expect = 0.004
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 144 GSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKK-------KKKKKKKKVKEKK 193
G I+ Y ++ K + E + K K KK K KK KK+K+K+K K KK
Sbjct: 358 GKIERYIEEPLKARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKK 414
>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain. Ig: immunoglobulin (Ig) domain
found in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
this group are components of immunoglobulin, neuroglia,
cell surface glycoproteins, such as, T-cell receptors,
CD2, CD4, CD8, and membrane glycoproteins, such as,
butyrophilin and chondroitin sulfate proteoglycan core
protein. A predominant feature of most Ig domains is a
disulfide bridge connecting the two beta-sheets with a
tryptophan residue packed against the disulfide bond.
Length = 74
Score = 46.3 bits (109), Expect = 2e-07
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 74 TLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKC 133
TL C + P W K NG+ + LTI VT +D G Y C
Sbjct: 2 TLTCLASGPPPPTITWLK-NGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60
Query: 134 VSKNSLGDTDGSIK 147
V+ NS G S+
Sbjct: 61 VASNSAGTVSASVT 74
>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM).
Ig3_NCAM-1_like: domain similar to the third
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-1 (NCAM). NCAM plays important roles in
the development and regeneration of the central nervous
system, in synaptogenesis and neural migration. NCAM
mediates cell-cell and cell-substratum recognition and
adhesion via homophilic (NCAM-NCAM), and heterophilic
(NCAM-non-NCAM), interactions. NCAM is expressed as
three major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves Ig1, Ig2, and Ig3. By
this model, Ig1,and Ig2 mediate dimerization of NCAM
molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain.
Length = 95
Score = 46.1 bits (109), Expect = 4e-07
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 55 PPMIWIQNQLVGAME--GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAY 112
PP I + V A G +TL C ++ +P+ WTK +GE I G + D +
Sbjct: 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTK-DGEPIESGEEKYSFNEDGS- 58
Query: 113 KIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
++TI V K D Y C+++N G+ + I L
Sbjct: 59 ----EMTILDVDKLDEAEYTCIAENKAGEQEAEIHL 90
>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain.
Length = 90
Score = 45.7 bits (109), Expect = 4e-07
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 56 PMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIH 115
P + + V EG+ C P W K +G+ + +++ Y
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFK-DGQPLRSSDRFKVTYEGGTYT-- 57
Query: 116 MKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
LTI V D G Y CV+ NS G+ + S +L
Sbjct: 58 --LTISNVQPDDEGKYTCVATNSAGEAEASAEL 88
>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type.
Length = 63
Score = 44.3 bits (105), Expect = 8e-07
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 11/73 (15%)
Query: 69 EGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQD 127
EG +TL C +E P +I W K +G+ + + ++ + + LTIK+V+ +D
Sbjct: 1 EGQSVTLTCPAEGNPVPNIT-WLK-DGKPLPESNR---FVASGST-----LTIKSVSLED 50
Query: 128 FGAYKCVSKNSLG 140
G Y CV++NS G
Sbjct: 51 SGLYTCVAENSAG 63
>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain. This family contains
immunoglobulin-like domains.
Length = 74
Score = 43.1 bits (101), Expect = 3e-06
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 11/84 (13%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY-WTKENGEIIAQGSKYEPILLDNAYK 113
P+I + G +TL C +E P W + G
Sbjct: 1 KPVITVSPSPSVTSGGG-VTLTCSAEGGPPPPTISWYRNGSISGGSGGLGS--------- 50
Query: 114 IHMKLTIKAVTKQDFGAYKCVSKN 137
LT+ +VT +D G Y CV+ N
Sbjct: 51 SGSTLTLSSVTSEDSGTYTCVASN 74
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 44.2 bits (105), Expect = 1e-05
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+ ++ KEK K KKK E KK +K+KKKKK+KKK K ++KK
Sbjct: 369 NKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKK 411
Score = 43.4 bits (103), Expect = 3e-05
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKK 186
K KKK +EKK +K+K++ K+KKK KK+KKK +K
Sbjct: 381 KPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 42.6 bits (101), Expect = 5e-05
Identities = 19/38 (50%), Positives = 29/38 (76%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKK 184
+ Y K KKK++EK+ + +KKK++ KKK KK+KKK +K
Sbjct: 377 EKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 41.5 bits (98), Expect = 1e-04
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
K+K K +KK ++KK + +KKKKK+KKK KK+KKK ++
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 40.3 bits (95), Expect = 2e-04
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 156 KKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+K + KK++E+ +K+KKKKK+KKK KK+ K+ +
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGR 413
Score = 40.3 bits (95), Expect = 3e-04
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
K+K K K+K+ +KK ++ KKKKK+KKK KK+KKK K
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 40.0 bits (94), Expect = 3e-04
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 155 KKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+K K K K+++++ +K+KKKKK+KKK KK+K K +K
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 40.0 bits (94), Expect = 4e-04
Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 5/48 (10%)
Query: 151 KKKKKKKKEKEKKV-----KKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K++ K+ E+ K+ KKK+EE K +K+KKKKK+KKK KK K+K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKG 412
Score = 34.9 bits (81), Expect = 0.018
Identities = 16/44 (36%), Positives = 33/44 (75%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
G + K++ ++ +++K+K + KKK+++KK +K+KKKK ++KK
Sbjct: 361 GDELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKK 404
Score = 29.9 bits (68), Expect = 0.86
Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 162 KKVKKKKEEGKKK--KKKKKKKKKKKKKKVKEKKW 194
+++ K+ EE K+K K KKK+++KK +K K+KK
Sbjct: 366 EELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKK 400
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 44.1 bits (105), Expect = 1e-05
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K KK KK EK KK++EE K+KKKK KKK++++ +EK+
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKE 449
Score = 43.8 bits (104), Expect = 2e-05
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 139 LGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
L T+ I+ KK KK K+ K +K+ ++KK+KKKK KKK+ +E++
Sbjct: 392 LELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEE 446
Score = 43.8 bits (104), Expect = 2e-05
Identities = 16/55 (29%), Positives = 37/55 (67%)
Query: 139 LGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
G + K+ +K +KK +E+K +KKK+ KKK+++++++K+KK+ ++++
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEE 457
Score = 43.0 bits (102), Expect = 4e-05
Identities = 16/47 (34%), Positives = 37/47 (78%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+ K +KK+++EK++K KK KK+++++++K+KK+++K +E++
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEE 460
Score = 39.9 bits (94), Expect = 4e-04
Identities = 14/43 (32%), Positives = 36/43 (83%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK++++KKEK+KK K++ ++++++K+KK+++K+++ +E +
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Score = 37.6 bits (88), Expect = 0.002
Identities = 14/43 (32%), Positives = 36/43 (83%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++++KK+K+K+ KKKEE ++++K+KK+++K+++++ E++
Sbjct: 423 REEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEE 465
Score = 37.2 bits (87), Expect = 0.003
Identities = 14/43 (32%), Positives = 35/43 (81%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+KK+KKKK K K+++EE +K+KK+++K++++++ + ++++
Sbjct: 426 EKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468
Score = 37.2 bits (87), Expect = 0.004
Identities = 16/43 (37%), Positives = 37/43 (86%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+++KK+KK+K KKK+EE +++K+KK+++K++++++ +E+K
Sbjct: 424 EEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEK 466
Score = 36.8 bits (86), Expect = 0.005
Identities = 12/43 (27%), Positives = 35/43 (81%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+KKKK K+K+ ++++E+ KK+++K++++++ +++K +E++
Sbjct: 429 EKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471
Score = 36.4 bits (85), Expect = 0.006
Identities = 14/44 (31%), Positives = 35/44 (79%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K KKKE+E++ +K+K+E +K++++++ +++K++++ K+KK
Sbjct: 432 KKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 36.1 bits (84), Expect = 0.008
Identities = 16/44 (36%), Positives = 35/44 (79%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK+KKKK KK ++++EE K+KK+++K++++++ ++ KE++
Sbjct: 426 EKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEE 469
Score = 36.1 bits (84), Expect = 0.009
Identities = 13/48 (27%), Positives = 36/48 (75%)
Query: 146 IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ K+KKKK +KK ++++EE +KK+++K++++++ +++ +E++
Sbjct: 423 REEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEE 470
Score = 35.7 bits (83), Expect = 0.011
Identities = 13/43 (30%), Positives = 35/43 (81%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK K+KE++ +++KE+ +++K++++++ +++K++ +EKK
Sbjct: 431 KKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 34.9 bits (81), Expect = 0.020
Identities = 14/44 (31%), Positives = 34/44 (77%)
Query: 149 YGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KKK+E+E++ K+KKEE K++++++ +++K+++++ K+K
Sbjct: 432 KKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 33.0 bits (76), Expect = 0.088
Identities = 14/41 (34%), Positives = 31/41 (75%)
Query: 142 TDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKK 182
G K ++++K+KKE+EK+ ++++ E +K+++++KKKK
Sbjct: 435 FAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of
the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like:
domain similar to the third immunoglobulin (Ig)-like
domain of the L1 cell adhesion molecule (CAM). L1
belongs to the L1 subfamily of cell adhesion molecules
(CAMs) and is comprised of an extracellular region
having six Ig-like domains and five fibronectin type III
domains, a transmembrane region and an intracellular
domain. L1 is primarily expressed in the nervous system
and is involved in its development and function. L1 is
associated with an X-linked recessive disorder, X-linked
hydrocephalus, MASA syndrome, or spastic paraplegia type
1, that involves abnormalities of axonal growth. This
group also contains the chicken neuron-glia cell
adhesion molecule, Ng-CAM and human neurofascin.
Length = 71
Score = 40.8 bits (96), Expect = 2e-05
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYK 132
+ LEC +E P W K GE+ A +K+E N K L I V+++D G Y+
Sbjct: 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFE-----NFNKT---LKIDNVSEEDDGEYR 52
Query: 133 CVSKNSLGDTDGSI 146
C + NSLG +I
Sbjct: 53 CTASNSLGSARHTI 66
>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain. Members of the
immunoglobulin superfamily are found in hundreds of
proteins of different functions. Examples include
antibodies, the giant muscle kinase titin and receptor
tyrosine kinases. Immunoglobulin-like domains may be
involved in protein-protein and protein-ligand
interactions. The Pfam alignments do not include the
first and last strand of the immunoglobulin-like domain.
Length = 62
Score = 39.4 bits (92), Expect = 5e-05
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFG 129
G +TL C P+ W KE + + + +N LTI VT +D G
Sbjct: 1 GSSVTLTCSVSGPPQVDVTWFKEGKGLE-ESTTVGTD--ENRVSSIT-LTISNVTPEDSG 56
Query: 130 AYKCV 134
Y CV
Sbjct: 57 TYTCV 61
Score = 29.4 bits (66), Expect = 0.19
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 24 GDQMTLECHSEAYPKSINYWTKENGEII 51
G +TL C P+ W KE +
Sbjct: 1 GSSVTLTCSVSGPPQVDVTWFKEGKGLE 28
>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors and similar proteins. Ig1_Robo:
domain similar to the first immunoglobulin (Ig)-like
domain in Robo (roundabout) receptors. Robo receptors
play a role in the development of the central nervous
system (CNS), and are receptors of Slit protein. Slit is
a repellant secreted by the neural cells in the midline.
Slit acts through Robo to prevent most neurons from
crossing the midline from either side. Three mammalian
Robo homologs (robo1, -2, and -3), and three mammalian
Slit homologs (Slit-1,-2, -3), have been identified.
Commissural axons, which cross the midline, express low
levels of Robo; longitudinal axons, which avoid the
midline, express high levels of Robo. robo1, -2, and -3
are expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 100
Score = 39.8 bits (93), Expect = 9e-05
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE---IIAQGSKYEPILLDNA 111
PP I + +GD TL C +E P W K NG+ + I+L +
Sbjct: 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLK-NGQPLETDKDDPRSHRIVLPSG 59
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
+++ + D G Y CV+ NSLG
Sbjct: 60 SLFFLRVVHGRKGRSDEGVYVCVAHNSLG 88
>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like
domain of a follistatin-like molecule encoded by the
Mahya gene and similar proteins. Ig2_Follistatin_like:
domain similar to the second immunoglobulin (Ig)-like
domain found in a follistatin-like molecule encoded by
the CNS-related Mahya gene. Mahya genes have been
retained in certain Bilaterian branches during
evolution. They are conserved in Hymenoptera and
Deuterostomes, but are absent from other metazoan
species such as fruit fly and nematode. Mahya proteins
are secretory, with a follistatin-like domain
(Kazal-type serine/threonine protease inhibitor domain
and EF-hand calcium-binding domain), two Ig-like
domains, and a novel C-terminal domain. Mahya may be
involved in learning and memory and in processing of
sensory information in Hymenoptera and vertebrates.
Follistatin is a secreted, multidomain protein that
binds activins with high affinity and antagonizes their
signaling.
Length = 76
Score = 38.7 bits (90), Expect = 1e-04
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 74 TLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKC 133
+L CH+E P W K NG I + L+ N ++H I V +D GAY C
Sbjct: 2 SLRCHAEGIPLPRLTWLK-NGMDITPKLSKQLTLIANGSELH----ISNVRYEDTGAYTC 56
Query: 134 VSKNSLG 140
++KN G
Sbjct: 57 IAKNEAG 63
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 40.9 bits (96), Expect = 2e-04
Identities = 22/59 (37%), Positives = 28/59 (47%)
Query: 136 KNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
K + + K KKKKKK+K++ K + K K KK KK KKK K K E
Sbjct: 58 KKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVD 116
>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily.
Ig_2: subgroup of the immunoglobulin (Ig) domain found
in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
the Ig superfamily are components of immunoglobulin,
neuroglia, cell surface glycoproteins, such as T-cell
receptors, CD2, CD4, CD8, and membrane glycoproteins,
such as butyrophilin and chondroitin sulfate
proteoglycan core protein. A predominant feature of most
Ig domains is a disulfide bridge connecting the two
beta-sheets with a tryptophan residue packed against the
disulfide bond.
Length = 74
Score = 37.9 bits (88), Expect = 3e-04
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFG 129
G + TL C + P+ +W +G++I+ S+ ++ DN L I T +D G
Sbjct: 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSR--TLVYDNG-----TLDILITTVKDTG 53
Query: 130 AYKCVSKNSLGDTDGSIKL 148
++ C++ N+ G+ +++L
Sbjct: 54 SFTCIASNAAGEATATVEL 72
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 40.1 bits (94), Expect = 3e-04
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKKKKKKK KK K KK GK++K + K KK ++++++++K
Sbjct: 257 KKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKI 299
Score = 27.7 bits (62), Expect = 3.7
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K +K+KK KKK K K KK K++K + K K+ +
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQ 290
>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the
L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third
immunoglobulin (Ig)-like domain of the L1 cell adhesion
molecule (CAM). L1 belongs to the L1 subfamily of cell
adhesion molecules (CAMs) and is comprised of an
extracellular region having six Ig-like domains, five
fibronectin type III domains, a transmembrane region and
an intracellular domain. L1 is primarily expressed in
the nervous system and is involved in its development
and function. L1 is associated with an X-linked
recessive disorder, X-linked hydrocephalus, MASA
syndrome, or spastic paraplegia type 1, that involves
abnormalities of axonal growth. This group also contains
the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Length = 71
Score = 37.6 bits (87), Expect = 3e-04
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYK 132
+ LEC +E P +W + +G + +K L +N L + V + D G Y
Sbjct: 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKK---LNNNKT-----LQLDNVLESDDGEYV 52
Query: 133 CVSKNSLGDTDGS 145
C ++NS G
Sbjct: 53 CTAENSEGSARHH 65
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 39.3 bits (92), Expect = 4e-04
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++++KK+K+K+K+VKK+K+E K KK+K + K KKKK K+KK
Sbjct: 150 EEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Score = 35.8 bits (83), Expect = 0.005
Identities = 23/35 (65%), Positives = 27/35 (77%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKK 185
KKK+ KK++KEKK KK+K K KKKKKKKKKK
Sbjct: 159 KKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 31.6 bits (72), Expect = 0.16
Identities = 24/38 (63%), Positives = 28/38 (73%), Gaps = 4/38 (10%)
Query: 151 KKKKKKKKEKEKKVKKKKEE----GKKKKKKKKKKKKK 184
+KKKKK+ +KEKK KK K+E K KKKKKKKKKK
Sbjct: 156 EKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 31.2 bits (71), Expect = 0.19
Identities = 20/45 (44%), Positives = 32/45 (71%)
Query: 144 GSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
GS +K+ K EKE +V++++++ KKKKK+ KK+KK+KK K
Sbjct: 129 GSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDK 173
Score = 29.3 bits (66), Expect = 0.83
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 140 GDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
G DG G + + +KE KV+K+ E +++KK+KKKKK+ KK+K ++K
Sbjct: 119 GAPDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKD 172
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 39.5 bits (93), Expect = 5e-04
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+KK +KK+ K +K +K+E K KKK + KK K +
Sbjct: 411 RKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGE 452
Score = 38.8 bits (91), Expect = 0.001
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
+KK++K ++K +K + +K KKK + KK K + K
Sbjct: 415 RKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETK 454
Score = 38.4 bits (90), Expect = 0.001
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK +KK+++ EKK +K++ E KKK + KK K E K
Sbjct: 412 KKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETK 454
Score = 37.6 bits (88), Expect = 0.002
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++KK ++K++K +KK E+ + +K KKK + KK K
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPD 450
Score = 37.6 bits (88), Expect = 0.002
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K +KK++K ++K K++ E+ KKK + KK K + KK
Sbjct: 413 KLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKK 455
Score = 36.8 bits (86), Expect = 0.004
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 147 KLYGKKKK-KKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
KL K++K +KK EKE+ K ++ + KK K + KKV
Sbjct: 413 KLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 36.4 bits (85), Expect = 0.006
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 146 IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+KL+ K + +E+E + +KK +KK++K +KK +K + +K
Sbjct: 385 LKLHDKPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEK 432
Score = 27.6 bits (62), Expect = 4.9
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 144 GSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
G+I++Y K K + ++ + + ++KK +KK++K +K EK
Sbjct: 379 GAIEIYLKLHDKPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEK 427
>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Ig3_Robo: domain similar to the
third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Robo receptors play a role in
the development of the central nervous system (CNS), and
are receptors of Slit protein. Slit is a repellant
secreted by the neural cells in the midline. Slit acts
through Robo to prevent most neurons from crossing the
midline from either side. Three mammalian Robo homologs
(robo1, -2, and -3), and three mammalian Slit homologs
(Slit-1,-2, -3), have been identified. Commissural
axons, which cross the midline, express low levels of
Robo; longitudinal axons, which avoid the midline,
express high levels of Robo. robo1, -2, and -3 are
expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 69
Score = 37.0 bits (86), Expect = 5e-04
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 74 TLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKC 133
+C P W KE+GE+ + E IL D + L I+ VT D G+Y C
Sbjct: 2 EFQCEVGGDPVPTVLWRKEDGEL--PKGRAE-ILDDKS------LKIRNVTAGDEGSYTC 52
Query: 134 VSKNSLGDTDGSIKL 148
++N +G + S L
Sbjct: 53 EAENMVGKIEASASL 67
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 39.4 bits (93), Expect = 6e-04
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K +K + K K K +K K++ K+ K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 37.5 bits (88), Expect = 0.003
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K +K + + K + K +K K++ + K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 36.7 bits (86), Expect = 0.005
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
KL K KK K +K K++ +K K
Sbjct: 820 KLRYLADAPAKDPAGKKAAVKF---SRKTKQQYVASEKDGKA 858
Score = 34.4 bits (80), Expect = 0.035
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
+K + + K K+ K +K K++ +K K
Sbjct: 818 PEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 33.2 bits (77), Expect = 0.069
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
EK +K++ + K KK K +K ++
Sbjct: 816 EKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYV 850
Score = 33.2 bits (77), Expect = 0.080
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
K +K + ++ K +K K++ +K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEK 854
Score = 31.7 bits (73), Expect = 0.21
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 160 KEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+K +K + K KK K K K+
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQ 847
>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Ig2_Robo: domain similar to the
second immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Robo receptors play a role in
the development of the central nervous system (CNS), and
are receptors of Slit protein. Slit is a repellant
secreted by the neural cells in the midline. Slit acts
through Robo to prevent most neurons from crossing the
midline from either side. Three mammalian Robo homologs
(robo1, -2, and -3), and three mammalian Slit homologs
(Slit-1,-2, -3), have been identified. Commissural
axons, which cross the midline, express low levels of
Robo; longitudinal axons, which avoid the midline,
express high levels of Robo. robo1, -2, and -3 are
expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 86
Score = 37.0 bits (86), Expect = 7e-04
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 67 AMEGDQMTLECHS-EAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTK 125
G+ LEC +P+ W K+ + + I+ D L I K
Sbjct: 8 VAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVR-IVDDG------NLLIAEARK 60
Query: 126 QDFGAYKCVSKNSLG 140
D G YKCV+ N +G
Sbjct: 61 SDEGTYKCVATNMVG 75
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 38.9 bits (91), Expect = 9e-04
Identities = 15/41 (36%), Positives = 31/41 (75%)
Query: 146 IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKK 186
KL K++ +++KE+++ +K++K K KK+++KKKK+ +K
Sbjct: 545 WKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEK 585
Score = 31.5 bits (72), Expect = 0.28
Identities = 12/35 (34%), Positives = 28/35 (80%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKK 185
+K++K+ +++K+++K K++ +KKKK+ +K +K K
Sbjct: 556 EKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 30.8 bits (70), Expect = 0.50
Identities = 12/36 (33%), Positives = 26/36 (72%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K +K+ ++++E K+ K++K+ +K KK++ K+KK
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKK 581
Score = 30.8 bits (70), Expect = 0.50
Identities = 13/36 (36%), Positives = 27/36 (75%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKK 186
++K++K+ KE+K +K ++ ++KKKK+ +K +K K
Sbjct: 555 REKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 27.7 bits (62), Expect = 4.4
Identities = 13/41 (31%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKK---KKKVKEKKW 194
K + +++++++KEE + K++K+ +K KK KKK + +K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKL 586
>gnl|CDD|143194 cd05717, Ig1_Necl-1-3_like, First (N-terminal) immunoglobulin
(Ig)-like domain of the nectin-like molecules Necl-1 -
Necl-3 (also known as cell adhesion molecules CADM3,
CADM1, and CADM2 respectively). Ig1_Necl-1-3_like:
N-terminal immunoglobulin (Ig)-like domain of the
nectin-like molecules Necl-1 (also known as cell
adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3
(CADM2). At least five nectin-like molecules have been
identified (Necl-1 - Necl-5). They all have an
extracellular region containing three Ig-like domains, a
transmembrane region, and a cytoplasmic region. The
N-terminal Ig-like domain of the extracellular region
belongs to the V-type subfamily of Ig domains, is
essential to cell-cell adhesion, and plays a part in the
interaction with the envelope glycoprotein D of various
viruses. Necl-1, Necl-2, and Necl-3 have
Ca(2+)-independent homophilic and heterophilic cell-cell
adhesion activity. Necl-1 is specifically expressed in
neural tissue, and is important to the formation of
synapses, axon bundles, and myelinated axons. Necl-2 is
expressed in a wide variety of tissues, and is a
putative tumour suppressor gene, which is downregulated
in aggressive neuroblastoma. Necl-3 accumulates in
central and peripheral nervous system tissue, and has
been shown to selectively interact with
oligodendrocytes. This group also contains Class-I
MHC-restricted T-cell-associated molecule (CRTAM), whose
expression pattern is consistent with its expression in
Class-I MHC-restricted T-cells.
Length = 95
Score = 36.6 bits (85), Expect = 0.001
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 59 WIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI---- 114
Q+ V +EG TL+C + S W+ N + + K L DN ++
Sbjct: 3 VTQDVTV--VEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDK--RALRDNRIQLVNFS 58
Query: 115 --HMKLTIKAVTKQDFGAYKC 133
+ ++I V+ D G Y C
Sbjct: 59 ANELSISISNVSLSDEGRYTC 79
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 37.0 bits (86), Expect = 0.001
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
K+ KEK K+ K+KK++ KKKKKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 34.7 bits (80), Expect = 0.009
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 162 KKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+V K+K + KK+KKKKKKKKKKK K KK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKK 133
Score = 34.3 bits (79), Expect = 0.013
Identities = 23/37 (62%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
K+ K+K K+KK KKKK KKKKKKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKK---KKKKKKKTSKKAAKKKK 135
Score = 34.3 bits (79), Expect = 0.014
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 146 IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKK 180
+K K+K K+KK+K+KK KKKK++ KK KKKK
Sbjct: 101 VKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 33.5 bits (77), Expect = 0.021
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKK 184
K+ K+K +++K+ KKKK++ KKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 32.7 bits (75), Expect = 0.040
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
E++K VK+ +E K+KK+KKKKKKKKKKK +K
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKA 130
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 37.5 bits (87), Expect = 0.001
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 141 DTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKK 178
+K + KK KKKK E +K+ KKKK+E KKKKK+
Sbjct: 132 SDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 34.4 bits (79), Expect = 0.015
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
K EKK KKKK E K++KKKKK+KKKKKK+
Sbjct: 138 KGHEKKHKKKKHEDDKERKKKKKEKKKKKKR 168
Score = 32.1 bits (73), Expect = 0.094
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
Query: 143 DGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
S L G +KK KK KK E+ K++KKKKK+KKKKKK+ E
Sbjct: 132 SDSEGLKGHEKKHKK--------KKHEDDKERKKKKKEKKKKKKRHSPEHP 174
Score = 28.6 bits (64), Expect = 1.3
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 14/60 (23%)
Query: 148 LYGKKKKKKKKEKEKKVKKKK------------EEGKKKKKKKKKKK--KKKKKKVKEKK 193
++ + KKK K K KK + + +G +KK KKKK + K++KKK KEKK
Sbjct: 104 MHIQPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKK 163
>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of
peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin
(Ig)-like domain in peroxidasin. Peroxidasin has a
peroxidase domain and interacting extracellular motifs
containing four Ig-like domains. It has been suggested
that peroxidasin is secreted, and has functions related
to the stabilization of the extracellular matrix. It may
play a part in various other important processes such as
removal and destruction of cells, which have undergone
programmed cell death, and protection of the organism
against non-self.
