RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16426
(194 letters)
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 108 bits (270), Expect = 6e-29
Identities = 35/192 (18%), Positives = 59/192 (30%), Gaps = 53/192 (27%)
Query: 7 NVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIA-------------- 52
M EG+ + C + W + ++I
Sbjct: 98 FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 157
Query: 53 ----------------------------------QVPPMIWIQNQLVG--AMEGDQMTLE 76
VPP + + +V A G +TL
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLV 217
Query: 77 CHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSK 136
C ++ +P+ WTK+ I + E + + +LTI+ V K D Y C+++
Sbjct: 218 CDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD---SSELTIRNVDKNDEAEYVCIAE 274
Query: 137 NSLGDTDGSIKL 148
N G+ D SI L
Sbjct: 275 NKAGEQDASIHL 286
Score = 67.6 bits (165), Expect = 5e-14
Identities = 23/188 (12%), Positives = 41/188 (21%), Gaps = 58/188 (30%)
Query: 10 PMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY-WTKENGEIIA---------------- 52
+ I G+ C K + W NGE ++
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 53 -----------------------------------QVPPMIWIQNQLVGAMEGDQMTLEC 77
M EG+ + C
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 78 HSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKN 137
+ W + ++I + +L +N L I+ + K D G Y+C +
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY------LQIRGIKKTDEGTYRCEGRI 176
Query: 138 SLGDTDGS 145
Sbjct: 177 LARGEINF 184
Score = 56.0 bits (135), Expect = 6e-10
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY-WTKENGEIIAQGSKYEPILLDNA 111
+V + I G+ C K + W NGE ++ + ++ ++
Sbjct: 1 RVLQ-VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
LTI D G YKCV G
Sbjct: 60 D--SSTLTIYNANIDDAGIYKCVVTAEDG 86
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 94.6 bits (235), Expect = 2e-24
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Query: 47 NGEIIAQVPPMIWIQNQLVGAMEGDQMTLEC-HSEAYPKSINYWTKENGEIIAQGSKYEP 105
++I VPP N A G++ L C + P S W K +G ++ K
Sbjct: 99 KVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFK-DGIVMPTNPKSTR 157
Query: 106 ILLDNAYKIH---MKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+++Y ++ +L ++ D G Y C ++N G S +
Sbjct: 158 AFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 203
Score = 59.6 bits (144), Expect = 2e-11
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 3/101 (2%)
Query: 52 AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNA 111
A + V E + + L C + W + G+ I
Sbjct: 1 AMGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYE 60
Query: 112 YKIHMK---LTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
++ +T K+VT++D G Y C+ G++ G +K+
Sbjct: 61 DRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVK 101
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 86.2 bits (213), Expect = 9e-21
Identities = 26/194 (13%), Positives = 49/194 (25%), Gaps = 54/194 (27%)
Query: 7 NVPPMIWIQ-NQLVGAMEGDQMTLECHSEAYPKSINY-WTKENGEII------------- 51
P W Q V E L C + G +
Sbjct: 86 KDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG 145
Query: 52 -------------------------------------AQVPPMIWIQNQLVGAMEGDQMT 74
PP + + + + G+
Sbjct: 146 FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQ 205
Query: 75 LECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCV 134
+ C + + + + + + N +A + + +N Y+ + L + V Q G Y CV
Sbjct: 206 IVCSASSVDVNFDVFLQHNNTKLAIPQQSD--FHNNRYQKVLTLNLDQVDFQHAGNYSCV 263
Query: 135 SKNSLGDTDGSIKL 148
+ N G S+
Sbjct: 264 ASNVQGKHSTSMFF 277
Score = 57.7 bits (139), Expect = 2e-10
Identities = 20/180 (11%), Positives = 31/180 (17%), Gaps = 55/180 (30%)
Query: 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIA--------------- 52
P+I + G +TL C + W
Sbjct: 3 SIPVIEPSVPELVVKPGATVTLRCVGNGSVE----WDGPPSPHWTLYSDGSSSILSTNNA 58
Query: 53 ---------------------------QVPPMIWIQ-NQLVGAMEGDQMTLECHSEAYPK 84
+ P W Q V E L C
Sbjct: 59 TFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVL 118
Query: 85 SINY-WTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTD 143
+ G + + + Y TI Y+C +
Sbjct: 119 EAGVSLVRVRGRPLMRHTNY--SFSPWHG-----FTIHRAKFIQSQDYQCSALMGGRKVM 171
Score = 55.7 bits (134), Expect = 9e-10
Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 14/98 (14%)
Query: 52 AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNA 111
A P+I + G +TL C + W S D +
Sbjct: 1 AGSIPVIEPSVPELVVKPGATVTLRCVGNGSVE----WDGPPSPHWTLYS-------DGS 49
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
I L+ T Q+ G Y+C +I LY
Sbjct: 50 SSI---LSTNNATFQNTGTYRCTEPGDPLGGSAAIHLY 84
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 84.2 bits (208), Expect = 1e-20
Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 4/105 (3%)
Query: 49 EIIAQVPPMIWIQNQLVGAMEGDQMTLECHS-EAYPKSINYWTKENGEIIAQGSKYEPIL 107
+ VPP + G++ L C + P S W K+ ++ +K
Sbjct: 98 HLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAF 157
Query: 108 LDNAYKIHMK---LTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
+++++ I K L VT D G Y C ++N G S +
Sbjct: 158 MNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 202
Score = 58.4 bits (141), Expect = 6e-11
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 3/97 (3%)
Query: 56 PMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIH 115
++ V E + + L C + W G A I A ++
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 116 MK---LTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
+T +VT++D G Y C+ G G + ++
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH 98
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 85.2 bits (210), Expect = 2e-20
Identities = 29/196 (14%), Positives = 54/196 (27%), Gaps = 54/196 (27%)
Query: 7 NVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEII--------------- 51
P +++ + E + C S + +G+ +
Sbjct: 89 RDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGIT 148
Query: 52 ------------------------------------AQVPPMIWIQNQLVGAMEGDQMTL 75
+ P++ + +GD T+
Sbjct: 149 IKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTV 208
Query: 76 ECHSEAYPKSINY-WTKENGEI--IAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYK 132
C + S+N W K N + IAQ D Y+ LTI + D G +
Sbjct: 209 VCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFM 268
Query: 133 CVSKNSLGDTDGSIKL 148
C + N+ G + + L
Sbjct: 269 CYANNTFGSANVTTTL 284
Score = 57.8 bits (139), Expect = 2e-10
Identities = 16/173 (9%), Positives = 37/173 (21%), Gaps = 41/173 (23%)
Query: 5 GQNVPPMIWIQNQLVGAMEGDQMTLECHSEA-----YPKS-------------INYWTKE 46
G+ PP I + GD ++L C +
Sbjct: 8 GEPSPPSIHPAQSELIVEAGDTLSLTCIDPDFVRWTFKTYFNEMVENKKNEWIQEKAEAT 67
Query: 47 NG---------------EIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTK 91
+ + P +++ + E + C S +
Sbjct: 68 RTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIE 127
Query: 92 ENGEIIAQGSKYEPILLDNAYKIHMKLTI-KAVTKQDFGAYKCVSKNSLGDTD 143
+G+ + + +TI +C ++
Sbjct: 128 CDGKSLPTDLTFV-------PNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLH 173
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 79.3 bits (195), Expect = 5e-19
Identities = 29/171 (16%), Positives = 50/171 (29%), Gaps = 44/171 (25%)
Query: 21 AMEGDQMTLECHSEAYPKSI--NYWTKENGEIIA-------------------------- 52
G ++ L C + + W K G ++
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLK-GGVVLKEDALPGQKTEFKVDSDDQWGEYSCVF 68
Query: 53 ------------QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY-WTKENGEI-IA 98
PP + EG+ L C SE+ P ++ W K A
Sbjct: 69 LPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKA 128
Query: 99 QGSKYEPILLDNAYKIHMKLTIKAVT-KQDFGAYKCVSKNSLGDTDGSIKL 148
+ E ++ + +L I+ + + D G Y+C +S G I L
Sbjct: 129 LMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 179
Score = 46.9 bits (111), Expect = 5e-07
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 15/97 (15%)
Query: 67 AMEGDQMTLECHSEAYPKSI--NYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVT 124
G ++ L C + + W K G +L K K +
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLK-GGV-----------VLKEDALPGQKTEFKVDS 57
Query: 125 KQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKE 161
+G Y CV T +I+L+G + K K E
Sbjct: 58 DDQWGEYSCVFLPEPMGT-ANIQLHGPPRVKAVKSSE 93
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 79.4 bits (195), Expect = 4e-18
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 12/99 (12%)
Query: 53 QVPPMIWIQNQLVG-AMEGDQMTLECHSEAYPKSINY-WTKENGEIIAQGSKYEPILLDN 110
Q P + I+ ++ + L C ++A P + Y WT NG + L
Sbjct: 229 QYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLF-- 286
Query: 111 AYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
+ G Y C + N +G G +++
Sbjct: 287 --------FKGPINYSLAGTYICEATNPIGTRSGQVEVN 317
Score = 48.6 bits (115), Expect = 2e-07
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 7 NVPPMIWIQNQLVG-AMEGDQMTLECHSEAYPKSINY-WTKENGEIIA 52
P + I+ ++ + L C ++A P + Y WT NG +
Sbjct: 229 QYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPK 276
Score = 48.6 bits (115), Expect = 3e-07
Identities = 17/119 (14%), Positives = 39/119 (32%), Gaps = 18/119 (15%)
Query: 48 GEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSIN----YWTKENGEI---IAQG 100
G+ + + P + N + G + L C S+ W K +A
Sbjct: 7 GQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIY 66
Query: 101 SKYEPILLDNAYKIHMK----------LTIKAVTKQDFGAYKC-VSKNSLGDTDGSIKL 148
+ + + Y+ ++ + + + +D G Y C + G+ + + L
Sbjct: 67 NPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNL 125
Score = 44.7 bits (105), Expect = 5e-06
Identities = 18/138 (13%), Positives = 36/138 (26%), Gaps = 12/138 (8%)
Query: 17 QLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQ-----LVGAMEGD 71
+L D+ C +P + N ++ N ++ P WI+ +
Sbjct: 95 RLSRLELEDEGVYICEFATFP-TGNRESQLNLTVM--AKPTNWIEGTQAVLRAKKGQDDK 151
Query: 72 QMTLECHS-EAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGA 130
+ C S P S+ W P + + +
Sbjct: 152 VLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISR---YRLVPSREAHQQS 208
Query: 131 YKCVSKNSLGDTDGSIKL 148
C+ + S+ L
Sbjct: 209 LACIVNYHMDRFKESLTL 226
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 80.0 bits (197), Expect = 6e-18
Identities = 30/174 (17%), Positives = 46/174 (26%), Gaps = 52/174 (29%)
Query: 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY-WTKENGEII---------------- 51
P I G ++L CH+ + P Y W +G I
Sbjct: 381 PDDPTISPSYTYYRPGVNLSLSCHAASNPP-AQYSWLI-DGNIQQHTQELFISNITEKNS 438
Query: 52 -------------------------AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSI 86
A++P N + D + C EA +
Sbjct: 439 GLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTY 498
Query: 87 NYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
W + + N LT+ VT+ D AY C +NS+
Sbjct: 499 -LWWVNGQSLPVSPRLQ--LSNGNRT-----LTLFNVTRNDARAYVCGIQNSVS 544
Score = 72.7 bits (178), Expect = 2e-15
Identities = 28/188 (14%), Positives = 40/188 (21%), Gaps = 64/188 (34%)
Query: 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI----------------I 51
+P N + D + C EA + W + +
Sbjct: 466 LPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTY-LWWVNGQSLPVSPRLQLSNGNRTLTL 524
Query: 52 AQV-------------------------------PPMIWIQNQLVGAMEGDQMTLECHSE 80
V P I + G + L CHS
Sbjct: 525 FNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSA 584
Query: 81 AYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
+ P W NG L I +T + G Y C N
Sbjct: 585 SNPSPQYSWRI-NGIPQQHTQV---------------LFIAKITPNNNGTYACFVSNLAT 628
Query: 141 DTDGSIKL 148
+ SI
Sbjct: 629 GRNNSIVK 636
Score = 68.8 bits (168), Expect = 4e-14
Identities = 32/176 (18%), Positives = 52/176 (29%), Gaps = 52/176 (29%)
Query: 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI--------IAQV------ 54
P I G+ + L CH+ + P + W NG I +
Sbjct: 203 PDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFV-NGTFQQSTQELFIPNITVNNSG 261
Query: 55 ----------------------------PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSI 86
P I N + D + L C E +
Sbjct: 262 SYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNP-VEDEDAVALTCEPEIQNTTY 320
Query: 87 NYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDT 142
+W N + + + + + DN LT+ +VT+ D G Y+C +N L
Sbjct: 321 LWWV--NNQSLPVSPRLQ-LSNDNR-----TLTLLSVTRNDVGPYECGIQNELSVD 368
Score = 65.4 bits (159), Expect = 6e-13
Identities = 29/188 (15%), Positives = 46/188 (24%), Gaps = 67/188 (35%)
Query: 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI----------------IA 52
P I N + D + L C E + W N + +
Sbjct: 290 KPFITSNNSNP-VEDEDAVALTCEPEIQNTTY-LWWVNNQSLPVSPRLQLSNDNRTLTLL 347
Query: 53 QV-------------------------------PPMIWIQNQLVGAMEGDQMTLECHSEA 81
V P I G ++L CH+ +
Sbjct: 348 SVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAAS 407
Query: 82 YPKSINY-WTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
P Y W +G I + L I +T+++ G Y C + NS
Sbjct: 408 NPP-AQYSWLI-DGNIQQHTQE---------------LFISNITEKNSGLYTCQANNSAS 450
Query: 141 DTDGSIKL 148
+
Sbjct: 451 GHSRTTVK 458
Score = 65.4 bits (159), Expect = 7e-13
Identities = 25/189 (13%), Positives = 43/189 (22%), Gaps = 64/189 (33%)
Query: 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI----------------- 50
+P N + D + C E + W N +
Sbjct: 110 LPKPSISSNNSKPVEDKDAVAFTCEPETQDATY-LWWVNNQSLPVSPRLQLSNGNRTLTL 168
Query: 51 ------------------------------IAQVPPMIWIQNQLVGAMEGDQMTLECHSE 80
+ P I G+ + L CH+
Sbjct: 169 FNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAA 228
Query: 81 AYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
+ P + W NG + L I +T + G+Y C + NS
Sbjct: 229 SNPPAQYSWFV-NGTFQQSTQE---------------LFIPNITVNNSGSYTCQAHNSDT 272
Query: 141 DTDGSIKLY 149
+ +
Sbjct: 273 GLNRTTVTT 281
Score = 58.0 bits (140), Expect = 2e-10
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 50 IIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLD 109
+ ++P N + D + C E + W N + + + + +
Sbjct: 106 VYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATY-LWWV-NNQSLPVSPRLQ-LSNG 162
Query: 110 NAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
N LT+ VT+ D +YKC ++N +
Sbjct: 163 NR-----TLTLFNVTRNDTASYKCETQNPVS 188
Score = 46.1 bits (109), Expect = 3e-06
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 11/90 (12%)
Query: 67 AMEGDQMTLECHSEAYPKSINYWTK-----ENGEIIAQGSKYEPILLDNAYKIHMK---- 117
EG ++ L H+ W K N +II + AY
Sbjct: 11 VAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPN 70
Query: 118 --LTIKAVTKQDFGAYKCVSKNSLGDTDGS 145
L I+ + + D G Y S + +
Sbjct: 71 ASLLIQNIIQNDTGFYTLHVIKSDLVNEEA 100
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 72.9 bits (179), Expect = 1e-16
Identities = 35/185 (18%), Positives = 59/185 (31%), Gaps = 61/185 (32%)
Query: 15 QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI------------------------ 50
Q +G+ + C + P W N E+
Sbjct: 10 SPQEF--KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKS 67
Query: 51 ------------------------IAQVPPMIWIQNQL--VGAMEGDQMTLECHSEAYPK 84
I VPP I + + A G++MT C + P+
Sbjct: 68 DEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPE 127
Query: 85 -SINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTD 143
+I W + NG++I + KY + N +LT++ + D G Y C + N G+ +
Sbjct: 128 PAI-SWFR-NGKLIEENEKYI-LKGSNT-----ELTVRNIINSDGGPYVCRATNKAGEDE 179
Query: 144 GSIKL 148
L
Sbjct: 180 KQAFL 184
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 71.1 bits (174), Expect = 2e-16
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSIN-YWTKENGEI-IAQGSKYEPILLDN 110
PP+I Q A+ G++ ++C + P W+ + + +Y +
Sbjct: 12 NGPPII-SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIST 70
Query: 111 AYKIHMKLTIKAVTKQDFGA-YKCVSKNSLGDTDGSIKLY 149
+ LTI + + DF Y C + NS G I+L
Sbjct: 71 EEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 70.5 bits (173), Expect = 2e-16
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 5/97 (5%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAY 112
P I L + + PK W NG I+ + + +
Sbjct: 2 HFAPTI---TFLESPTSDHHWCIPFTVKGNPKPALQWFY-NGAILNESKYICTKIHVTNH 57
Query: 113 -KIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ H L + T + G Y ++KN G + I
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA 94
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 74.3 bits (182), Expect = 5e-16
Identities = 29/204 (14%), Positives = 58/204 (28%), Gaps = 57/204 (27%)
Query: 3 KQGQNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY-WTKENGE------------ 49
+ P++ + EG++ T+ C + S+ W +EN +
Sbjct: 205 RPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHH 264
Query: 50 -----------IIAQV-----------------------------PPMIWI---QNQLVG 66
I+ I I N V
Sbjct: 265 GDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVF 324
Query: 67 AMEGDQMTLECHSEAYPKSINY-WTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTK 125
+G+ + L EA+PK + W N + Y ++ + +L + +
Sbjct: 325 VNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKG 384
Query: 126 QDFGAYKCVSKNSLGDTDGSIKLY 149
+ G Y + NS + + +Y
Sbjct: 385 TEGGTYTFLVSNSDVNAAIAFNVY 408
Score = 73.9 bits (181), Expect = 8e-16
Identities = 25/194 (12%), Positives = 54/194 (27%), Gaps = 52/194 (26%)
Query: 7 NVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEII--------------- 51
P +++ ++ + E + + C + G+ +
Sbjct: 112 RDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIM 171
Query: 52 ------------------------------------AQVPPMIWIQNQLVGAMEGDQMTL 75
+ P++ + EG++ T+
Sbjct: 172 IKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTV 231
Query: 76 ECHSEAYPKSINY-WTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCV 134
C + S+ W +EN + Q D Y+ LTI + D G + C
Sbjct: 232 TCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCY 291
Query: 135 SKNSLGDTDGSIKL 148
+ N+ G + + L
Sbjct: 292 ANNTFGSANVTTTL 305
Score = 64.3 bits (156), Expect = 2e-12
Identities = 26/206 (12%), Positives = 48/206 (23%), Gaps = 69/206 (33%)
Query: 7 NVPPMIWI---QNQLVGAMEGDQMTLECHSEAYPKSINY-WTKE---------------- 46
I I N V +G+ + L EA+PK + W
Sbjct: 308 VDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSEN 367
Query: 47 ------------------------------------NGEIIAQVPPMIWIQNQLVGAMEG 70
+ P I
Sbjct: 368 ESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTY------DRL 421
Query: 71 DQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDN-------AYKIHMKLTIKAV 123
L+C + +P+ W G + P+ + K+ ++ +I +
Sbjct: 422 VNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSS 481
Query: 124 TKQDFGAYKCVSKNSLGDTDGSIKLY 149
+ G +C + N +G T
Sbjct: 482 AFKHNGTVECKAYNDVGKTSAYFNFA 507
Score = 53.5 bits (128), Expect = 8e-09
Identities = 20/174 (11%), Positives = 45/174 (25%), Gaps = 48/174 (27%)
Query: 5 GQNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE--------------- 49
G+ PP I + GD++ L C + K WT E +
Sbjct: 32 GEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGFVK----WTFEILDETNENKQNEWITEKA 87
Query: 50 ---------------------IIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY 88
+ + P +++ ++ + E + + C +
Sbjct: 88 EATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYS 147
Query: 89 WTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTK-QDFGAYKCVSKNSLGD 141
G+ + + ++ + IK+V + C
Sbjct: 148 LKGCQGKPLPKDLRF-------IPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKS 194
Score = 49.7 bits (118), Expect = 1e-07
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 20/97 (20%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAY 112
PP I + GD++ L C + K WT E + + + E
Sbjct: 34 PSPPSIHPGKSDLIVRVGDEIRLLCTDPGFVK----WTFEILDETNENKQNE-------- 81
Query: 113 KIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
+ + G Y C +K+ L + SI ++
Sbjct: 82 -----WITEKAEATNTGKYTCTNKHGLSN---SIYVF 110
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 70.7 bits (173), Expect = 1e-15
Identities = 23/175 (13%), Positives = 49/175 (28%), Gaps = 52/175 (29%)
Query: 4 QGQNVP-PMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIA---------- 52
+ +++P +++++ Q +E D +TL+C P+ + N +I+
Sbjct: 1 RTEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDA 60
Query: 53 --------------------------QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSI 86
+ ++ +Q E D + L CHS
Sbjct: 61 ATVDDSGEYRCQTQLSTLSDPVQLEVHIGWLL-LQAPRWVFKEEDPIHLRCHSWKNTALH 119
Query: 87 NY-WTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
+ + + I T +D G+Y C
Sbjct: 120 KVTYLQNGKGRKYFHHNSD-------------FYIPKATLKDSGSYFCRGLVGSK 161
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 71.3 bits (174), Expect = 3e-15
Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 27/141 (19%)
Query: 17 QLVGAMEGDQMTLEC--HSEAYPKSINYWTKENGEIIAQVPPMIWIQN-QLVGAMEGDQM 73
LV + + D + C E++ K + PP + I + ++
Sbjct: 180 ILVPSSQVDGKNVTCKVEHESFEKPQLLTVN----LTVYYPPEVSISGYDNNWYLGQNEA 235
Query: 74 TLECHSEAYPKSINY-WTKENGEI----IAQGSKYEPILLDNAYKIHMKLTIKAVTKQDF 128
TL C + + P+ Y W+ G + +AQG++ L I+ V K
Sbjct: 236 TLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQ---------------LLIRPVDKPIN 280
Query: 129 GAYKCVSKNSLGDTDGSIKLY 149
C N+LG + +
Sbjct: 281 TTLICNVTNALGARQAELTVQ 301
Score = 51.6 bits (123), Expect = 3e-08
Identities = 12/92 (13%), Positives = 24/92 (26%), Gaps = 3/92 (3%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSE-AYPKSINYWTKENGEIIAQGSKYEPILLDNA 111
P + Q V C S P + W + G + + P L
Sbjct: 115 LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGM--PNTSQVPGFLSGT 172
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTD 143
+ + ++ D C ++ +
Sbjct: 173 VTVTSLWILVPSSQVDGKNVTCKVEHESFEKP 204
Score = 48.2 bits (114), Expect = 4e-07
Identities = 18/119 (15%), Positives = 36/119 (30%), Gaps = 26/119 (21%)
Query: 49 EIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY-----WTKENGEI-IAQGSK 102
+++ Q P V GD +TL C+ + + + W + +A +
Sbjct: 1 DVVVQAPTQ-------VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQ 53
Query: 103 YEPILLDNAYKIHMK------------LTIKAVTKQDFGAYKC-VSKNSLGDTDGSIKL 148
+ + ++ L + + +D G Y C G I L
Sbjct: 54 TQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWL 112
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 71.8 bits (176), Expect = 3e-15
Identities = 31/189 (16%), Positives = 53/189 (28%), Gaps = 51/189 (26%)
Query: 7 NVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI---------------- 50
PP+ + V ++G + LEC + P W K+ E+
Sbjct: 382 KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS 441
Query: 51 ----------------IA---------------QVPPMIWIQNQLVGAMEGDQMTLECHS 79
A + PP + + + G+++ L+
Sbjct: 442 IHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATI 501
Query: 80 EAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139
E W K+ GEI+ + +N L + G Y C KN
Sbjct: 502 EGAEPISVAWFKDKGEIVRESDNIWISYSENIAT----LQFSRAEPANAGKYTCQIKNEA 557
Query: 140 GDTDGSIKL 148
G + L
Sbjct: 558 GTQECFATL 566
Score = 69.1 bits (169), Expect = 3e-14
Identities = 31/189 (16%), Positives = 54/189 (28%), Gaps = 53/189 (28%)
Query: 8 VPPMIWIQ-NQLVGAMEGDQMTLECHSEAYPKSINYWTKEN------------------- 47
PP + + + EC P+ W K+
Sbjct: 289 EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV 348
Query: 48 ----------------------GEIIA------QVPPMIWIQNQLVGAMEGDQMTLECHS 79
G + + PP+ + V ++G + LEC
Sbjct: 349 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECEL 408
Query: 80 EAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139
+ P W K + + G KY+ I+ +N + I V D G Y+C + N +
Sbjct: 409 QGTPPFQVSWHK-DKRELRSGKKYK-IMSENFL---TSIHILNVDSADIGEYQCKASNDV 463
Query: 140 GDTDGSIKL 148
G +
Sbjct: 464 GSDTCVGSI 472
Score = 68.3 bits (167), Expect = 5e-14
Identities = 40/196 (20%), Positives = 59/196 (30%), Gaps = 57/196 (29%)
Query: 4 QGQNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI------------- 50
+ + +PP + + V G + EC W K+ +
Sbjct: 96 KERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHN 155
Query: 51 -----IAQV--------------------------------PPMIWIQNQLVGAMEGDQM 73
I Q PP ++ V G+
Sbjct: 156 VATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESG 215
Query: 74 TLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYK 132
T +CH I W K+N EI G Y+ L++N LT+ VTK D G Y
Sbjct: 216 TFKCHVTGTAPIKIT-WAKDNREIRP-GGNYKMTLVENTA----TLTVLKVTKGDAGQYT 269
Query: 133 CVSKNSLGDTDGSIKL 148
C + N G S +L
Sbjct: 270 CYASNVAGKDSCSAQL 285
Score = 68.3 bits (167), Expect = 7e-14
Identities = 34/194 (17%), Positives = 55/194 (28%), Gaps = 55/194 (28%)
Query: 4 QGQNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIA---------- 52
VPP ++ V G+ T +CH I W K+N EI
Sbjct: 192 SEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKIT-WAKDNREIRPGGNYKMTLVE 250
Query: 53 -------------------------------------QVPPMIWIQ-NQLVGAMEGDQMT 74
Q PP + + +
Sbjct: 251 NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTR 310
Query: 75 LECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCV 134
EC P+ W K + I + SK+ +++ L + ++ +D G Y C
Sbjct: 311 YECKIGGSPEIKVLWYK-DETEIQESSKFRMSFVES----VAVLEMYNLSVEDSGDYTCE 365
Query: 135 SKNSLGDTDGSIKL 148
+ N+ G S L
Sbjct: 366 AHNAAGSASSSTSL 379
Score = 66.8 bits (163), Expect = 2e-13
Identities = 34/191 (17%), Positives = 56/191 (29%), Gaps = 55/191 (28%)
Query: 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI------------------ 50
PP + V A G+ +TL+C + P+ W KE+ ++
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 51 --------------------------------IAQVPPMIWIQNQLVGAMEGDQMTLECH 78
++PP + + V G + EC
Sbjct: 65 INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECR 124
Query: 79 SEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNS 138
W K +GE++ + + + N L I + G Y C + N
Sbjct: 125 INGSEPLQVSWYK-DGELLKDDANLQTSFIHNVAT----LQILQTDQSHVGQYNCSASNP 179
Query: 139 LGDTDGSIKLY 149
LG S KL
Sbjct: 180 LGTASSSAKLT 190
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 71.4 bits (175), Expect = 3e-15
Identities = 34/188 (18%), Positives = 56/188 (29%), Gaps = 53/188 (28%)
Query: 5 GQNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIA------------ 52
G+ P + + V A +G + LEC + P W + +G+ IA
Sbjct: 201 GEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGIL 260
Query: 53 --------------------------------QVPPMIWIQNQLVGAMEGDQMTLECHSE 80
P + + + EC +
Sbjct: 261 EIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKAN 320
Query: 81 AYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
PK W K NG+ + + + + L I V D G Y+CV++N G
Sbjct: 321 GRPKPTYRWLK-NGDPLLTRDRIQ--IEQGT------LNITIVNLSDAGMYQCVAENKHG 371
Query: 141 DTDGSIKL 148
S +L
Sbjct: 372 VIFSSAEL 379
Score = 64.9 bits (158), Expect = 7e-13
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 45 KENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYE 104
+ +G + P + + V A +G + LEC + P W + +G+ IA+ ++
Sbjct: 195 RNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRH 254
Query: 105 PILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
N L I ++D G+Y+CV++NS G +L
Sbjct: 255 ---KSNG-----ILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Score = 54.5 bits (131), Expect = 3e-09
Identities = 25/190 (13%), Positives = 43/190 (22%), Gaps = 59/190 (31%)
Query: 5 GQNVPPMIWIQ--NQLV-GAMEGDQMTLECHSEAYPKSINYWTKENGEI----------- 50
G P+ + + + E ++ L C + PK W ++
Sbjct: 1 GPGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVV 60
Query: 51 -------------------------------------IAQVPPMIWIQNQLVGAMEGDQM 73
A + V G M
Sbjct: 61 DGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGM 120
Query: 74 TLECH-SEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYK 132
L C + W ++ + + L I V K D G Y
Sbjct: 121 VLLCGPPPHSGELSYAWIFNEYPSYQDNRRF--VSQETG-----NLYIAKVEKSDVGNYT 173
Query: 133 CVSKNSLGDT 142
CV N++ +
Sbjct: 174 CVVTNTVTNH 183
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 70.1 bits (171), Expect = 6e-15
Identities = 27/188 (14%), Positives = 48/188 (25%), Gaps = 43/188 (22%)
Query: 4 QGQNVPPMIWIQNQ-LVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQV-------- 54
V + + + E ++T+ C P+ + ++ G++ V
Sbjct: 89 PDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVALPVPYDHQRGF 147
Query: 55 ---------------------------------PPMIWIQNQLVGAMEGDQMTLECHSEA 81
+ + +G+ +TL C
Sbjct: 148 SGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIG 207
Query: 82 YPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGD 141
WT E LLD Y I L I + +D G Y C S+ D
Sbjct: 208 NEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVND 267
Query: 142 TDGSIKLY 149
+
Sbjct: 268 HQDEKAIN 275
Score = 47.4 bits (112), Expect = 7e-07
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 16/97 (16%)
Query: 54 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYK 113
PP +LV L C A + W + + E + +K + +
Sbjct: 4 TPP----GPELV-LNVSSTFVLTCSGSA---PVV-WERMSQEPPQEMAKAQDGTFSS--- 51
Query: 114 IHMKLTIKAVTKQDFGAYKCVSKNSLG-DTDGSIKLY 149
LT+ +T D G Y C +S G +TD +LY
Sbjct: 52 ---VLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLY 85
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 68.7 bits (168), Expect = 7e-15
Identities = 33/186 (17%), Positives = 58/186 (31%), Gaps = 46/186 (24%)
Query: 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSI--NYWTKENGEIIA------------- 52
P I +++ +TL+C+ + ++ +YWTK E+ A
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRIN 61
Query: 53 ----------------------------QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK 84
+ P I + EG + C S YP
Sbjct: 62 KPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPH 121
Query: 85 -SINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAV-TKQDFGAYKCVSKNSLGDT 142
W K+ + + S + + +L I + +D G Y+C + NS+G
Sbjct: 122 PEW-MWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSA 180
Query: 143 DGSIKL 148
S L
Sbjct: 181 SVSTVL 186
Score = 59.9 bits (145), Expect = 1e-11
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSI--NYWTKENGEIIAQGSKYEPILLDN 110
Q P I +++ +TL+C+ + ++ +YWTK NG + K