Length = 69
Score = 35.6 bits (82), Expect = 0.002
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 16/78 (20%)
Query: 75 LECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMK----LTIKAVTKQDFGA 130
+ C ++ P+ W K+ ++ G K H+ L I+ V D G
Sbjct: 3 IPCSAQGDPEPTITWNKDGVQVTESG------------KFHISPEGYLAIRDVGVADQGR 50
Query: 131 YKCVSKNSLGDTDGSIKL 148
Y+CV++N++G S+ L
Sbjct: 51 YECVARNTIGYASVSMVL 68
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 36.7 bits (86), Expect = 0.002
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+KE K +K E KK +K K K +KKK KK + K
Sbjct: 65 KKELKAWEKAE--KKAEKAKAKAEKKKAKKEEPKP 97
Score = 34.8 bits (81), Expect = 0.010
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKK 186
KK+ K EK +K K +K + K +KKK KK++ K +
Sbjct: 65 KKELKAWEKAEK-KAEKAKAKAEKKKAKKEEPKPR 98
Score = 34.0 bits (79), Expect = 0.017
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
KK+ K EK KK ++ K +KKK KK++ K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 32.1 bits (74), Expect = 0.081
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKK 176
K + K +KK +K K K KKK ++ + K +
Sbjct: 69 KAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 30.2 bits (69), Expect = 0.34
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKK 181
K +K ++K +K K K E+ K KK++ K +
Sbjct: 68 LKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 37.9 bits (88), Expect = 0.002
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 149 YGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
Y KK K KKK K K K KKK K K KK KK+
Sbjct: 747 YEKKTKAKKKSASTKGKAAK--TVKKKSKAKSKKTTKKRAGP 786
Score = 33.3 bits (76), Expect = 0.071
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 161 EKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
EKK K KK+ K K K KKK K K K+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTT 780
Score = 31.7 bits (72), Expect = 0.22
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKK 181
K KKK K K K KKK + K KK KK+
Sbjct: 750 KTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 31.7 bits (72), Expect = 0.24
Identities = 17/35 (48%), Positives = 18/35 (51%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
EK+ K KKK K K K KKK K K K KK
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKK 782
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 37.2 bits (87), Expect = 0.002
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K + + E++ KK++ G+K+K ++++K K K K++K
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRK 148
Score = 36.4 bits (85), Expect = 0.004
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+++ KK+E + +K +K K K +KK+K + + E +
Sbjct: 115 AEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQ 157
Score = 36.1 bits (84), Expect = 0.006
Identities = 10/43 (23%), Positives = 28/43 (65%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ +++ K++E +K+K +++K K K +KK+K + ++ +
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPE 155
Score = 34.9 bits (81), Expect = 0.015
Identities = 10/43 (23%), Positives = 29/43 (67%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ ++ +++ K+++ +KE+ ++++K K K +KK+K + +K
Sbjct: 111 QAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQK 153
Score = 34.1 bits (79), Expect = 0.021
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ +++ KK + K+K ++K K K +KK+K + K +
Sbjct: 114 RAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEP 156
Score = 33.7 bits (78), Expect = 0.031
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K + ++ +++ KK + E+ K ++++K K K +KK K +
Sbjct: 109 KVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPR 150
Score = 33.7 bits (78), Expect = 0.032
Identities = 9/42 (21%), Positives = 25/42 (59%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K + ++ E++ K ++ E +K ++++K K K +K ++ +
Sbjct: 109 KVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPR 150
Score = 33.7 bits (78), Expect = 0.037
Identities = 9/45 (20%), Positives = 26/45 (57%)
Query: 149 YGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ +++ +K + +K++ ++++K K K +KK+K +K
Sbjct: 110 VQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKP 154
Score = 31.8 bits (73), Expect = 0.15
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ KK++ EK+ ++E K K +KK+K + +K +
Sbjct: 117 QQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHT 159
Score = 30.7 bits (70), Expect = 0.38
Identities = 10/40 (25%), Positives = 26/40 (65%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+K+ +E + KV+ ++ E + KK++ +K+K ++ ++ K
Sbjct: 100 RKQLEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPK 139
Score = 27.2 bits (61), Expect = 4.4
Identities = 7/40 (17%), Positives = 22/40 (55%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
++ +K++ ++ +K K + +KK+K + +K + +
Sbjct: 122 REAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPV 161
Score = 26.8 bits (60), Expect = 5.9
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
K++ +KEK + ++K + +KK+K + +K + +
Sbjct: 121 KREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPV 161
Score = 26.8 bits (60), Expect = 5.9
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+ +K+K ++ K K + +KK+K + +K + + V +
Sbjct: 123 EAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSD 163
>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain
found in Perlecan and similar proteins.
Ig3_Perlecan_like: domain similar to the third
immunoglobulin (Ig)-like domain found in Perlecan.
Perlecan is a large multi-domain heparin sulfate
proteoglycan, important in tissue development and
organogenesis. Perlecan can be represented as 5 major
portions; its fourth major portion (domain IV) is a
tandem repeat of immunoglobulin-like domains (Ig2-Ig15),
which can vary in size due to alternative splicing.
Perlecan binds many cellular and extracellular ligands.
Its domain IV region has many binding sites. Some of
these have been mapped at the level of individual
Ig-like domains, including a site restricted to the Ig5
domain for heparin/sulfatide, a site restricted to the
Ig3 domain for nidogen-1 and nidogen-2, a site
restricted to Ig4-5 for fibronectin, and sites
restricted to Ig2 and to Ig13-15 for fibulin-2.
Length = 85
Score = 35.2 bits (81), Expect = 0.003
Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 16/84 (19%)
Query: 69 EGDQMTLECHSEAYPKSINY---WTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTK 125
G ++ C A KS Y WT+ G L A + LTI+ V
Sbjct: 15 PGADVSFIC--RAKSKSPAYTLVWTRVGGG-----------LPSRAMDFNGILTIRNVQL 61
Query: 126 QDFGAYKCVSKNSLGDTDGSIKLY 149
D G Y C N L + + LY
Sbjct: 62 SDAGTYVCTGSNMLDTDEATATLY 85
>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin.
Ig5_Contactin_like: Fifth Ig domain of contactins.
Contactins are neural cell adhesion molecules and are
comprised of six Ig domains followed by four fibronectin
type III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5
is expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack
of contactin-5 (NB-2) results in an impairment of
neuronal act ivity in the rat auditory system.
Contactin-5 is highly expressed in the adult human brain
in the occipital lobe and in the amygdala. Contactin-1
is differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 73
Score = 35.1 bits (81), Expect = 0.003
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFG 129
G + +EC +A PK W+K E++ S+ + + L I VTK D G
Sbjct: 1 GGDVIIECKPKAAPKPTISWSK-GTELLTNSSRI--CIWPDG-----SLEILNVTKSDEG 52
Query: 130 AYKCVSKNSLGDTDGS 145
Y C ++N G + +
Sbjct: 53 KYTCFAENFFGKANST 68
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 36.6 bits (85), Expect = 0.003
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K Y +K+K K K+K+ K KK K++ KK KK K +KK +K+ ++K
Sbjct: 76 KEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKL 122
Score = 35.4 bits (82), Expect = 0.008
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K KKKK +K+K K K++ KK K +KK +K+ + K+++
Sbjct: 83 KWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLT 126
Score = 34.7 bits (80), Expect = 0.013
Identities = 24/43 (55%), Positives = 30/43 (69%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKKKK+ E+ +KVKK+ EE +K K KKKK KKKK K +K
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKD 103
Score = 34.3 bits (79), Expect = 0.021
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K KKKK K+K+KK KK ++ +KK +K+ + K + K +
Sbjct: 90 KSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSE 131
Score = 33.5 bits (77), Expect = 0.032
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+K K KKK+ +KK K K++ KK K +KK +K+ + K +
Sbjct: 82 QKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
Score = 33.5 bits (77), Expect = 0.033
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+K KK+ +EK+K KKK+ KKK K K KK KK K ++K
Sbjct: 72 EKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKD 114
Score = 33.1 bits (76), Expect = 0.043
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+K KK+ E+++K K KK++ KKKK K K KK KK EKK
Sbjct: 71 IEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKK 113
Score = 32.7 bits (75), Expect = 0.061
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K KKKK K+K+ K K KK++ K K +KK +K+ + K K
Sbjct: 85 KWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTK 127
Score = 32.7 bits (75), Expect = 0.062
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK KKKK+K+K K K++ K +KK +K+ + K + K
Sbjct: 88 KKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYS 130
Score = 32.0 bits (73), Expect = 0.11
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ +K KKE E+K K K ++ K KKKK K K KK KK + +
Sbjct: 69 EEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSE 111
Score = 32.0 bits (73), Expect = 0.12
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKKK KKK+ + K KK ++ K +KK +K+ + K + + +
Sbjct: 87 KKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSY 129
Score = 30.8 bits (70), Expect = 0.32
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
K KKKK K K+K+ K K E K +K+ + K + K
Sbjct: 88 KKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSY 129
Score = 28.9 bits (65), Expect = 1.4
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K KK K K K+ +KK K +++ +K+ + K + K +
Sbjct: 90 KSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLST 135
Score = 28.5 bits (64), Expect = 1.7
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 146 IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K KKK K K +K+ K K E+ +K+ + K + K
Sbjct: 88 KKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLST 135
Score = 27.0 bits (60), Expect = 5.9
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K KK K+ +K KK ++E + K + K + + E K
Sbjct: 98 DKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELK 140
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 36.2 bits (84), Expect = 0.003
Identities = 22/47 (46%), Positives = 36/47 (76%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ + +K+++KK++ E+K KK+ + +KKK+KKKKKKK KK KE+K
Sbjct: 66 EEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEK 112
Score = 28.9 bits (65), Expect = 0.96
Identities = 17/42 (40%), Positives = 32/42 (76%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK+ + +E ++K ++KK + ++K KK+ K++KKK+K K+KK
Sbjct: 60 KKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKK 101
Score = 27.3 bits (61), Expect = 3.0
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+K KK+ K +K K+KK++ KK KK KK++K+ K +E
Sbjct: 81 EKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEE 120
Score = 26.9 bits (60), Expect = 4.8
Identities = 15/41 (36%), Positives = 30/41 (73%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK+ K++K+K+ KKKK++ KK KK++K+ K ++ +++
Sbjct: 85 KKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEE 125
>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk
receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth
domain of Trk receptors TrkA, TrkB and TrkC, this is an
immunoglobulin (Ig)-like domain which binds to
neurotrophin. The Trk family of receptors are tyrosine
kinase receptors. They are activated by dimerization,
leading to autophosphorylation of intracellular tyrosine
residues, and triggering the signal transduction
pathway. TrkA, TrkB, and TrkC share significant sequence
homology and domain organization. The first three
domains are leucine-rich domains. The fourth and fifth
domains are Ig-like domains playing a part in ligand
binding. TrkA, Band C mediate the trophic effects of the
neurotrophin Nerve growth factor (NGF) family. TrkA is
recognized by NGF. TrKB is recognized by brain-derived
neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC
is recognized by NT-3. NT-3 is promiscuous as in some
cell systems it activates TrkA and TrkB receptors. TrkA
is a receptor found in all major NGF targets, including
the sympathetic, trigeminal, and dorsal root ganglia,
cholinergic neurons of the basal forebrain and the
striatum. TrKB transcripts are found throughout multiple
structures of the central and peripheral nervous
systems. The TrkC gene is expressed throughout the
mammalian nervous system.
Length = 90
Score = 34.8 bits (80), Expect = 0.004
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 69 EGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDF 128
EG T+ C +E P W +I + L+ I L + +T +
Sbjct: 14 EGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRT----DTLETTVDI-YNLQLSNITSETQ 68
Query: 129 GAYKCVSKNSLGDTDGSIKL 148
C ++N +G + S+++
Sbjct: 69 TTVTCTAENPVGQANVSVQV 88
Score = 28.3 bits (63), Expect = 0.90
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 23 EGDQMTLECHSEAYPKSINYWTKENGEIIAQVPPMIW-----IQNQLVGAMEGDQMTLEC 77
EG T+ C +E P W +I + QL Q T+ C
Sbjct: 14 EGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTC 73
Query: 78 HSE 80
+E
Sbjct: 74 TAE 76
>gnl|CDD|143250 cd05773, Ig8_hNephrin_like, Eighth immunoglobulin-like domain of
nephrin. Ig8_hNephrin_like: domain similar to the
eighth immunoglobulin-like domain in human nephrin.
Nephrin is an integral component of the slit diaphragm,
and is a central component of the glomerular
ultrafilter. Nephrin plays a structural role, and has a
role in signaling. Nephrin is a transmembrane protein
having a short intracellular portion, and an
extracellular portion comprised of eight Ig-like
domains, and one fibronectin type III-like domain. The
extracellular portions of nephrin, from neighboring foot
processes of separate podocyte cells, may interact with
each other, and in association with other components of
the slit diaphragm, form a porous molecular sieve within
the slit pore. The intracellular portion of nephrin is
associated with linker proteins, which connect nephrin
to the actin cytoskeleton. The intracellular portion is
tyrosine phosphorylated, and mediates signaling from the
slit diaphragm into the podocytes.
Length = 109
Score = 35.3 bits (81), Expect = 0.004
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 67 AMEGD---QMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMK-LTIKA 122
A GD L C ++ P+ W K + +YE +H LTI
Sbjct: 17 ASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTG-TVHTSILTIIN 75
Query: 123 VTK-QDFGAYKCVSKNSLGDTDGSIKL 148
V+ D+ + C + NSLG+ I+L
Sbjct: 76 VSAALDYALFTCTAHNSLGEDSLDIQL 102
>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain. This domain contains
immunoglobulin-like domains.
Length = 80
Score = 34.7 bits (80), Expect = 0.004
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 17/84 (20%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
P++ +V EG+ +TL C + P W K +G ++
Sbjct: 1 KPVLTPSPTVV--FEGEDVTLTCSAPGNPPPNYTWYK-DGVPLSSSQN------------ 45
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNS 138
V+ +D G Y CV+ N
Sbjct: 46 --GFFTPNVSAEDSGTYTCVASNG 67
Score = 29.7 bits (67), Expect = 0.23
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI 50
P++ +V EG+ +TL C + P W K+ +
Sbjct: 1 KPVLTPSPTVV--FEGEDVTLTCSAPGNPPPNYTWYKDGVPL 40
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 36.5 bits (85), Expect = 0.005
Identities = 15/36 (41%), Positives = 28/36 (77%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKK 186
KK++KKK+E+E K+ K E ++K ++K++KK+ +K
Sbjct: 287 KKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 34.9 bits (81), Expect = 0.014
Identities = 12/37 (32%), Positives = 26/37 (70%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
+KK++KKKE+ + K +++K ++K++KK+ +K
Sbjct: 286 EKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 31.8 bits (73), Expect = 0.19
Identities = 15/47 (31%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKK----KKKKKKVKEKK 193
K K ++E++++ ++KKEE KK++++ K K +++K + KE+K
Sbjct: 271 KILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERK 317
Score = 31.5 bits (72), Expect = 0.24
Identities = 10/37 (27%), Positives = 28/37 (75%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
++KK++K+KE++ K + ++++K ++K++KK+ +
Sbjct: 285 QEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQAR 321
Score = 31.5 bits (72), Expect = 0.25
Identities = 14/47 (29%), Positives = 33/47 (70%), Gaps = 4/47 (8%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKK----KKKKKKKKKKKVKEKK 193
+++++++ +EKK +KKKEE + K K +++K ++K++K + +K
Sbjct: 276 AEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 31.1 bits (71), Expect = 0.35
Identities = 15/43 (34%), Positives = 32/43 (74%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K +++E+EK +K +EE +++ ++KK++KKK++++ K K
Sbjct: 260 KVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAK 302
Score = 29.5 bits (67), Expect = 0.93
Identities = 12/53 (22%), Positives = 34/53 (64%)
Query: 141 DTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
D ++KL + +K K +E++ +K + +++++++ ++KK++KKK + +
Sbjct: 246 DKLANLKLSPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREA 298
Score = 29.5 bits (67), Expect = 1.0
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 6/49 (12%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGK------KKKKKKKKKKKKKKKKVKEKK 193
+K K ++E+E+K+ K EE + KK++KKK++++ K K+ ++
Sbjct: 259 RKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEE 307
Score = 29.1 bits (66), Expect = 1.5
Identities = 12/43 (27%), Positives = 29/43 (67%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+K K +E+E++ K E +++++ ++KK++KKK++ + K
Sbjct: 258 LRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKL 300
>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of
protein tyrosine kinase (PTK) 7, also known as CCK4.
Ig2_PTK7: domain similar to the second immunoglobulin
(Ig)-like domain in protein tyrosine kinase (PTK) 7,
also known as CCK4. PTK7 is a subfamily of the receptor
protein tyrosine kinase family, and is referred to as an
RPTK-like molecule. RPTKs transduce extracellular
signals across the cell membrane, and play important
roles in regulating cell proliferation, migration, and
differentiation. PTK7 is organized as an extracellular
portion having seven Ig-like domains, a single
transmembrane region, and a cytoplasmic tyrosine
kinase-like domain. PTK7 is considered a pseudokinase as
it has several unusual residues in some of the highly
conserved tyrosine kinase (TK) motifs; it is predicted
to lack TK activity. PTK7 may function as a
cell-adhesion molecule. PTK7 mRNA is expressed at high
levels in placenta, melanocytes, liver, lung, pancreas,
and kidney. PTK7 is overexpressed in several cancers,
including melanoma and colon cancer lines.
Length = 77
Score = 34.1 bits (78), Expect = 0.006
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMK---LTIKAVTKQDFG 129
+TL CH + +P+ W ++ G ++ G Y + K LT+++ D G
Sbjct: 1 VTLRCHIDGHPRPTYQWFRD-GTPLSDGQ--------GNYSVSSKERTLTLRSAGPDDSG 51
Query: 130 AYKCVSKNSLG 140
Y C + N+ G
Sbjct: 52 LYYCCAHNAFG 62
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 36.7 bits (84), Expect = 0.006
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K + + ++ + ++K E +KKK++ KKK KKK +EKK
Sbjct: 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
Score = 35.1 bits (80), Expect = 0.020
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK ++ K+K KKK EE KK + K + + + + +
Sbjct: 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363
Score = 34.3 bits (78), Expect = 0.038
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK + K + + + E ++K + +KKK++ KKK K
Sbjct: 1342 KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK 1384
Score = 34.0 bits (77), Expect = 0.053
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK ++ +K + KKK EE KKK KKK ++ KK + K
Sbjct: 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAK 1349
Score = 33.6 bits (76), Expect = 0.063
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKK--KKKKVKEKK 193
KKK ++ +K + K + E + + ++K + +KKK + KK
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
Score = 33.2 bits (75), Expect = 0.079
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ + +EK + +KKKEE KKK KKK ++KKK + KK
Sbjct: 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK 1398
Score = 32.8 bits (74), Expect = 0.10
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK + K+K ++ KKK + KKK ++ KK + K + +
Sbjct: 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAA 1356
Score = 32.4 bits (73), Expect = 0.14
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ ++K + EK+K+ KKK + KKK ++KKK + KKK +E K
Sbjct: 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
Score = 32.4 bits (73), Expect = 0.17
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++K + ++K+++ KKK + KKK ++KKK + KKK ++KK
Sbjct: 1363 EEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK 1405
Score = 32.0 bits (72), Expect = 0.18
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ + E++ + +KK+E KKK KKK ++KKK E K
Sbjct: 1355 AADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK 1397
Score = 32.0 bits (72), Expect = 0.20
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK ++K+K + KKK EE KKK + KK KKK + KK
Sbjct: 1384 KKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKK 1425
Score = 32.0 bits (72), Expect = 0.20
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK ++ +K + KKK EE KKK + KK + KKK + KK
Sbjct: 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK 1517
Score = 31.6 bits (71), Expect = 0.30
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK K+K ++ KK E K + + + + ++K + +
Sbjct: 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAE 1370
Score = 30.9 bits (69), Expect = 0.45
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K ++ +K ++ KKK EE KK ++ +KK + KK+ +E K
Sbjct: 1660 KIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK 1702
Score = 30.9 bits (69), Expect = 0.51
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+KKK + +K+ + KK +E KKK ++ KKK KKK +E K
Sbjct: 1300 EKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK 1342
Score = 30.9 bits (69), Expect = 0.52
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+KKK++ K+K KKK EE KK + KKK ++ KKK + KK
Sbjct: 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKK 1412
Score = 30.5 bits (68), Expect = 0.62
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK ++ K+K ++KK KK + KKK ++KKK +KK
Sbjct: 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKK 1439
Score = 30.5 bits (68), Expect = 0.65
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK +K+ + KKK +E KKK ++ KKK + KK KK
Sbjct: 1377 KKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418
Score = 30.5 bits (68), Expect = 0.70
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK ++K+K + KKK EE KK + KKK ++ KK + +KK
Sbjct: 1424 KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
Score = 30.1 bits (67), Expect = 0.83
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK ++ +K + KKK EE KK + KKK ++ KKK + KK
Sbjct: 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKK 1504
Score = 30.1 bits (67), Expect = 0.86
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ KK + +K+ + KK +E KKK ++ KKK + KK + KK
Sbjct: 1468 EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK 1510
Score = 30.1 bits (67), Expect = 0.94
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK + K+K ++ KKK +E KK KKK + KKK ++KK
Sbjct: 1390 KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432
Score = 30.1 bits (67), Expect = 0.96
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK ++ +K + KKK EE KK ++ KKK ++ KK +KK
Sbjct: 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
Score = 30.1 bits (67), Expect = 0.96
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK ++ +K ++ KKK EE KK + KKK ++ KK +KK
Sbjct: 1450 KKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK 1491
Score = 29.7 bits (66), Expect = 0.98
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 146 IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+K KKK + K+K +KKK + KKK ++ KK + KKK +E K
Sbjct: 1410 LKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457
Score = 29.7 bits (66), Expect = 1.2
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK+ ++K+K +++KK +EE K K ++ KK ++ KKK +E K
Sbjct: 1639 KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
Score = 29.3 bits (65), Expect = 1.3
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK + +K KKK +E KKK ++KKK + KKK + KK
Sbjct: 1404 KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
Score = 29.3 bits (65), Expect = 1.3
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK ++ +K ++ +KK E KK+ ++ KK ++ KKK E+K
Sbjct: 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK 1715
Score = 29.3 bits (65), Expect = 1.5
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 151 KKKKKKKKEKEKKVK----KKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K ++ KK +E K K KK EE +KK + KK+ ++ KK +E K
Sbjct: 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELK 1708
Score = 29.0 bits (64), Expect = 1.8
Identities = 18/43 (41%), Positives = 32/43 (74%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK+ ++K+K +++KK +EE K K ++ KK+ ++ KKK +E K
Sbjct: 1708 KKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
Score = 29.0 bits (64), Expect = 1.9
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK ++ K+ E+ KK E KK+ ++ KK ++ KKK+ +EKK
Sbjct: 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
Score = 29.0 bits (64), Expect = 1.9
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KK + K+K ++ KKK +E KK + KKK + KK + +K
Sbjct: 1482 AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
Score = 29.0 bits (64), Expect = 2.3
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK ++ +K+ + +KK+ EE KK ++ KKK+ ++KKK + KK
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
Score = 28.6 bits (63), Expect = 2.5
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK + +K+ + KKK +E KKK ++ KK + KKK + KK
Sbjct: 1417 KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458
Score = 28.6 bits (63), Expect = 2.5
Identities = 16/42 (38%), Positives = 30/42 (71%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK+ ++ +K +++KKK+ E KKK ++ KK +++ K K +E K
Sbjct: 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAK 1736
Score = 28.2 bits (62), Expect = 3.2
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 151 KKKKKKKKEKEKKVK----KKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K + +KK++E K K KKK E KKK + KKK ++ KKK E K
Sbjct: 1365 KAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELK 1411
Score = 28.2 bits (62), Expect = 3.2
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ KK ++ +K+ + KK +E KKK ++ KK + KKK + KK
Sbjct: 1455 EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKK 1497
Score = 28.2 bits (62), Expect = 4.0
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++KKK E +K +KKK + KKK ++ KK + KKK +E K
Sbjct: 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1328
Score = 27.8 bits (61), Expect = 5.1
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++KKK + K+ + KKK +E KKK ++ KK + KKK + KK
Sbjct: 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1329
Score = 27.4 bits (60), Expect = 5.6
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+KKK + +K+ + KK +E KKK ++ KK ++ KKK + KK
Sbjct: 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
Score = 27.4 bits (60), Expect = 5.8
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
KKK ++ K+K + KK E KK + KK ++ KK + K+
Sbjct: 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKK 1529
Score = 27.4 bits (60), Expect = 5.9
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK ++ K+KE + KKK EE KK +++ K K ++ KK +E K
Sbjct: 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK 1674
Score = 27.4 bits (60), Expect = 6.9
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK ++ KK +E+ K EE KK ++ KKK ++ KK + EKK
Sbjct: 1647 KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689
Score = 27.0 bits (59), Expect = 7.8
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+KK + +KE + KK EE KKK+ ++KKK ++ KK +E K
Sbjct: 1687 EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENK 1729
Score = 27.0 bits (59), Expect = 8.9
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK ++ K+ E++ K K E KK ++ KKK ++ KK +++K
Sbjct: 1646 KKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688
Score = 27.0 bits (59), Expect = 8.9
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K ++ +K ++ KK ++KK+ + KK ++KKK + KKK +E K
Sbjct: 1273 KAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAK 1315
Score = 27.0 bits (59), Expect = 8.9
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK +++ K K + KK EE KKK ++ KK ++ +KK + K
Sbjct: 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 36.2 bits (84), Expect = 0.006
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
+ K K K E++KK + + KKK+KK K +++ +
Sbjct: 355 EKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 35.5 bits (82), Expect = 0.012
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+ +K K++ K K K E KK++ + ++KKK+KK K ++
Sbjct: 348 KRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSER 390
Score = 35.1 bits (81), Expect = 0.015
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K+K K K K + KKE + ++KKK+KK K +++ +
Sbjct: 354 KEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 35.1 bits (81), Expect = 0.017
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+K K+K + K K E KK++ + ++KKK+KK E++
Sbjct: 351 EKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERR 391
Score = 34.3 bits (79), Expect = 0.027
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+K K + K ++ K+E + ++KKK+KK K ++ +
Sbjct: 354 KEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 33.5 bits (77), Expect = 0.053
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+K K+K + K K ++++ ++ + ++KKK+KK K +
Sbjct: 351 EKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGL 393
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 36.2 bits (84), Expect = 0.006
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
+ +KK+K KE+ KKK +E K K KK K KK
Sbjct: 246 SRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
Score = 35.4 bits (82), Expect = 0.011
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 156 KKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ EKK K K+E KKK K+ K K KK K K
Sbjct: 244 AESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMK 281
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 35.9 bits (83), Expect = 0.007
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ + + K K K E+ KK K K K K K K KVK +
Sbjct: 73 PETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQP 115
Score = 35.9 bits (83), Expect = 0.007
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K+K + EKK KK K + K K K K K K + K K K
Sbjct: 82 PKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSK 123
Score = 31.7 bits (72), Expect = 0.18
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+K K ++K KK K K + K K K K + K KK K
Sbjct: 85 KEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAA 126
Score = 31.3 bits (71), Expect = 0.24
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K + + E K KE+ K +KK KK K K K K + K
Sbjct: 68 KPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPK 110
Score = 31.3 bits (71), Expect = 0.26
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ K KEK +KK + K K K K K K K K + K
Sbjct: 76 PPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPK 118
Score = 30.5 bits (69), Expect = 0.43
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+K K +K+ +K K K + K K K K + K KK K
Sbjct: 85 KEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAK 127
Score = 30.1 bits (68), Expect = 0.53
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+++ K + + + K+K K +KK KK K K K K
Sbjct: 62 PPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKP 105
Score = 29.8 bits (67), Expect = 0.80
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ + K K+ K +++ KK K K K K K K K + K
Sbjct: 74 ETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPK 116
Score = 29.0 bits (65), Expect = 1.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+++ K E E + + K+K K +KK KK K K + K
Sbjct: 63 PEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPK 106
Score = 29.0 bits (65), Expect = 1.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
+KK KK K K K K K + K + K KK K K
Sbjct: 91 EKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKA 128
Score = 29.0 bits (65), Expect = 1.4
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
K KK K K K K K K + + K KK K K
Sbjct: 93 KPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 29.0 bits (65), Expect = 1.4
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K + + + K +E K +KK KK K K K K K K
Sbjct: 67 PKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKP 109
Score = 27.8 bits (62), Expect = 3.1
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ + ++K K +K+ K K K K K K K K K + K
Sbjct: 75 TPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKP 117
Score = 27.8 bits (62), Expect = 3.3
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK KK K + + K K K + + K KK K K +
Sbjct: 92 KKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQ 134
Score = 27.4 bits (61), Expect = 3.8
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
K +KK KK K K K K + K K + K KK K
Sbjct: 89 KPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 27.4 bits (61), Expect = 4.9
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+ + +++ K + E K K+K K +KK KK K K
Sbjct: 59 EPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPK 100
Score = 26.7 bits (59), Expect = 7.2
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ + + E++ K + E + K K+K K +KK K+ K
Sbjct: 56 PQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPK 98
Score = 26.7 bits (59), Expect = 7.3
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ +++ K + + K K+K K +KK KK K K K
Sbjct: 61 EPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKP 103
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 36.3 bits (84), Expect = 0.007
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 143 DGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
D + + K K K K+ +K KK + +K K K+ KKK
Sbjct: 766 DSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKV 811
Score = 34.7 bits (80), Expect = 0.021
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
KK K K +K+ + KK +K K K+ KKKV E
Sbjct: 772 EKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 34.7 bits (80), Expect = 0.025
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
G+KK K K K+ K KK K +K K K+ KK
Sbjct: 771 GEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 33.9 bits (78), Expect = 0.041
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 136 KNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
K G G + GKK + + KK K + KK +K KK K +K+
Sbjct: 744 KGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKI 797
Score = 33.9 bits (78), Expect = 0.042
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+++ KK E + E+ K K KK +K KK K +K
Sbjct: 754 RRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQK 796
Score = 33.6 bits (77), Expect = 0.056
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+KK K K +K +K K+ K +K K K+ K K
Sbjct: 771 GEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 33.6 bits (77), Expect = 0.058
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 14/55 (25%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKK--------------KKKKKKKKKKKKKKKVKEK 192
++K KK + KK K+++ GKK K K KK +K KK K
Sbjct: 739 REKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAK 793
Score = 32.8 bits (75), Expect = 0.12
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 140 GDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
GD + KK E + + +K+ K KK +K KK K ++
Sbjct: 745 GDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQK 796
Score = 29.7 bits (67), Expect = 0.96
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 143 DGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKK 183
+ K KK +K +K +K K K+ KKK
Sbjct: 772 EKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 36.3 bits (84), Expect = 0.008
Identities = 19/43 (44%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
++K++KKE+E+K K+EE ++++K++KK KK KKVKE
Sbjct: 42 EEKEEKKEEEEKTTDKEEEVDEEEEKEEKK--KKTKKVKETTT 82
Score = 35.5 bits (82), Expect = 0.014
Identities = 14/41 (34%), Positives = 31/41 (75%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+K++KK++E++ K+++ + +++K++KKKK KK K+ E
Sbjct: 43 EKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTE 83
Score = 30.1 bits (68), Expect = 0.78
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 132 KCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKK 185
K V K + + K K++++K +KE++V +++E+ +KKKK KK K+
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 35.8 bits (82), Expect = 0.011
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
K+ KK + +K + +++K +KK +K++K KK+ E
Sbjct: 107 DKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDE 148
Score = 31.6 bits (71), Expect = 0.23
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 141 DTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+ D ++ KK ++ + K EE K +KK +K++K KK + E
Sbjct: 101 NEDAALDKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDVE 151
>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar
proteins. Ig5_NCAM-1 like: domain similar to the fifth
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-1 (NCAM). NCAM plays important roles in
the development and regeneration of the central nervous
system, in synaptogenesis and neural migration. NCAM
mediates cell-cell and cell-substratum recognition and
adhesion via homophilic (NCAM-NCAM), and heterophilic
(NCAM-non-NCAM), interactions. NCAM is expressed as
three major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves Ig1, Ig2, and Ig3. By
this model, Ig1 and Ig2 mediate dimerization of NCAM
molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain. Also included in this group is
NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2
is differentially expressed in the developing and mature
olfactory epithelium (OE).