Sbjct: 1 QNEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTK-NGVELTATRKNAS----- 54
Query: 111 AYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+M+ I +D G Y CV + + + +
Sbjct: 55 ----NMEYRINKPRAEDSGEYHCVY-HFVSAPKANATI 87
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 68.6 bits (168), Expect = 7e-15
Identities = 40/179 (22%), Positives = 61/179 (34%), Gaps = 55/179 (30%)
Query: 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTK----------------------- 45
P+I + V A+ + T C E+YP+ WT+
Sbjct: 7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTI 66
Query: 46 ---------------EN--GEIIA-------QVPPMIWIQNQLVGAMEGDQMTLECHSEA 81
N G + ++ P I V +EG + L C +
Sbjct: 67 LSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMG 126
Query: 82 YPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
PK W K + + S+ +L + L I V K+D G Y+CV+KNSLG
Sbjct: 127 NPKPSVSWIK-GDSALRENSRIA-VLESGS------LRIHNVQKEDAGQYRCVAKNSLG 177
Score = 59.0 bits (143), Expect = 3e-11
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAY 112
P+I + V A+ + T C E+YP+ WT+ I ++Y I +
Sbjct: 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYS-IRENGQL 63
Query: 113 KIHMKLTIKAVTKQDFGAYKCVSKNSLGDT 142
LTI +V D G Y C + N +G
Sbjct: 64 -----LTILSVEDSDDGIYCCTANNGVGGA 88
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 70.2 bits (172), Expect = 7e-15
Identities = 34/193 (17%), Positives = 59/193 (30%), Gaps = 57/193 (29%)
Query: 7 NVPPMIWIQ--NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI-------------- 50
PP +I+ + + EC P+ W K+ EI
Sbjct: 96 QEPPR-FIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESV 154
Query: 51 ------------------IA---------------QVPPMIWIQNQLVGAMEGDQMTLEC 77
A + PP+ + V ++G + LEC
Sbjct: 155 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLEC 214
Query: 78 HSEAYPK-SINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSK 136
+ P ++ W K + + G KY+ I+ +N + I V D G Y+C +
Sbjct: 215 ELQGTPPFQVS-WHK-DKRELRSGKKYK-IMSENF---LTSIHILNVDSADIGEYQCKAS 268
Query: 137 NSLGDTDGSIKLY 149
N +G +
Sbjct: 269 NDVGSYTCVGSIT 281
Score = 67.5 bits (165), Expect = 6e-14
Identities = 35/193 (18%), Positives = 57/193 (29%), Gaps = 55/193 (28%)
Query: 5 GQNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI-------------- 50
G PP ++ V G+ T +CH W K+N EI
Sbjct: 1 GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 51 ------------------IA---------------QVPPMIWIQ--NQLVGAMEGDQMTL 75
A Q PP +I+ + +
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPR-FIKKLEPSRIVKQDEHTRY 119
Query: 76 ECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVS 135
EC P+ W K + I + SK+ +++ L + ++ +D G Y C +
Sbjct: 120 ECKIGGSPEIKVLWYK-DETEIQESSKFRMSFVESVAV----LEMYNLSVEDSGDYTCEA 174
Query: 136 KNSLGDTDGSIKL 148
N+ G S L
Sbjct: 175 HNAAGSASSSTSL 187
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 69.8 bits (171), Expect = 9e-15
Identities = 33/194 (17%), Positives = 54/194 (27%), Gaps = 61/194 (31%)
Query: 7 NVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI---------------- 50
+G+ + C + P W N E+
Sbjct: 96 YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 155
Query: 51 --------------------------------IAQVPPMI----WIQNQLVGAMEGDQMT 74
I VPP I N G++MT
Sbjct: 156 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATA--ERGEEMT 213
Query: 75 LECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCV 134
C + P+ W + NG++I + KY + N +LT++ + D G Y C
Sbjct: 214 FSCRASGSPEPAISWFR-NGKLIEENEKYI-LKGSNT-----ELTVRNIINSDGGPYVCR 266
Query: 135 SKNSLGDTDGSIKL 148
+ N G+ + L
Sbjct: 267 ATNKAGEDEKQAFL 280
Score = 67.1 bits (164), Expect = 8e-14
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
Query: 52 AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNA 111
+ + I V G+ C + P+SI W GE I + + +
Sbjct: 1 SMALLQVTISLSKVELSVGESKFFTCTAIGEPESI-DWYNPQGEKIISTQRVV-VQKEGV 58
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLGDT 142
LTI +D G Y+C + ++ G T
Sbjct: 59 RSR---LTIYNANIEDAGIYRCQATDAKGQT 86
Score = 62.5 bits (152), Expect = 3e-12
Identities = 26/182 (14%), Positives = 40/182 (21%), Gaps = 56/182 (30%)
Query: 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIA--------------- 52
+ I V G+ C + P+SI W GE I
Sbjct: 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPESI-DWYNPQGEKIISTQRVVVQKEGVRSR 61
Query: 53 ----------------------------------QVPPMIWIQNQLVGAMEGDQMTLECH 78
+G+ + C
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCR 121
Query: 79 SEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNS 138
+ P W N E+ +L +N L I + K D G Y+C +
Sbjct: 122 VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN------LQILNINKSDEGIYRCEGRVE 175
Query: 139 LG 140
Sbjct: 176 AR 177
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 70.3 bits (172), Expect = 1e-14
Identities = 36/185 (19%), Positives = 55/185 (29%), Gaps = 46/185 (24%)
Query: 7 NVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI--------IAQV---- 54
P I G C P W K+ I I V
Sbjct: 341 TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKED 400
Query: 55 ----------------------------PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSI 86
PP+I Q G + L+C + P
Sbjct: 401 KGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPE 460
Query: 87 NYWTKENGEIIAQGSKY---EPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTD 143
W +G+ IA +Y + + ++ + L I +V D G YKC++K+ +G +
Sbjct: 461 ISWEL-DGKKIANNDRYQVGQYVTVNGDVVSY--LNITSVHANDGGLYKCIAKSKVGVAE 517
Query: 144 GSIKL 148
S KL
Sbjct: 518 HSAKL 522
Score = 63.8 bits (155), Expect = 2e-12
Identities = 31/182 (17%), Positives = 55/182 (30%), Gaps = 53/182 (29%)
Query: 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSIN-YWTKENGEI----------------- 50
P +I + A G +TL C +N WT + I
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSV 678
Query: 51 ----------------IA---------------QVPPMIWIQNQLVGAMEGDQMTLECHS 79
A VPP ++ +G +EC +
Sbjct: 679 LTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKA 738
Query: 80 EAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHM-KLTIKAVTKQDFGAYKCVSKNS 138
+ +PK W K G+ + Y+ + + ++ L + + K + G Y C + N
Sbjct: 739 DGFPKPQVTWKKAVGDTPGE---YKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAING 795
Query: 139 LG 140
+G
Sbjct: 796 IG 797
Score = 62.6 bits (152), Expect = 5e-12
Identities = 32/189 (16%), Positives = 51/189 (26%), Gaps = 53/189 (28%)
Query: 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI---------------IA 52
P I Q + + G+ + + C YP W ++N + I
Sbjct: 526 GLPYI-RQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIE 584
Query: 53 QV--------------------------------PPMIWIQNQLVGAMEGDQMTLECHSE 80
V P +I + A G +TL C
Sbjct: 585 NVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVP 644
Query: 81 AYPKSIN-YWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139
+N WT + I + LTI+AV G + C ++N
Sbjct: 645 GGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSV----LTIEAVEASHAGNFTCHARNLA 700
Query: 140 GDTDGSIKL 148
G + L
Sbjct: 701 GHQQFTTPL 709
Score = 62.3 bits (151), Expect = 8e-12
Identities = 30/197 (15%), Positives = 46/197 (23%), Gaps = 65/197 (32%)
Query: 2 EKQGQNVPPMIWIQ-NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIA-------- 52
E VP ++ + + M L C ++ YP + W K
Sbjct: 240 EPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLND 299
Query: 53 -----------------------------------------QVPPMIWIQNQLVGAMEGD 71
P I G
Sbjct: 300 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGR 359
Query: 72 QMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAY 131
C P W K +G+ I L I++V K+D G Y
Sbjct: 360 PAVFTCQYTGNPIKTVSWMK-DGKAIGHSESV--------------LRIESVKKEDKGMY 404
Query: 132 KCVSKNSLGDTDGSIKL 148
+C +N + S +L
Sbjct: 405 QCFVRNDRESAEASAEL 421
Score = 59.9 bits (145), Expect = 4e-11
Identities = 30/193 (15%), Positives = 52/193 (26%), Gaps = 62/193 (32%)
Query: 4 QGQNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIA----------- 52
G+ PP+I Q G + L+C + P W + +I
Sbjct: 424 GGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVT 483
Query: 53 -----------------------------------------QVPPMIWIQNQLVGAMEGD 71
P I Q + + G+
Sbjct: 484 VNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYI-RQMEKKAIVAGE 542
Query: 72 QMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQ-DFGA 130
+ + C YP W + + + K + + + L I+ V + D
Sbjct: 543 TLIVTCPVAGYPIDSIVWER-DNRALPINRKQK-VFPNG------TLIIENVERNSDQAT 594
Query: 131 YKCVSKNSLGDTD 143
Y CV+KN G +
Sbjct: 595 YTCVAKNQEGYSA 607
Score = 58.0 bits (140), Expect = 2e-10
Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 1/93 (1%)
Query: 49 EIIAQVPPMIWIQ-NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPIL 107
Q P+ + + +EC + P W + +G + I
Sbjct: 32 PDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQIS 91
Query: 108 LDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
D + Y C+++N G
Sbjct: 92 SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFG 124
Score = 54.6 bits (131), Expect = 3e-09
Identities = 24/195 (12%), Positives = 51/195 (26%), Gaps = 65/195 (33%)
Query: 8 VPPMIWIQ-NQLVGAMEGDQMTLECHSEAYPKSINYWTKENG------------------ 48
P+ + + +EC + P W + +G
Sbjct: 37 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 96
Query: 49 -----------------------------------EIIAQVPPMIWIQNQLVGAMEGDQM 73
+ A V + G+
Sbjct: 97 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSA 156
Query: 74 TLECHSEAY---PKSINYWTKENGEIIAQGSKYEPILLDNAYKIHM--KLTIKAVTKQD- 127
++C ++ + W + E G++Y D Y + +L I+ V +D
Sbjct: 157 VIKCLIPSFVADFVEVVSWHTDEEENYFPGAEY-----DGKYLVLPSGELHIREVGPEDG 211
Query: 128 FGAYKCVSKNSLGDT 142
+ +Y+C +K+ L
Sbjct: 212 YKSYQCRTKHRLTGE 226
Score = 34.1 bits (78), Expect = 0.021
Identities = 2/25 (8%), Positives = 8/25 (32%)
Query: 118 LTIKAVTKQDFGAYKCVSKNSLGDT 142
+ + + + V+ + G
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQ 25
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 69.5 bits (170), Expect = 2e-14
Identities = 32/191 (16%), Positives = 57/191 (29%), Gaps = 56/191 (29%)
Query: 2 EKQGQNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIA--------- 52
E Q P + A+ G +TLEC + P W K +G +
Sbjct: 200 EDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLL 259
Query: 53 --------------------------------QVPPMI--WIQNQLVGAMEGDQMTLECH 78
P I + G + C
Sbjct: 260 HIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEA--DIGSDLRWSCV 317
Query: 79 SEAYPK-SINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKN 137
+ P+ ++ W + +G+ +A ++ E + L + +D G Y+CV++N
Sbjct: 318 ASGKPRPAV-RWLR-DGQPLASQNRIE--VSGGE------LRFSKLVLEDSGMYQCVAEN 367
Query: 138 SLGDTDGSIKL 148
G S +L
Sbjct: 368 KHGTVYASAEL 378
Score = 50.2 bits (120), Expect = 8e-08
Identities = 14/100 (14%), Positives = 22/100 (22%), Gaps = 6/100 (6%)
Query: 50 IIAQVPPMIWIQNQLVGAMEGDQMTLECH-SEAYPKSINYWTKENGEIIAQGSKYEPILL 108
+ + V EG + C YP W +
Sbjct: 96 RFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQ 155
Query: 109 DNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L I D G Y C + + + S+
Sbjct: 156 TTG-----NLYIAKTEASDLGNYSCFATSHIDFITKSVFS 190
Score = 45.6 bits (108), Expect = 3e-06
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 55 PPMIWIQ--NQLV-GAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNA 111
P+ Q + L +++TL C + A P + W NG + G L+
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKM-NGTELKMGPDSRYRLVAGD 62
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
I V +D G+Y+CV+ N+ G
Sbjct: 63 LVI-----SNPVKAKDAGSYQCVATNARG 86
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 66.8 bits (163), Expect = 2e-14
Identities = 23/175 (13%), Positives = 50/175 (28%), Gaps = 52/175 (29%)
Query: 4 QGQNVP-PMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIA---------- 52
+ +++P +++++ Q +E D +TL+C P+ + N +I+
Sbjct: 1 RTEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDA 60
Query: 53 --------------------------QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSI 86
+ ++ + V E D + L CHS
Sbjct: 61 ATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALH 119
Query: 87 NY-WTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
+ + + + I T +D G+Y C
Sbjct: 120 KVTYLQNGKDRKYFHHNSD-------------FHIPKATLKDSGSYFCRGLVGSK 161
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 67.4 bits (164), Expect = 2e-14
Identities = 18/137 (13%), Positives = 35/137 (25%), Gaps = 19/137 (13%)
Query: 13 WIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQ 72
+ A C + + + P + + ++ +
Sbjct: 70 VVTA----ANISHDGNYLCRMKLGETEVTKQE----HLSVVKPLTLSVHSERSQFPDFSV 121
Query: 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHM--KLTIKA---VTKQD 127
+T+ C A+P W G A P + L++ + K
Sbjct: 122 LTVTCTVNAFPHPHVQWLMPEGVEPA------PTAANGGVMKEKDGSLSVAVDLSLPKPW 175
Query: 128 FGAYKCVSKNSLGDTDG 144
CV KN + G
Sbjct: 176 HLPVTCVGKNDKEEAHG 192
Score = 34.6 bits (79), Expect = 0.011
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 15/99 (15%)
Query: 65 VGAMEGDQMTLECHSE---AYPKSINYWTK--ENGEIIAQGSKYEPILLDN-----AYKI 114
V A G+++TL + P+ W K E + G + ++ + I
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 115 HMK-----LTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
H L + A G Y C K + L
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHL 99
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 66.4 bits (162), Expect = 3e-14
Identities = 19/168 (11%), Positives = 39/168 (23%), Gaps = 51/168 (30%)
Query: 10 PMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY-WTKENGEI------------------ 50
++ ++ + ++ D +TL C P+S + W I
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSG 64
Query: 51 -----------------IAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY-WTKE 92
++ +Q + EG+ + L CHS + + +
Sbjct: 65 EYTCQTGQTSLSDPVHLTVLFEWLV-LQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQN 123
Query: 93 NGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
+I G Y C
Sbjct: 124 GKSQKFSHLDPT-------------FSIPQANHSHSGDYHCTGNIGYT 158
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 68.7 bits (168), Expect = 3e-14
Identities = 38/197 (19%), Positives = 59/197 (29%), Gaps = 59/197 (29%)
Query: 1 MEKQGQNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI---------- 50
+ G + + V A+EG LEC YP W + I
Sbjct: 213 LSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL 272
Query: 51 --------------------IA---------------QVPPMI--WIQNQLVGAMEGDQM 73
+ VPP N E +
Sbjct: 273 GGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYA--YESMDI 330
Query: 74 TLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYK 132
EC P ++ W K NG+++ ++ I+ + L I V K D G Y+
Sbjct: 331 EFECAVSGKPVPTV-NWMK-NGDVVIPSDYFQ-IVGGS------NLRILGVVKSDEGFYQ 381
Query: 133 CVSKNSLGDTDGSIKLY 149
CV++N G+ S +L
Sbjct: 382 CVAENEAGNAQSSAQLI 398
Score = 67.6 bits (165), Expect = 1e-13
Identities = 37/195 (18%), Positives = 54/195 (27%), Gaps = 61/195 (31%)
Query: 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI----------------- 50
P Q + + A GD + L+C P +W K ++
Sbjct: 120 GPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGAL 179
Query: 51 -IAQV------------------------------------PPMIWIQNQLVGAMEGDQM 73
I+++ + V A+EG
Sbjct: 180 QISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDA 239
Query: 74 TLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKC 133
LEC YP W + I + KY LL + L I VT D G Y C
Sbjct: 240 VLECCVSGYPPPSFTWLRGEEVIQLRSKKY--SLLGGS-----NLLISNVTDDDSGTYTC 292
Query: 134 VSKNSLGDTDGSIKL 148
V + S +L
Sbjct: 293 VVTYKNENISASAEL 307
Score = 56.0 bits (135), Expect = 9e-10
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAY 112
P Q + + A GD + L+C P +W K ++ PI D+
Sbjct: 119 AGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDL-------NPIPGDSRV 171
Query: 113 KIHM--KLTIKAVTKQDFGAYKCVSKNSLG 140
+ L I + D G Y+C ++N
Sbjct: 172 VVLPSGALQISRLQPGDSGVYRCSARNPAS 201
Score = 49.8 bits (119), Expect = 1e-07
Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 9/110 (8%)
Query: 41 NYWTKENGEI------IAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY-WTKEN 93
+ W E + + M G + L C +E+ W K+
Sbjct: 1 DRWGSELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDG 60
Query: 94 GEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCV-SKNSLGDT 142
+ + L + + I + K D G Y+C S G
Sbjct: 61 LILALGMDDRKQQLPNGSLLIQ-NILHSRHHKPDEGLYQCEASLGDSGSI 109
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 64.4 bits (157), Expect = 5e-14
Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 7/102 (6%)
Query: 48 GEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPIL 107
G + PP+I L C + P W K+ + Q S+
Sbjct: 1 GSSGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRI--KQ 58
Query: 108 LDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
L+N L I+ D G Y C++ G+ S +
Sbjct: 59 LENG-----VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIE 95
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 67.7 bits (165), Expect = 5e-14
Identities = 32/194 (16%), Positives = 51/194 (26%), Gaps = 54/194 (27%)
Query: 7 NVPPMIWIQN-QLVGAMEGDQMTLECHSEAYPKSINY-WTKENGEII------------- 51
P W Q V +EG + L C + +E G +
Sbjct: 86 KDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG 145
Query: 52 -------------------------------------AQVPPMIWIQNQLVGAMEGDQMT 74
PP I ++ + + G+
Sbjct: 146 FIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQ 205
Query: 75 LECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCV 134
+ C + N K + DN YK L++ AV QD G Y CV
Sbjct: 206 IVCSATNAEVGFNVILKRGDTKLE--IPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCV 263
Query: 135 SKNSLGDTDGSIKL 148
+ N +G ++
Sbjct: 264 ASNDVGTRTATMNF 277
Score = 56.9 bits (137), Expect = 4e-10
Identities = 23/179 (12%), Positives = 42/179 (23%), Gaps = 55/179 (30%)
Query: 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE------------------- 49
P+I + G+ +TL C S + W
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNGSVE----WDGPISPYWTLDPESPGSTLTTRNAT 59
Query: 50 -----------------------IIAQVPPMIWIQN-QLVGAMEGDQMTLECHSEAYPKS 85
+ + P W Q V +EG + L C
Sbjct: 60 FKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALK 119
Query: 86 INY-WTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTD 143
+ +E G + + + Y I+ D Y C + + ++
Sbjct: 120 DSVSLMREGGRQVLRKTVY--FFSPWRG-----FIIRKAKVLDSNTYVCKTMVNGREST 171
Score = 52.6 bits (126), Expect = 9e-09
Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 14/98 (14%)
Query: 52 AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNA 111
A P+I + G+ +TL C S + W ++
Sbjct: 1 ADPAPVIEPSGPELVVEPGETVTLRCVSNGSVE----WDGPISPYWTLDP-------ESP 49
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
LT + T ++ G Y+C +I LY
Sbjct: 50 GST---LTTRNATFKNTGTYRCTELEDPMAGSTTIHLY 84
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 65.6 bits (160), Expect = 8e-14
Identities = 23/193 (11%), Positives = 41/193 (21%), Gaps = 58/193 (30%)
Query: 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY-WTKENGE------------------ 49
+ I G+ C K + W NGE
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 50 ---------------------------------IIAQVPPMIWIQNQLVGAMEGDQMTLE 76
+ M EG+ +
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIV 121
Query: 77 CHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSK 136
C + W + ++I + +L +N L I+ + K D G Y+C +
Sbjct: 122 CDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY------LQIRGIKKTDEGTYRCEGR 175
Query: 137 NSLGDTDGSIKLY 149
+
Sbjct: 176 ILARGEINFKDIQ 188
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 67.1 bits (164), Expect = 9e-14
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Query: 52 AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNA 111
+ P + + + TL C +PK I W ++ EIIA G KY + +
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKY--RIQEFK 58
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKK 155
H +L I +VT D Y+ + N G G+ L + K
Sbjct: 59 GGYH-QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAK 101
Score = 64.0 bits (156), Expect = 1e-12
Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 58/195 (29%)
Query: 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI----------------- 50
+ P + + + TL C +PK I W ++ EI
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 51 ---IAQV----------------------------------PPMIWIQNQLVGAMEGDQM 73
IA V P V A+ G+ +
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 74 TLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKC 133
+++ P + W K ++I Y+ I+ + + + V ++D G Y
Sbjct: 123 SIKIPFSGKPDPVITWQK-GQDLIDNNGHYQVIVTRSFTSL---VFPNGVERKDAGFYVV 178
Query: 134 VSKNSLGDTDGSIKL 148
+KN G +++L
Sbjct: 179 CAKNRFGIDQKTVEL 193
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 63.3 bits (154), Expect = 1e-13
Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 4/96 (4%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAY 112
PP + L + +E P +W NG+ + +
Sbjct: 6 YYPPRV---VSLEEPELRLEHCIEFVVRGNPPPTLHWLH-NGQPLRESKIIHVEYYQEGE 61
Query: 113 KIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L T + G Y ++KN LG + +I
Sbjct: 62 ISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING 97
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 63.1 bits (154), Expect = 2e-13
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 13/103 (12%)
Query: 50 IIAQVPPMI--WIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPI 106
++ +V P I ++NQ G+ + + C + P I W K + E + + S +
Sbjct: 5 VLERVAPTITGNLENQTT--SIGESIEVSCTASGNPPPQIM-WFK-DNETLVEDSGIV-L 59
Query: 107 LLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
N LTI+ V K+D G Y C + + LG
Sbjct: 60 KDGNR-----NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 67.1 bits (163), Expect = 2e-13
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 9/101 (8%)
Query: 49 EIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPIL 107
++ +V P I + G+ + + C + P I W K + E + + S +
Sbjct: 660 TVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQI-MWFK-DNETLVEDSGIV-LK 716
Query: 108 LDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
N LTI+ V K+D G Y C + + LG
Sbjct: 717 DGNR-----NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF 752
Score = 58.2 bits (140), Expect = 2e-10
Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 16/112 (14%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEP------- 105
P I +Q + E + ++L C ++ W K + + P
Sbjct: 548 TRGPEITLQPDMQ-PTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNL 606
Query: 106 --------ILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
+ N+ + + +K + QD G Y C++++ +
Sbjct: 607 DTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQ 658
Score = 55.5 bits (133), Expect = 1e-09
Identities = 24/167 (14%), Positives = 50/167 (29%), Gaps = 22/167 (13%)
Query: 7 NVPPMIW---IQNQLVGAMEGDQMTLECHSEAYPKSINY-WTKENGEIIAQVPPMIWIQN 62
VPP I + + + G TL C A P + W + E A P
Sbjct: 418 YVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEP------- 470
Query: 63 QLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKA 122
+++ + +I +++ I N T+
Sbjct: 471 -------SQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKN----KTVSTLVI 519
Query: 123 VTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKE 169
YKC + N +G + I + + + + + + +++
Sbjct: 520 QAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQES 566
Score = 55.5 bits (133), Expect = 2e-09
Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 17/105 (16%)
Query: 49 EIIAQVPPMIWI---QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEP 105
+ P + LV A G+++ + YP W K +
Sbjct: 321 FVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPL--------- 371
Query: 106 ILLDNAYKIHM--KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
++ + I LTI V+++D G Y + N + S +
Sbjct: 372 ---ESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVV 413
Score = 54.8 bits (131), Expect = 3e-09
Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 5/126 (3%)
Query: 52 AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILL--- 108
++ ++ + + G+++ L C + + E Q K L
Sbjct: 221 YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ 280
Query: 109 --DNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKK 166
K LTI VT+ D G Y C + + L S + +K +
Sbjct: 281 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLV 340
Query: 167 KKEEGK 172
+ G+
Sbjct: 341 EATVGE 346
Score = 53.6 bits (128), Expect = 8e-09
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 8/120 (6%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
P + IQ ++ + + C + W N + ++ D +
Sbjct: 31 LPRLSIQKDILTIKANTTLQITCRGQRDLD----WLWPNNQSGSEQRVEVTECSDGLF-- 84
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL--YGKKKKKKKKEKEKKVKKKKEEGK 172
LTI V D GAYKC + + + + + Y ++ V + + K
Sbjct: 85 CKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNK 144
Score = 47.1 bits (111), Expect = 1e-06
Identities = 7/96 (7%), Positives = 23/96 (23%), Gaps = 8/96 (8%)
Query: 54 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSIN-YWTKENGEIIAQGSKYEPILLDNAY 112
+ + + + C +++ + G++ +
Sbjct: 127 ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRIS-------W 179
Query: 113 KIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
TI + G C +K + + +
Sbjct: 180 DSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYI 215
Score = 26.6 bits (58), Expect = 6.3
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 120 IKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+++ + CV + S+ L
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSL 29
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 62.4 bits (152), Expect = 2e-13
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 13/97 (13%)
Query: 55 PPMI--WIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLDNA 111
PP+I NQ + L+C + P I W KE + + + +
Sbjct: 8 PPIILQGPANQTL--AVDGTALLKCKATGDPLPVI-SWLKEGFTFPGRDPRA--TIQEQG 62
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L IK + D G Y CV+ +S G+T S L
Sbjct: 63 T-----LQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 62.0 bits (151), Expect = 2e-13
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
++ + GD + L C +SIN W + +G +A+ ++ +
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDVQSIN-WLR-DGVQLAESNR---TRITGEE-- 55
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ ++ D G Y CV+ + G +
Sbjct: 56 ---VEVQDSVPADSGLYACVTSSPSGSDTTYFSV 86
Score = 34.7 bits (80), Expect = 0.004
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI 50
++ + GD + L C +SIN W ++ ++
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDVQSIN-WLRDGVQL 43
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 63.8 bits (155), Expect = 3e-13
Identities = 24/174 (13%), Positives = 46/174 (26%), Gaps = 55/174 (31%)
Query: 8 VP--PMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY-WTKENGEI-------------- 50
VP P + + +G+ +TL C+ + + + W
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKF 60
Query: 51 ----------------------IAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY 88
+ ++ ++V MEG + L CH
Sbjct: 61 EDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVV--MEGQPLFLRCHGWRNWDVYKV 118
Query: 89 -WTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGD 141
+ K+ + + ++I T +D G Y C K D
Sbjct: 119 IYYKDGEALKYWYE-------------NHNISITNATVEDSGTYYCTGKVWQLD 159
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 64.9 bits (158), Expect = 4e-13
Identities = 25/175 (14%), Positives = 39/175 (22%), Gaps = 49/175 (28%)
Query: 10 PMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY-WTKENGEI--------IAQV------ 54
+I +Q V + + +TL C P S + W I
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDSG 61
Query: 55 --------------------PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY-WTKEN 93
+ +Q EG+ + L CH+ N + +
Sbjct: 62 EYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNG 121
Query: 94 GEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
LTI G Y C T I +
Sbjct: 122 KAFKFFHWNSN-------------LTILKTNISHNGTYHCSGMGKHRYTSAGISV 163
Score = 61.1 bits (148), Expect = 1e-11
Identities = 23/178 (12%), Positives = 47/178 (26%), Gaps = 59/178 (33%)
Query: 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY-WTKENGEI----------IAQV--- 54
++ +Q EG+ + L CH+ N + + I +
Sbjct: 83 GWLL-LQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNIS 141
Query: 55 -----------------------------PPMIWIQNQLVGAMEGDQMTLECHSEAYPKS 85
P++ +EG+ +TL C ++ +
Sbjct: 142 HNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSP-LLEGNLVTLSCETKLLLQR 200
Query: 86 IN---YWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
Y++ G +G + I ++D G Y C + G
Sbjct: 201 PGLQLYFSFYMGSKTLRGRNTSS-----------EYQILTARREDSGLYWCEAATEDG 247
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 65.7 bits (160), Expect = 4e-13
Identities = 24/191 (12%), Positives = 48/191 (25%), Gaps = 52/191 (27%)
Query: 5 GQNVPPMIWIQN--QLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIA---------- 52
+ P ++ Q + G + LEC + P W K+ G++ +
Sbjct: 216 AERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNK 275
Query: 53 ----------------------------------QVPPMIWIQNQLVGAMEGDQMTLECH 78
+ P + + + G+ L C
Sbjct: 276 ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCR 335
Query: 79 SEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNS 138
+ PK W NGE + + + + Y+C + N
Sbjct: 336 ANGNPKPTVQWMV-NGEPLQSAPPNPNREVAGD-----TIIFRDTQISSRAVYQCNTSNE 389
Query: 139 LGDTDGSIKLY 149
G + +
Sbjct: 390 HGYLLANAFVS 400
Score = 58.3 bits (141), Expect = 1e-10
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 47 NGEIIAQVPPMIWIQN--QLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYE 104
+ + P ++ Q + G + LEC + P W K+ G++ + +K+E
Sbjct: 212 TRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFE 271
Query: 105 PILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
N K L I V+++D G Y C++ N +G +I +