Length = 96
Score = 33.7 bits (77), Expect = 0.011
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEP--ILLDNAY 112
P + +++NQ A+E +Q+TL C +E P W + ++G K I++
Sbjct: 3 PKITYLENQT--AVELEQITLTCEAEGDPIPEITW-RRATRNFSEGDKSLDGRIVVRGHA 59
Query: 113 KIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
++ LT+K V D G Y C + N +G
Sbjct: 60 RVSS-LTLKDVQLTDAGRYDCEASNRIG 86
Score = 26.3 bits (58), Expect = 5.1
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYP 37
P + +++NQ A+E +Q+TL C +E P
Sbjct: 3 PKITYLENQT--AVELEQITLTCEAEGDP 29
>gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain. This domain is
found in antibodies as well as neural protein P0 and
CTL4 amongst others.
Length = 114
Score = 33.7 bits (77), Expect = 0.013
Identities = 22/101 (21%), Positives = 30/101 (29%), Gaps = 27/101 (26%)
Query: 67 AMEGDQMTLECH-SEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMK-------- 117
EG +TL C S + + YW K+ G E I+ + K
Sbjct: 13 VAEGGSVTLPCSFSSSSGSTSVYWYKQP-----LGKGPELIIHYVTSTPNGKVGPRFKGR 67
Query: 118 -------------LTIKAVTKQDFGAYKCVSKNSLGDTDGS 145
LTI + D G Y C N G+
Sbjct: 68 VTLSGNGSKNDFSLTISNLRLSDSGTYTCAVSNPNELVFGA 108
>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain
of M-protein (also known as myomesin-2).
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like
domain of M-protein (also known as myomesin-2).
M-protein is a structural protein localized to the
M-band, a transverse structure in the center of the
sarcomere, and is a candidate for M-band bridges.
M-protein is modular consisting mainly of repetitive
IG-like and fibronectin type III (FnIII) domains, and
has a muscle-type specific expression pattern. M-protein
is present in fast fibers.
Length = 92
Score = 33.3 bits (76), Expect = 0.013
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 48 GEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPIL 107
G++I +P ++ I MEG + L C P W K + +I + S++ +
Sbjct: 1 GKVIGGLPDVVTI-------MEGKTLNLTCTVFGNPDPEVIWFKNDQDI--ELSEHYSVK 51
Query: 108 LDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
L+ + LTIK VT +D G Y KN G
Sbjct: 52 LEQGK--YASLTIKGVTSEDSGKYSINVKNKYG 82
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 34.2 bits (79), Expect = 0.014
Identities = 11/39 (28%), Positives = 28/39 (71%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
GKK++ + + ++ K++ E+ K+ +K ++KK K+++K+
Sbjct: 89 GKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKE 127
Score = 31.1 bits (71), Expect = 0.13
Identities = 10/43 (23%), Positives = 26/43 (60%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+K+ KK + +++ ++ +K+K+ +K ++KK + +K
Sbjct: 84 KRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQK 126
Score = 31.1 bits (71), Expect = 0.16
Identities = 12/43 (27%), Positives = 29/43 (67%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKKK+K+ K++++ + + K++ +K+K+ +K ++ K K+
Sbjct: 81 KKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKR 123
Score = 28.8 bits (65), Expect = 0.88
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 9/58 (15%)
Query: 145 SIKLYGKKKKKKKKEKEKKVKKKKEEGKK---------KKKKKKKKKKKKKKKVKEKK 193
+K + K +K+ +++K KK+K GKK ++ K++ +K+K+ +K +EKK
Sbjct: 63 DLKKHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKK 120
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 34.1 bits (79), Expect = 0.014
Identities = 16/35 (45%), Positives = 29/35 (82%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
++ K+EK+K+ K+KKEE K++K++ K++KKK K +
Sbjct: 96 ERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 31.8 bits (73), Expect = 0.079
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKK 183
K++KKK+ KEKK ++K+ + + K++KKK K +
Sbjct: 98 NKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 27.2 bits (61), Expect = 2.9
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 156 KKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K + + K +KKK +KK+++K++K++ K++K K K
Sbjct: 92 KLEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKH 129
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 35.4 bits (82), Expect = 0.015
Identities = 16/62 (25%), Positives = 20/62 (32%)
Query: 132 KCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
V G + KKK + K K KKK K + KK +KK
Sbjct: 53 DQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNAL 112
Query: 192 KK 193
K
Sbjct: 113 DK 114
Score = 35.0 bits (81), Expect = 0.020
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
K K KK K + + KK +KK K +
Sbjct: 82 AAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVK 122
Score = 34.6 bits (80), Expect = 0.023
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK K K K KK K + KK +KK +K
Sbjct: 73 DIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKD 115
Score = 33.8 bits (78), Expect = 0.042
Identities = 13/77 (16%), Positives = 24/77 (31%)
Query: 117 KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKK 176
+T + + + K + S + + +KK K + K
Sbjct: 32 FITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAP 91
Query: 177 KKKKKKKKKKKKVKEKK 193
KKK K + K +K
Sbjct: 92 AKKKLKDELDSSKKAEK 108
Score = 33.8 bits (78), Expect = 0.044
Identities = 17/77 (22%), Positives = 23/77 (29%)
Query: 117 KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKK 176
K T + + + V K K K K KK K+E KK
Sbjct: 46 KKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKK 105
Query: 177 KKKKKKKKKKKKVKEKK 193
+KK K + K
Sbjct: 106 AEKKNALDKDDDLNYVK 122
Score = 32.7 bits (75), Expect = 0.11
Identities = 14/77 (18%), Positives = 24/77 (31%)
Query: 117 KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKK 176
K IK + + + + + + + K+K K K KK
Sbjct: 35 KEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKK 94
Query: 177 KKKKKKKKKKKKVKEKK 193
K K + KK K+
Sbjct: 95 KLKDELDSSKKAEKKNA 111
Score = 31.5 bits (72), Expect = 0.28
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+++ KK+ +K K K +G K++ K+ + KKK ++
Sbjct: 11 AAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQID 53
Score = 30.7 bits (70), Expect = 0.43
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K +KK+K + + KK +KK K VK+
Sbjct: 83 AKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDID 125
Score = 30.3 bits (69), Expect = 0.66
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K + E++ KKK ++ K K K K++ K+ E K
Sbjct: 3 TASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESK 45
Score = 30.0 bits (68), Expect = 0.70
Identities = 12/77 (15%), Positives = 22/77 (28%)
Query: 117 KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKK 176
K K+ + K + + + + KK K + K
Sbjct: 31 GFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKA 90
Query: 177 KKKKKKKKKKKKVKEKK 193
KKK K + K+ +
Sbjct: 91 PAKKKLKDELDSSKKAE 107
Score = 30.0 bits (68), Expect = 0.86
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 151 KKKKKKKKEKEKKVKK--KKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
K + ++E +KK+KK K + K K++ K+ + KK ++
Sbjct: 7 KAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQI 52
Score = 29.2 bits (66), Expect = 1.4
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KKK KK K K +E K+ + KKK ++ +V
Sbjct: 17 KKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIF 58
Score = 28.8 bits (65), Expect = 2.0
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K KKK K++ KK E K K K V +
Sbjct: 88 AKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQ 129
Score = 28.0 bits (63), Expect = 3.4
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
Query: 116 MKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKK 175
K +K + + + ++K + + S K ++ + VK + +
Sbjct: 16 AKKKLKKLAAKSK-SKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDI 74
Query: 176 KKKKKKKKKKKKKVKEKK 193
KKK K K K
Sbjct: 75 PKKKTKTAAKAAAAKAPA 92
Score = 27.7 bits (62), Expect = 4.7
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KKK K + + KK +KK K K + +
Sbjct: 93 KKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDD 134
Score = 27.3 bits (61), Expect = 6.4
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K + E+E K K KK K K K K++ K+ +KK
Sbjct: 5 STKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKK 47
Score = 27.3 bits (61), Expect = 6.5
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K +EE KKK KK K K K KE+
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEI 38
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 35.2 bits (81), Expect = 0.017
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
G+ K + +E + K K+E+ K+++ +KK+K++ + K K +K
Sbjct: 386 GEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQK 429
Score = 32.1 bits (73), Expect = 0.15
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ + K K+ K K+EE +KK+K++ + K+K++K + KK
Sbjct: 392 TDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 28.2 bits (63), Expect = 2.7
Identities = 15/44 (34%), Positives = 31/44 (70%)
Query: 141 DTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKK 184
+TD S + K K++K K++E + K+K++ + K+K++K ++KK
Sbjct: 391 ETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 34.6 bits (80), Expect = 0.018
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ ++K++EK K K K + K K ++K+K K++K+ K +
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLR 82
Score = 33.9 bits (78), Expect = 0.037
Identities = 13/42 (30%), Positives = 28/42 (66%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
++K+++K + K K KK K ++K+K K++K++K ++E
Sbjct: 43 EEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84
Score = 33.1 bits (76), Expect = 0.057
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++K+++K K K K+ K K ++K+K K++K++K +
Sbjct: 42 DEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84
Score = 32.3 bits (74), Expect = 0.092
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
K+++K K + K KK + ++K+K K++K++K + E
Sbjct: 45 KEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELE 85
Score = 31.2 bits (71), Expect = 0.25
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
E++++ +++K + K K KK K K ++K K K+
Sbjct: 40 EEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKR 74
Score = 30.4 bits (69), Expect = 0.45
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++E+ +K++E+ K K K KK K K + KEK
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKA 72
Score = 28.1 bits (63), Expect = 3.0
Identities = 11/31 (35%), Positives = 11/31 (35%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
EK K K K KKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGAND 222
>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of
myotilin, palladin, and myopalladin.
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in
myotilin, palladin, and myopalladin. Myotilin,
palladin, and myopalladin function as scaffolds that
regulate actin organization. Myotilin and myopalladin
are most abundant in skeletal and cardiac muscle;
palladin is ubiquitously expressed in the organs of
developing vertebrates and plays a key role in cellular
morphogenesis. The three family members each interact
with specific molecular partners: all three bind to
alpha-actinin; in addition, palladin also binds to
vasodilator-stimulated phosphoprotein (VASP) and ezrin,
myotilin binds to filamin and actin, and myopalladin
also binds to nebulin and cardiac ankyrin repeat protein
(CARP).
Length = 75
Score = 32.5 bits (74), Expect = 0.020
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 75 LECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCV 134
LEC A P +W K N E++ + + DN +I L I+ K+D G Y
Sbjct: 3 LECRVSAIPPPQIFWKKNN-EMLTYNTDRISLYQDNCGRI--CLLIQNANKEDAGWYTVS 59
Query: 135 SKNSLG 140
+ N G
Sbjct: 60 AVNEAG 65
>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2.
Ig1_Contactin-2: First Ig domain of the neural cell
adhesion molecule contactin-2-like. Contactins are
comprised of six Ig domains followed by four fibronectin
type III (FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-2 (TAG-1,
axonin-1) facilitates cell adhesion by homophilic
binding between molecules in apposed membranes. It may
play a part in the neuronal processes of neurite
outgrowth, axon guidance and fasciculation, and neuronal
migration. The first four Ig domains form the
intermolecular binding fragment, which arranges as a
compact U-shaped module by contacts between IG domains 1
and 4, and domains 2 and 3. The different contactins
show different expression patterns in the central
nervous system. During development and in adulthood,
contactin-2 is transiently expressed in subsets of
central and peripheral neurons. Contactin-2 is also
expressed in retinal amacrine cells in the developing
chick retina, corresponding to the period of formation
and maturation of AC processes.
Length = 94
Score = 33.0 bits (75), Expect = 0.023
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 66 GAMEGDQMTLECHSEAYPKSINYWTKENGEI-IAQGSKYEPILLDNAYKIHMKLTIKAVT 124
G+ E ++TL C + A P + W EI A S+Y + + L I
Sbjct: 16 GSPEE-KVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGN--------LVINNPQ 66
Query: 125 K-QDFGAYKCVSKNSLG 140
K +D G+Y+C++ N G
Sbjct: 67 KARDAGSYQCLAINRCG 83
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 34.4 bits (80), Expect = 0.024
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
+KE K K + KK+K++ K K K K ++
Sbjct: 63 KKELK-AWHKAQKKKEKQEAKAAKAKSKPRL 92
Score = 32.5 bits (75), Expect = 0.11
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 155 KKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+ KE+ K K+E K K +KKK+K++ K K K
Sbjct: 50 KEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKS 88
Score = 31.7 bits (73), Expect = 0.18
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ K+ K+E + + KKE K +KKK+K++ K + K
Sbjct: 46 NEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Score = 30.6 bits (70), Expect = 0.48
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 148 LYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKK 179
L KK+ K + +KK +K++ + K K K +
Sbjct: 60 LLDKKELKAWHKAQKKKEKQEAKAAKAKSKPR 91
Score = 30.2 bits (69), Expect = 0.67
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 149 YGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
Y + K++ K K + K K +KKK+K++ K K + +
Sbjct: 49 YKEMKEELKAALLDKKELKAWH--KAQKKKEKQEAKAAKAKSKPR 91
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 34.3 bits (78), Expect = 0.035
Identities = 16/58 (27%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 137 NSLGDTDGS-IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
NS TD L K KK++E +K K++ E+ +++++++K+K+K++++ +E++
Sbjct: 560 NSCARTDLYFTPLASSKLAKKREEAVEKAKREAEQKAREEREREKEKEKERERERERE 617
>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM).
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays
important roles in the development and regeneration of
the central nervous system, in synaptogenesis and neural
migration. NCAM mediates cell-cell and cell-substratum
recognition and adhesion via homophilic (NCAM-NCAM) and
heterophilic (NCAM-non-NCAM) interactions. NCAM is
expressed as three major isoforms having different
intracellular extensions. The extracellular portion of
NCAM has five N-terminal Ig-like domains and two
fibronectin type III domains. The double zipper adhesion
complex model for NCAM homophilic binding involves Ig1,
Ig2, and Ig3. By this model, Ig1 and Ig2 mediate
dimerization of NCAM molecules situated on the same cell
surface (cis interactions), and Ig3 domains mediate
interactions between NCAM molecules expressed on the
surface of opposing cells (trans interactions), through
binding to the Ig1 and Ig2 domains. The adhesive ability
of NCAM is modulated by the addition of polysialic acid
chains to the fifth Ig-like domain.
Length = 97
Score = 32.3 bits (73), Expect = 0.036
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
P + +++NQ +E +Q+TL C + P W I ++ + ++ ++
Sbjct: 3 PKITYVENQTAMELE-EQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHAR 61
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNSLG 140
LT+K + D G Y C + N++G
Sbjct: 62 VSSLTLKYIQYTDAGEYLCTASNTIG 87
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 33.8 bits (78), Expect = 0.037
Identities = 13/41 (31%), Positives = 28/41 (68%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+++ K+ E EK++ + +++G +KK KK KK K ++ + E+
Sbjct: 75 EEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEE 115
>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1.
Ig5_Contactin-1: fifth Ig domain of the neural cell
adhesion molecule contactin-1. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-1 is
differentially expressed in tumor tissues and may
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 73
Score = 31.5 bits (71), Expect = 0.047
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 16/80 (20%)
Query: 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHM----KLTIKAVTK 125
G ++ +EC +A PK W+K G++ LL N +I + L I +TK
Sbjct: 1 GGRVIIECKPKAAPKPKFSWSK--------GTE----LLVNNSRISIWDDGSLEILNITK 48
Query: 126 QDFGAYKCVSKNSLGDTDGS 145
D G+Y C ++N+ G + +
Sbjct: 49 LDEGSYTCFAENNRGKANST 68
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 33.0 bits (76), Expect = 0.049
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK+ KE E KKK +++KKKKKKK KKKK+K+
Sbjct: 157 KKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVA 199
Score = 32.7 bits (75), Expect = 0.064
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+ + +KK +EE KKKKKK KKKK KK K
Sbjct: 164 KEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMK 204
Score = 31.9 bits (73), Expect = 0.15
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKK 174
KKKKKKK K+KK+KK G K
Sbjct: 182 KKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 31.5 bits (72), Expect = 0.16
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+ + ++K+K ++E+ KKKKK KKKK KK V K
Sbjct: 164 KEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 29.2 bits (66), Expect = 1.00
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
+ KKK E++ KKKK++ KKKK KK K
Sbjct: 169 ARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 28.4 bits (64), Expect = 1.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
+ KKK ++ KKKK++ KKKK KK K
Sbjct: 168 AARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 27.7 bits (62), Expect = 3.2
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 148 LYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
L K ++ KKKE + K + + KK +++KKKKKKK K+KK
Sbjct: 149 LLKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKK 194
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 33.9 bits (78), Expect = 0.049
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ ++K+ KE+ K K K + K +K K KKK+KKKKK +K
Sbjct: 1143 EQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKS 1189
Score = 32.3 bits (74), Expect = 0.15
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
++ K K K K K++K K + K+KKKKK K KK V
Sbjct: 1155 EQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVG 1196
Score = 31.9 bits (73), Expect = 0.21
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+++ K K K K K +K + KKK+KKKKK K KK
Sbjct: 1154 KEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVG 1196
Score = 31.6 bits (72), Expect = 0.27
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 139 LGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
L D D + ++++ ++KE K+ + K + K K +K K KKK+KK K+
Sbjct: 1131 LEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSS 1185
Score = 31.6 bits (72), Expect = 0.28
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 135 SKNSLGDTDGSIKLY--GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
SK G+++G K KKK KK+ E KKK++ +KK +KKK K + K+ +
Sbjct: 1289 SKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQ 1348
Score = 30.8 bits (70), Expect = 0.53
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K K K + + K K++ KKKKK K KK K+
Sbjct: 1158 LKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKR 1200
Score = 29.2 bits (66), Expect = 1.6
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ K+++ + + K K K K KKK+KKKKK K K+
Sbjct: 1151 EIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKAS 1193
Score = 28.9 bits (65), Expect = 2.4
Identities = 16/79 (20%), Positives = 26/79 (32%)
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKK 174
K + G K S KKKKK EK+ KKK + K+
Sbjct: 1284 SPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQ 1343
Query: 175 KKKKKKKKKKKKKKVKEKK 193
+ + ++ + K+
Sbjct: 1344 ASASQSSRLLRRPRKKKSD 1362
Score = 26.9 bits (60), Expect = 9.7
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K +K K K+KEKK KK + KK K+ + ++
Sbjct: 1167 SKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLD 1210
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 33.7 bits (77), Expect = 0.052
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 141 DTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+D ++K K K K K K+ K E K+++K+K++ K++KKK KEK
Sbjct: 72 SSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKP 124
Score = 33.3 bits (76), Expect = 0.072
Identities = 17/43 (39%), Positives = 34/43 (79%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ K++KK+K++K K++ ++ K K++ K+K+ K+K+K KEKK
Sbjct: 111 EQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKK 153
Score = 33.3 bits (76), Expect = 0.073
Identities = 20/44 (45%), Positives = 33/44 (75%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+KKKKK+K KE+ +K +E K+K+ K+K+K+K+KKV+E +
Sbjct: 115 EEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPR 158
Score = 32.9 bits (75), Expect = 0.084
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+ K + KE++ +K++ + +KKKKK+K K++ K +K KE+
Sbjct: 94 PAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Score = 32.9 bits (75), Expect = 0.099
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
G K K K K K + +++K+K++ K++KKKKK K K+
Sbjct: 83 GGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKE 126
Score = 32.6 bits (74), Expect = 0.12
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKKKK+K ++E K +K KEE K+K+ K+K+K+K+KK + +
Sbjct: 117 KKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRD 159
Score = 32.6 bits (74), Expect = 0.13
Identities = 14/43 (32%), Positives = 31/43 (72%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK+K K++ K++K K++ +E + K+K+K+K+KK ++ ++
Sbjct: 120 KKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREE 162
Score = 32.2 bits (73), Expect = 0.17
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 141 DTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ +K+K++ KE++KK K+K +E K +K K++ K+K+ K KEK+
Sbjct: 97 EPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKE 149
Score = 31.8 bits (72), Expect = 0.21
Identities = 17/43 (39%), Positives = 32/43 (74%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+K++ K+++K+KK K K+E +K K++ K+K+ K+K KEK+
Sbjct: 109 EKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKE 151
Score = 31.8 bits (72), Expect = 0.22
Identities = 15/44 (34%), Positives = 31/44 (70%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K++KKKK+++ K + K + K++ K+K+ K+K+K+K K+ +
Sbjct: 112 QVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVE 155
Score = 31.8 bits (72), Expect = 0.23
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K KE + + K++E+ K++ K++KKKKK+K K+ + +
Sbjct: 89 AAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDR 131
Score = 31.8 bits (72), Expect = 0.23
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 142 TDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K + K++EKEK+ K++++ KK+K K++ K +K K++ KEK+
Sbjct: 90 AKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKR 141
Score = 31.4 bits (71), Expect = 0.31
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
G K K ++ K K+EE +K++ K++KKKKK+K K + K
Sbjct: 87 GPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKD 130
Score = 29.9 bits (67), Expect = 0.85
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+K+KK ++ ++++ +KK+E + K + KK KKK K KE
Sbjct: 149 EKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEP 190
Score = 29.5 bits (66), Expect = 1.1
Identities = 14/43 (32%), Positives = 31/43 (72%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K +K K++ KEK+ K+KE+ K+KK ++ + ++++KK+ + +
Sbjct: 129 KDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRA 171
Score = 29.1 bits (65), Expect = 1.5
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+K+KK +E + ++KK E + K + KK KKK K++
Sbjct: 147 EKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEP 190
Score = 28.7 bits (64), Expect = 2.0
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K ++ + +E+EKK ++ + + + KK KKK KKK+ +E+K
Sbjct: 153 KVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEK 195
Score = 27.5 bits (61), Expect = 4.5
Identities = 15/43 (34%), Positives = 30/43 (69%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+K+ KEKEK+ +KK EE + ++++KK+++ + K + K+
Sbjct: 137 AKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPP 179
Score = 27.5 bits (61), Expect = 5.7
Identities = 14/42 (33%), Positives = 31/42 (73%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+K K++ KEK +K+KE+ KK ++ + ++++KK+++V+ K
Sbjct: 131 RKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAK 172
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 32.8 bits (75), Expect = 0.059
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+K+ K +K+K K KK K + +KK + + + V EKK
Sbjct: 108 EEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKK 151
Score = 30.5 bits (69), Expect = 0.39
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+EKE KV KK++ K KK KK + +KKV E +
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEAR 143
Score = 28.2 bits (63), Expect = 1.9
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KK K + +K KK E +KK + + + +KK +
Sbjct: 117 KKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAA 156
Score = 27.0 bits (60), Expect = 4.9
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K+ KK K K +K K + E K + + + +KK +
Sbjct: 113 KVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAV 158
>gnl|CDD|235516 PRK05582, PRK05582, DNA topoisomerase I; Validated.