Sbjct: 272 -----NFNKA---LRITNVSEEDSGEYFCLASNKMGSIRHTISV 307
Score = 50.6 bits (121), Expect = 5e-08
Identities = 30/191 (15%), Positives = 50/191 (26%), Gaps = 63/191 (32%)
Query: 8 VPPMIWIQ-NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI---------------- 50
PP I Q + D + +EC ++ P +WT+ +
Sbjct: 15 QPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGT 74
Query: 51 -------------------------------------IAQVPPMIWIQNQLVGAMEGDQM 73
+++ P V EG +
Sbjct: 75 LVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPL 134
Query: 74 TLECH-SEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQD-FGAY 131
TL+C+ P + +W + E I Q + N L V QD Y
Sbjct: 135 TLQCNPPPGLPSPVIFWMSSSMEPITQDKRV--SQGHNG-----DLYFSNVMLQDMQTDY 187
Query: 132 KCVSKNSLGDT 142
C ++ T
Sbjct: 188 SCNARFHFTHT 198
Score = 49.1 bits (117), Expect = 2e-07
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 53 QVPPMIWIQ-NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNA 111
PP I Q + D + +EC ++ P +WT+ N + +
Sbjct: 14 TQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR-NSRFFNIAKDPRVSMRRRS 72
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
+ + ++ G Y+C ++N G
Sbjct: 73 GTLVIDFRSGGRPEEYEGEYQCFARNKFG 101
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 65.6 bits (160), Expect = 5e-13
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
Query: 47 NGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPI 106
+ + + P + + EG+ + + C ++ P + +W ++ + A+ +
Sbjct: 92 SMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKT 151
Query: 107 LLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
I L I + DFG Y C + N +G L
Sbjct: 152 YSTGRKMI---LEIAPTSDNDFGRYNCTATNHIGTRFQEYIL 190
Score = 55.6 bits (134), Expect = 1e-09
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 59 WIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEP---ILLDNAYKIH 115
IQ + E Q+TL C +E P W + I + +
Sbjct: 4 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 116 MKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L IK V D G Y C + + +G S+ L
Sbjct: 64 -SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 95
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 63.3 bits (154), Expect = 6e-13
Identities = 40/191 (20%), Positives = 59/191 (30%), Gaps = 53/191 (27%)
Query: 8 VPPMIWIQN-QLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI---------------- 50
+P + Q A G++MT C + P+ W + I
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT 61
Query: 51 --------------IA---------------QVPPMIWIQNQLVGAMEGDQMTLECHSEA 81
A V P I IQ + E Q+TL C +E
Sbjct: 62 VRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHI-IQLKNETTYENGQVTLVCDAEG 120
Query: 82 YPK-SINYWTKE-NGEIIAQGSKYEP--ILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKN 137
P I W + +G +G K I + + L IK V D G Y C + +
Sbjct: 121 EPIPEI-TWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS-SLHIKDVKLSDSGRYDCEAAS 178
Query: 138 SLGDTDGSIKL 148
+G S+ L
Sbjct: 179 RIGGHQKSMYL 189
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 62.9 bits (153), Expect = 8e-13
Identities = 25/181 (13%), Positives = 42/181 (23%), Gaps = 56/181 (30%)
Query: 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIA---------------- 52
+ I V G+ C + P+SI+++ GE I
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNP-QGEKIISTQRVVVQKEGVRSRL 60
Query: 53 ---------------------------------QVPPMIWIQNQLVGAMEGDQMTLECHS 79
+G+ + C
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRV 120
Query: 80 EAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139
+ P W N E+ +L +N L I + K D G Y+C +
Sbjct: 121 SSSPAPAVSWLYHNEEVTTISDNRFAMLANNN------LQILNINKSDEGIYRCEGRVEA 174
Query: 140 G 140
Sbjct: 175 R 175
Score = 59.4 bits (144), Expect = 1e-11
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
+ I V G+ C + P+SI+++ GE I + + +
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNP-QGEKIISTQRVV-VQKEGVRS- 58
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNSLGDT 142
+LTI +D G Y+C + ++ G T
Sbjct: 59 --RLTIYNANIEDAGIYRCQATDAKGQT 84
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 62.8 bits (153), Expect = 1e-12
Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 58/195 (29%)
Query: 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI----------------- 50
+ P + + + TL C +PK I W ++ EI
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 51 ---IAQV----------------------------------PPMIWIQNQLVGAMEGDQM 73
IA V P V A+ G+ +
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 74 TLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKC 133
+++ P + W K ++I Y+ +++ + V ++D G Y
Sbjct: 123 SIKIPFSGKPDPVITWQK-GQDLIDNNGHYQ-VIVTR--SFTSLVFPNGVERKDAGFYVV 178
Query: 134 VSKNSLGDTDGSIKL 148
+KN G +++L
Sbjct: 179 CAKNRFGIDQKTVEL 193
Score = 56.7 bits (137), Expect = 2e-10
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 52 AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNA 111
+ P + + + TL C +PK I W ++ EIIA G KY
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ +L I +VT D Y+ + N G G+ L
Sbjct: 61 ---YHQLIIASVTDDDATVYQVRATNQGGSVSGTASL 94
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 60.4 bits (147), Expect = 1e-12
Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 11/101 (10%)
Query: 52 AQVPPMI--WIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILL 108
+ I ++ V EG+ C ++ P ++ W + G++++ ++++
Sbjct: 11 TTLAARILTKPRSMTV--YEGESARFSCDTDGEPVPTVT-WLR-KGQVLSTSARHQVTTT 66
Query: 109 DNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
I +V D G Y V +NS G + L
Sbjct: 67 KYKST----FEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 60.5 bits (147), Expect = 2e-12
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLDNA 111
+ PM + Q +EGD + LEC A P + +W + N E++ + + DN
Sbjct: 13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKL-FWKR-NNEMVQFNTDRISLYQDNT 70
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ L IK V K+D G Y + N G T + +L
Sbjct: 71 G--RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 62.2 bits (151), Expect = 2e-12
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 50 IIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILL 108
P I +Q + V A+ G +TLEC + P I W K + + I
Sbjct: 108 TTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIR-WRKVLEPMPSTAE----IST 162
Query: 109 DNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
A L I + +D G Y+C ++N G ++Y
Sbjct: 163 SGA-----VLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198
Score = 57.2 bits (138), Expect = 1e-10
Identities = 20/98 (20%), Positives = 28/98 (28%), Gaps = 7/98 (7%)
Query: 48 GEIIAQVPPMIWIQNQLVGAMEGDQMTLECH-SEAYPKSINY-WTKENGEIIAQGSKYEP 105
G + P + V EG M L C +P ++Y W + K
Sbjct: 1 GPGSGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRF 60
Query: 106 ILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTD 143
+ N L I V D G Y C +
Sbjct: 61 VSQTNG-----NLYIANVEASDKGNYSCFVSSPSITKS 93
Score = 36.4 bits (84), Expect = 0.003
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 2 EKQGQNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEI 50
E+ + P I +Q + V A+ G +TLEC + P I W K +
Sbjct: 106 ERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIR-WRKVLEPM 154
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 63.2 bits (153), Expect = 2e-12
Identities = 23/181 (12%), Positives = 46/181 (25%), Gaps = 61/181 (33%)
Query: 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKE---------------------- 46
P + + V EG ++T++C + K
Sbjct: 100 APNVILTKPEV--SEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSF 157
Query: 47 --------NGEIIA---------QVPPMIWIQN--QLVGAMEGDQMTLECHSEAYPKSIN 87
G++I P + ++ E Q T C + P
Sbjct: 158 SCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPEL 217
Query: 88 YWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIK 147
K+ + G VT+ G Y C ++++ G+ +
Sbjct: 218 KCLKDGTFPLPIG------------------ESVTVTRDLEGTYLCRARSTQGEVTREVT 259
Query: 148 L 148
+
Sbjct: 260 V 260
Score = 40.8 bits (95), Expect = 1e-04
Identities = 22/148 (14%), Positives = 47/148 (31%), Gaps = 29/148 (19%)
Query: 1 MEKQGQNVPPMI-WIQNQL-------VGAMEGDQMTLECHSEAYPKSINYWTKENGEIIA 52
+ Q + P + + + V A + L C +S T + I +
Sbjct: 40 LALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQE--TLQTVTIYS 97
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAY 112
P + + V EG ++T++C + K T G + +
Sbjct: 98 FPAPNVILTKPEV--SEGTEVTVKCEAHPRAK----VTLNGVPAQPLGPRAQ-------- 143
Query: 113 KIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
L +KA + + ++ C + +
Sbjct: 144 -----LLLKATPEDNGRSFSCSATLEVA 166
Score = 37.3 bits (86), Expect = 0.002
Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 2/47 (4%)
Query: 7 NVPPMIWIQN--QLVGAMEGDQMTLECHSEAYPKSINYWTKENGEII 51
P + ++ E Q T C + P K+ +
Sbjct: 181 LYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL 227
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 63.4 bits (154), Expect = 3e-12
Identities = 29/201 (14%), Positives = 54/201 (26%), Gaps = 65/201 (32%)
Query: 2 EKQGQNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIA--------- 52
+ G P+ ++ + A GD + C + P + K ++
Sbjct: 205 DNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRH 264
Query: 53 -----------------------------------------QVPPMI--WIQNQLVGAME 69
P + +V +
Sbjct: 265 NRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIV-VKQ 323
Query: 70 GDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDF 128
G +T+ C P ++ W+ N + ++ G + D+ L IK V D
Sbjct: 324 GQDVTIPCKVTGLPAPNV-VWSH-NAKPLSGGRA---TVTDS------GLVIKGVKNGDK 372
Query: 129 GAYKCVSKNSLGDTDGSIKLY 149
G Y C + N GD +
Sbjct: 373 GYYGCRATNEHGDKYFETLVQ 393
Score = 59.5 bits (144), Expect = 6e-11
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY-WTKENGEIIAQGSKYEPILLDNA 111
P++ Q V E + LEC E + + Y W K +G+ + D
Sbjct: 4 DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKK-DGKSYNWQEHNAALRKDEG 62
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
L D G Y+C ++ G
Sbjct: 63 -----SLVFLRPQASDEGHYQCFAETPAG 86
Score = 53.4 bits (128), Expect = 7e-09
Identities = 33/190 (17%), Positives = 50/190 (26%), Gaps = 57/190 (30%)
Query: 7 NVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY-WTKEN------------------ 47
+ P++ Q V E + LEC E + + Y W K+
Sbjct: 4 DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 63
Query: 48 ----------------------GEIIAQ-------VPPMIWIQNQLVGAMEGDQMTLECH 78
G ++ + +EG L+C
Sbjct: 64 LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCV 123
Query: 79 -SEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHM--KLTIKAVTKQD---FGAYK 132
AYPK + W K + D L VTK+D Y
Sbjct: 124 LPNAYPKPLITWKKRLSGADPNA---DVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYV 180
Query: 133 CVSKNSLGDT 142
C +KN+ D
Sbjct: 181 CTAKNAAVDE 190
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 63.2 bits (153), Expect = 3e-12
Identities = 13/118 (11%), Positives = 35/118 (29%), Gaps = 7/118 (5%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAY 112
Q + + V +TL+ +A W ++ + Q D
Sbjct: 47 QSSGTV-YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH------FDLQN 99
Query: 113 KIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEE 170
+ + + I +T+ G Y ++ + + + + K + ++
Sbjct: 100 RGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQD 157
Score = 60.1 bits (145), Expect = 4e-11
Identities = 23/183 (12%), Positives = 46/183 (25%), Gaps = 51/183 (27%)
Query: 7 NVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE----------------- 49
+ ++ ME Q L C SE+ P+ I W + +
Sbjct: 138 RNTLLYTLRRPYFRKMEN-QDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK 196
Query: 50 ---------------------------IIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAY 82
I P + + G+ + + C +
Sbjct: 197 VLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFL--KVGEPLWIRCKAVHV 254
Query: 83 PKSINY-WTKENGEIIAQGSKYEPILLDNAYKIHM--KLTIKAVTKQDFGAYKCVSKNSL 139
W + + +G+ +E + + +V + D G Y C S
Sbjct: 255 NHGFGLTWEL-ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHP 313
Query: 140 GDT 142
+
Sbjct: 314 SQS 316
Score = 59.3 bits (143), Expect = 7e-11
Identities = 27/192 (14%), Positives = 44/192 (22%), Gaps = 59/192 (30%)
Query: 8 VPPMIWI--QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI--------------- 50
I ++ + ++ +AYP+ WT
Sbjct: 323 EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISK 382
Query: 51 -------------IA---------------QVPPMIWIQNQLVGAMEGDQMTLECHSEAY 82
A + P + E C S+ Y
Sbjct: 383 FCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV--------LAEASASQASCFSDGY 434
Query: 83 PKSINYWTKENG------EIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSK 136
P W K + E I +G + T+ KC +
Sbjct: 435 PLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAY 494
Query: 137 NSLGDTDGSIKL 148
NSLG + +I L
Sbjct: 495 NSLGTSCETILL 506
Score = 58.9 bits (142), Expect = 9e-11
Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 11/106 (10%)
Query: 46 ENGEIIAQVPPMIWI--QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKY 103
++ + I ++ + ++ +AYP+ WT
Sbjct: 315 QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF-----PC 369
Query: 104 EPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
E LDN Y ++ K G Y ++N L
Sbjct: 370 EQKGLDNGY----SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN 411
Score = 53.5 bits (128), Expect = 6e-09
Identities = 21/179 (11%), Positives = 47/179 (26%), Gaps = 57/179 (31%)
Query: 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI----------------- 50
+ + V +TL+ +A W ++ +
Sbjct: 48 SSGTV-YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMV 106
Query: 51 IAQV-----------------------------PPMIWIQNQLVGAMEGDQMTLECHSEA 81
I ++ + ++ ME Q L C SE+
Sbjct: 107 ILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMEN-QDALVCISES 165
Query: 82 YPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
P+ I W + + + + ++ +H + +C ++N LG
Sbjct: 166 VPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLH---------ELFGTDIRCCARNELG 215
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 59.0 bits (143), Expect = 4e-12
Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
P + ++ + + GD + L C +SIN W + +G + + ++ +
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRCRLRDDVQSIN-WLR-DGVQLVESNR---TRITGEE-- 61
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ ++ D G Y CV+ + G +
Sbjct: 62 ---VEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
Score = 33.2 bits (76), Expect = 0.011
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 6 QNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI 50
Q P + ++ + + GD + L C +SIN W ++ ++
Sbjct: 6 QAQPWGVPVEVESLLVHPGDLLQLRCRLRDDVQSIN-WLRDGVQL 49
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 58.8 bits (143), Expect = 4e-12
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 6/98 (6%)
Query: 52 AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLDN 110
++ PP + EG + + + PK + W + N + + + +