Length = 650
Score = 33.3 bits (77), Expect = 0.063
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
YG K KK + + E+ VK+ E KKK K K KKK++K+
Sbjct: 207 SFYGYKGKKIELKNEEDVKEILAELKKKDFKVSKVKKKERKR 248
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 33.4 bits (77), Expect = 0.067
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 149 YGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
Y +K+KK+K+ K + K K +K K +
Sbjct: 764 YTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDL 803
Score = 30.7 bits (70), Expect = 0.50
Identities = 5/44 (11%), Positives = 11/44 (25%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ + K K +K K+ G + +
Sbjct: 775 KSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGV 818
Score = 29.6 bits (67), Expect = 1.1
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+K+KKEKE K + + +G K +K K +
Sbjct: 765 TEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLT 804
Score = 29.2 bits (66), Expect = 1.4
Identities = 7/43 (16%), Positives = 8/43 (18%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K EK E K V +
Sbjct: 780 ALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVSADR 822
Score = 28.0 bits (63), Expect = 3.9
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+KK+K+ K + + +K + +K K +
Sbjct: 768 QKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDA 810
Score = 27.3 bits (61), Expect = 5.7
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
EK+ K+K+ + + + K K +K K +
Sbjct: 763 NYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVE 798
Score = 27.3 bits (61), Expect = 6.9
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 152 KKKKKKKEKEKKVKKKKE-EGKKKKKKKKKKKKKKKKKVKEKK 193
+K+KK+++ K + + G K +K K + +
Sbjct: 765 TEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAAD 807
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 32.7 bits (75), Expect = 0.069
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK+ K K KE KKKK++ K K + KKK +
Sbjct: 87 KKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISW 129
Score = 32.0 bits (73), Expect = 0.13
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
KKK+ K K ++ KKKK++ K K + KKK + W
Sbjct: 86 KKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISW 129
Score = 30.8 bits (70), Expect = 0.34
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
G+K+ ++++ +KK + K + K+ KKKKKK K K
Sbjct: 74 GEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAA 117
Score = 29.3 bits (66), Expect = 1.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ KKKK+ K K K+ ++ KKK K K + K+K
Sbjct: 82 ERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKS 124
Score = 28.5 bits (64), Expect = 1.9
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
E EK++++++ KKK+ K K K+ KKK K+
Sbjct: 73 EGEKELQREERLKKKKRVKTKAYKEPTKKKKKKD 106
Score = 27.3 bits (61), Expect = 4.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+ +++++ K+KK K K + KKKKKK K
Sbjct: 76 KELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAP 118
Score = 27.3 bits (61), Expect = 5.1
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
+ ++ ++ +E + ++KK + K +K+K+K KEK+
Sbjct: 147 VQNKEATHERLKEREIRRKKIQAKARKRKEKKKEKEL 183
Score = 27.0 bits (60), Expect = 5.7
Identities = 12/45 (26%), Positives = 17/45 (37%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
K Y + KKKKK+ K K + KKK ++
Sbjct: 93 KAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDSP 137
Score = 27.0 bits (60), Expect = 6.9
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
E+E + + ++EE KKKK+ K K K+ K K+KK
Sbjct: 71 EEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKK 105
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 33.1 bits (76), Expect = 0.072
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 142 TDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
G+I+ K +K KKK KEK+ +K +K + KK KK K+ +++V
Sbjct: 60 DTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRV 107
>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of
peroxidasin. Ig3_Peroxidasin: the third immunoglobulin
(Ig)-like domain in peroxidasin. Peroxidasin has a
peroxidase domain and interacting extracellular motifs
containing four Ig-like domains. It has been suggested
that peroxidasin is secreted and has functions related
to the stabilization of the extracellular matrix. It may
play a part in various other important processes such as
removal and destruction of cells which have undergone
programmed cell death, and protection of the organism
against non-self.
Length = 74
Score = 31.1 bits (70), Expect = 0.072
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 69 EGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI--HMKLTIKAVTKQ 126
EG + C ++ YP+ + WTK + +D + + L I V
Sbjct: 1 EGQTVDFLCEAQGYPQPVIAWTKGGS----------QLSVDRRHLVLSSGTLRISRVALH 50
Query: 127 DFGAYKCVSKNSLGDTDGSIKL 148
D G Y+C + N +G +L
Sbjct: 51 DQGQYECQAVNIVGSQRTVAQL 72
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 33.3 bits (76), Expect = 0.075
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 151 KKKKKKKKEK-EKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK++K KEK KK+K ++E K K + ++ K EKK
Sbjct: 22 KKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKK 65
Score = 32.9 bits (75), Expect = 0.088
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+KKKK++K KEK++KK K K+ K K + ++ V +K
Sbjct: 20 RKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKS 62
Score = 32.9 bits (75), Expect = 0.092
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+KK E+E + KKKKEE K+K+ KK K +K+ K K +
Sbjct: 9 EKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQ 48
Score = 31.8 bits (72), Expect = 0.23
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 158 KEKEKKVKKKKE-EGKKKKKKKKKKKKKKKKKVKEK 192
E EKK+ ++E E KKKK++K K+K+ KK K +K
Sbjct: 6 SEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQK 41
Score = 29.1 bits (65), Expect = 1.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
KK K +KE K K + ++ KK +KK +K+ E
Sbjct: 34 KKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVE 72
Score = 27.9 bits (62), Expect = 3.8
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K ++K K+K+ K+ K +K+ + K + ++ KK K+ +
Sbjct: 21 KKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSR 67
Score = 27.2 bits (60), Expect = 6.5
Identities = 11/37 (29%), Positives = 25/37 (67%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
++ ++KK+KE+K K+K+ + K +K+ K K + ++
Sbjct: 16 EELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQA 52
>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin.
Ig3_Contactin_like: Third Ig domain of contactins.
Contactins are neural cell adhesion molecules and are
comprised of six Ig domains followed by four fibronectin
type III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5
is expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack
of contactin-5 (NB-2) results in an impairment of
neuronal act ivity in the rat auditory system.
Contactin-5 is highly expressed in the adult human brain
in the occipital lobe and in the amygdala. Contactin-1
is differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 88
Score = 31.3 bits (71), Expect = 0.079
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQG--SKYEPILLDNAY 112
P +I + + A++G +TLEC + P W K +G + + S +
Sbjct: 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAV------ 54
Query: 113 KIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
L I + +D G Y+C ++N G
Sbjct: 55 -----LKIPNIQFEDEGTYECEAENIKG 77
>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain
of palladin. Ig_Palladin_C: C-terminal immunoglobulin
(Ig)-like domain of palladin. Palladin belongs to the
palladin-myotilin-myopalladin family. Proteins belonging
to this family contain multiple Ig-like domains and
function as scaffolds, modulating actin cytoskeleton.
Palladin binds to alpha-actinin ezrin,
vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP,
mDia interacting protein), and Src. Palladin also binds
F-actin directly, via its Ig3 domain. Palladin is
expressed as several alternatively spliced isoforms,
having various combinations of Ig-like domains, in a
cell-type-specific manner. It has been suggested that
palladin's different Ig-like domains may be specialized
for distinct functions.
Length = 75
Score = 30.8 bits (69), Expect = 0.081
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 75 LECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCV 134
LEC P +W KEN E + + + DN ++ L I+ TK+D G Y
Sbjct: 3 LECRVSGVPHPQIFWKKEN-ESLTHNTDRVSMHQDNCG--YICLLIQGATKEDAGWYTVS 59
Query: 135 SKNSLGDTDGSIKL 148
+KN G + +L
Sbjct: 60 AKNEAGIVSCTARL 73
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 32.5 bits (74), Expect = 0.085
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKK 186
KK + K++ + +E K+KKKKK KKKK K
Sbjct: 68 RKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 27.9 bits (62), Expect = 3.5
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
+ ++KK + KK + ++ K+KKKKK KKKK K
Sbjct: 64 RQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 32.1 bits (74), Expect = 0.087
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
K+KKK+K+KK + + E KKKK +++K+ +K V
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAV 117
Score = 29.8 bits (68), Expect = 0.48
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
K+KKKK+K+KK + EE KKK +++K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 27.1 bits (61), Expect = 4.0
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K + K+KK++ KKKK+ + ++KKKK V E++
Sbjct: 75 KLNDAYFKRKKKKKKKKKEGEFFEEKKKKYVVSEER 110
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 32.5 bits (74), Expect = 0.089
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K+ KK KK + KV K + K KKK + K + +
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPR 186
Score = 31.8 bits (72), Expect = 0.17
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KE K KK + K K K KK KKK
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSV 178
Score = 28.3 bits (63), Expect = 2.3
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ KK KK + K K KK KKK + K
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVK 179
Score = 27.9 bits (62), Expect = 3.1
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ KK KK + K K K + KKK + K K
Sbjct: 145 KEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSK 188
Score = 27.9 bits (62), Expect = 3.2
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KK + K K K KK K++G + K + K K
Sbjct: 151 KKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 27.2 bits (60), Expect = 6.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
E ++ K KK + K K K KK KKK V +
Sbjct: 143 EAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRS 177
>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down
Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the
seventh immunoglobulin (Ig)-like domain of Down Syndrome
Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion
molecule expressed largely in the developing nervous
system. The gene encoding DSCAM is located at human
chromosome 21q22, the locus associated with the mental
retardation phenotype of Down Syndrome. DSCAM is
predicted to be the largest member of the IG
superfamily. It has been demonstrated that DSCAM can
mediate cation-independent homophilic intercellular
adhesion.
Length = 79
Score = 30.7 bits (69), Expect = 0.11
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 74 TLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI--HMKLTIKAVTKQDFGAY 131
TL C +E YP W G Q L ++ + L IK V ++D G Y
Sbjct: 2 TLNCSAEGYPPPTIVWKHSKGRGHPQ--HTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYY 59
Query: 132 KCVSKNSLGDTDGSIKLY 149
C N +G D S +
Sbjct: 60 LCKVSNDVG-ADASKSMV 76
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 32.5 bits (74), Expect = 0.12
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 148 LYGKKKKKKKKEKEKKVKKKKEE-----GKKKKKKKKKKKKKKKKKVKE 191
LYG KKKK K + G +KKKKKKK K+KKKKK +E
Sbjct: 654 LYGYDAPKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKKKKKNRE 702
Score = 29.1 bits (65), Expect = 1.9
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKK 173
+KKKKKKK KEKK KK +E K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 27.5 bits (61), Expect = 5.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKK 174
G +KKKKKK+ ++K KKK E K+
Sbjct: 682 GSRKKKKKKKSKEKKKKKNREASKQ 706
>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in
neogenin and similar proteins. Ig1_Neogenin: first
immunoglobulin (Ig)-like domain in neogenin and related
proteins. Neogenin is a cell surface protein which is
expressed in the developing nervous system of vertebrate
embryos in the growing nerve cells. It is also expressed
in other embryonic tissues, and may play a general role
in developmental processes such as cell migration,
cell-cell recognition, and tissue growth regulation.
Included in this group is the tumor suppressor protein
DCC, which is deleted in colorectal carcinoma . DCC and
neogenin each have four Ig-like domains followed by six
fibronectin type III domains, a transmembrane domain,
and an intracellular domain.
Length = 95
Score = 30.9 bits (70), Expect = 0.12
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
Query: 67 AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVT-- 124
A+ G + L C +E P W K++G ++ S L N L I +V
Sbjct: 11 AVRGGPVVLNCSAEGEPPPKIEW-KKDGVLLNLVSDERRQQLPNG-----SLLITSVVHS 64
Query: 125 ---KQDFGAYKCVSKNSLGDTDGSI 146
K D G Y+CV++N D+ GSI
Sbjct: 65 KHNKPDEGFYQCVAQN---DSLGSI 86
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 32.7 bits (75), Expect = 0.13
Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ KK+ K+ E+K+++ + E +KK+++ +K K K K +K
Sbjct: 98 EELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKL 140
Score = 30.7 bits (70), Expect = 0.42
Identities = 12/44 (27%), Positives = 30/44 (68%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
+ + ++ K++ KK+++K E+ + + +KK+++ +K K K +K W
Sbjct: 94 EAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAW 137
Score = 30.0 bits (68), Expect = 0.91
Identities = 10/39 (25%), Positives = 26/39 (66%)
Query: 155 KKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ E E ++++ K+E KK ++K ++ + + +KK +E +
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELE 126
Score = 29.6 bits (67), Expect = 1.2
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK ++K ++ E +++KK+EE +K K K K KK K +
Sbjct: 105 KKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSN 147
Score = 28.8 bits (65), Expect = 2.1
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+K+KK EK + ++E K+ + + K +K+ K+ K+
Sbjct: 411 DAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQ 451
Score = 28.8 bits (65), Expect = 2.1
Identities = 10/50 (20%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 145 SIKLYGKKKKKKKKE-KEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ G++ + + + +E K + KK E K ++ + + +KK+++ + + K
Sbjct: 82 GVFTLGEENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNK 131
Score = 28.1 bits (63), Expect = 3.5
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+L + KK ++K ++ + + +K+E + +K K K K KK K+
Sbjct: 99 ELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYD 145
Score = 26.9 bits (60), Expect = 8.2
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKK 184
K+ + + +KKE+E + K K K KK KK
Sbjct: 110 KIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSN 147
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 32.5 bits (75), Expect = 0.13
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 106 ILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVK 165
I D+ K H+ IK K FG K + D S + K + +K++E EK K
Sbjct: 134 IERDHLKKKHLPKLIKQYEKFGFGILKIDF-----EIDDSKEELEKFEAQKEEEDEKLAK 188
Query: 166 KKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+ E KK + +KKK+ K K
Sbjct: 189 EALEAMKKLEAEKKKQSKNFDPKEGPV 215
Score = 28.3 bits (64), Expect = 3.1
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ +K + +KE++ +K +E + KK + +KKK+ K K+
Sbjct: 170 EELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKE 212
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 32.6 bits (74), Expect = 0.14
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K + K+K K+ +E K + + + ++ K +E+K
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEK 833
Score = 26.8 bits (59), Expect = 9.1
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 135 SKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
G D IK + + E E+ K++EE KKKK KV
Sbjct: 800 KPKEKGPNDKEIK---IESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYKV 851
>gnl|CDD|234533 TIGR04285, nucleoid_noc, nucleoid occlusion protein. This model
describes nucleoid occlusion protein, a close homolog to
ParB chromosome partitioning proteins including Spo0J in
Bacillus subtilis. Its gene often is located near the
gene for the Spo0J ortholog. This protein bind a
specific DNA sequence and blocks cytokinesis from
happening until chromosome segregation is complete.
Length = 255
Score = 32.1 bits (74), Expect = 0.14
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKK 183
K+ E+ +KK E+ +K KKKKK++K
Sbjct: 185 KQTEELIKKLLEKPEKPKKKKKRRKG 210
Score = 27.9 bits (63), Expect = 3.2
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 155 KKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
+ EK VK+ +E KK +K +K KKKKK++
Sbjct: 175 NEIIEKGLNVKQTEELIKKLLEKPEKPKKKKKRRKG 210
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 32.5 bits (74), Expect = 0.14
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K ++ +EK ++ + E G KK ++ KK KK +K
Sbjct: 1174 KAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKA 1214
Score = 29.8 bits (67), Expect = 1.1
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
K+ K +E + K ++ + + KK ++ KK KK
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKT 1210
Score = 29.1 bits (65), Expect = 1.6
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
K ++ + + KK + KK KK KK + + E
Sbjct: 1181 KLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTE 1221
Score = 29.1 bits (65), Expect = 1.7
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
K ++ ++K + + + KK ++ KK KK K
Sbjct: 1174 KAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKK 1213
Score = 27.9 bits (62), Expect = 4.5
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKK 185
+K ++ E KK KK KK KK
Sbjct: 1180 EKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKA 1214
>gnl|CDD|240292 PTZ00148, PTZ00148, 40S ribosomal protein S8; Provisional.
Length = 205
Score = 31.9 bits (73), Expect = 0.15
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 147 KLYGK---KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
K YG KKKK KKE+E K KKK E K + +KK K K + E
Sbjct: 115 KHYGIDLGKKKKYKKEEENKKAKKKSESLVAKLEVRKKNHKIDKALLE 162
Score = 26.9 bits (60), Expect = 5.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 146 IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKK 182
I L KKK KK++E +K KK + K + +KK K
Sbjct: 119 IDLGKKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 32.1 bits (74), Expect = 0.15
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+L +K K ++ + ++ K +KK+KKKKK+K+K +E K
Sbjct: 592 ELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELK 638
Score = 29.8 bits (68), Expect = 0.97
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 151 KKKKKKKKEKEKKVKKKK-EEGKKKKKKKKKKKKKKKKKVKE 191
K K E +K+ + +KK+KKKKK+K+K++++K
Sbjct: 598 KGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639
Score = 29.4 bits (67), Expect = 1.2
Identities = 10/42 (23%), Positives = 29/42 (69%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
++K ++ + K+ +K KEE ++KK+K ++++ K ++ +++
Sbjct: 533 EQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574
Score = 29.0 bits (66), Expect = 1.6
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K + E K++ K E KK+KKKKK+K+K+++ KV ++
Sbjct: 605 KAHELIEARKRLNKANE--KKEKKKKKQKEKQEELKVGDE 642
Score = 27.5 bits (62), Expect = 6.0
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
K+ ++ +K VK + +K+ K +KK+KKKK +++K
Sbjct: 591 KELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQ 634
Score = 26.7 bits (60), Expect = 9.9
Identities = 9/43 (20%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKK-KKKVKEKK 193
K+ ++ ++++++KKE+ ++++ K ++ +K+ ++ +KE K
Sbjct: 541 ALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAK 583
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 32.2 bits (73), Expect = 0.16
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK K + KK KK ++ KK K KK KK K K
Sbjct: 238 AKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKA 281
Score = 30.6 bits (69), Expect = 0.41
Identities = 16/40 (40%), Positives = 18/40 (45%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
KK K +K K + KK KK KK KK K VK
Sbjct: 229 KKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVK 268
Score = 30.6 bits (69), Expect = 0.46
Identities = 17/47 (36%), Positives = 19/47 (40%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K KK KK +K K K+ KK K K K K K K
Sbjct: 247 KAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKA 293
Score = 30.2 bits (68), Expect = 0.53
Identities = 22/73 (30%), Positives = 25/73 (34%)
Query: 121 KAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKK 180
K K A K K + + K K KK K K K + K K K KKK
Sbjct: 239 KKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKK 298
Query: 181 KKKKKKKKVKEKK 193
KK K K
Sbjct: 299 AGKKAAAGSKAKA 311
Score = 30.2 bits (68), Expect = 0.56
Identities = 21/64 (32%), Positives = 26/64 (40%)
Query: 130 AYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
A K VSK T S K K K K+ +K KK ++ K KK KK K K
Sbjct: 222 AAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKA 281
Query: 190 KEKK 193
+
Sbjct: 282 AKGA 285
Score = 29.9 bits (67), Expect = 0.77
Identities = 16/41 (39%), Positives = 17/41 (41%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
K K KK +KK K KK K K KK KK K
Sbjct: 217 AKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAK 257
Score = 29.5 bits (66), Expect = 0.99
Identities = 16/43 (37%), Positives = 17/43 (39%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK K K KKV KKK KK K K K +K
Sbjct: 213 KKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKT 255
Score = 29.5 bits (66), Expect = 1.0
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK K K K K++ K KK K K K+ K
Sbjct: 211 GAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAK 253
Score = 29.1 bits (65), Expect = 1.3
Identities = 15/44 (34%), Positives = 17/44 (38%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
G KK K + K KK+ K KK K K K KK
Sbjct: 211 GAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKK 254
Score = 28.7 bits (64), Expect = 2.2
Identities = 18/50 (36%), Positives = 19/50 (38%)
Query: 144 GSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K KK KKK K KK + K KK KK KK K K
Sbjct: 217 AKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKA 266
Score = 28.3 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KK K + KK + K KK KKK K +K
Sbjct: 200 KKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKK 240
Score = 26.8 bits (59), Expect = 7.1
Identities = 16/44 (36%), Positives = 16/44 (36%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK K K KK K KK KKK K V KK
Sbjct: 197 ANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKK 240
Score = 26.8 bits (59), Expect = 8.1
Identities = 14/47 (29%), Positives = 15/47 (31%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K K K+ K K K KKK K KK K
Sbjct: 200 KKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAA 246
>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5.
Ig1_Contactin-5: First Ig domain of the neural cell
adhesion molecule contactin-5. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains, anchored to the membrane by
glycosylphosphatidylinositol. The different contactins
show different expression patterns in the central
nervous system. In rats, a lack of contactin-5 (NB-2)
results in an impairment of the neuronal activity in the
auditory system. Contactin-5 is expressed specifically
in the postnatal nervous system, peaking at about 3
weeks postnatal. Contactin-5 is highly expressed in the
adult human brain in the occipital lobe and in the
amygdala; lower levels of expression have been detected
in the corpus callosum, caudate nucleus, and spinal
cord.
Length = 94
Score = 30.3 bits (68), Expect = 0.17
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 69 EGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDF 128
+ ++ L C + P W + NG I S Y L+D I +K D
Sbjct: 18 DEKKVILNCEARGNPVPTYRWLR-NGTEIDTESDYRYSLIDGNLIISNPSEVK-----DS 71
Query: 129 GAYKCVSKNSLG 140
G Y+C++ NS+G
Sbjct: 72 GRYQCLATNSIG 83
>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin.
Ig1_Contactin: First Ig domain of contactins. Contactins
are neural cell adhesion molecules and are comprised of
six Ig domains followed by four fibronectin type
III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5
is expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack
of contactin-5 (NB-2) results in an impairment of
neuronal activity in the rat auditory system.
Contactin-5 is highly expressed in the adult human brain
in the occipital lobe and in the amygdala. Contactin-1
is differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 91
Score = 30.5 bits (69), Expect = 0.17
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 72 QMTLECHSEAYPKSINYWTKENGEI-IAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGA 130
+++L C + P W EI S+Y L+ I +D G
Sbjct: 21 KVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYS--LVGGNLVIS-----NPSKAKDAGR 73
Query: 131 YKCVSKNSLG 140
Y+C++ N +G
Sbjct: 74 YQCLASNIVG 83
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 32.1 bits (74), Expect = 0.17
Identities = 9/42 (21%), Positives = 28/42 (66%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK+ E ++++ K + E +K+ ++++ + +K +K++ +K+
Sbjct: 54 IKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKE 95
Score = 30.1 bits (69), Expect = 0.76
Identities = 12/46 (26%), Positives = 34/46 (73%), Gaps = 3/46 (6%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKK---KKKKKKKKKKKKVKEKK 193
+K +K+ +KE+ + +K E +K+++ KK+K+ ++K++++++K+
Sbjct: 85 QKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKE 130
Score = 29.4 bits (67), Expect = 1.2
Identities = 8/38 (21%), Positives = 32/38 (84%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
+K++++ ++KEK++++K++E +KK+++ ++ +++ ++
Sbjct: 106 EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
Score = 29.0 bits (66), Expect = 1.8
Identities = 9/41 (21%), Positives = 33/41 (80%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+K + +++E++++KK++E ++K+++ +KK+++ ++ ++E
Sbjct: 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEE 139
Score = 29.0 bits (66), Expect = 1.9
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 148 LYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKK-KKKVKEKK 193
+ K + K KE E++ K+ EE KK+ + KK+ + K+++ + +
Sbjct: 24 VRKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLR 70
Score = 28.2 bits (64), Expect = 3.3
Identities = 10/46 (21%), Positives = 28/46 (60%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K+ K K+ ++E ++ +++ K+E + KK+ + K++ K++ +
Sbjct: 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNE 72
Score = 27.4 bits (62), Expect = 4.9
Identities = 10/46 (21%), Positives = 34/46 (73%), Gaps = 3/46 (6%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKK---KKKKKKKKKKKKKVKEKK 193
++++ + ++ EK++ +K+E +K +K++++ +KK+K++++K+
Sbjct: 78 RERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQ 123
Score = 27.0 bits (61), Expect = 6.3
Identities = 8/40 (20%), Positives = 26/40 (65%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KK+ + K++ + + KEE K + + +K+ ++++ ++++
Sbjct: 48 KKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKL 87
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 32.3 bits (73), Expect = 0.18
Identities = 20/41 (48%), Positives = 20/41 (48%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KKK KK KK KK KK KKK KK KKV K
Sbjct: 993 KKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARK 1033
Score = 30.0 bits (67), Expect = 0.86
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ +K + KK + KKK KK KK KK KK
Sbjct: 972 EAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKK 1014
Score = 29.2 bits (65), Expect = 1.7
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KK KK KK KK KKK KK KK +K +K
Sbjct: 998 KKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKK 1038
Score = 28.0 bits (62), Expect = 4.0
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
KK KK KK KK+ KK KK +K KK K+
Sbjct: 1003 KKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKK 1042
Score = 28.0 bits (62), Expect = 4.2
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ KK+ KK KK KK KK KKK KK KK
Sbjct: 988 TRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKK 1029
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region covers
both the Brf homology II and III regions. This region is
involved in binding TATA binding protein.
Length = 95
Score = 30.3 bits (69), Expect = 0.18
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
++++EK++K+K +EG KKKKK+K KKK+
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEA 63
Score = 29.5 bits (67), Expect = 0.34
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 155 KKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
++++EKE K K + KKKKK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEA 63
Score = 27.2 bits (61), Expect = 2.0
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+E+E+K K+K + KKKKK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 26.4 bits (59), Expect = 4.2
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
+++++KE ++K + GKKKKK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
>gnl|CDD|214651 smart00407, IGc1, Immunoglobulin C-Type.
Length = 75
Score = 30.0 bits (68), Expect = 0.19
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 74 TLECHSEA-YPKSIN-YWTKENGEIIAQGSKYEPILL--DNAYKIHMKLTIKAVTKQDFG 129
TL C YP I W + NG+ + +G L D Y + LT+ A T +
Sbjct: 3 TLVCLVSGFYPPDITVTWLR-NGQEVTEGVSTTDPLKNSDGTYFLSSYLTVPASTWESGD 61
Query: 130 AYKC 133
Y C
Sbjct: 62 VYTC 65
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 32.0 bits (72), Expect = 0.20
Identities = 9/41 (21%), Positives = 28/41 (68%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
K++ K ++EKE+ ++ + ++ KK+K+++++ +K + +
Sbjct: 1023 KERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHD 1063
Score = 30.5 bits (68), Expect = 0.71
Identities = 10/43 (23%), Positives = 26/43 (60%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ + ++ KE+++ KK++E +++ +K K+ K + KK
Sbjct: 1033 ERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKK 1075
Score = 29.3 bits (65), Expect = 1.7
Identities = 13/43 (30%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 151 KKKKKKKKEKEKKVKKKKEE--GKKKKKKKKKKKKKKKKKVKE 191
+ K +++KE+ + +++ KEE GKK+K+++++ +K KE
Sbjct: 1025 RIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKE 1067
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 30.7 bits (70), Expect = 0.21
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 136 KNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKK-------KKKKKKK 188
+ D DG + + +K K +E K KE+ KKKKKKK+ + ++KKK++
Sbjct: 44 ARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEE 103
Query: 189 VKE 191
+ E
Sbjct: 104 LAE 106
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain. This
presumed domain is found at the N-terminus of Ribosomal
L30 proteins and has been termed RL30NT or NUC018.
Length = 71
Score = 29.5 bits (67), Expect = 0.22
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
KK+K+ +K + K+ KK+ + +KKK+K K+ +K VKE
Sbjct: 4 KKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKE 44
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56
family). Protein phosphatase 2A (PP2A) is a major
intracellular protein phosphatase that regulates
multiple aspects of cell growth and metabolism. The
ability of this widely distributed heterotrimeric enzyme
to act on a diverse array of substrates is largely
controlled by the nature of its regulatory B subunit.
There are multiple families of B subunits (See also
pfam01240), this family is called the B56 family.
Length = 405
Score = 31.5 bits (72), Expect = 0.22
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 13/96 (13%)
Query: 84 KSINYWTKENGE-IIAQGSKYE-PILLDNAYKI---HMKLTIKAVTKQDFGAYKCVSKNS 138
+++ W E +I+ SK PIL Y+ H +++ +
Sbjct: 312 RALKLWNNEYFVNLISDNSKLILPILFPALYRNAKNHWNQSVRNLA--------LNVLKL 363
Query: 139 LGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKK 174
L + D + K K+K+ KEKK +KK+++ +
Sbjct: 364 LMEIDPDLFDECGNKYKEKEAKEKKKEKKRKKTWAR 399
>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain
of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin
(Ig)-like domain of myotilin. Mytolin belongs to the
palladin-myotilin-myopalladin family. Proteins belonging
to the latter family contain multiple Ig-like domains
and function as scaffolds, modulating actin
cytoskeleton. Myotilin is most abundant in skeletal and
cardiac muscle, and is involved in maintaining sarcomere
integrity. It binds to alpha-actinin, filamin and actin.
Mutations in myotilin lead to muscle disorders.
Length = 75
Score = 29.5 bits (66), Expect = 0.22
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 75 LECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCV 134
LEC A P +W K N E++ + + DN+ ++ L IK V K+D G Y
Sbjct: 3 LECQISAIPPPKIFW-KRNNEMVQYNTDRISLYQDNSGRV--TLLIKNVNKKDAGWYTVS 59
Query: 135 SKNSLG 140
+ N G
Sbjct: 60 AVNEAG 65
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 31.6 bits (72), Expect = 0.22
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 136 KNSLGDTDGSIKL--YGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
KN L + ++L KK +K ++K K + K ++ +KK KK + KV
Sbjct: 316 KNPLKNRRVRLRLNPAAKKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVA 372
Score = 27.3 bits (61), Expect = 6.2
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KK ++ V +++ K +K K ++ +KK K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARL 368
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 32.0 bits (73), Expect = 0.23
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+ E K+ EE K KKKKKK+KKK+++ K +EK
Sbjct: 731 KDAEFKISDSVEE-KTKKKKKKEKKKEEEYKREEKA 765
Score = 30.5 bits (69), Expect = 0.56
Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 25/114 (21%)
Query: 104 EPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSI----KLYGKKKKKKKKE 159
E +LL N YKI + + + + V+K G I K + + + ++E
Sbjct: 1468 EFVLLYNTYKIKPWIIPIKLLLLNLNGNENVNKKINQKKKGFIPSNEKKSIEIENRNQEE 1527
Query: 160 KEK---------------------KVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KE +K EE + KK+K KK+ K E
Sbjct: 1528 KEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSNTEA 1581
Score = 29.3 bits (66), Expect = 1.5
Identities = 11/38 (28%), Positives = 26/38 (68%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
K + K + +K K++ KK+KKK+++ K+++K +++
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIE 768
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 31.7 bits (73), Expect = 0.23
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
+ K+ K + + +++ ++KKKKK+K +K ++V
Sbjct: 137 AARGGKRGKGGKGRRRRRGRRRRRKKKKKQKPTEKIPREVV 177
>gnl|CDD|143266 cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-like domain of
fibroblast growth factor receptor 2 (FGFR2).
Ig3_FGFR-2-like; domain similar to the third
immunoglobulin (Ig)-like domain of human fibroblast
growth factor receptor 2 (FGFR2). Fibroblast growth
factors (FGFs) participate in morphogenesis,
development, angiogenesis, and wound healing. These
FGF-stimulated processes are mediated by four FGFR
tyrosine kinases (FGRF1-4). FGFRs are comprised of an
extracellular portion consisting of three Ig-like
domains, a transmembrane helix, and a cytoplasmic
portion having protein tyrosine kinase activity. The
highly conserved Ig-like domains 2 and 3, and the linker
region between D2 and D3 define a general binding site
for FGFs. FGFR2 is required for male sex determination.
Length = 90
Score = 29.9 bits (67), Expect = 0.25
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 70 GDQMTLEC--HSEAYP--KSINYWTKENGEIIAQGSKYEPIL----LDNAYKIHMKLTIK 121
G + C +S+A P + + + K + G Y +L ++ K L ++
Sbjct: 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLR 60
Query: 122 AVTKQDFGAYKCVSKNSLG 140
VT +D G Y C++ NS+G
Sbjct: 61 NVTFEDAGEYTCLAGNSIG 79
>gnl|CDD|203462 pfam06476, DUF1090, Protein of unknown function (DUF1090). This
family consists of several bacterial proteins of unknown
function and is known as YqjC in E. coli.
Length = 115
Score = 30.3 bits (69), Expect = 0.25
Identities = 13/44 (29%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKK-KKKKKKVKEKK 193
+++ K +EKE++V ++++E K+ + K K +KK++K+ E +
Sbjct: 66 AERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQ 109
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 31.5 bits (72), Expect = 0.26
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 145 SIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
S Y ++KKK KK+ EK+ + + KK+K+ + +K++
Sbjct: 78 STTTYFREKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 27.6 bits (62), Expect = 5.1
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
++KKK K+ +K + KK+K+ + +K++ V
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRHV 121
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 30.7 bits (70), Expect = 0.26
Identities = 15/54 (27%), Positives = 35/54 (64%), Gaps = 11/54 (20%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEG-----------KKKKKKKKKKKKKKKKKVKEK 192
KK+K++++E+E +V++ EE K K++K+++ ++K+K+ +KE+
Sbjct: 97 DKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQ 150
>gnl|CDD|211392 cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal ribosomal protein
S8e and similar proteins. This family contains the
eukaryotic/archaeal ribosomal protein S8, a component of
the small ribosomal subunits, as well as the NSA2 gene
product.
Length = 138
Score = 30.6 bits (70), Expect = 0.26
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 163 KVKKKKEEGKKKKKKKKKKKKKKKK 187
K K+K GK K +KK+K + +K
Sbjct: 4 KHKRKATGGKFKVVRKKRKYELGRK 28
>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like
domain of myomesin and M-protein. Ig_Myomesin_like_C:
domain similar to the C-temrinal immunoglobulin
(Ig)-like domain of myomesin and M-protein. Myomesin and
M-protein are both structural proteins localized to the
M-band, a transverse structure in the center of the
sarcomere, and are candidates for M-band bridges. Both
proteins are modular, consisting mainly of repetitive
Ig-like and fibronectin type III (FnIII) domains.
Myomesin is expressed in all types of vertebrate
striated muscle; M-protein has a muscle-type specific
expression pattern. Myomesin is present in both slow and
fast fibers; M-protein is present only in fast fibers.
It has been suggested that myomesin acts as a molecular
spring with alternative splicing as a means of modifying
its elasticity.
Length = 92
Score = 29.8 bits (67), Expect = 0.27
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 64 LVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAV 123
+V MEG + L C P W K N + +A Y + Y LTIK V
Sbjct: 10 VVTIMEGKTLNLTCTVFGDPDPEVSWLK-NDQALALSDHYNVKVEQGKY---ASLTIKGV 65
Query: 124 TKQDFGAYKCVSKNSLG 140
+ +D G Y V KN G
Sbjct: 66 SSEDSGKYGIVVKNKYG 82
>gnl|CDD|219947 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA
replication regulator is required for loading and
maintenance of Cdc45 on chromatin during DNA
replication.
Length = 437
Score = 31.3 bits (71), Expect = 0.29
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 146 IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
+ L + K +KE +KK+ K+ + + K++K++K+KK KK+
Sbjct: 116 LALELDRFTKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDL 160
Score = 28.6 bits (64), Expect = 2.3
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 139 LGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
L + K+ KKK ++ + + + K ++K++K+KK KK+ V
Sbjct: 116 LALELDRFTKFEKEYKKKLLKRSQNLDRSK----RRKRRKRKKNKKQDLPVL 163
Score = 27.9 bits (62), Expect = 3.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 156 KKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K EKE K K K + K++K++K+KK K ++
Sbjct: 124 TKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLP 161
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex which
functions in messenger ribonucleoprotein metabolism and
plays a role in preventing the transcription-associated
genetic instability. Tho2, along with four other
subunits forms THO.
Length = 296
Score = 31.1 bits (71), Expect = 0.29
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 138 SLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
SL D +LY K+ ++ +K+ ++ KKKK+KK+ K KK + + KK
Sbjct: 18 SLYDIYVPKELYDKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKK 73
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 31.0 bits (70), Expect = 0.30
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKK 183
EK+KK K KK + K KK + KKK +
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 29.4 bits (66), Expect = 0.98
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 167 KKEEGKKKKKKKKKKKKKKKKKVKE 191
KK++GK KK K K KK + KKK +E
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKARE 115
Score = 28.3 bits (63), Expect = 2.3
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKK 176
KKKK K K+ K+K KK+E KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.1 bits (60), Expect = 4.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 155 KKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
++K KKKK + KK K K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.1 bits (60), Expect = 5.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKK 174
KKKK K K+ + K KK +++ K +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 26.7 bits (59), Expect = 6.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
+ K +K++ K KK K K KK + KK + W
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAREGW 117
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 31.3 bits (71), Expect = 0.31
Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 27/84 (32%)
Query: 137 NSLGDTDGSIKLYGKKKKKKKKEKE---------------------------KKVKKKKE 169
N D S K K+KKK KK+ +K K K E
Sbjct: 64 NKTDDLKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTE 123
Query: 170 EGKKKKKKKKKKKKKKKKKVKEKK 193
+ KKK K KKKKK + K
Sbjct: 124 KLKKKITVNKSTNKKKKKVLSSKD 147
Score = 31.0 bits (70), Expect = 0.37
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 135 SKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
SKN+ G + + +K K K EK KK + KKKKK K + K
Sbjct: 99 SKNNSKQFAGPLAISLMRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIK 151
Score = 29.8 bits (67), Expect = 1.1
Identities = 17/58 (29%), Positives = 23/58 (39%)
Query: 135 SKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+ + +I L K K K +K K+K K KKKK K + K K K
Sbjct: 101 NNSKQFAGPLAISLMRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPK 158
Score = 27.1 bits (60), Expect = 8.0
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 101 SKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEK 160
S I L N I + + K+SL + D + KL+ K KK KK
Sbjct: 10 SSENTIDLKNPLFIKNLKHSSYKIRL-----ESDIKDSLLNLDINKKLHEKLDKKNKK-- 62
Query: 161 EKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
K ++ K KK K K+KKK KKK+
Sbjct: 63 ----FNKTDDLKDSKKTKLKQKKKIKKKL 87
>gnl|CDD|236172 PRK08173, PRK08173, DNA topoisomerase III; Validated.
Length = 862
Score = 31.2 bits (71), Expect = 0.31
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ K KK K K +K KK KK KK
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKK 855
Score = 27.3 bits (61), Expect = 5.7
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
K KK K K +K KK KK KK +K
Sbjct: 819 KAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARK 860
Score = 27.3 bits (61), Expect = 6.7
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K KK K + +K KK KK KK +K
Sbjct: 819 KAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARK 860
Score = 26.9 bits (60), Expect = 9.5
Identities = 11/43 (25%), Positives = 13/43 (30%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K KK + + K KK KK KK K
Sbjct: 819 KAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 31.0 bits (70), Expect = 0.31
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
+LY +K++ + K+++ ++ K E KKKKK KK+K + KV KKW
Sbjct: 42 RLYKVYEKREFELKKQQFEQLKAELSKKKKKFKKEKVDVRVKVV-KKW 88
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 31.2 bits (71), Expect = 0.31
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 148 LYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
L + K++ + K ++ E+ + K+KKK+KKK++KK K
Sbjct: 301 LLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKK 343
Score = 30.0 bits (68), Expect = 0.75
Identities = 16/43 (37%), Positives = 31/43 (72%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K+K K K E++ + + + KKK+KKK++KKKK+ ++++E+
Sbjct: 309 LKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEER 351
Score = 30.0 bits (68), Expect = 0.83
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ + ++K+K K E +K + K+KKK+KKK ++KK
Sbjct: 303 FEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKK 342
Score = 28.9 bits (65), Expect = 1.5
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
K K +++ EK + KE+ K+KKK++KKKK+ ++ + + +K
Sbjct: 314 KSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKL 355
Score = 28.5 bits (64), Expect = 2.5
Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+ +K E ++K K+KK+E KKKK+ ++ +++ +K +V+
Sbjct: 318 ERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQAT 360
Score = 27.3 bits (61), Expect = 6.0
Identities = 13/40 (32%), Positives = 28/40 (70%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
K K ++ EK K+K++ KKK++KKKK+ ++ +++++
Sbjct: 314 KSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIE 353
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 30.8 bits (70), Expect = 0.31
Identities = 8/40 (20%), Positives = 26/40 (65%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ +++E+EK+ ++++E + K + ++ + K+K + +K
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQK 160
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 30.8 bits (70), Expect = 0.32
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++E E + +EE KKKKKKKKKK KK
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSA 202
Score = 29.6 bits (67), Expect = 0.77
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
KKKKKKKK+K KK + +
Sbjct: 182 KKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAG 219
Score = 29.6 bits (67), Expect = 0.87
Identities = 10/43 (23%), Positives = 14/43 (32%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKKKK KK + + + + K KK
Sbjct: 187 KKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKK 229
Score = 27.3 bits (61), Expect = 4.6
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKKKKK K+ + + + + K+ K
Sbjct: 186 KKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLK 228
Score = 26.9 bits (60), Expect = 6.3
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ K + +E++ KKKK++ KKK KK + V
Sbjct: 169 VELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAV 210
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 30.8 bits (70), Expect = 0.32
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKK 185
KK+K ++E +V K+ + KK KKK+K K+
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKR 38
Score = 29.6 bits (67), Expect = 0.91
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KK+K +E V+ K+ K KKK KKK+K K E
Sbjct: 5 KKRKARQELAVQVAKQ--AKAKKKANKKKRKIYFKRAES 41
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 30.9 bits (70), Expect = 0.33
Identities = 13/55 (23%), Positives = 20/55 (36%)
Query: 134 VSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
S + L K+ ++ +K K+ G +K K K KK KK
Sbjct: 157 SSTPNSSRPSTPHLLKAKEGPSRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKK 211
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 31.2 bits (71), Expect = 0.34
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
+ +E +KV ++ E+G + +++ KK+ KK KK+ E
Sbjct: 462 EAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDT 505
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 31.2 bits (70), Expect = 0.36
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKK 181
+KK KK K+KEKK K+K+ + KKK+ + K
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 30.8 bits (69), Expect = 0.45
Identities = 10/32 (31%), Positives = 26/32 (81%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
K E+E++ +++ E+ K++KKK++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRH 114
Score = 30.4 bits (68), Expect = 0.65
Identities = 11/38 (28%), Positives = 27/38 (71%)
Query: 142 TDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKK 179
+D +KL +++ +++ EK+K+ KKK+E+ K+ +++
Sbjct: 78 SDQYVKLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 30.4 bits (68), Expect = 0.66
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKK 181
KK K K+KK +K+KEE KKKKK +
Sbjct: 275 KKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 30.4 bits (68), Expect = 0.69
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 167 KKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K EE ++ +++ +K K++KKK+ KEK+
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKR 109
Score = 30.0 bits (67), Expect = 0.78
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K +K V+KK ++ KKK+KK+K+K++ K KK + +
Sbjct: 185 KSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEG 224
Score = 28.1 bits (62), Expect = 3.1
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
EK+ K K KK+E K+K+K++ K KKK+ + K
Sbjct: 196 EKKSK-KPKKKEKKEKEKERDKDKKKEVEGFKS 227
Score = 27.0 bits (59), Expect = 8.1
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKK 183
+ ++ KK K KK K++KE+ +KKKKKK +
Sbjct: 270 EAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 27.0 bits (59), Expect = 8.7
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
+ K + +E +K K KK++ +K+K++KKKKKK +
Sbjct: 265 EPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 30.8 bits (70), Expect = 0.37
Identities = 14/64 (21%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 130 AYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
+ K + + L + + +K KK +K +EKEK++++ ++ +++K+ K ++ +KK+
Sbjct: 302 SLKEIHEARLNEEERELK---KKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKL 358
Query: 190 KEKK 193
++ +
Sbjct: 359 EDLE 362
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 31.0 bits (70), Expect = 0.39
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K++ KK+ +E+ K E KKK + KKK + + K E K
Sbjct: 144 AKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAK 186
Score = 29.0 bits (65), Expect = 1.3
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ +++ K + + KKK E KKK + + K K + K K K ++
Sbjct: 151 QAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEE 193
Score = 28.3 bits (63), Expect = 2.9
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKK---KKKVKEKK 193
K+ + K + E + +KK +E KK+ +++ K K KKK E K
Sbjct: 127 KQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAK 172
Score = 27.5 bits (61), Expect = 4.7
Identities = 9/43 (20%), Positives = 24/43 (55%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K+ ++ ++ +K+K+ + K K+ + K K + + ++K
Sbjct: 102 KAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKA 144
Score = 27.5 bits (61), Expect = 5.1
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ K K + KK E KK + + K K + K K E+
Sbjct: 154 EEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEA 194
Score = 27.1 bits (60), Expect = 5.8
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ K+ +EK+K+ ++ K + + K K + + +KK K + KK
Sbjct: 109 QAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKK 150
Score = 27.1 bits (60), Expect = 6.3
Identities = 9/43 (20%), Positives = 27/43 (62%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ ++ ++KE + + E+ K+ ++ K+ ++K+K+ +E K
Sbjct: 83 QRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAK 125
Score = 27.1 bits (60), Expect = 7.1
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 152 KKKKKKKEKEKKVK---KKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K + E EKK K KK+ E + K K + KKK + K+ +
Sbjct: 132 AKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAE 176
Score = 27.1 bits (60), Expect = 7.4
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKK---KKKKKVKEKK 193
K+ +++ K K KKK KKK + + K K K K K +E K
Sbjct: 150 KQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAK 195
Score = 26.7 bits (59), Expect = 7.8
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K + K K K ++ K K E K K + K + +
Sbjct: 181 AKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAA 223
Score = 26.7 bits (59), Expect = 8.0
Identities = 10/47 (21%), Positives = 25/47 (53%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+L + +K ++ ++ K+ EE +K+ ++ K K+ + K E +
Sbjct: 93 ELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAE 139
Score = 26.7 bits (59), Expect = 8.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK + K+K + K K E K K K ++ K K + K K
Sbjct: 165 KKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAA 207
Score = 26.7 bits (59), Expect = 8.5
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ + +KK KE+ K+ +EE K K + KKK + KK E +
Sbjct: 136 AEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAE 178
Score = 26.7 bits (59), Expect = 8.7
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ ++K+K+ +E K K+ E K + + +KK K++ KK E++
Sbjct: 113 QAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEE 155
>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional.
Length = 132
Score = 30.0 bits (68), Expect = 0.39
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKK 182
L KKK +K KE K ++KK GK+K K KKK
Sbjct: 97 GLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 27.3 bits (61), Expect = 3.1
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 141 DTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
D ++K + K + + KK K ++ K+ K ++KK + K+K KV KK
Sbjct: 79 DNLAALKKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKK 131
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 30.4 bits (69), Expect = 0.39
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 149 YGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
Y + K K E+ + + K+++ + +KK+ KKK
Sbjct: 156 YAEWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKK 195
Score = 29.6 bits (67), Expect = 0.71
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K + +E K+++ + +KK+ K+KK
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 29.6 bits (67), Expect = 0.86
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 149 YGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKK 184
K ++ E+ + KEE + +KK+ KKKK
Sbjct: 161 DAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 27.7 bits (62), Expect = 3.3
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 149 YGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKK 185
K ++ +E + +E + + +KK+ KKKK
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
>gnl|CDD|143178 cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig)-like domain of
neural cell adhesion molecule NCAM-1 and similar
proteins. Ig1_NCAM-1 like: first immunoglobulin
(Ig)-like domain of neural cell adhesion molecule
NCAM-1. NCAM-1 plays important roles in the development
and regeneration of the central nervous system, in
synaptogenesis and neural migration. NCAM mediates
cell-cell and cell-substratum recognition and adhesion
via homophilic (NCAM-NCAM), and heterophilic
(NCAM-nonNCAM), interactions. NCAM is expressed as three
major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves the Ig1, Ig2, and Ig3
domains. By this model, Ig1 and Ig2 mediate dimerization
of NCAM molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain. Also included in this group is
NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2
is differentially expressed in the developing and mature
olfactory epithelium (OE).
Length = 92
Score = 29.4 bits (66), Expect = 0.41
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 70 GDQMTLECHSEAYPKSINYWTKENGE-IIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDF 128
G+ C PK I+ W NGE ++ Q I + + LTI +D
Sbjct: 15 GESKFFLCQVIGEPKDIS-WFSPNGEKLVTQQ----QISVVQNDDVRSTLTIYNANIEDA 69
Query: 129 GAYKCVSKNSLGDT 142
G YKCV+ ++ G
Sbjct: 70 GIYKCVATDAKGTE 83
>gnl|CDD|143175 cd04974, Ig3_FGFR, Third immunoglobulin (Ig)-like domain of
fibroblast growth factor receptor (FGFR). Ig3_FGFR:
third immunoglobulin (Ig)-like domain of fibroblast
growth factor receptor (FGFR). Fibroblast growth factors
(FGFs) participate in morphogenesis, development,
angiogenesis, and wound healing. These FGF-stimulated
processes are mediated by four FGFR tyrosine kinases
(FGRF1-4). FGFRs are comprised of an extracellular
portion consisting of three Ig-like domains, a
transmembrane helix, and a cytoplasmic portion having
protein tyrosine kinase activity. The highly conserved
Ig-like domains 2 and 3, and the linker region between
D2 and D3 define a general binding site for FGFs.
Length = 90
Score = 29.3 bits (66), Expect = 0.42
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 18/92 (19%)
Query: 70 GDQMTLEC--HSEAYPKSINYWTKENGEIIAQGSKYEPILL----------DNAYKIHM- 116
G + C +S+A P W K E+ GSKY P L N
Sbjct: 1 GSDVEFHCKVYSDAQPHIQ--WLKHV-EV--NGSKYGPDGLPYVTVLKVAGINTTDNESE 55
Query: 117 KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L ++ V+ D G Y C++ NS+G + S L
Sbjct: 56 VLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWL 87
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 30.1 bits (68), Expect = 0.42
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
+++ + + E K KKK+E K K +K+K K + KK K
Sbjct: 110 EQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Score = 30.1 bits (68), Expect = 0.45
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 135 SKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKK 185
+ S +T+ K + K+KK++E K ++E K + KK K K K
Sbjct: 102 EEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 29.3 bits (66), Expect = 0.75
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
+ K + K++K+++V K K E +K K + KK K K K
Sbjct: 116 ETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 28.6 bits (64), Expect = 1.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
+ K + KEK+K+ K + K+K K + KK K K K
Sbjct: 115 PETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 28.2 bits (63), Expect = 1.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
+ + K E ++K K++ + K +K+K K + KK K
Sbjct: 112 EDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
Score = 28.2 bits (63), Expect = 2.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
++ + K + K+ KK++ K +K+K K + KK K K K
Sbjct: 111 QEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 27.8 bits (62), Expect = 2.4
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ +++ + K E K+KKK++ K K +K+K K +
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEP 143
Score = 27.8 bits (62), Expect = 2.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
E+E + ++E+ + K + K+KKK++ K K +K
Sbjct: 101 TEEESTDETEQEDPPETKTESKEKKKREVPKPKTEK 136
Score = 27.4 bits (61), Expect = 3.2
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
++ ++ + + + K+KKK++ K K +K K K
Sbjct: 106 TDETEQEDPPETKTESKEKKKREVPKPKTEKEKPK 140
Score = 27.4 bits (61), Expect = 3.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ E+E + K E +KKK++ K K +K+K E K
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPK 144
Score = 26.6 bits (59), Expect = 6.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
++ ++ ++ E K + K+KKK++ K K KEK
Sbjct: 103 EESTDETEQEDPPETKTESKEKKKREVPKPKTEKEK 138
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 30.1 bits (68), Expect = 0.43
Identities = 19/49 (38%), Positives = 34/49 (69%)
Query: 145 SIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
SI L+ ++ +K++KE K+ ++K+ KK+KK+KK+KK +K K+K
Sbjct: 87 SINLFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKS 135
Score = 28.6 bits (64), Expect = 1.6
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++K+ K +KEKK KK+K+ +K KKK K K K KK
Sbjct: 107 EEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKK 149
Score = 28.2 bits (63), Expect = 2.0
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+ ++KE K K+KKE+ +KK +K KKK K K
Sbjct: 102 VSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTK 144
Score = 27.0 bits (60), Expect = 4.8
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K KK+KK++KEKKV +K + K K K KK KK +K+
Sbjct: 113 KAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKE 155
Score = 26.6 bits (59), Expect = 6.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++K+ K K++K +KK+++ +K KKK K K K K
Sbjct: 106 TEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATK 148
Score = 26.3 bits (58), Expect = 8.1
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+K+ K K+++K+ K+KK K KKK K K KK +K
Sbjct: 108 EKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKT 150
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 30.8 bits (70), Expect = 0.45
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 11/54 (20%)
Query: 151 KKKKKKKKEKEKKVKKK-----------KEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ K+K K+K KK KK E ++ + K+ KKKKKKKK K+KK
Sbjct: 16 QNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKK 69
Score = 28.9 bits (65), Expect = 1.6
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 150 GKKKKKKKKEK-------------EKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K+K KKK K + + + +E K+ KKKKKKKKKKKK
Sbjct: 17 NKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLG 72
Score = 28.5 bits (64), Expect = 2.1
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 13/57 (22%)
Query: 150 GKKKKKKKK-------------EKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK KK K E + + K+ KKKKKKKKKKKKK + +
Sbjct: 22 TKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLA 78
Score = 28.1 bits (63), Expect = 3.3
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 161 EKKVKKKKEEGKKKKKKKKKKKKKKK 186
E +VK++K++ K+K KKK KK KK
Sbjct: 7 ENEVKQQKQQNKQKGTKKKNKKSKKD 32
Score = 27.0 bits (60), Expect = 6.8
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKK 186
K+ KKKK+K+KK KKK
Sbjct: 52 NKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSA 88
Score = 27.0 bits (60), Expect = 7.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+ + + K+++ + K+K KKK KK KK V +
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDD 35
Score = 27.0 bits (60), Expect = 7.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 156 KKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
E + K++++ K+K KKK KK KK
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKD 32
Score = 26.6 bits (59), Expect = 9.9
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 135 SKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
SK + D D + + ++ + ++ K KKKK++ KKKK + V
Sbjct: 29 SKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSS 87
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 29.5 bits (67), Expect = 0.47
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 136 KNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKK 183
S D DG + +K+K K +++ + K+KKKKKKK+ +
Sbjct: 43 ARSEPDEDGWTTVTRGGRKRKAGASRNKAAEERRKLKEKKKKKKKELE 90
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 30.8 bits (70), Expect = 0.48
Identities = 11/44 (25%), Positives = 27/44 (61%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
+ K ++++E E+ +K+K+EE K +++ + + K+ EK+
Sbjct: 181 ELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQL 224
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 29.5 bits (66), Expect = 0.48
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 169 EEGKKKKKKKKKKKKKKKKKVKE 191
E+ KKKKKK KK KK KK K+
Sbjct: 98 EKPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.5 bits (66), Expect = 0.60
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 172 KKKKKKKKKKKKKKKKKVKEKK 193
K KKKKKK KK KK KK +K
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 28.7 bits (64), Expect = 0.93
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 169 EEGKKKKKKKKKKKKKKKKKVKEKK 193
E +K KKKKKK KK KK K KK
Sbjct: 95 EPTEKPKKKKKKSKKTKKPKKSSKK 119
Score = 28.3 bits (63), Expect = 1.5
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 170 EGKKKKKKKKKKKKKKKKKVKEK 192
E KKKKKK KK KK KK K+
Sbjct: 98 EKPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.9 bits (62), Expect = 1.9
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 169 EEGKKKKKKKKKKKKKKKKKVKEKK 193
E +K KKKKKK KK KK K K
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSK 118
Score = 27.5 bits (61), Expect = 2.2
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 168 KEEGKKKKKKKKKKKKKKKKK 188
K + KKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKK 119
Score = 27.5 bits (61), Expect = 2.7
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
E +K KKKK KK KK KK KK KK
Sbjct: 95 EPTEKPKKKK---KKSKKTKKPKKSSKKD 120
Score = 25.6 bits (56), Expect = 9.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 152 KKKKKKKEKEKKVKKKKEE 170
KKKKKK +K KK KK ++
Sbjct: 101 KKKKKKSKKTKKPKKSSKK 119
>gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase. Cellulose, an
aggregate of unbranched polymers of beta-1,4-linked
glucose residues, is the major component of wood and
thus paper, and is synthesised by plants, most algae,
some bacteria and fungi, and even some animals. The
genes that synthesise cellulose in higher plants differ
greatly from the well-characterized genes found in
Acetobacter and Agrobacterium sp. More correctly
designated as 'cellulose synthase catalytic subunits',
plant cellulose synthase (CesA) proteins are integral
membrane proteins, approximately 1,000 amino acids in
length. There are a number of highly conserved residues,
including several motifs shown to be necessary for
processive glycosyltransferase activity.