Sbjct: 2 SKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVV-SWLR-NRQPVRPDQRRFAEEAEG 59
Query: 111 AYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+L I A + D G Y C + N G +L
Sbjct: 60 GL---CRLRILAAERGDAGFYTCKAVNEYGARQCEARL 94
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 58.7 bits (142), Expect = 4e-12
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 12/100 (12%)
Query: 51 IAQVPPMIWIQ-NQLVGAMEGDQMTLECHSEA-YPKSINYWTKENGEIIAQGSKYEPILL 108
P M+ ++ + G +T C +++ P WT+ + + + +
Sbjct: 5 APSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA-----MD 59
Query: 109 DNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
N LTI+ V D G Y C N G+ L
Sbjct: 60 FNGI-----LTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 62.8 bits (153), Expect = 5e-12
Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 18/147 (12%)
Query: 11 MIWIQNQLVGA-MEGDQMTLECHSEAYP-----KSINYWTKEN--GEIIAQVPPMIWIQN 62
++W+ + Q T C A P K + + + +
Sbjct: 338 LLWVFRRRWRLNFNRQQPT--C---ATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKA 392
Query: 63 QLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKA 122
Q V EG + C ++ P W +++ S + + L ++
Sbjct: 393 QQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT-----LEVRY 447
Query: 123 VTKQDFGAYKCVSKNSLGDTDGSIKLY 149
QD G Y C++ N+ G+ L+
Sbjct: 448 AQVQDNGTYLCIAANAGGNDSMPAHLH 474
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 62.5 bits (151), Expect = 5e-12
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 5/101 (4%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSIN----YWTKENGEIIAQGSKYEPILL 108
Q I + + G+ + C + + ++ W +G II IL
Sbjct: 226 QDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILT 285
Query: 109 DNAYKIHMKLTIKAVTKQDFGA-YKCVSKNSLGDTDGSIKL 148
+ L + VT++ G Y C N D + +
Sbjct: 286 SSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326
Score = 53.7 bits (128), Expect = 6e-09
Identities = 21/111 (18%), Positives = 32/111 (28%), Gaps = 9/111 (8%)
Query: 39 SINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY-WTKENGEII 97
+ + PP + +G + + L C N W K N E+I
Sbjct: 112 KNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELI 171
Query: 98 AQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
G+KY + L I +D G Y C I +
Sbjct: 172 IDGTKYS--------QSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVV 214
Score = 40.2 bits (93), Expect = 2e-04
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 4/82 (4%)
Query: 67 AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHM-KLTIKAVTK 125
A G+ + +C + + ++ + K ++ L I T
Sbjct: 41 AALGEPFSAKCPPIEDSLLSHRYNDKDNVV--NWEKIGKTRRPLNRRVKNGDLWIANYTS 98
Query: 126 QDFGA-YKCVSKNSLGDTDGSI 146
D Y C GD I
Sbjct: 99 NDSHRRYLCTVTTKNGDCVQGI 120
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 62.8 bits (153), Expect = 5e-12
Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 30/146 (20%)
Query: 13 WIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQV--------PPMIWIQNQL 64
W++ CH+ P + G + +V P I +
Sbjct: 314 WLREY---IPTNSTCCGRCHA---PMHMR------GRYLVEVDQASFQCSAPFIMDAPRD 361
Query: 65 VGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYE--PILLDNAYKIHMKLTIKA 122
+ EG L+C + S+ W NG +++ S++ +L D L
Sbjct: 362 LNISEGRMAELKCRTPPMS-SV-KWLLPNGTVLSHASRHPRISVLNDGT------LNFSH 413
Query: 123 VTKQDFGAYKCVSKNSLGDTDGSIKL 148
V D G Y C+ N G+++ S L
Sbjct: 414 VLLSDTGVYTCMVTNVAGNSNASAYL 439
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 62.2 bits (151), Expect = 5e-12
Identities = 22/122 (18%), Positives = 35/122 (28%), Gaps = 4/122 (3%)
Query: 27 MTLECHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSI 86
+ L + + K+ ++ +V EG + L C+ P
Sbjct: 194 VDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE 253
Query: 87 NYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSI 146
W K N + +A TI V+ D G Y V KN G
Sbjct: 254 VSWLK-NEKALASDDHCNLKFEAGRT---AYFTINGVSTADSGKYGLVVKNKYGSETSDF 309
Query: 147 KL 148
+
Sbjct: 310 TV 311
Score = 57.6 bits (139), Expect = 2e-10
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 9/112 (8%)
Query: 54 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSIN-YWTKENGEIIAQGSKYEPILLDNAY 112
P ++ + L+C K + W K + I+ K++ D
Sbjct: 6 TGPHF-VEYLSWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISVDEKHD--FKDGIC 61
Query: 113 KIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKV 164
L I +K+D G Y+ + K+ G +KL + K+ E KK+
Sbjct: 62 T----LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKI 109
Score = 49.5 bits (118), Expect = 1e-07
Identities = 27/242 (11%), Positives = 58/242 (23%), Gaps = 65/242 (26%)
Query: 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSIN-YWTKENGEIIA-------------- 52
P ++ + L+C K + W K+ EI
Sbjct: 6 TGPHF-VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLL 64
Query: 53 -------------------------------QVPPMIWIQNQLVGAMEGDQMTLECHSEA 81
+ + ++ A+ + ++ +E
Sbjct: 65 ITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEG 124
Query: 82 ----------YPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAY 131
W+ NG I + + + L I T D G Y
Sbjct: 125 IQLYSFVTYYVEDLKVNWSH-NGSAIRYSDRVKTGVTGEQIW----LQINEPTPNDKGKY 179
Query: 132 KCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+ ++ L G+ + E ++ + E K + + ++E
Sbjct: 180 VMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAE---KNRARVLGGLPDVVTIQE 236
Query: 192 KK 193
K
Sbjct: 237 GK 238
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 61.7 bits (149), Expect = 7e-12
Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 8/109 (7%)
Query: 48 GEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI-------IAQG 100
E P ++ N+ + G Q+ L C+ I YW I
Sbjct: 202 EENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDY 261
Query: 101 SKYEPILLDNAYKIHMKLTIKAVTKQDF-GAYKCVSKNSLGDTDGSIKL 148
E + L I + + + + C +KN+ G I+L
Sbjct: 262 YSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310
Score = 49.3 bits (117), Expect = 2e-07
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 12/90 (13%)
Query: 63 QLVGAMEGDQMTLECHSEAYPKSINY-WTKENGEIIAQGSKYEPILLDNAYKIHMK---L 118
++ + + C W K++ + P+ + A +IH L
Sbjct: 13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKT--------PVSTEQASRIHQHKEKL 64
Query: 119 TIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+D G Y CV +NS I
Sbjct: 65 WFVPAKVEDSGHYYCVVRNSSYCLRIKISA 94
Score = 36.6 bits (84), Expect = 0.003
Identities = 13/107 (12%), Positives = 31/107 (28%), Gaps = 16/107 (14%)
Query: 49 EIIAQVPPMIWIQNQLVG--AMEGDQMTLECHSEAYPKSINY------WTKENGEIIAQG 100
+ + P + + + L C + K+ N W K+ ++
Sbjct: 95 KFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN 154
Query: 101 SKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIK 147
+ + +L + V ++ G Y C + + I
Sbjct: 155 IHFSGV--------KDRLIVMNVAEKHRGNYTCHASYTYLGKQYPIT 193
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 62.1 bits (151), Expect = 7e-12
Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 27/145 (18%)
Query: 13 WIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQV--------PPMIWIQNQL 64
WI++ A C P ++ G I ++ P+I
Sbjct: 303 WIKDM---APSNTACCARC---NTPPNLK------GRYIGELDQNYFTCYAPVIVEPPAD 350
Query: 65 VGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPI-LLDNAYKIHMKLTIKAV 123
+ EG L+C + S+ W NG ++ G+ I +L + L V
Sbjct: 351 LNVTEGMAAELKCRASTSLTSV-SWITPNGTVMTHGAYKVRIAVLSDGT-----LNFTNV 404
Query: 124 TKQDFGAYKCVSKNSLGDTDGSIKL 148
T QD G Y C+ NS+G+T S L
Sbjct: 405 TVQDTGMYTCMVSNSVGNTTASATL 429
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 60.5 bits (147), Expect = 8e-12
Identities = 33/195 (16%), Positives = 54/195 (27%), Gaps = 63/195 (32%)
Query: 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI------------------ 50
P Q V +EG T E H +P W ++ I
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 51 --IAQV--------------------------------PPMI--WIQNQLVGAMEGDQMT 74
I V PP +Q+ V +G Q+
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTV--RQGSQVR 122
Query: 75 LECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKC 133
L+ P + + + +G I ++ + Y L I +D G Y
Sbjct: 123 LQVRVTGIPTPVV-KFYR-DGAEIQSSLDFQISQEGDLYS----LLIAEAYPEDSGTYSV 176
Query: 134 VSKNSLGDTDGSIKL 148
+ NS+G + +L
Sbjct: 177 NATNSVGRATSTAEL 191
Score = 53.2 bits (128), Expect = 3e-09
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
P Q V +EG T E H +P W ++ I I +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG--- 61
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
KLTI AVTK + G Y + N G + +L
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELL 96
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 61.7 bits (149), Expect = 8e-12
Identities = 31/184 (16%), Positives = 47/184 (25%), Gaps = 46/184 (25%)
Query: 10 PMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIA----------------- 52
P + +Q GD + L C E W E A
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 218
Query: 53 -------------------------QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSIN 87
QV QL A+E + + P
Sbjct: 219 VTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSL 278
Query: 88 YWTKENGEIIAQGSKYEPILLDNAYKIHMK---LTIKAVTKQDFGAYKCVSKNSLGDTDG 144
W NG ++ + S L+ A ++ L + T + G Y ++ N G
Sbjct: 279 RWLF-NGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA 337
Query: 145 SIKL 148
SI
Sbjct: 338 SIMA 341
Score = 57.8 bits (139), Expect = 2e-10
Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 15/140 (10%)
Query: 11 MIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQLVGAMEG 70
+ W+Q + G P + P + +Q G
Sbjct: 121 LRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNAS-------CGVPTLKVQVPNASVDVG 173
Query: 71 DQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVT-KQDFG 129
D + L C E W E A K + LT+ VT +
Sbjct: 174 DDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLG-------LTLANVTSDLNRK 226
Query: 130 AYKCVSKNSLGDTDGSIKLY 149
C ++N +G + S+++
Sbjct: 227 NVTCWAENDVGRAEVSVQVN 246
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 58.1 bits (141), Expect = 9e-12
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 54 VPPMI--WIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLDN 110
P + V EG ++C P + W +G+ + S ++ ++ +N
Sbjct: 8 FRPHFLQAPGDLTV--QEGKLCRMDCKVSGLPTPDL-SWQL-DGKPVRPDSAHKMLVREN 63
Query: 111 AYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L I+ VT +D G Y C++ N G S++L
Sbjct: 64 G---VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLEL 98
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 60.7 bits (147), Expect = 9e-12
Identities = 26/188 (13%), Positives = 41/188 (21%), Gaps = 70/188 (37%)
Query: 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEI---------IAQV--- 54
I + + + G + L C + +P W K N EI V
Sbjct: 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQ-WFKMNKEIPNGNTSELIFNAVHVK 75
Query: 55 ------------------------------------------PPMIWIQNQLVGAMEGDQ 72
I ++ M G
Sbjct: 76 DAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGST 135
Query: 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYK 132
+ L+C + P W K N + +K + V + G Y
Sbjct: 136 LVLQCVAVGSPIPHYQWFK-NELPLTHETKK-------------LYMVPYVDLEHQGTYW 181
Query: 133 CVSKNSLG 140
C N
Sbjct: 182 CHVYNDRD 189
Score = 56.8 bits (137), Expect = 2e-10
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 16/94 (17%)
Query: 49 EIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPIL 107
+ I + + + G + L C + +P W K N EI +
Sbjct: 12 SGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQ-WFKMNKEIPNGNTS----- 65
Query: 108 LDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGD 141
+L AV +D G Y C N+
Sbjct: 66 ---------ELIFNAVHVKDAGFYVCRVNNNFTF 90
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 60.6 bits (146), Expect = 9e-12
Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 5/106 (4%)
Query: 49 EIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWT-----KENGEIIAQGSKY 103
+ ++ ++ + + G+++ L C + + ++
Sbjct: 99 VVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 158
Query: 104 EPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
+ K LTI VT+ D G Y C + + L S +
Sbjct: 159 KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 204
Score = 36.3 bits (83), Expect = 0.003
Identities = 8/84 (9%), Positives = 19/84 (22%), Gaps = 8/84 (9%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECH-SEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYK 113
+ + + + C S + + G++ +
Sbjct: 9 SVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRIS-------WD 61
Query: 114 IHMKLTIKAVTKQDFGAYKCVSKN 137
TI + G C +K
Sbjct: 62 SKKGFTIPSYMISYAGMVFCEAKI 85
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 57.3 bits (139), Expect = 1e-11
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 5/95 (5%)
Query: 54 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYK 113
+ P I ++ + G LE P WT A + +
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTV-GDSGAALAPELLVDAKSS--- 56
Query: 114 IHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ + + D G YK KN LG+ + ++
Sbjct: 57 -TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 61.4 bits (148), Expect = 1e-11
Identities = 22/185 (11%), Positives = 46/185 (24%), Gaps = 63/185 (34%)
Query: 7 NVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIA-------------- 52
P + EG ++T++C EA+P++ + +
Sbjct: 281 YSFPAPNVILTKPEVSEGTEVTVKC--EAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDN 338
Query: 53 ---------------------------QVPPMIWIQN--QLVGAMEGDQMTLECHSEAYP 83
P + ++ E Q T C + P
Sbjct: 339 GRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNP 398
Query: 84 KSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTD 143
K+ + G VT+ G Y C ++++ G+
Sbjct: 399 LPELKCLKDGTFPLPIG------------------ESVTVTRDLEGTYLCRARSTQGEVT 440
Query: 144 GSIKL 148
+ +
Sbjct: 441 REVTV 445
Score = 44.1 bits (103), Expect = 1e-05
Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 11/95 (11%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEA---YPKSINYWTKENGEIIAQGSKYEPILLDNA 111
P + + G +TL C E + E+ K EP + + A
Sbjct: 86 PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKEL-----KREPAVGEPA 140
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSI 146
T+ + C ++ L +
Sbjct: 141 EVT---TTVLVRRDHHGANFSCRTELDLRPQGLEL 172
Score = 43.7 bits (102), Expect = 1e-05
Identities = 12/92 (13%), Positives = 32/92 (34%), Gaps = 17/92 (18%)
Query: 49 EIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILL 108
+ P + EG ++T++C EA+P++ + + +
Sbjct: 277 TVTIYSFPAPNVILTKPEVSEGTEVTVKC--EAHPRAKVTLNGVPAQPLGPRA------- 327
Query: 109 DNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
+L +KA + + ++ C + +
Sbjct: 328 --------QLLLKATPEDNGRSFSCSATLEVA 351
Score = 32.1 bits (72), Expect = 0.091
Identities = 10/77 (12%), Positives = 21/77 (27%), Gaps = 5/77 (6%)
Query: 9 PPMIWIQNQLVGAMEGDQMTLECHSEA---YPKSINYWTKENGEIIAQ--VPPMIWIQNQ 63
P + + G +TL C E + E+ + V +
Sbjct: 86 PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTT 145
Query: 64 LVGAMEGDQMTLECHSE 80
++ + C +E
Sbjct: 146 VLVRRDHHGANFSCRTE 162
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 60.3 bits (145), Expect = 2e-11
Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 16/110 (14%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENG----------EIIAQGSKYE 104
+ ++V EG+ +T+ C + W + +A +++
Sbjct: 136 NNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFG 195
Query: 105 PILLDNAYKIHMK------LTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ L I+A D G C G+ D
Sbjct: 196 ITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245
Score = 34.5 bits (78), Expect = 0.012
Identities = 18/131 (13%), Positives = 29/131 (22%), Gaps = 27/131 (20%)
Query: 17 QLVGAMEGDQMTLECH----SEAYPKSINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQ 72
V G + L C ++ P I W K + Q G +
Sbjct: 10 TEVEVHAGGTVELPCSYQLANDTQPPVI-SWLKGASPDRSTKVFKGNYNWQGEGLGFVES 68
Query: 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYK 132
+ + + + L + V QD G Y
Sbjct: 69 DSYKESFGDFLGRASVANLAAP----------------------TLRLTHVHPQDGGRYW 106
Query: 133 CVSKNSLGDTD 143
C T+
Sbjct: 107 CQVAQWSIRTE 117
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 57.0 bits (138), Expect = 2e-11
Identities = 15/87 (17%), Positives = 24/87 (27%), Gaps = 16/87 (18%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLDNAYK 113
I ++ M G + L+C + P W K N + +K
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQ-WFK-NELPLTHETK----------- 49
Query: 114 IHMKLTIKAVTKQDFGAYKCVSKNSLG 140
+ V + G Y C N
Sbjct: 50 --KLYMVPYVDLEHQGTYWCHVYNDRD 74
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 56.9 bits (138), Expect = 3e-11
Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 19/104 (18%)
Query: 54 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLDNAY 112
+PP I + EG +T+ C P + W+ I
Sbjct: 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVT-WSCGG----------RKIHSQEQG 52
Query: 113 KIHMK-------LTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
+ H++ L I V KQD G Y N G ++ ++
Sbjct: 53 RFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH 96
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 56.6 bits (137), Expect = 3e-11
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 55 PPMIWI--QNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLDNA 111
P + ++ + EG +T C PK I YW K+ +I + Y + +
Sbjct: 8 APFFEMKLKHYKI--FEGMPVTFTCRVAGNPKPKI-YWFKDGKQISPKSDHY--TIQRDL 62
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
L A T D G Y ++ N G
Sbjct: 63 DGTC-SLHTTASTLDDDGNYTIMAANPQG 90
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 58.7 bits (142), Expect = 4e-11
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 49 EIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPIL 107
+ I + P I + QL T+ C + P I W K + + + I
Sbjct: 102 DQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEI-TWFK-DFLPVDTSNNNGRIK 159
Query: 108 LDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDT 142
+ I L I+ + D G Y+CV+ NS G
Sbjct: 160 QLRSESIG-ALQIEQSEESDQGKYECVATNSAGTR 193
Score = 54.1 bits (130), Expect = 2e-09
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLDNA 111
+ PP + G + C + P+ I W K G+ ++ D +
Sbjct: 4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKI-VWNK-KGKKVSNQRFEVIEFDDGS 61
Query: 112 YKIHMKLTIKAV-TKQDFGAYKCVSKNSLGDTDGSIKL 148
+ L I+ + T +D Y+CV+ N++G+ S +L
Sbjct: 62 GSV---LRIQPLRTPRDEAIYECVASNNVGEISVSTRL 96
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 59.7 bits (144), Expect = 5e-11
Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 11/106 (10%)
Query: 46 ENGEIIAQVPPMIWI--QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKY 103
++ + I ++ + ++ +AYP+ WT
Sbjct: 315 QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC----- 369
Query: 104 EPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
E LDN Y ++ K G Y ++N L
Sbjct: 370 EQKGLDNGYS----ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN 411
Score = 59.7 bits (144), Expect = 5e-11
Identities = 12/117 (10%), Positives = 33/117 (28%), Gaps = 7/117 (5%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAY 112
Q + + V +TL+ +A W ++ + Q ++
Sbjct: 47 QSSGTV-YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQ-PHFDLQNRGVVS 104
Query: 113 KIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKE 169
+ I +T+ G Y ++ + + + + K + +
Sbjct: 105 -----MVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQ 156
Score = 57.4 bits (138), Expect = 3e-10
Identities = 23/181 (12%), Positives = 47/181 (25%), Gaps = 51/181 (28%)
Query: 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGE------------------- 49
+ ++ ME Q L C SE+ P+ I W + +
Sbjct: 140 TLLYTLRRPYFRKMEN-QDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL 198
Query: 50 -------------------------IIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK 84
I P + + G+ + + C +
Sbjct: 199 HELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLK--VGEPLWIRCKAVHVNH 256
Query: 85 SINY-WTKENGEIIAQGSKYEPILLDNAYKIH--MKLTIKAVTKQDFGAYKCVSKNSLGD 141
W + + +G+ +E + + + +V + D G Y C S
Sbjct: 257 GFGLTWEL-ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ 315
Query: 142 T 142
+
Sbjct: 316 S 316
Score = 53.9 bits (129), Expect = 4e-09
Identities = 22/205 (10%), Positives = 53/205 (25%), Gaps = 57/205 (27%)
Query: 7 NVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI---------------- 50
+ + V +TL+ +A W ++ +
Sbjct: 47 QSSGTV-YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSM 105
Query: 51 -IAQV-----------------------------PPMIWIQNQLVGAMEGDQMTLECHSE 80
I ++ + ++ ME Q L C SE
Sbjct: 106 VILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMEN-QDALVCISE 164
Query: 81 AYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
+ P+ I W + + + + ++ + + D +C ++N LG
Sbjct: 165 SVPEPIVEWVLCDSQGESCKEESPAVVKKEE------KVLHELFGTD---IRCCARNELG 215
Query: 141 DTDGSIKLYGKKKKKKKKEKEKKVK 165
+ + + + +K
Sbjct: 216 RECTRLFTIDLNQTPQTTLPQLFLK 240
Score = 35.8 bits (82), Expect = 0.006
Identities = 6/45 (13%), Positives = 13/45 (28%), Gaps = 2/45 (4%)
Query: 8 VPPMIWI--QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI 50
I ++ + ++ +AYP+ WT
Sbjct: 323 EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF 367
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 57.6 bits (139), Expect = 5e-11
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 4/128 (3%)
Query: 45 KENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYE 104
+E E V P + +EG +C E YP W K + + + ++
Sbjct: 31 EEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFK-DDNPVKESRHFQ 89
Query: 105 PILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKV 164
I D LTI V D Y C + NSLG+ + +L + K+ + + +
Sbjct: 90 -IDYDEEGNCS--LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEGE 146
Query: 165 KKKKEEGK 172
+ ++EE +
Sbjct: 147 EDEEEEEE 154
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 58.3 bits (141), Expect = 6e-11
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 8/103 (7%)
Query: 48 GEIIAQVPPMIWI-QNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEP 105
P + EG+Q+ + C AYP +I+ W + +G+++ S Y
Sbjct: 12 PRGSHMYAPKLQGPVAVYT--WEGNQVNITCEVFAYPSATIS-WFR-DGQLL-PSSNYSN 66
Query: 106 ILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
I + N L + ++ DFG Y C + N +G L
Sbjct: 67 IKIYNTPSASY-LEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 58.5 bits (141), Expect = 6e-11
Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 13/127 (10%)
Query: 25 DQMTLECHSEAYPKSINYWTKENGEIIAQV--PPMIWIQNQLVGAMEGDQMTLECHSEAY 82
D C I+Y + I +V P Q LV + L C +E Y
Sbjct: 91 DAGVYRCM-------ISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGY 143
Query: 83 PKSINYWTKENGEIIAQGSKYEPILL-DNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGD 141
PK+ WT + ++++ + + + + L I + C + +
Sbjct: 144 PKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRIN---TTTNEIFYCTFRRLDPE 200
Query: 142 TDGSIKL 148
+ + +L
Sbjct: 201 ENHTAEL 207
Score = 43.5 bits (102), Expect = 1e-05
Identities = 13/57 (22%), Positives = 23/57 (40%)
Query: 7 NVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQ 63
N P Q LV + L C +E YPK+ WT + ++++ + +
Sbjct: 114 NAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKRE 170
Score = 39.6 bits (92), Expect = 2e-04
Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 24/100 (24%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECH----SEAYPKSIN-YWTKENGEII---------- 97
VP L G MT+EC + ++ YW E+ II
Sbjct: 5 TVPK------DLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLK 58
Query: 98 AQGSKYEP---ILLDNAYKIHMKLTIKAVTKQDFGAYKCV 134
Q S Y +L D + L I V QD G Y+C+
Sbjct: 59 VQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCM 98
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 59.2 bits (143), Expect = 6e-11
Identities = 28/196 (14%), Positives = 46/196 (23%), Gaps = 64/196 (32%)
Query: 2 EKQGQNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIA--------- 52
E + P + + + M ++L C ++ +P W K
Sbjct: 205 EPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDR 264
Query: 53 ----------------------------------------QVPPMIWIQNQLVGAMEGDQ 72
P I G
Sbjct: 265 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRP 324
Query: 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYK 132
C P W K +G+ I L I++V K+D G Y+
Sbjct: 325 AVFTCQYTGNPIKTVSWMK-DGKAIGHSES--------------VLRIESVKKEDKGMYQ 369
Query: 133 CVSKNSLGDTDGSIKL 148
C +N + S +L
Sbjct: 370 CFVRNDRESAEASAEL 385
Score = 55.3 bits (133), Expect = 1e-09
Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 1/89 (1%)
Query: 53 QVPPMIWIQ-NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNA 111
Q P+ + + +EC + P W + +G + I D
Sbjct: 1 QKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK 60
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
+ Y C+++N G
Sbjct: 61 LVFPPFRAEDYRQEVHAQVYACLARNQFG 89
Score = 48.4 bits (115), Expect = 3e-07
Identities = 23/193 (11%), Positives = 53/193 (27%), Gaps = 65/193 (33%)
Query: 8 VPPMIWIQ-NQLVGAMEGDQMTLECHSEAYPKSINYWTKENG------------------ 48
P+ + + +EC + P W + +G
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 49 -----------------------------------EIIAQVPPMIWIQNQLVGAMEGDQM 73
+ A V + G+
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSA 121
Query: 74 TLECHSEAY---PKSINYWTKENGEIIAQGSKYEP--ILLDNAYKIHMKLTIKAVTKQD- 127
++C ++ + W + E G++Y+ ++L + +L I+ V +D
Sbjct: 122 VIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG-----ELHIREVGPEDG 176
Query: 128 FGAYKCVSKNSLG 140
+ +Y+C +K+ L
Sbjct: 177 YKSYQCRTKHRLT 189
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 55.8 bits (135), Expect = 6e-11
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 52 AQVPPMI--WIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILL 108
A PP +N + EG ++ P + W NG + ++ I+
Sbjct: 2 AMGPPRFIQVPENMSI--DEGRFCRMDFKVSGLPAPDV-SWYL-NGRTVQSDDLHKMIVS 57
Query: 109 DNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ L + V D GAY CV+KN G+ +++L
Sbjct: 58 EKG---LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQL 94
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 55.8 bits (135), Expect = 7e-11
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 67 AMEGDQMTLECHSEAYPKSINY-WTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTK 125
EG + C E Y +S W + KYE D L +K +TK
Sbjct: 13 GEEGGHVKYVCKIENYDQSTQVTWYF-GVRQLENSEKYEITYEDGVAI----LYVKDITK 67
Query: 126 QDFGAYKCVSKNSLGDTDGSIKLY 149
D G Y+C N G+ +L+
Sbjct: 68 LDDGTYRCKVVNDYGEDSSYAELF 91
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 55.5 bits (134), Expect = 7e-11
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 16/96 (16%)
Query: 51 IAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLD 109
+ ++ + G +TL C A P I +W K+ + S
Sbjct: 6 SGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQI-HWMKDGVPLPLPPSPV------ 58
Query: 110 NAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGS 145
L + + QD G Y CV+ +S S
Sbjct: 59 --------LILPEIGPQDQGTYSCVATHSSHGPQES 86
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 57.9 bits (140), Expect = 7e-11
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 9/91 (9%)
Query: 51 IAQVPPMIWIQNQLVGAMEGDQMTLECH-SEAYPKSINYWTKENGEIIAQGSKYEPILLD 109
+A + V G+ +EC +P+ W K +G + + I +
Sbjct: 107 VAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKK-DGSPLDDKDER--ITIR 163
Query: 110 NAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
KL I K D G Y CV N +G
Sbjct: 164 GG-----KLMITYTRKSDAGKYVCVGTNMVG 189
Score = 49.8 bits (119), Expect = 7e-08
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEP----IL 107
PP I + +G+ TL C +E P +I W K GE + +L
Sbjct: 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTI-EWYK-GGERVETDKDDPRSHRMLL 64
Query: 108 LDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDT 142
+ + ++ D G Y CV++N LG+
Sbjct: 65 PSGSLFFLR-IVHGRKSRPDEGVYVCVARNYLGEA 98
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 55.8 bits (135), Expect = 7e-11
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 11/99 (11%)
Query: 53 QVPPMI--WIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLD 109
P+I +Q+ V + P+ + WTK +G+ I QG KY+ + D
Sbjct: 4 SSKPVIVTGLQDTTV--SSDSVAKFAVKATGEPRPTA-IWTK-DGKAITQGGKYK-LSED 58
Query: 110 NAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L I D G Y C KNS G S KL
Sbjct: 59 KGG---FFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 55.4 bits (134), Expect = 1e-10
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 14/105 (13%)
Query: 47 NGEIIAQVPPMI--WIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKY 103
+G +V P +++ V +EG L+C P I W I Q ++
Sbjct: 3 SGSSGMEVAPSFSSVLKDCAV--IEGQDFVLQCSVRGTPVPRI-TWLLNGQPI--QYARS 57
Query: 104 EPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
A +L I+ +D G Y C+++N+LG S +
Sbjct: 58 T-CEAGVA-----ELHIQDALPEDHGTYTCLAENALGQVSCSAWV 96
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 58.3 bits (141), Expect = 1e-10
Identities = 32/190 (16%), Positives = 50/190 (26%), Gaps = 63/190 (33%)
Query: 8 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKEN-------------------- 47
PP + + + G + C + PK W K+
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 48 -----------------------GEIIAQ-------------VPPMIWIQNQLVGAMEGD 71
GEI P I + QL
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTR 124
Query: 72 QMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPI-LLDNAYKIHMKLTIKAVTKQDFGA 130
T+ C + P W K + + + I L + L I++ + D G
Sbjct: 125 TATMLCAASGNPDPEITWFK-DFLPVDPSASNGRIKQLRSG-----ALQIESSEETDQGK 178
Query: 131 YKCVSKNSLG 140
Y+CV+ NS G
Sbjct: 179 YECVATNSAG 188
Score = 57.9 bits (140), Expect = 2e-10
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAY 112
+ PP + + + G + C + PK W K G+ + ++A
Sbjct: 4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNK-KGKKVNSQRFETIEFDESAG 62