Length = 716
Score = 30.9 bits (70), Expect = 0.49
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 148 LYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
LYG +K+K G++KK K K KKK K KE
Sbjct: 288 LYGYDPPRKEKHPGMTSICCCCFGRRKKPKSASKAKKKDSKRKES 332
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 29.1 bits (66), Expect = 0.51
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 157 KKEKEKKVKKKKEE---GKKKKKKKKKKKKKKKKKV 189
K+EK+KK KK + E KK+KK+ +++K +K V
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKAV 73
>gnl|CDD|115579 pfam06933, SSP160, Special lobe-specific silk protein SSP160. This
family consists of several special lobe-specific silk
protein SSP160 sequences which appear to be specific to
Chironomus (Midge) species.
Length = 758
Score = 30.5 bits (68), Expect = 0.52
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 96 IIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKK 155
++ Q + P L NA K ++ DFG K T G+KK K
Sbjct: 342 LLLQEATCAPALAANAKKSGVR---------DFGPCKA------AKTASGCAKSGEKKVK 386
Query: 156 KKKEKEK-KVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+K EK + K ++ G + K KK+ + + KK E
Sbjct: 387 RKARLEKMRAKCRRAVGNRMKGSMKKRVRSRAKKFGE 423
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 30.6 bits (69), Expect = 0.54
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 132 KCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKK 180
K + S+ D + GKK +KK ++K KV + G KK+ K +
Sbjct: 431 KGGTAESIPDDEEDAPKKGKKNQKKGRDKSSKVPSDSKAGGKKESVKSQ 479
Score = 28.2 bits (63), Expect = 3.0
Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 10/69 (14%)
Query: 135 SKNSLGDTD-GSIKLYGKKKKKKKKEKEKKVKKKKEEG---------KKKKKKKKKKKKK 184
S+ SLG + K KKKK K K E KK KK +KK + K
Sbjct: 400 SEKSLGSNESSPAASNSDKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDK 459
Query: 185 KKKKVKEKK 193
K + K
Sbjct: 460 SSKVPSDSK 468
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 30.4 bits (69), Expect = 0.54
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 136 KNSLGDTDGSIKLYGKKKKKKKKEKEK---KVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KN + S+ K KK K E+ + EE K + + K K K + VKEK
Sbjct: 343 KNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK 402
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 29.6 bits (67), Expect = 0.55
Identities = 17/50 (34%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 145 SIKLYGKKKKKKKKEKEKKVKKKKEEGK-KKKKKKKKKKKKKKKKVKEKK 193
I+ ++K+++K+EKE+K +K+KE GK +K++++K+ ++ +K K K
Sbjct: 13 DIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKP 62
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 30.0 bits (68), Expect = 0.56
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 161 EKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
K K K + K K K KK +++ K++VK
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVK 122
Score = 29.7 bits (67), Expect = 0.94
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KE V K E K K K K K K KK + + K+
Sbjct: 85 PKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKR 119
Score = 28.5 bits (64), Expect = 1.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 146 IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKK 181
I K K K K K K VKK +E+ K++ K + +
Sbjct: 92 IPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 28.1 bits (63), Expect = 2.4
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 155 KKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K+ K + K + K K K KK +++ K+ +
Sbjct: 86 KEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKP 123
Score = 27.3 bits (61), Expect = 5.2
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K + + + K K K K KK +++ K++ K V+ +
Sbjct: 93 PKPEPKPKPKPKPKP----KPVKKVEEQPKREVKPVEPR 127
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 30.0 bits (68), Expect = 0.61
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KL + KK E+ +K ++ K+ GK+ + +K +++ K+KK + EK
Sbjct: 123 KLLAEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEK 168
>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily.
Ig_1: subgroup of the immunoglobulin (Ig) domain found
in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
the Ig superfamily are components of immunoglobulin,
neuroglia, cell surface glycoproteins, such as T-cell
receptors, CD2, CD4, CD8, and membrane glycoproteins,
such as butyrophilin and chondroitin sulfate
proteoglycan core protein. A predominant feature of most
Ig domains is a disulfide bridge connecting the two
beta-sheets with a tryptophan residue packed against the
disulfide bond.
Length = 75
Score = 28.4 bits (63), Expect = 0.62
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 14/71 (19%)
Query: 75 LECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMK-----LTIKAVTKQDFG 129
LEC + +P W K+ G + ++H+ I V +D G
Sbjct: 3 LECAATGHPTPQIAWQKDGGTDFPAARER---------RMHVMPEDDVFFIVDVKIEDTG 53
Query: 130 AYKCVSKNSLG 140
Y C ++N+ G
Sbjct: 54 VYSCTAQNTAG 64
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 30.4 bits (69), Expect = 0.63
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
KK K K K+KK K K + ++ K KKK K
Sbjct: 354 KKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 30.0 bits (68), Expect = 0.82
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KK K K KK KKK K + ++ K KK +K
Sbjct: 352 PIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 29.2 bits (66), Expect = 1.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
KK K + +KK KK K + ++ K KKKVK+
Sbjct: 352 PIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 28.8 bits (65), Expect = 1.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK KK K K KKKK+ G K + ++ K K+ K
Sbjct: 350 KKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVK 392
>gnl|CDD|143212 cd05735, Ig8_DSCAM, Eight immunoglobulin (Ig) domain of Down
Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM:
the eight immunoglobulin (Ig) domain of Down Syndrome
Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion
molecule expressed largely in the developing nervous
system. The gene encoding DSCAM is located at human
chromosome 21q22, the locus associated with the mental
retardation phenotype of Down Syndrome. DSCAM is
predicted to be the largest member of the IG
superfamily. It has been demonstrated that DSCAM can
mediate cation-independent homophilic intercellular
adhesion.
Length = 88
Score = 28.8 bits (64), Expect = 0.64
Identities = 20/79 (25%), Positives = 35/79 (44%)
Query: 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFG 129
G + + C + I W KE+ I + S+Y + ++ L I ++D G
Sbjct: 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSG 60
Query: 130 AYKCVSKNSLGDTDGSIKL 148
+ C + NS G+ G I+L
Sbjct: 61 FFSCHAINSYGEDRGIIQL 79
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 30.1 bits (68), Expect = 0.64
Identities = 10/32 (31%), Positives = 25/32 (78%)
Query: 155 KKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKK 186
K+K+E+E++V++++E G + ++ + K+K K+
Sbjct: 121 KQKEEEERRVERRRELGLEDPEQLRLKQKAKE 152
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 30.3 bits (69), Expect = 0.66
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 145 SIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKK 186
S K+ K K+ E+E K KEE K K + +K
Sbjct: 9 SKNALKKRLKAKQAEEE---KAAKEEAKAAAAAAAAKGRSRK 47
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 30.4 bits (69), Expect = 0.70
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 141 DTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
D +K+ + +K+KE K+ EE KK++KK+K K+++K+++
Sbjct: 632 DISELMKIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKERI 680
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 30.3 bits (68), Expect = 0.70
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ + +E + +K +EEG KK KK KK K KK +K
Sbjct: 315 EQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKD 354
Score = 28.4 bits (63), Expect = 2.5
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 139 LGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
L + + + ++ E+EK ++ K KK KK K KK K
Sbjct: 304 LSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDK 353
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 30.2 bits (68), Expect = 0.71
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 136 KNSLGDTDGSIKL--YGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KN L + + +KL Y K ++ E K K+E KK+K+ K++ K K
Sbjct: 321 KNPLKNLNAMLKLNPYAKTARRMALLAEAARVKAKKEKLAKKRKQVSKEEAAAIKAAGKA 380
Query: 194 W 194
W
Sbjct: 381 W 381
>gnl|CDD|218437 pfam05107, DUF694, Family of unknown function (DUF694). Family of
hypothetical bacterial proteins.
Length = 278
Score = 29.9 bits (68), Expect = 0.71
Identities = 15/43 (34%), Positives = 31/43 (72%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
++K+K ++ ++ ++ + ++ K+KKKKKKKKKKK + ++W
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 28.4 bits (64), Expect = 2.1
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE--KKW 194
K+K + + + + EE K+KKKKKKKKKKK++ + +K+
Sbjct: 65 KEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREWMCEKF 110
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 29.8 bits (67), Expect = 0.77
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKK--KKKKKKKKKKKKKKKVK 190
+ K +K K + E KK ++KK++KKK KKKKV
Sbjct: 39 QDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKKVP 79
Score = 27.5 bits (61), Expect = 4.7
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 136 KNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKK 185
N + + +K K + + + KK ++KK++KKK KKKK
Sbjct: 28 GNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKK 77
Score = 27.1 bits (60), Expect = 5.0
Identities = 10/50 (20%), Positives = 22/50 (44%)
Query: 144 GSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
G + + + K+ + + +K K K++G + K + K +K K
Sbjct: 1 GKRQDFFRAKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLI 50
>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in
neogenin and similar proteins. Ig4_Neogenin: fourth
immunoglobulin (Ig)-like domain in neogenin and related
proteins. Neogenin is a cell surface protein which is
expressed in the developing nervous system of vertebrate
embryos in the growing nerve cells. It is also expressed
in other embryonic tissues, and may play a general role
in developmental processes such as cell migration,
cell-cell recognition, and tissue growth regulation.
Included in this group is the tumor suppressor protein
DCC, which is deleted in colorectal carcinoma . DCC and
neogenin each have four Ig-like domains followed by six
fibronectin type III domains, a transmembrane domain,
and an intracellular domain.
Length = 71
Score = 28.0 bits (62), Expect = 0.77
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYK 132
+ EC P W K NG+++ S Y I+ ++ L + + K D G Y+
Sbjct: 2 IVFECEVTGKPTPTVKWVK-NGDMVIP-SDYFKIVKEH------NLQVLGLVKSDEGFYQ 53
Query: 133 CVSKNSLGDTDGSIKL 148
C+++N +G+ +L
Sbjct: 54 CIAENDVGNVQAGAQL 69
>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase
component YidC; Provisional.
Length = 304
Score = 29.6 bits (67), Expect = 0.80
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 148 LYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKK 186
++GK K+++ +K+ K +++ K K K+ KKK
Sbjct: 266 VFGKIDKEEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 30.0 bits (68), Expect = 0.81
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 165 KKKKEEGKKKKKKKKKKKKKKKKKVK 190
+ K+K++ KK+KKKK KK+K
Sbjct: 349 RPLALSPKRKREGDKKQKKKKSKKLK 374
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 30.1 bits (68), Expect = 0.81
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K +K E +K +++ +EE ++ K KKKK+KKK+ EK
Sbjct: 399 AKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEK 440
Score = 28.1 bits (63), Expect = 3.6
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 146 IKLYGKKKKKKKKEKEKK----VKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
I Y K +K + KK ++++ E K KKKK+KKK+ +
Sbjct: 393 IAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEKFR 442
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 30.0 bits (68), Expect = 0.83
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKK 181
KK+KKK+K K + + K + K+K+K KK K
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLK 657
Score = 29.6 bits (67), Expect = 0.98
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKK 182
G KK+KKK++++++ K E KK+K+K KK K
Sbjct: 625 GIKKRKKKRKRKRRFLTKIEGVKKEKRKDKKLK 657
Score = 29.3 bits (66), Expect = 1.3
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 137 NSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
N T S+ KK+ KKK K K + K K KKKKKK+K + +
Sbjct: 494 NPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDD 549
Score = 28.1 bits (63), Expect = 3.8
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K+++ K K + K K K K KKKK KEK
Sbjct: 500 TSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKS 543
Score = 27.7 bits (62), Expect = 4.6
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K KK+ K+K K + K K K KKKKKK+
Sbjct: 504 GKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDL 546
Score = 27.3 bits (61), Expect = 5.9
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK+ K+K K K K KKKKKK+K +
Sbjct: 507 AKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDD 548
Score = 26.9 bits (60), Expect = 7.4
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K KK++ +KK K ++ K K K KKKKKK K
Sbjct: 503 VGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSID 545
Score = 26.6 bits (59), Expect = 9.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK+ KK+ K+ K + K K KKKKKK+K +
Sbjct: 507 AKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDD 549
>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Ig4_Robo: domain similar to the
third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Robo receptors play a role in
the development of the central nervous system (CNS), and
are receptors of Slit protein. Slit is a repellant
secreted by the neural cells in the midline. Slit acts
through Robo to prevent most neurons from crossing the
midline from either side. Three mammalian Robo homologs
(robo1, -2, and -3), and three mammalian Slit homologs
(Slit-1,-2, -3), have been identified. Commissural
axons, which cross the midline, express low levels of
Robo; longitudinal axons, which avoid the midline,
express high levels of Robo. robo1, -2, and -3 are
expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 90
Score = 28.4 bits (63), Expect = 0.84
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMK--LTIKAVTKQD 127
G +T +C + P+ +W KE + + Y+P + + + LTI V + D
Sbjct: 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLL--FSYQPPQSSSRFSVSQTGDLTITNVQRSD 58
Query: 128 FGAYKCVSKNSLG 140
G Y C + N G
Sbjct: 59 VGYYICQTLNVAG 71
>gnl|CDD|236698 PRK10475, PRK10475, 23S rRNA pseudouridine synthase F; Provisional.
Length = 290
Score = 29.7 bits (67), Expect = 0.91
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K K K K +K+ + +K +K + K+ +
Sbjct: 244 KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGR 285
Score = 28.9 bits (65), Expect = 1.7
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K K K K+ K E+ +K + K+ ++KK
Sbjct: 246 KAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function
unknown].
Length = 622
Score = 29.8 bits (66), Expect = 0.97
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KL K +++++ KE+++KK K++ K KK+ KK KK K
Sbjct: 436 KLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHA 481
>gnl|CDD|234874 PRK00955, PRK00955, hypothetical protein; Provisional.
Length = 620
Score = 29.5 bits (67), Expect = 1.0
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 149 YGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
G K K+ +KK KK KK+KKK+KK
Sbjct: 582 NGPKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 28.0 bits (63), Expect = 4.1
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKK 185
KK +K+ K KK+KKK+KK
Sbjct: 582 NGPKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 29.6 bits (66), Expect = 1.0
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
L GK + K K E E + KKK K+ KK K +KK
Sbjct: 261 ALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKKA 303
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 29.4 bits (66), Expect = 1.0
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ KKK E K K + K +K K +K K
Sbjct: 212 AAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAK 254
Score = 27.8 bits (62), Expect = 4.2
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK + + K+K KKK + K K + K K
Sbjct: 201 KKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAA 243
Score = 26.7 bits (59), Expect = 8.9
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 155 KKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KKK E E K K E KK + K K + K
Sbjct: 200 KKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAA 237
>gnl|CDD|153340 cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs, all of which are expressed
during embryonic and early development in the nervous
system but with different localization and timing.
srGAPs contain an N-terminal F-BAR domain, a Rho GAP
domain, and a C-terminal SH3 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 241
Score = 29.2 bits (66), Expect = 1.0
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 155 KKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+K KE EK+ ++K+E +KK ++ + KK +K EK+
Sbjct: 152 RKLKEAEKQ--EEKQEQSPEKKLERSRSSKKIEKEVEKR 188
Score = 29.2 bits (66), Expect = 1.2
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 150 GKKKKK-KKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K+ K++EK+++ +KK E + KK +K+ +K++ K E K
Sbjct: 152 RKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAK 196
>gnl|CDD|218337 pfam04939, RRS1, Ribosome biogenesis regulatory protein (RRS1).
This family consists of several eukaryotic ribosome
biogenesis regulatory (RRS1) proteins. RRS1 is a nuclear
protein that is essential for the maturation of 25 S
rRNA and the 60 S ribosomal subunit assembly in
Saccharomyces cerevisiae.
Length = 164
Score = 28.8 bits (65), Expect = 1.1
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 149 YGKKKKKKKKEK----EKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+G K+ K EK E K +E KK+++KK++ K + +E K
Sbjct: 113 WGYKRANKDLEKDWIIEVKPNDDPKEDPFAKKRREKKERVAKNEKRELK 161
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 28.2 bits (63), Expect = 1.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
GK K K+ K K+ + G + +K K KK KK K KW
Sbjct: 25 GKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKGCKW 69
Score = 25.9 bits (57), Expect = 7.8
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
KK K K + KEK K K+E K K K+ K KK V +
Sbjct: 3 KKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAG 46
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 28.9 bits (65), Expect = 1.1
Identities = 14/43 (32%), Positives = 36/43 (83%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+KK ++K+E E+K +++ EE ++KKK+++++K+++++ KE++
Sbjct: 31 RKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQE 73
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 29.5 bits (66), Expect = 1.1
Identities = 17/43 (39%), Positives = 17/43 (39%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK KE K K K K KK K KK K K KK
Sbjct: 20 AKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKK 62
Score = 28.0 bits (62), Expect = 2.8
Identities = 18/43 (41%), Positives = 20/43 (46%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK ++KK KK KE K KK K K KK K KK
Sbjct: 10 KKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKK 52
Score = 28.0 bits (62), Expect = 3.5
Identities = 15/42 (35%), Positives = 16/42 (38%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K KK K K K+ K KK K K KK EK
Sbjct: 29 TAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKT 70
Score = 27.6 bits (61), Expect = 4.3
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KK KE KK + K KK K KK K VK
Sbjct: 19 AAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTT 59
Score = 27.6 bits (61), Expect = 4.8
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K KK K K KKV K E+ + KK+ KK KK+ V +
Sbjct: 46 KAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEV 92
Score = 27.2 bits (60), Expect = 5.0
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KK KKK +EKK KK K+ K KK K K +K
Sbjct: 5 KKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKK 46
Score = 27.2 bits (60), Expect = 5.6
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K KK K K KK + KK K K KK K K +
Sbjct: 31 KTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTES 72
>gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain. This presumed domain is
found at the C-terminus of a family of FtsJ-like
methyltransferases. Members of this family are involved
in 60S ribosomal biogenesis.
Length = 212
Score = 29.2 bits (66), Expect = 1.1
Identities = 19/39 (48%), Positives = 21/39 (53%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKK 185
KLY K KKKKKK K+ V KK K + K K K K
Sbjct: 155 KLYKKAKKKKKKRKKTYVVAKKGNKGKAGRPKGVKGKYK 193
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 29.5 bits (67), Expect = 1.1
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
K+ + K E ++ E K+ K+K K+ + + E
Sbjct: 56 SKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAE 97
Score = 29.1 bits (66), Expect = 1.6
Identities = 8/40 (20%), Positives = 23/40 (57%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ ++ E K++ + + G+ ++ + K+ K+K+KE +
Sbjct: 49 QAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELE 88
Score = 27.6 bits (62), Expect = 4.6
Identities = 5/41 (12%), Positives = 21/41 (51%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+ K+ ++ +++ + +E K+K K+ + + + ++
Sbjct: 60 GRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDT 100
Score = 26.8 bits (60), Expect = 8.3
Identities = 11/60 (18%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 136 KNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKK--EEGKKKKKKKKKKKKKKKKKVKEKK 193
D D ++L +++K ++ +E + ++ + +E + K+ + ++ +VKE K
Sbjct: 22 GGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELK 81
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 29.6 bits (66), Expect = 1.1
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK + +E KV++ KE + KKKK KK K+ K+ + K
Sbjct: 224 KKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQNK 264
Score = 29.3 bits (65), Expect = 1.3
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKK----KKKKKKKKKKKKKVKE 191
+K+ E E+ KK E+G++ K K+ + KKKK KKVKE
Sbjct: 212 EKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKE 254
>gnl|CDD|216807 pfam01956, DUF106, Integral membrane protein DUF106. This
archaebacterial protein family has no known function.
Members are predicted to be integral membrane proteins.
Length = 168
Score = 28.8 bits (65), Expect = 1.1
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 149 YGKKKKKKKKEKE--KKVKKKKEEGKKKKKKKKKKKKK 184
K +K +K+EKE K+ ++ ++ G K KK +K+++
Sbjct: 39 DRKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQE 76
Score = 28.4 bits (64), Expect = 1.5
Identities = 11/37 (29%), Positives = 25/37 (67%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
+K +K +++EK+++K+ E +K K KK +K+++
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQE 76
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many hypothetical
proteins.
Length = 98
Score = 28.2 bits (63), Expect = 1.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 155 KKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+++KK K+ + + K KK +KK KKK + E
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFP 57
Score = 27.8 bits (62), Expect = 1.3
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK+KKKK++ K + K K +KK KKK + + + +++
Sbjct: 20 NIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRR 63
Score = 27.4 bits (61), Expect = 2.1
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK+KKKKK K + K + +KK KKK + + ++ K ++
Sbjct: 22 KKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
Score = 27.4 bits (61), Expect = 2.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK++K+KK K K KK +KK KKK + ++
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEE 59
Score = 27.4 bits (61), Expect = 2.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+KKKKK+ K + K K+ KK KKK + + ++ K +
Sbjct: 23 KRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
Score = 26.7 bits (59), Expect = 3.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K++KK +K ++ + KK+KKKKK+ K + K +K
Sbjct: 1 KEEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKG 43
Score = 25.5 bits (56), Expect = 9.2
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 135 SKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
K + D +IK KKKK+ K K KK ++ KKK + + ++ K++
Sbjct: 10 DKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRR 63
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 29.4 bits (67), Expect = 1.2
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 172 KKKKKKKKKKKKKKKKKVKEK 192
+K++ KKKKK+KK KK EK
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 28.7 bits (65), Expect = 2.2
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 173 KKKKKKKKKKKKKKKKVKEKK 193
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 28.7 bits (65), Expect = 2.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 171 GKKKKKKKKKKKKKKKKKVK 190
K++ KKKKK+KK KK +V+
Sbjct: 733 EKRRLKKKKKRKKVKKWEVE 752
Score = 28.7 bits (65), Expect = 2.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 170 EGKKKKKKKKKKKKKKKKKVK 190
E ++ KKKKK+KK KK + K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 27.1 bits (61), Expect = 7.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 175 KKKKKKKKKKKKKKVKEKKW 194
+K++ KKKKK+KK K +
Sbjct: 733 EKRRLKKKKKRKKVKKWEVE 752
>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II
(D2) of the human basement membrane heparan sulfate
proteoglycan perlecan, also known as HSPG2.
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain
II (D2) of the human basement membrane heparan sulfate
proteoglycan perlecan, also known as HSPG2. Perlecan
consists of five domains. Domain I has three putative
heparan sulfate attachment sites; domain II has four LDL
receptor-like repeats, and one Ig-like repeat; domain
III resembles the short arm of laminin chains; domain IV
has multiple Ig-like repeats (21 repeats in human
perlecan); and domain V resembles the globular G domain
of the laminin A chain and internal repeats of EGF.
Perlecan may participate in a variety of biological
functions including cell binding, LDL-metabolism,
basement membrane assembly and selective permeability,
calcium binding, and growth- and neurite-promoting
activities.
Length = 78
Score = 27.8 bits (62), Expect = 1.2
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFG 129
G+ + C + P I W G + + + + LTI+ V + D G
Sbjct: 1 GETVEFTCVATGVPTPIINWRLNWGHVPDS-----ARVSITSEGGYGTLTIRDVKESDQG 55
Query: 130 AYKCVSKNSLG 140
AY C + N+ G
Sbjct: 56 AYTCEAINTRG 66
>gnl|CDD|221856 pfam12922, Cnd1_N, non-SMC mitotic condensation complex subunit 1,
N-term. The three non-SMC (structural maintenance of
chromosomes) subunits of the mitotic condensation
complex are Cnd1-3. The whole complex is essential for
viability and the condensing of chromosomes in mitosis.
This is the conserved N-terminus of the subunit 1.
Length = 169
Score = 28.8 bits (65), Expect = 1.3
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 161 EKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
EK K + K KKK+KK KK V KW
Sbjct: 59 EKAEKSAAAAPARAGKGKKKRKKAKKAVVASWKW 92
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 29.3 bits (66), Expect = 1.3
Identities = 7/43 (16%), Positives = 29/43 (67%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K + +KKE+ +++ + + K++ ++K+++ ++ K+ + +++
Sbjct: 63 KLEVARKKERLNQIRARISQLKEEIEQKRERIEELKRALAQRR 105
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 29.1 bits (66), Expect = 1.3
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 139 LGDTDGSIKLYGKKKKKKKKEKEKK--------VKKKKEEGKKKKKKKKKKKKKKKKKVK 190
LG G + KK K +E+K +KK+ E+ + + + ++
Sbjct: 35 LGKK-GVLTDLLKKLGKLSPLEERKEVGALINELKKEVEDAITELTPELEAAGLWERLAF 93
Query: 191 EK 192
EK
Sbjct: 94 EK 95
>gnl|CDD|241262 cd01228, PH_BCR-related, Breakpoint Cluster Region-related
pleckstrin homology (PH) domain. The BCR gene is one of
the two genes in the BCR-ABL complex, which is
associated with the Philadelphia chromosome, a product
of a reciprocal translocation between chromosomes 22 and
9. BCR is a GTPase-activating protein (GAP) for RAC1
(primarily) and CDC42. The Dbl region of BCR has the
most RhoGEF activity for Cdc42, and less activity
towards Rac and Rho. Since BCR possesses both GAP and
GEF activities, it may function to temporally regulate
the activity of these GTPases. It also displays
serine/threonine kinase activity. The BCR protein
contains multiple domains including an N-terminal kinase
domain, a RhoGEF domain, a PH domain, a C1 domain, a C2
domain, and a C-terminal RhoGAP domain. ABR, a related
smaller protein, is structurally similar to BCR, but
lacks the N-terminal kinase domain and has GAP activity
for both Rac and Cdc42. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 179
Score = 28.8 bits (65), Expect = 1.3
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+ KK ++K+K+ E KK + +K +KK+ E
Sbjct: 93 QMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKKLAE 132
Score = 28.5 bits (64), Expect = 1.8
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 145 SIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKK 183
+++ K+K K ++KK + +K +KK
Sbjct: 91 LVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 28.8 bits (65), Expect = 1.3
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK + +K KK E K K+ K +KK+KK KEKK
Sbjct: 129 KKSEIKKLVLKKKFDELKKSKQLDKALEKKRKKNAGKEKK 168
>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1.
Ig1_Contactin-1: First Ig domain of the neural cell
adhesion molecule contactin-1. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-1 is
differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 93
Score = 28.0 bits (62), Expect = 1.4
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 72 QMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQ-DFGA 130
++++ C + A P I W K N +I +Y + L I K D G
Sbjct: 21 KVSVNCRARANPFPIYKWRKNNLDIDLTNDRYS--------MVGGNLVINNPDKYKDAGR 72
Query: 131 YKCVSKNSLG 140
Y C+ N G
Sbjct: 73 YVCIVSNIYG 82
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 28.5 bits (64), Expect = 1.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 149 YGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
Y ++K K+KE+ ++K+ KK +K + KKK
Sbjct: 156 YAERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKK 195
Score = 26.2 bits (58), Expect = 8.8
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKK 182
K++ ++ KE K+ +K + KKKK
Sbjct: 165 KEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases,
insulinase-like [General function prediction only].
Length = 978
Score = 29.2 bits (66), Expect = 1.5
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+K +KE+ + ++K+ E + +K K KK K+ +++
Sbjct: 463 EKLEKEERELLQKRSSELTDEDLEKIIKDSKKLKERQDQP 502
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 27.3 bits (61), Expect = 1.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
+L G K + +K+KK KKKK E K KK + +
Sbjct: 12 ELLGPKTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 26.2 bits (58), Expect = 4.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 166 KKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K + + KKKKKKKKKK + + K
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAK 44
Score = 25.4 bits (56), Expect = 9.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 172 KKKKKKKKKKKKKKKKKVKEKK 193
KKKKKKKKKK + K KK
Sbjct: 24 KKKKKKKKKKAEDTAATAKAKK 45
>gnl|CDD|236078 PRK07726, PRK07726, DNA topoisomerase III; Provisional.
Length = 658
Score = 29.0 bits (66), Expect = 1.6
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
K K K + V + +E GK+K KK + K K
Sbjct: 618 KPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCPNCKKK 658
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 28.8 bits (64), Expect = 1.7
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K +K K + + K K KK + ++K +KKK K K K
Sbjct: 201 KAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAA 247
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 28.9 bits (65), Expect = 1.8
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 135 SKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKK 183
S +++ + K+K K + K K++KE ++ K++K+ KKK
Sbjct: 257 SAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKK 305
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region. This
domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 27.5 bits (62), Expect = 1.9
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKK--KKKKKKKVKEK 192
++Y K + + +K K+KKE + K+ KK +++K +V +K
Sbjct: 46 EMYKKAHAAIRADPSRKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 26.0 bits (58), Expect = 5.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 162 KKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK +KKK+KK+ K + K+ KK
Sbjct: 49 KKAHAAIRADPSRKKKEKKEVKAESKRYNAKK 80
>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like
domain of the receptor protein tyrosine phosphatase
(RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like:
domain similar to the second immunoglobulin (Ig)-like
domain found in the receptor protein tyrosine
phosphatase (RPTP)-F, also known as LAR. LAR belongs to
the RPTP type IIa subfamily. Members of this subfamily
are cell adhesion molecule-like proteins involved in
central nervous system (CNS) development. They have
large extracellular portions, comprised of multiple
Ig-like domains and two to nine fibronectin type III
(FNIII) domains, and a cytoplasmic portion having two
tandem phosphatase domains.
Length = 74
Score = 26.9 bits (59), Expect = 1.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 118 LTIKAVTKQDFGAYKCVSKNSLG 140
L I+ + D G Y+CV+ NS G
Sbjct: 40 LQIENSEESDQGKYECVATNSAG 62
>gnl|CDD|218581 pfam05416, Peptidase_C37, Southampton virus-type processing
peptidase. Corresponds to Merops family C37.
Norwalk-like viruses (NLVs), including the Southampton
virus, cause acute non-bacterial gastroenteritis in
humans. The NLV genome encodes three open reading frames
(ORFs). ORF1 encodes a polyprotein, which is processed
by the viral protease into six proteins.
Length = 535
Score = 28.7 bits (64), Expect = 1.9
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 135 SKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKK 183
S+ G G + ++ + + + EGKK K KK + KK
Sbjct: 196 SRPPFGHDXEVTYYDGCESEEDDEGWYIEPQDATPEGKKGKNKKGRGKK 244
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 28.1 bits (63), Expect = 2.0
Identities = 9/39 (23%), Positives = 24/39 (61%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+++K + +++ +K ++E +K +K+ KK KK + +
Sbjct: 92 EEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPVQGQ 130
Score = 27.0 bits (60), Expect = 3.8
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
+ +++K E K+ K ++ + +K +K+ KK KK + V
Sbjct: 88 VELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPV 127
>gnl|CDD|143273 cd05865, Ig1_NCAM-1, First immunoglobulin (Ig)-like domain of
neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first
immunoglobulin (Ig)-like domain of neural cell adhesion
molecule NCAM-1. NCAM-1 plays important roles in the
development and regeneration of the central nervous
system, in synaptogenesis and neural migration. NCAM
mediates cell-cell and cell-substratum recognition and
adhesion via homophilic (NCAM-NCAM), and heterophilic
(NCAM-nonNCAM), interactions. NCAM is expressed as three
major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves the Ig1, Ig2, and Ig3
domains. By this model, Ig1 and Ig2 mediate dimerization
of NCAM molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain.
Length = 96
Score = 27.3 bits (60), Expect = 2.0
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 80 EAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKN-S 138
EA K I+ W NGE + + ++ ++ Y LTI D G YKCV N
Sbjct: 27 EAKDKDIS-WFSPNGEKLTPNQQRISVVRNDDYS--STLTIYNANIDDAGIYKCVVSNED 83
Query: 139 LGDTDGSIKL 148
G+++ ++ +
Sbjct: 84 EGESEATVNV 93
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 28.7 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
G++ K KK +K KK ++ G KK+KKK K +K
Sbjct: 606 GRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRK 649
Score = 27.6 bits (61), Expect = 5.3
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKK-------KKKKKKK 188
G ++ K KK K+ K ++ G KK+KKK KK +KK
Sbjct: 605 GGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKK 650
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7
homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 28.0 bits (63), Expect = 2.0
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 136 KNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKK 181
K + D DG + + K ++ K KE K E+ KKKKKKK+ K
Sbjct: 43 KEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKEKKKKKKKELK 88
>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell
adhesion molecule contactin-2 and similar proteins.
Ig4_Contactin-2-like: fourth Ig domain of the neural
cell adhesion molecule contactin-2. Contactins are
comprised of six Ig domains followed by four fibronectin
type III (FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-2 (aliases
TAG-1, axonin-1) facilitates cell adhesion by homophilic
binding between molecules in apposed membranes. The
first four Ig domains form the intermolecular binding
fragment which arranges as a compact U-shaped module by
contacts between Ig domains 1 and 4, and domains 2 and
3. It has been proposed that a linear zipper-like array
forms, from contactin-2 molecules alternatively provided
by the two apposed membranes.
Length = 85
Score = 27.2 bits (60), Expect = 2.1
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFG 129
G + EC + P+ W K NG+ +A I ++ L I ++ D G
Sbjct: 14 GSSLRWECKASGNPRPAYRWLK-NGQPLA---SENRIEVEAG-----DLRITKLSLSDSG 64
Query: 130 AYKCVSKNSLGDTDGSIKL 148
Y+CV++N G S +L
Sbjct: 65 MYQCVAENKHGTIYASAEL 83
>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 137 to 196
amino acids in length.
Length = 149
Score = 28.1 bits (63), Expect = 2.1
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKK 186
K+ +K+ K ++K K K+KK K K+
Sbjct: 12 PKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 27.3 bits (61), Expect = 4.1
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+K+ + K + K K K K K K+KK K K
Sbjct: 3 SSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 26.9 bits (60), Expect = 4.4
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+K+ + K+ +KK + +K K K K+KK K K
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAA 44
Score = 26.1 bits (58), Expect = 9.4
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKK 184
+ K+ +KK K + + K+KK K K+
Sbjct: 8 LPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 27.6 bits (62), Expect = 2.1
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 141 DTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKK----------KKKKKVK 190
D DG + + +K +E ++E+ +K+KKKKKKK+ KKK++
Sbjct: 49 DEDGFVTVVRGGRKGPAAGEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQA 108
Query: 191 E 191
+
Sbjct: 109 D 109
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 28.6 bits (64), Expect = 2.1
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 139 LGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKK 186
L + S L + E E + K+E KK+K KKK +K+K
Sbjct: 323 LDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKRKVN 370
Score = 27.5 bits (61), Expect = 4.9
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
+++ + + +E ++ +KK+K KKK +K+KV
Sbjct: 339 DEDDEDEDDEESKEEVEKKQKVKKKPRKRKVN 370
Score = 27.1 bits (60), Expect = 6.3
Identities = 12/74 (16%), Positives = 30/74 (40%)
Query: 116 MKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKK 175
M+ + + + + + S+ + ++ E + ++ +E +KK
Sbjct: 298 MRPVRAKPSDEPSLPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKK 357
Query: 176 KKKKKKKKKKKKKV 189
+K KKK +K+K
Sbjct: 358 QKVKKKPRKRKVNP 371
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 28.5 bits (64), Expect = 2.1
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
++ K KK KK K KK KK KK K K+
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKA 293
Score = 28.1 bits (63), Expect = 3.0
Identities = 14/38 (36%), Positives = 15/38 (39%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
G KK K+ KK K KK K KK KK
Sbjct: 259 GGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
>gnl|CDD|143297 cd05889, Ig1_DNAM-1_like, First immunoglobulin (Ig) domain of DNAX
accessory molecule 1 (DNAM-1, also known as CD226) and
similar proteins. Ig1_DNAM-1_like: domain similar to
the first immunoglobulin (Ig) domain of DNAX accessory
molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a
transmembrane protein having two Ig-like domains. It is
an adhesion molecule which plays a part in
tumor-directed cytotoxicity and adhesion in natural
killer (NK) cells and T lymphocytes. It has been shown
to regulate the NK cell killing of several tumor types,
including myeloma cells and ovarian carcinoma cells.
DNAM-1 interacts specifically with poliovirus receptor
(PVR; CD155) and nectin -2 (CD211), other members of the
Ig superfamily. DNAM-1 is expressed in most peripheral T
cells, NK cells, monocytes and a subset of B
lymphocytes.
Length = 96
Score = 27.1 bits (60), Expect = 2.2
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 20/80 (25%)
Query: 71 DQMTLECHSEAYPKSINY----WTKENGEI------------IAQGSKYEP-ILLDNAYK 113
++M LEC YPK+ WTK NG + KY + N+ +
Sbjct: 1 EKMKLEC---VYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTR 57
Query: 114 IHMKLTIKAVTKQDFGAYKC 133
M L+ T++D G Y C
Sbjct: 58 EDMSLSFNNATEEDVGLYCC 77
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 28.2 bits (63), Expect = 2.3
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
+K+ E++ +K+K K++K K + + V
Sbjct: 96 SSADRKEAEQQGAAQKRKSCRDKERKSAKDPRGGTQDVVD 135
>gnl|CDD|235245 PRK04183, PRK04183, glutamyl-tRNA(Gln) amidotransferase subunit D;
Validated.
Length = 419
Score = 28.7 bits (65), Expect = 2.3
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 155 KKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
K E ++ +K E+ K++ K+ +K V
Sbjct: 44 DIDKIAEIELLEKGEKPKQEPPPKEIEKDPGLPNVS 79
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 28.6 bits (64), Expect = 2.4
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 129 GAYKCVSKNS-----LGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKK 183
G Y+ +S N L + G ++ Y ++ +++ ++ KK KKK
Sbjct: 821 GTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKK 880
Query: 184 KKKKK 188
K+ K
Sbjct: 881 SKEGK 885
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 28.0 bits (63), Expect = 2.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
K K+ K K KK +EE + +++K+KKK K K
Sbjct: 4 KSSPKRSKGMAKSKKKTREELDAEARERKRKKKHKGLK 41
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
Length = 977
Score = 28.8 bits (64), Expect = 2.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
E + K + E K KK KKKK KKK+ K
Sbjct: 108 EYGNPIWKNRVESWKDKKNKKKKSAKKKEAHK 139
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 27.0 bits (60), Expect = 2.6
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 163 KVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+K KK + KKKKKKKKKK K K++ V EK+
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKEEVVTEKE 41
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 28.2 bits (63), Expect = 2.7
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ E+ KK ++ + + KK+ ++ K +KK + +KEK+
Sbjct: 82 ASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQ 122
Score = 27.0 bits (60), Expect = 5.7
Identities = 10/41 (24%), Positives = 26/41 (63%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K + +K+ ++ ++ + K++ + KKKK+ ++ K V++K
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 28.3 bits (63), Expect = 2.8
Identities = 8/35 (22%), Positives = 22/35 (62%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKK 185
+K +++++ +E+ ++ K E+ + K + K+K K
Sbjct: 437 RKLQEERRLREEAIRAKAEKTARMKAEMKEKTLKM 471
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 28.2 bits (63), Expect = 2.8
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 17/68 (25%)
Query: 141 DTDGSIKLYGKKKKKKKKEKEKKVKKKKE-----------------EGKKKKKKKKKKKK 183
D+ GS +KK+++ K+K K + KK KKKKKKKK
Sbjct: 227 DSGGSTDDEAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKK 286
Query: 184 KKKKKVKE 191
K++K + E
Sbjct: 287 KRRKDLDE 294
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 28.5 bits (63), Expect = 2.8
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
K K K K++KV +++EE K K K+KK KK+K
Sbjct: 523 KDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMK 561
>gnl|CDD|221820 pfam12870, Lumazine_bd, Lumazine-binding domain. This is a family
of putative lipoproteins from bacteria. Many members of
the family are defined as having a lumazine-binding
domain. Lumazine is a fluorescent accessory protein
having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as
its authentic chromophore; it modulates the emission of
bacterial luciferase to shorter wavelengths with
increasing luminous strength. The family is related to
the NTF2-like transpeptidase family.
Length = 108
Score = 27.1 bits (60), Expect = 2.8
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 140 GDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
GD ++KL ++ + K KE+ K K + K K +KK K +V+EK+
Sbjct: 21 GDYKDAVKLLTEEDRSPDKLKEQFAGKVKMMVDEMKAKIEKKGGVKIIEVEEKE 74
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 28.3 bits (63), Expect = 2.9
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 148 LYGKKKKK--KKKEKEKKVKKKKEEGKK 173
+YG + K K K K+VKK+K+ +K
Sbjct: 18 IYGPRPVKDEAKPRKIKRVKKRKKREEK 45
Score = 27.1 bits (60), Expect = 7.2
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 165 KKKKEEGKKKKKKKKKKKKKKKKK 188
+ K+E K +K K+ KK+KK+++K
Sbjct: 22 RPVKDEAKPRKIKRVKKRKKREEK 45
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 28.3 bits (63), Expect = 2.9
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 120 IKAVTKQDFGAYKCVSKN-SLGDTDGSIKLYGKKKKKKKKEKEKKVKKKK-----EEGKK 173
I + K + + KN + + +G I + +K ++ + E K KK E K
Sbjct: 392 ILQIIKNEGKIISAILKNAEIKEEEGKITIKVEKSEEDTLDLEIKSIKKYFPFIEFEEVK 451
Query: 174 KKKKKKKKKKKKKKKVKE 191
K+K+K+K++ + +KV E
Sbjct: 452 KEKEKEKERPEFVEKVLE 469
Score = 27.9 bits (62), Expect = 3.7
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKK 185
KK+K+K+KE+ + V+K E K K KKKK K
Sbjct: 451 KKEKEKEKERPEFVEKVLELFKGSKIITYKKKKGK 485
>gnl|CDD|217451 pfam03249, TSA, Type specific antigen. There are several antigenic
variants in Rickettsia tsutsugamushi, and a
type-specific antigen (TSA) of 56-kilodaltons located on
the rickettsial surface is responsible for the
variation. TSA proteins are probably integral membrane
proteins.
Length = 502
Score = 28.3 bits (63), Expect = 3.0
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 122 AVTKQDFGAYKCVSKNSLGDTDGSIKLY----------GKKKKKKKKEKEKKVKKKKE-E 170
T Q+ A V L + I+LY G KK +K +++ +
Sbjct: 322 QATAQEAAAAAAV--RLLNGNEQIIQLYKDLVKLQRHAGIKKAMEKLAAQQEEDAGNQGG 379
Query: 171 GKKKKKKKKKKKKKKKKKVKE 191
G KKK+ +K K+ K KE
Sbjct: 380 GDCKKKQGASEKSKEGGKGKE 400
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association with
pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 26.5 bits (59), Expect = 3.1
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KV++ + ++KKKKKKK KKK K+ + KK
Sbjct: 27 IDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKK 61
>gnl|CDD|215525 PLN02972, PLN02972, Histidyl-tRNA synthetase.
Length = 763
Score = 28.3 bits (63), Expect = 3.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 161 EKKVKKKKEEGKKKKKKKKKKKKK 184
+ + + + E GK KK KK KKKK
Sbjct: 235 KPQAEAENEAGKSDKKDKKSKKKK 258
>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1.
Ig3_Contactin-1: Third Ig domain of the neural cell
adhesion molecule contactin-1. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-1 is
differentially expressed in tumor tissues and may
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 88
Score = 26.9 bits (59), Expect = 3.2
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
P I ++ + A++G +TLEC + P + W K + A I + A
Sbjct: 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAE----ISMSGAV-- 54
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
L I + +D G Y+C ++N G ++Y
Sbjct: 55 ---LKIFNIQPEDEGTYECEAENIKGKDKHQARVY 86
>gnl|CDD|225123 COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC
component [Carbohydrate transport and metabolism].
Length = 472
Score = 28.1 bits (63), Expect = 3.2
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 146 IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+K + + + K+K+ K E K + K VK+
Sbjct: 335 LKTSKTESEDDLEAATAKMKEMKGESKGQSSALAADVKNDLSNVKK 380
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 28.0 bits (62), Expect = 3.3
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 148 LYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+Y K K +K + E K E +KKK+K++ KK K KE+K
Sbjct: 540 IYKKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERK 585
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 27.6 bits (62), Expect = 3.3
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKK 184
++EKEKK KEE K K++K+K ++
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 27.6 bits (62), Expect = 3.3
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 14/57 (24%)
Query: 151 KKKKKKKKEKEKKVKKKK--------------EEGKKKKKKKKKKKKKKKKKVKEKK 193
KK KK KKEK K+ K+ + EE K +K ++ ++ ++++ E+K
Sbjct: 15 KKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQK 71
Score = 26.4 bits (59), Expect = 8.7
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 172 KKKKKKKKKKKKKKKKKVKEKK 193
KKK KK KK+K+K++K+ ++
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
Score = 26.0 bits (58), Expect = 9.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 161 EKKVKKKKEEGKKKKKKKKKKK 182
+KK KK K+E +K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
>gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic
subunit.
Length = 1079
Score = 28.0 bits (62), Expect = 3.5
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 148 LYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
LYG + K K K+ G +KK K KK KKK
Sbjct: 638 LYGYEPPIKPKHKKPGFLSSLCGGSRKKSSKSSKKGSDKKK 678
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 27.8 bits (62), Expect = 3.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
KKKKK+K+K K+ + KK ++KK
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKK 43
Score = 27.8 bits (62), Expect = 4.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKK 185
KKKKKKKK+ K+ + KK ++KK
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKK 43
>gnl|CDD|225324 COG2604, COG2604, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 594
Score = 28.1 bits (63), Expect = 3.6
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
K K K + + + K K +K KK
Sbjct: 453 DKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFI 489
Score = 27.7 bits (62), Expect = 4.8
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
K K K K + +K K +K KK +KE
Sbjct: 453 DKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKE 491
Score = 26.9 bits (60), Expect = 8.7
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
K K K K + +E K +K KK K
Sbjct: 452 LDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIK 490
Score = 26.6 bits (59), Expect = 9.9
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
KL K K K + +E+ K +K KK K+ +
Sbjct: 450 KLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKEFET 494
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 27.7 bits (62), Expect = 3.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 170 EGKKKKKKKKKKKKKKKKKVK 190
+KKK + KKK K KK++
Sbjct: 152 LAEKKKPRSKKKSSKNSKKLR 172
Score = 27.0 bits (60), Expect = 6.8
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 161 EKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
++ +K++ + KKK K KK + V E
Sbjct: 148 RTEILAEKKKPRSKKKSSKNSKKLRIDLVGE 178
>gnl|CDD|220496 pfam09972, DUF2207, Predicted membrane protein (DUF2207). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 503
Score = 28.1 bits (63), Expect = 3.7
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 146 IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
+ KKK K++KKKK++ K K KK +K KK+ K
Sbjct: 337 LNFLFKKKGDDNLFSLKEIKKKKQKSKSFAKAFKKWQKSVKKEADRKGL 385
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 27.9 bits (63), Expect = 3.8
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+++ K+ + + E K+KKK+KKK KKKK K + K
Sbjct: 382 EQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGK 420
Score = 27.1 bits (61), Expect = 6.1
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+++ K+ K + V E+ +KKK+KKK KKKK K +
Sbjct: 382 EQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGK 420
Score = 26.8 bits (60), Expect = 8.8
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 155 KKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+++ ++ K +K+KKK+KKK KKKK KV K
Sbjct: 382 EQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGK 420
>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN). This family
consists of several eukaryotic survival motor neuron
(SMN) proteins. The Survival of Motor Neurons (SMN)
protein, the product of the spinal muscular
atrophy-determining gene, is part of a large
macromolecular complex (SMN complex) that functions in
the assembly of spliceosomal small nuclear
ribonucleoproteins (snRNPs). The SMN complex functions
as a specificity factor essential for the efficient
assembly of Sm proteins on U snRNAs and likely protects
cells from illicit, and potentially deleterious,
non-specific binding of Sm proteins to RNAs.
Length = 264
Score = 27.6 bits (61), Expect = 3.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 165 KKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
++ GKK+K KK + +KK K+W
Sbjct: 40 NDEQNPGKKRKNNKKNRSRKKCNAAPLKEW 69
>gnl|CDD|220267 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein is a
heteromeric structure-specific endonuclease found in
fungi. Slx4 with Slx1 acts as a nuclease on branched DNA
substrates, particularly simple-Y, 5'-flap, or
replication fork structures by cleaving the strand
bearing the 5' non-homologous arm at the branch junction
and thus generating ligatable nicked products from
5'-flap or replication fork substrates.
Length = 627
Score = 28.0 bits (62), Expect = 3.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 140 GDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKK 176
D S + GK+ KKKK K+ K++K+ + KK K
Sbjct: 58 DDQANSGNVSGKRVPKKKKIKKPKLRKRTKRKNKKIK 94
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation of
60S ribosomal subunits.
Length = 132
Score = 26.9 bits (60), Expect = 4.0
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
+ KK K K+K +K E+ K++ + +K++ +K +VK
Sbjct: 26 RSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 26.2 bits (58), Expect = 6.6
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+ K+ KKK + +K +KK K++ + +K++ EK
Sbjct: 26 RSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEK 60
>gnl|CDD|222649 pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family
includes the E. faecalis PcfJ protein, which is
functionally uncharacterized. It is found in bacteria
and viruses, and is typically between 159 and 170 amino
acids in length. There is a conserved HCV sequence
motif.
Length = 169
Score = 27.3 bits (61), Expect = 4.1
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKK 181
K + KK+KEK +K++K+ E +K ++ K K
Sbjct: 37 KYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 28.0 bits (63), Expect = 4.1
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
+K +K ++ VK KKK+K++ ++ K+
Sbjct: 141 EKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKE 177
Score = 27.2 bits (61), Expect = 7.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
EK +K +K G K KKK+K++ E+
Sbjct: 141 EKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLER 174
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 27.5 bits (62), Expect = 4.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKK 184
+ EKEKK KEE K K++K K ++
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
>gnl|CDD|224162 COG1241, MCM2, Predicted ATPase involved in replication control,
Cdc46/Mcm family [DNA replication, recombination, and
repair].
Length = 682
Score = 27.7 bits (62), Expect = 4.2
Identities = 10/49 (20%), Positives = 25/49 (51%)
Query: 146 IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
I + K K K++K +KV +E ++ + ++ ++ + + EK+
Sbjct: 610 IDIIEPGKSKSKRDKIEKVLDIIKELVERSEDPVEEIIEEAEGISEKEV 658
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase.
Length = 448
Score = 27.7 bits (62), Expect = 4.4
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K K KE ++ + +E KK+ +K+ + ++ K + K
Sbjct: 64 AKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAK 104
Score = 27.4 bits (61), Expect = 5.1
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 157 KKEKE-KKVKKKKE---EGKKKKKKKKKKKKKKKKKVKEKK 193
K KE K+K KE E + K+ KK+ +K+ +V+E K
Sbjct: 58 KLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAK 98
>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-2 (also known as
OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-2 (also known as OCAM/mamFas II and
RNCAM). NCAM-2 is organized similarly to NCAM ,
including five N-terminal Ig-like domains and two
fibronectin type III domains. NCAM-2 is differentially
expressed in the developing and mature olfactory
epithelium (OE), and may function like NCAM, as an
adhesion molecule.
Length = 98
Score = 26.5 bits (58), Expect = 4.4
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 54 VPPMIWIQNQLVGAMEGDQMTLECHSEAYP-KSINYWTKENGEIIAQGSKYEPILLDNAY 112
V P I IQ + +E TL C +E P I + +G ++G K D
Sbjct: 1 VQPHI-IQLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKS----PDGRI 55
Query: 113 KIHMK-----LTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
++ + L IK V D G Y C + + +G S+ L
Sbjct: 56 EVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 96
>gnl|CDD|238560 cd01140, FatB, Siderophore binding protein FatB. These proteins
have been shown to function as ABC-type initial
receptors in the siderophore-mediated iron uptake in
some eubacterial species. They belong to the TroA
superfamily of periplasmic metal binding proteins that
share a distinct fold and ligand binding mechanism. A
typical TroA protein is comprised of two globular
subdomains connected by a single helix and can bind
their ligands in the cleft between these domains.
Length = 270
Score = 27.6 bits (62), Expect = 4.4
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 135 SKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
KN L +I+ GK KE++ K+ E + K K KKK
Sbjct: 102 LKNYLESVKQNIETLGKIF-----GKEEEAKELVAEIDASIAEAKSAAKGKKK 149
>gnl|CDD|143270 cd05862, Ig1_VEGFR, First immunoglobulin (Ig)-like domain of
vascular endothelial growth factor (VEGF) receptor(R).
IG1_VEGFR: first immunoglobulin (Ig)-like domain of
vascular endothelial growth factor (VEGF) receptor(R).
The VEGFRs have an extracellular component with seven
Ig-like domains, a transmembrane segment, and an
intracellular tyrosine kinase domain interrupted by a
kinase-insert domain. The VEGFR family consists of three
members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and
VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and
VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds
more weakly. VEGFR-3 appears not to bind VEGF, but binds
other members of the VEGF family (VEGF-C and -D). VEGFRs
bind VEGFs with high affinity with the IG-like domains.
VEGF-A is important to the growth and maintenance of
vascular endothelial cells and to the development of new
blood- and lymphatic-vessels in physiological and
pathological states. VEGFR-2 is a major mediator of the
mitogenic, angiogenic and microvascular
permeability-enhancing effects of VEGF-A. VEGFR-1 may
play an inhibitory part in these processes by binding
VEGF and interfering with its interaction with VEGFR-2.
VEGFR-1 has a signaling role in mediating monocyte
chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and
a survival signal in hematopoietic stem cells or
leukemia cells. VEGFR-3 has been shown to be involved in
tumor angiogenesis and growth.
Length = 86
Score = 26.3 bits (58), Expect = 4.6
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 108 LDNAYKIHMKLTIKAVTKQDFGAYKCVSKN 137
L ++ LTI+ VT D G Y C + +
Sbjct: 42 LQEHTELSSTLTIENVTLSDLGRYTCTASS 71
>gnl|CDD|217479 pfam03297, Ribosomal_S25, S25 ribosomal protein.
Length = 105
Score = 26.6 bits (59), Expect = 4.8
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 155 KKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKK 186
KK+++K K GK KKKK K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 27.3 bits (61), Expect = 4.8
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 145 SIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K+ K++KE+EKK+KK ++ + +++ KK K KKKK VK+K
Sbjct: 178 KKKRKLYKELKERKEREKKLKKVEQRLELQRELMKKGKGKKKKIVKDKD 226
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 27.8 bits (62), Expect = 4.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
+ KK K+ K K + GKKK+ KK K K +
Sbjct: 599 EAKKLAKQLKKKALSDGGKKKQGKKAGGGGKSKAAAE 635
Score = 27.4 bits (61), Expect = 5.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 155 KKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+ KK ++ KK +G KKK+ KK K K E
Sbjct: 599 EAKKLAKQLKKKALSDGGKKKQGKKAGGGGKSKAAAE 635
Score = 27.4 bits (61), Expect = 6.1
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K G + + + + + KK ++ KKK KKK+ KK K
Sbjct: 583 KFAGSQADRAARAEAAEAKKLAKQLKKKALSDGGKKKQGKKAGGGGK 629
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 27.4 bits (61), Expect = 4.8
Identities = 11/59 (18%), Positives = 41/59 (69%)
Query: 135 SKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ +SL + + +++ KK+ ++ + K K+++ K++++++K++KK+++++ +++K
Sbjct: 161 ASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
Score = 27.0 bits (60), Expect = 7.1
Identities = 12/39 (30%), Positives = 30/39 (76%)
Query: 156 KKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
KK K+++ K+++E K++KK+++++++K+K + +KW
Sbjct: 189 LKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKW 227
>gnl|CDD|225913 COG3378, COG3378, Phage associated DNA primase [General function
prediction only].
Length = 517
Score = 27.4 bits (61), Expect = 4.9
Identities = 8/49 (16%), Positives = 18/49 (36%)
Query: 139 LGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
+ ++LY ++ + K GK+ K K +K+ +
Sbjct: 433 TAFDNIVLELYEAYQEWCEANGYVVELSKTRFGKELPTKGVPKGRKRHQ 481
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 27.5 bits (62), Expect = 4.9
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
+ + E+++ KE+ + K+ ++K+KK +K
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEK 540
Score = 27.5 bits (62), Expect = 5.1
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
E+E K++ EG K+ ++K+KK +K ++
Sbjct: 513 EEEIAYIKEQMEGSAPKEPEEKEKKPEKPEIT 544
>gnl|CDD|221673 pfam12626, PolyA_pol_arg_C, Polymerase A arginine-rich C-terminus.
The C-terminus of polymerase A in E coli is
arginine-rich and is necessary for full functioning of
the enzyme.
Length = 123
Score = 26.4 bits (59), Expect = 5.1
Identities = 3/28 (10%), Positives = 17/28 (60%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKKKK 185
+++ ++ + K+++++ +++KK
Sbjct: 96 EQRRAMIEALQGREGGKRRRRRPRRRKK 123
>gnl|CDD|225816 COG3277, GAR1, RNA-binding protein involved in rRNA processing
[Translation, ribosomal structure and biogenesis].
Length = 98
Score = 26.2 bits (58), Expect = 5.1
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 144 GSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
+K + K + + + +KK+K +KK++ KK K
Sbjct: 54 ILVKPDDRDVKLESLVGDTLYIPPDKLIRKKRKLPRKKRRPKKPK 98
>gnl|CDD|143219 cd05742, Ig1_VEGFR_like, First immunoglobulin (Ig)-like domain of
vascular endothelial growth factor (VEGF) receptor (R)
and similar proteins. Ig1_VEGFR_like: first
immunoglobulin (Ig)-like domain of vascular endothelial
growth factor (VEGF) receptor(R) related proteins. The
VEGFRs have an extracellular component with seven
Ig-like domains, a transmembrane segment, and an
intracellular tyrosine kinase domain interrupted by a
kinase-insert domain. The VEGFR family consists of three
members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and
VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and
VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds
more weakly. VEGFR-3 appears not to bind VEGF, but binds
other members of the VEGF family (VEGF-C and -D). VEGFRs
bind VEGFs with high affinity with the IG-like domains.
VEGF-A is important to the growth and maintenance of
vascular endothelial cells and to the development of new
blood- and lymphatic-vessels in physiological and
pathological states. VEGFR-2 is a major mediator of the
mitogenic, angiogenic and microvascular
permeability-enhancing effects of VEGF-A. VEGFR-1 may
play an inhibitory part in these processes by binding
VEGF and interfering with its interaction with VEGFR-2.
VEGFR-1 has a signaling role in mediating monocyte
chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and
a survival signal in hematopoietic stem cells or
leukemia cells. VEGFR-3 has been shown to be involved in
tumor angiogenesis and growth. This group also contains
alpha-type platelet-derived growth factor receptor
precursor (PDGFR)-alpha (CD140a), and PDGFR-beta
(CD140b). PDGFRs alpha and beta have an extracellular
component with five Ig-like domains, a transmembrane
segment, and a cytoplasmic portion that has protein
tyrosine kinase activity.
Length = 84
Score = 26.2 bits (58), Expect = 5.1
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 107 LLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGD 141
L A ++ LTI T +D G Y C + + D
Sbjct: 40 SLSEATELSSTLTIPNATLKDSGTYTCAASSGTMD 74
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 27.5 bits (61), Expect = 5.2
Identities = 8/50 (16%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKK----KKKKKKKKKKKKKVKEK 192
K K+ +K++ E+++ ++ + + + ++ K KKK + +
Sbjct: 344 KARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDA 393
>gnl|CDD|199876 cd06909, M14_ASPA, Peptidase M14 Aspartoacylase (ASPA) subfamily.
Aspartoacylase (ASPA) belongs to the Succinylglutamate
desuccinylase/aspartoacylase subfamily of the M14 family
of metallocarboxypeptidases. ASPA (also known as
aminoacylase 2; EC:3.5.1.15) cleaves N-acetyl L-aspartic
acid (NAA) into aspartate and acetate. NAA is abundant
in the brain, and hydrolysis of NAA by ASPA may help
maintain white matter. ASPA is an NAA scavenger in other
tissues. Mutations in the gene encoding ASPA cause
Canavan disease (CD), a fatal progressive
neurodegenerative disorder involving dysmyelination and
spongiform degeneration of white matter in children.
This enzyme binds zinc which is necessary for activity.
Measurement of elevated NAA levels in urine is used in
the diagnosis of CD.
Length = 282
Score = 27.2 bits (61), Expect = 5.2
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 23 EGDQMTLECHSEAYPKSINYWTKENGEIIAQVPPMIWIQN-QLV--GA-----MEGDQMT 74
++ + H E S++Y ENGEI A V P + ++ Q + G +G+ +
Sbjct: 198 PPCELDVYRHLE----SVDYPRDENGEIAAMVHPQLQDRDWQPLKPGDPLFLTFDGETIP 253
Query: 75 LECHSEAYPKSIN---YWTK 91
E S YP IN Y+ K
Sbjct: 254 YEGDSTVYPVFINEAAYYEK 273
>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine
triphosphatases (GTPases). The Ras2 subfamily, found
exclusively in fungi, was first identified in Ustilago
maydis. In U. maydis, Ras2 is regulated by Sql2, a
protein that is homologous to GEFs (guanine nucleotide
exchange factors) of the CDC25 family. Ras2 has been
shown to induce filamentous growth, but the signaling
cascade through which Ras2 and Sql2 regulate cell
morphology is not known. Most Ras proteins contain a
lipid modification site at the C-terminus, with a
typical sequence motif CaaX, where a = an aliphatic
amino acid and X = any amino acid. Lipid binding is
essential for membrane attachment, a key feature of most
Ras proteins.
Length = 190
Score = 27.1 bits (60), Expect = 5.2
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 162 KKVKKKKEEGKKKKKKKKKKKKKKKKK 188
+ ++++++ G+ K KKK+KKK+K
Sbjct: 160 RALRQQRQGGQGPKGGPTKKKEKKKRK 186
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 27.3 bits (61), Expect = 5.2
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ K+ E K++ K K + K K ++ KK+ K+ K+++ E
Sbjct: 50 QAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELS 89
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this family
(Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 26.1 bits (58), Expect = 5.3
Identities = 13/37 (35%), Positives = 28/37 (75%), Gaps = 2/37 (5%)
Query: 155 KKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
K++KE+EK +++EE K+ K K+++ ++K +K+K+
Sbjct: 1 KERKEEEKA--QREEELKRLKNLKREEIEEKLEKIKK 35
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 27.3 bits (61), Expect = 5.5
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 170 EGKKKKKKKKKKKKKKKKKVKEKK 193
+KKK++KK+++K+ KE +
Sbjct: 176 GHSSDSEKKKQRKKQRRKRSKELR 199
>gnl|CDD|223962 COG1031, COG1031, Uncharacterized Fe-S oxidoreductase [Energy
production and conversion].
Length = 560
Score = 27.3 bits (61), Expect = 5.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 169 EEGKKKKKKKKKKKKKKKKKVKE 191
E GKKK +K KK K+KV+E
Sbjct: 413 ERGKKKAEKHKKLFAAFKRKVRE 435
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 27.5 bits (61), Expect = 5.8
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 136 KNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKK 186
KN L + + K KK K KK KK ++ + K+ K +++ +
Sbjct: 126 KNVLESIMEGLDKILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESE 176
>gnl|CDD|179392 PRK02249, PRK02249, DNA primase large subunit; Validated.
Length = 343
Score = 27.2 bits (61), Expect = 5.8
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 133 CVSKNSLGDTDGSIK---LYGKKKKKKKKEKEKKVKKKKEE 170
CV K+ L + +K Y ++K + K ++EK+ +++E+
Sbjct: 306 CVGKDDLCE---KVKHPLSYYRRKLRDKDKEEKEDWREEEK 343
>gnl|CDD|236413 PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated.
Length = 367
Score = 27.3 bits (61), Expect = 5.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKK 175
K KKK+ E+ VK+ E+GKK+
Sbjct: 2 KTKKKETTTLEQVVKELIEKGKKRG 26
>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor (VEGFR).
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor (VEGFR). The
VEGFRs have an extracellular component with seven
Ig-like domains, a transmembrane segment, and an
intracellular tyrosine kinase domain interrupted by a
kinase-insert domain. The VEGFR family consists of three
members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and
VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at
the Ig-like domains. VEGF-A is important to the growth
and maintenance of vascular endothelial cells and to the
development of new blood- and lymphatic-vessels in
physiological and pathological states. VEGFR-2 is a
major mediator of the mitogenic, angiogenic and
microvascular permeability-enhancing effects of VEGF-A.
VEGFR-1 may play an inhibitory part in these processes
by binding VEGF and interfering with its interaction
with VEGFR-2. VEGFR-1 has a signaling role in mediating
monocyte chemotaxis. VEGFR-2 and -1 may mediate a
chemotactic and a survival signal in hematopoietic stem
cells or leukemia cells. VEGFR-3 has been shown to be
involved in tumor angiogenesis and growth.
Length = 71
Score = 25.4 bits (56), Expect = 5.9
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 81 AYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139
AYP W K NG++I++ ++ K LTIK VT++D G Y V N
Sbjct: 9 AYPPPEIQWYK-NGKLISEKNRT--------KKSGHSLTIKDVTEEDAGNYTVVLTNKQ 58
>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is
involved in recombination. Rap (recombination adept with
plasmid) increases lambda-by-plasmid recombination
catalyzed by Escherichia coli's RecBCD pathway.
Length = 188
Score = 26.9 bits (60), Expect = 6.3
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
K++K +EKK K + + +++ K +K+K K + +KE
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLKE 71
>gnl|CDD|217483 pfam03305, Lipoprotein_X, Mycoplasma MG185/MG260 protein. Most of
the aligned regions in this family are found towards the
middle of the member proteins.
Length = 237
Score = 27.0 bits (60), Expect = 6.7
Identities = 20/78 (25%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 120 IKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKK 179
+KA TK + S S G+ L GK K +VK KE K + +
Sbjct: 155 LKAPTKNNQKGGALGSVTSKGNA----NLLGKFTLDKNSLTSPEVKAFKEADKSEDPQTD 210
Query: 180 KKK----KKKKKKVKEKK 193
K K K K
Sbjct: 211 SKTIELYKDKIPTDKNAG 228
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 26.7 bits (59), Expect = 6.7
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+ KK +K+K +KK+ KK KKKKK+K++ + +E
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEE 84
>gnl|CDD|240306 PTZ00178, PTZ00178, 60S ribosomal protein L17; Provisional.
Length = 181
Score = 26.6 bits (59), Expect = 6.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKK 183
EK++ V K KE KK+ KK+ + K
Sbjct: 151 TEKDETVPKPKEAPKKQTKKQLARSK 176
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 27.1 bits (61), Expect = 6.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
K K+ K+ K +KK E + KK K ++K K+++K
Sbjct: 225 KALAKQYKKLRKAQEKKVEGRLAQHKKYAKLREKLKEELKS 265
>gnl|CDD|234048 TIGR02887, spore_ger_x_C, germination protein, Ger(x)C family.
Members of this protein family are restricted to
endospore-forming members of the Firmicutes lineage of
bacteria, including the genera Bacillus, Clostridium,
Thermoanaerobacter, Carboxydothermus, etc. Members are
nearly all predicted lipoproteins and belong to probable
transport operons, some of which have been characterized
as crucial to germination in response to alanine.
Members typically have been gene symbols gerKC, gerAC,
gerYC, etc [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Sporulation and
germination].
Length = 371
Score = 26.8 bits (60), Expect = 7.1
Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 33/142 (23%)
Query: 64 LVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAV 123
L G ++G +T++ S+ ++ EI+ +K + + + + ++
Sbjct: 228 LTGKVKGGVLTVKLPSDGDFITL--------EILKSKTKIKIKVKGGKPHFKIHIKLEGR 279
Query: 124 TKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKK-KKEKEKKVKKKKEEGKKKKKKKK--- 179
+ D L K KK +KE EK+++K+ E+ KK +K K
Sbjct: 280 ITESQ--------------DPKENLEKPKNLKKIEKEAEKEIEKEIEQLIKKLQKYKIDP 325
Query: 180 -------KKKKKKKKKVKEKKW 194
+K K K +K W
Sbjct: 326 LGLGDELYRKHPKLWKKVKKNW 347
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 27.1 bits (60), Expect = 7.3
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K + K K +K+ + KKK K+KK+ KE
Sbjct: 195 KTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEAS 236
>gnl|CDD|192718 pfam11176, DUF2962, Protein of unknown function (DUF2962). This
eukaryotic family of proteins has no known function.
Length = 155
Score = 26.4 bits (59), Expect = 7.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
KKKK K +K K+ + K +KKK ++ +K+ E
Sbjct: 7 AKKKKVLHPKSRKAKQLNRATLRDDKLEKKKAERAEKRSLE 47
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 27.0 bits (60), Expect = 7.3
Identities = 9/41 (21%), Positives = 25/41 (60%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+ ++K + +K+K++ + K K++K++ + +K+ KE
Sbjct: 341 ENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 27.0 bits (60), Expect = 7.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKK 179
K K KKK++K+K+ E K+KKK+K
Sbjct: 11 QKDKNKKKEKKKKESPPPPHEIKRKKKRKG 40
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 26.1 bits (58), Expect = 7.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K+K + EKK ++KK E +K K ++K + + + EK+
Sbjct: 15 KAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKE 57
>gnl|CDD|227818 COG5531, COG5531, SWIB-domain-containing proteins implicated in
chromatin remodeling [Chromatin structure and dynamics].
Length = 237
Score = 26.6 bits (59), Expect = 7.7
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 141 DTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
T G L K++ K+ + EGK+ KKKK K EK
Sbjct: 75 KTTGKNDL--PKEEDSSLPSSKETENGDTEGKETDKKKKSSTISKNSPSGEK 124
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 26.2 bits (58), Expect = 7.9
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 5/49 (10%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKK-----KKKKKVKEKK 193
G+KK K+K ++K KK+E K+K+K+++ K K++ ++++KK
Sbjct: 64 GRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKK 112
>gnl|CDD|240334 PTZ00258, PTZ00258, GTP-binding protein; Provisional.
Length = 390
Score = 26.8 bits (60), Expect = 7.9
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 163 KVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
V+K+ +E KK+KKKKKKK++K + KK
Sbjct: 158 FVEKRLDELTKKRKKKKKKKEEKVELDVLKKV 189
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 26.9 bits (59), Expect = 7.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 149 YGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKK 184
K K+K KEK KK+ K+ K+ +K K
Sbjct: 216 NNTNDKNKEKNKEKDKNIKKDRDGDKQTKRNSEKSK 251
>gnl|CDD|130187 TIGR01117, mmdA, methylmalonyl-CoA decarboxylase alpha subunit.
This model describes methymalonyl-CoA decarboxylase
aplha subunit in archaea and bacteria. Metylmalonyl-CoA
decarboxylase Na+ pump is a representative of a class of
Na+ transport decarboxylases that couples the energy
derived by decarboxylation of carboxylic acid substrates
to drive the extrusion of Na+ ion across the membrane
[Energy metabolism, ATP-proton motive force
interconversion, Energy metabolism, Fermentation,
Transport and binding proteins, Cations and iron
carrying compounds].
Length = 512
Score = 26.7 bits (59), Expect = 8.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 148 LYGKKKKKKKKEKEKKVKKKKEEGK 172
L+ KK+K K+ EK+++K+ +GK
Sbjct: 6 LHEKKEKIKQGGGEKRIEKQHAQGK 30
>gnl|CDD|227238 COG4901, COG4901, Ribosomal protein S25 [Translation, ribosomal
structure and biogenesis].
Length = 107
Score = 26.0 bits (57), Expect = 8.1
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
K + KEKK +K K K KKK KKKKK++ +
Sbjct: 1 MAPKSQLSKEKKAEKAKAGTAKDKKKWSKKKKKEEAR 37
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 27.0 bits (60), Expect = 8.1
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
+ K +EK + + + ++ K+ K+ + K K
Sbjct: 904 LSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDKHKG 942
>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component
Toc86/159, G and M domains. The long precursor of the
86K protein originally described is proposed to have
three domains. The N-terminal A-domain is acidic,
repetitive, weakly conserved, readily removed by
proteolysis during chloroplast isolation, and not
required for protein translocation. The other domains
are designated G (GTPase) and M (membrane anchor); this
family includes most of the G domain and all of M
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 763
Score = 26.8 bits (59), Expect = 8.3
Identities = 12/45 (26%), Positives = 27/45 (60%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
KL +++K +E + +VK +++ +++ K+ K KK K++ E
Sbjct: 423 KLSKEQRKAYLEEYDYRVKLLQKKQWREELKRMKMMKKFGKEIGE 467
>gnl|CDD|217996 pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced
periplasmic protein. The recent structure of a member of
this family shows that it binds to polyisoprenoid. The
structure consists of an extended, eight-stranded,
antiparallel beta-barrel that resembles the lipocalin
fold.
Length = 161
Score = 26.1 bits (58), Expect = 8.3
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 89 WTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTK 125
+ + +K E + LT+ VTK
Sbjct: 71 DVAKYPTATFKSTKVEATGGPGTVTVSGDLTLHGVTK 107
>gnl|CDD|143167 cd00099, IgV, Immunoglobulin variable domain (IgV). IgV:
Immunoglobulin variable domain (IgV). Members of the IgV
family are components of immunoglobulin (Ig) and T cell
receptors. The basic structure of Ig molecules is a
tetramer of two light chains and two heavy chains linked
by disulfide bonds. In Ig, each chain is composed of one
variable domain (IgV) and one or more constant domains
(IgC); these names reflect the fact that the variability
in sequences is higher in the variable domain than in
the constant domain. Within the variable domain, there
are regions of even more variability called the
hypervariable or complementarity-determining regions
(CDRs) which are responsible for antigen binding. A
predominant feature of most Ig domains is the disulfide
bridge connecting 2 beta-sheets with a tryptophan
residue packed against the disulfide bond.
Length = 105
Score = 25.7 bits (57), Expect = 8.5
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 86 INYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGS 145
I + + ++ + LTI ++ +D Y C + G+
Sbjct: 39 IYISSNGSQYAGGVKGRFSGTRDSSKSSFT--LTISSLQPEDSAVYYCAV----SLSGGT 92
Query: 146 IKLY 149
KLY
Sbjct: 93 YKLY 96
>gnl|CDD|146145 pfam03357, Snf7, Snf7. This family of proteins are involved in
protein sorting and transport from the endosome to the
vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes
play an important role in the degradation of both lipids
and cellular proteins. In order to perform this
degradative function, vacuoles/lysosomes contain
numerous hydrolases which have been transported in the
form of inactive precursors via the biosynthetic pathway
and are proteolytically activated upon delivery to the
vacuole/lysosome. The delivery of transmembrane
proteins, such as activated cell surface receptors to
the lumen of the vacuole/lysosome, either for
degradation/downregulation, or in the case of
hydrolases, for proper localisation, requires the
formation of multivesicular bodies (MVBs). These late
endosomal structures are formed by invaginating and
budding of the limiting membrane into the lumen of the
compartment. During this process, a subset of the
endosomal membrane proteins is sorted into the forming
vesicles. Mature MVBs fuse with the vacuole/lysosome,
thereby releasing cargo containing vesicles into its
hydrolytic lumen for degradation. Endosomal proteins
that are not sorted into the intralumenal MVB vesicles
are either recycled back to the plasma membrane or Golgi
complex, or remain in the limiting membrane of the MVB
and are thereby transported to the limiting membrane of
the vacuole/lysosome as a consequence of fusion.
Therefore, the MVB sorting pathway plays a critical role
in the decision between recycling and degradation of
membrane proteins. A few archaeal sequences are also
present within this family.
Length = 169
Score = 26.4 bits (59), Expect = 8.6
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKK---KKKKVKEK 192
KK++ EKK+KK + E KK KK K K+KK EK
Sbjct: 14 DKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEK 55
>gnl|CDD|180892 PRK07220, PRK07220, DNA topoisomerase I; Validated.
Length = 740
Score = 27.0 bits (60), Expect = 8.9
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
+KK+K+EK ++ KK+K + K K KK +K +
Sbjct: 669 QKKQKEEKAQQPKKEKPKSIKDIKGIGKKTAEKLE 703
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 26.1 bits (58), Expect = 8.9
Identities = 8/39 (20%), Positives = 23/39 (58%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
KK+ ++ E+ + +EE ++ K+ + + + +K++ E
Sbjct: 82 KKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALE 120
>gnl|CDD|220633 pfam10214, Rrn6, RNA polymerase I-specific transcription-initiation
factor. RNA polymerase I-specific
transcription-initiation factor Rrn6 and Rrn7 represent
components of a multisubunit transcription factor
essential for the initiation of rDNA transcription by
Pol I. These proteins are found in fungi.
Length = 753
Score = 26.6 bits (59), Expect = 9.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 171 GKKKKKKKKKKKKKK 185
G + KKKKKKK+K
Sbjct: 736 GGRSASKKKKKKKRK 750
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 26.9 bits (59), Expect = 9.1
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 118 LTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKK 177
TI VT GA + S KK+++K+K+ EK+ + K EE K K
Sbjct: 38 YTIAGVTVVATGAGVVYYQRKGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPK 97
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 26.9 bits (59), Expect = 9.2
Identities = 16/48 (33%), Positives = 32/48 (66%)
Query: 146 IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+KL K++++ K E K ++K ++ +K K+ +K+ KK +K+ KEK+
Sbjct: 289 LKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKE 336
>gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII. Eukaryotic DNA topoisomerase
II, GyrB, ParE.
Length = 594
Score = 26.8 bits (60), Expect = 9.4
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ E K V+K K + KK ++ +KKK+
Sbjct: 326 LEENPVEASKIVEKVLLAAKARAAAKKARELTRKKKLSSIS 366
>gnl|CDD|225651 COG3109, ProQ, Activator of osmoprotectant transporter ProP [Signal
transduction mechanisms].
Length = 208
Score = 26.4 bits (58), Expect = 9.6
Identities = 7/39 (17%), Positives = 19/39 (48%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
+ +++ KK +E +K ++ + K K +++V
Sbjct: 114 RAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREEV 152
>gnl|CDD|217935 pfam04158, Sof1, Sof1-like domain. Sof1 is essential for cell
growth and is a component of the nucleolar rRNA
processing machinery.
Length = 88
Score = 25.3 bits (56), Expect = 9.6
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKK--KKKKKKKKKKKKKKV 189
KK +K K + K+ KK+KEE ++K K K ++KK V
Sbjct: 48 KKAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKHV 87
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 26.3 bits (58), Expect = 9.8
Identities = 8/35 (22%), Positives = 23/35 (65%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+ EKE++ +++ K++++++ K+K K+ + E
Sbjct: 152 EFEKEEEEQRRLLLQKEEEEQQMNKRKNKQALLDE 186
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 26.4 bits (58), Expect = 10.0
Identities = 12/50 (24%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 138 SLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
S +D + + K+K+K + + +K KE+ +KK+++K++ + K+
Sbjct: 151 SRKKSDDEHR--KRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRP 198
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.127 0.370
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,532,402
Number of extensions: 904216
Number of successful extensions: 17883
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10773
Number of HSP's successfully gapped: 2419
Length of query: 194
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 102
Effective length of database: 6,857,034
Effective search space: 699417468
Effective search space used: 699417468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (25.5 bits)