Query: 113 KIHMKLTIKAV-TKQDFGAYKCVSKNSLGDTDGSIKLY 149
+ L I+ + T +D Y+CV++NS+G+ KL
Sbjct: 63 AV---LRIQPLRTPRDENVYECVAQNSVGEITVHAKLT 97
Score = 55.6 bits (134), Expect = 9e-10
Identities = 26/199 (13%), Positives = 47/199 (23%), Gaps = 62/199 (31%)
Query: 1 MEKQGQNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI---------- 50
E Q + P I + QL T+ C + P W K+ +
Sbjct: 100 REDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK 159
Query: 51 --------IAQV---------------------------------PPMIWIQNQLVGAME 69
I P I M
Sbjct: 160 QLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMP 219
Query: 70 GDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFG 129
G + + C + P W + ++ + ++ +D
Sbjct: 220 GGNVNITCVAVGSPMPYVKWMQGAEDLT-----------PEDDMPVGRNVLELTDVKDSA 268
Query: 130 AYKCVSKNSLGDTDGSIKL 148
Y CV+ +SLG + ++
Sbjct: 269 NYTCVAMSSLGVIEAVAQI 287
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 55.8 bits (134), Expect = 1e-10
Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 10/106 (9%)
Query: 52 AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQ------GSKYE 104
G + L C + P I W E G++ +
Sbjct: 18 GSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEI-QWWFEGQGPNDICSQLWDGARLD 76
Query: 105 PILLDNAYKIHMK--LTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ + Y H ++I + ++D G Y+C + N +
Sbjct: 77 RVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAP 122
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 55.1 bits (132), Expect = 1e-10
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 56 PMIWIQNQLVGAMEGDQMTLECHSEAYPKS-INY-WTKENGEII-AQGSKYEPILLDNAY 112
P I +Q + A+ G ++ C + + S + + W +N + A+ Y +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 113 KIHMK--LTIKAVTKQDFGAYKCVSKNSLG 140
+ L ++ V G Y+CV N G
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFG 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 57.9 bits (140), Expect = 2e-10
Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 16/136 (11%)
Query: 13 WIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQ 72
W QL M+ + L C K ++ + + A GD
Sbjct: 214 WQYRQLSSVMDFQE-DLYCMH---SKKLHNIFSLD-FFNCSEYKESAWE-----AHLGDT 263
Query: 73 MTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYK 132
+T+ C ++ + + + N ++++QGS + + L K V +D G Y
Sbjct: 264 LTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD------LFFKKVQVEDGGVYT 317
Query: 133 CVSKNSLGDTDGSIKL 148
C + + S++L
Sbjct: 318 CYAMGETFNETLSVEL 333
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 57.1 bits (138), Expect = 2e-10
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 51 IAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDN 110
P+I G + + C + P YW K N + + L +
Sbjct: 106 TPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIK-NQTKVDMSNPR--YSLKD 162
Query: 111 AYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
L I+ ++D G Y+CV++NS+G
Sbjct: 163 G-----FLQIENSREEDQGKYECVAENSMG 187
Score = 54.0 bits (130), Expect = 2e-09
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAY 112
PP I + Q G G + C + P W K ++ S+Y +
Sbjct: 4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 113 KIHMKLTIKAVTK-QDFGAYKCVSKNSLGDT 142
I L I+ V +D Y+CV++N +GD
Sbjct: 64 SI---LRIEPVRAGRDDAPYECVAENGVGDA 91
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 56.9 bits (137), Expect = 2e-10
Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 9/128 (7%)
Query: 25 DQMTLECHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK 84
+ T+ + + K + E I + P ++ + L+C K
Sbjct: 87 NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF-VEYLSWEVTGECNVLLKCKVANIKK 145
Query: 85 SIN-YWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTD 143
+ W K + I+ K++ L I +K+D G Y+ + K+ G
Sbjct: 146 ETHIVWYK-DEREISVDEKHDFK------DGICTLLITEFSKKDAGIYEVILKDDRGKDK 198
Query: 144 GSIKLYGK 151
+KL +
Sbjct: 199 SRLKLVDE 206
Score = 49.5 bits (118), Expect = 6e-08
Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 67 AMEGDQMTLECHSEA-YPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTK 125
+E Q+ +E + + N + I +G KY+ + +D I ++ ++ +
Sbjct: 14 ILEKGQVRFWMQAEKLSGNAKVNYIF-NEKEIFEGPKYK-MHIDRNTGII-EMFMEKLQD 70
Query: 126 QDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKE 169
+D G Y ++ ++ L G KK +KE E + ++
Sbjct: 71 EDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIR 114
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 57.3 bits (138), Expect = 2e-10
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 59 WIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLDNAYKIHMK 117
+ +L+ + + C + P SI W K NG + I L +
Sbjct: 19 RMDKKLLAVPAANTVRFRCPAAGNPTPSI-SWLK-NGREFRGEHRIGGIKLRHQ---QWS 73
Query: 118 LTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L +++V D G Y CV +N G + L
Sbjct: 74 LVMESVVPSDRGNYTCVVENKFGSIRQTYTL 104
Score = 56.9 bits (137), Expect = 2e-10
Identities = 29/197 (14%), Positives = 54/197 (27%), Gaps = 62/197 (31%)
Query: 13 WIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTK-------------------------- 45
+ +L+ + + C + P SI W K
Sbjct: 19 RMDKKLLAVPAANTVRFRCPAAGNPTPSI-SWLKNGREFRGEHRIGGIKLRHQQWSLVME 77
Query: 46 --------------EN--GEIIAQV-----------PPMIWIQNQLVGAMEGDQMTLECH 78
EN G I P + A+ G + C
Sbjct: 78 SVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCK 137
Query: 79 SEAYPKSINYWTKENG----EIIAQGSKYEPILLDNAYKIHM---KLTIKAVTKQDFGAY 131
+ + W K ++ G+ Y +L + +L + V+++D G Y
Sbjct: 138 VYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEY 197
Query: 132 KCVSKNSLGDTDGSIKL 148
C + N +G + + L
Sbjct: 198 LCRATNFIGVAEKAFWL 214
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 56.0 bits (135), Expect = 2e-10
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
+ + +G + L C E + W K+ + Y P+ +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNSLG 140
L++K+V + D G Y C ++
Sbjct: 62 ---LSLKSVERSDAGRYWCQVEDGGE 84
Score = 50.6 bits (121), Expect = 2e-08
Identities = 15/186 (8%), Positives = 35/186 (18%), Gaps = 65/186 (34%)
Query: 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI------------------ 50
+ + +G + L C E + W K+ +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 51 ----------------IA----------------QVPPMIWIQNQLVGAMEGDQMTLECH 78
+ P ++ + + L C
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCE 121
Query: 79 SEAYPKSINY-WTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKN 137
+ P+ + W + I + + + C + N
Sbjct: 122 AVGPPEPVTIVWWR-GTTKIGGPAP-------------SPSVLNVTGVTQSTMFSCEAHN 167
Query: 138 SLGDTD 143
G
Sbjct: 168 LKGLAS 173
Score = 33.6 bits (77), Expect = 0.021
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 2/52 (3%)
Query: 7 NVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY-WTKENGEIIAQVPPM 57
P ++ + + L C + P+ + W + I P
Sbjct: 96 EGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWR-GTTKIGGPAPS 146
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 56.4 bits (136), Expect = 3e-10
Identities = 21/94 (22%), Positives = 30/94 (31%), Gaps = 4/94 (4%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
++ +V EG + L C+ P W K N + +AQ
Sbjct: 117 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALAQTDHCNLKFEAGR--- 172
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
TI V+ D G Y V KN G +
Sbjct: 173 TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV 206
Score = 51.8 bits (124), Expect = 1e-08
Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 6/115 (5%)
Query: 69 EGDQMTLECHSEAYPKSIN-YWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQD 127
+ + L Y + + W+ NG I + + + L I T D
Sbjct: 16 TAEGIQLYSFVTYYVEDLKVNWSH-NGSAIRYSDRVKTGVTGEQIW----LQINEPTPND 70
Query: 128 FGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKK 182
G Y + ++ L G+ + E ++ + E + +
Sbjct: 71 KGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPD 125
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 54.3 bits (131), Expect = 3e-10
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 5/97 (5%)
Query: 52 AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNA 111
P I + G+ + L W K + I + + +N
Sbjct: 4 GSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQIQESEHMKVENSENG 62
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
K LTI A ++ G Y + +N LG + L
Sbjct: 63 SK----LTILAARQEHCGCYTLLVENKLGSRQAQVNL 95
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 56.4 bits (136), Expect = 3e-10
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 51 IAQVPPMIWIQNQLVGAMEGDQMTLECHS-EAYPKSINYWTKENGEIIAQGSKYEPILLD 109
IA + ++ + +G+ LEC + P+ W K +G + K
Sbjct: 104 IAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIK-DGVPL-DDLKAMSFGAS 161
Query: 110 NAYKIHMK--LTIKAVTKQDFGAYKCVSKNSLG 140
+ +I L I V D G YKC+++N +G
Sbjct: 162 SRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Score = 51.8 bits (124), Expect = 1e-08
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLDNAYK 113
P I + + + TL C E P+ +I W K +GE ++ K +
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTI-EWFK-DGEPVSTNEKKSHRVQFKDGA 66
Query: 114 IHMKLTIKAVTKQDFGAYKCVSKNSLGDT 142
+ T++ +QD G Y CV+KN +G
Sbjct: 67 LFFYRTMQGKKEQDGGEYWCVAKNRVGQA 95
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 53.9 bits (130), Expect = 4e-10
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 52 AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLDN 110
PP + V + G + L+C P + W K G+ +A + D
Sbjct: 10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVV-WEK-GGQQLAASERLS-FPADG 66
Query: 111 AYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
A L + A D G Y C ++N+ G+ + +
Sbjct: 67 A---EHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAV 101
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 53.2 bits (128), Expect = 6e-10
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 8/100 (8%)
Query: 53 QVPPMI----WIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILL 108
+ P ++ +L + + C + P W K NG+ Q + +
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKV 60
Query: 109 DNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
N H L +++V D G Y CV +N G + + L
Sbjct: 61 RNQ---HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 97
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 55.5 bits (133), Expect = 6e-10
Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 8/101 (7%)
Query: 49 EIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEA-YPKSINYWTKENGEIIAQGSKYEPIL 107
+ V P G+ L+C + W K +
Sbjct: 115 LLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWL--AE 172
Query: 108 LDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ + +++K + + G Y C +N +G ++L
Sbjct: 173 MTSPV-----ISVKNASSEYSGTYSCTVQNRVGSDQCMLRL 208
Score = 43.5 bits (102), Expect = 9e-06
Identities = 17/119 (14%), Positives = 31/119 (26%), Gaps = 29/119 (24%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSIN----YWTKENGEIIAQ--------- 99
P Q + +G+ L C P+ W +
Sbjct: 4 TTPE------QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSG 57
Query: 100 GSKYEPILLDNAYKIHMK----------LTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
Y+ D ++H + + + D G Y+C K + G + L
Sbjct: 58 DKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLL 116
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 53.8 bits (129), Expect = 7e-10
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 9/99 (9%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLD---N 110
P QL A+E + + P S+ W NG ++ + S L+ N
Sbjct: 3 MPAS---VQLHTAVEMHHWCIPFSVDGQPAPSL-RWLF-NGSVLNETSFIFTEFLEPAAN 57
Query: 111 AYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
H L + T + G Y ++ N G SI
Sbjct: 58 ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAA 96
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 53.2 bits (128), Expect = 8e-10
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 9/99 (9%)
Query: 53 QVPPMIWIQNQL---VGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLD 109
PP I + L G+Q+ L + P+ WTK + S+ D
Sbjct: 19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPL--DTSRVHVRTSD 76
Query: 110 NAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
++ + D G Y+ + +I++
Sbjct: 77 F----DTVFFVRQAARSDSGEYELSVQIENMKDTATIRI 111
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 55.3 bits (133), Expect = 8e-10
Identities = 27/211 (12%), Positives = 49/211 (23%), Gaps = 65/211 (30%)
Query: 2 EKQGQNVPPMI----WIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGE------- 49
E P ++ +L + + C + P ++ W K E
Sbjct: 8 ENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTM-RWLKNGKEFKQEHRI 66
Query: 50 ------------IIAQV----------------------------------PPMIWIQNQ 63
I+ V P +
Sbjct: 67 GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPA 126
Query: 64 LVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHM------K 117
+ G + C + + W K + ++ L +
Sbjct: 127 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEV 186
Query: 118 LTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L + VT+ D G Y C N +G + S L
Sbjct: 187 LALFNVTEADAGEYICKVSNYIGQANQSAWL 217
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 52.7 bits (127), Expect = 8e-10
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 7/89 (7%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLDNA 111
P I ++ + G + ++ P + W NG + + SK N
Sbjct: 6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVK-WYH-NGVELQESSKIH---YTNT 60
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
+ L I D G Y+ V N G
Sbjct: 61 SGVLT-LEILDCHTDDSGTYRAVCTNYKG 88
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 55.8 bits (134), Expect = 9e-10
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 52 AQVPPMIWIQNQLVGAMEGDQMTLECHSEA-YPKSINYWTKENGEIIAQGSKYEPILLDN 110
A+VP Q + + GD + L C P W K +G + + +L+
Sbjct: 5 AEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVK-DGTGLVPSER---VLVGP 60
Query: 111 AYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDT 142
+L + + +D GAY C + +
Sbjct: 61 Q-----RLQVLNASHEDSGAYSCRQRLTQRVL 87
Score = 53.9 bits (129), Expect = 5e-09
Identities = 29/196 (14%), Positives = 52/196 (26%), Gaps = 61/196 (31%)
Query: 14 IQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI-------------------IAQV 54
+ +L+ + + C + P W K E + V
Sbjct: 128 MDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESV 187
Query: 55 ----------------------------------PPMIWIQNQLVGAMEGDQMTLECHSE 80
P + A+ G + C
Sbjct: 188 VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY 247
Query: 81 AYPKSINYWTKENG----EIIAQGSKYEPILLDNAYKIHMK----LTIKAVTKQDFGAYK 132
+ + W K ++ G+ Y +L K L++ VT +D G Y
Sbjct: 248 SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYT 307
Query: 133 CVSKNSLGDTDGSIKL 148
C++ NS+G + S L
Sbjct: 308 CLAGNSIGFSHHSAWL 323
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 55.1 bits (132), Expect = 2e-09
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 12/112 (10%)
Query: 49 EIIAQVPPMIWIQNQLVGAMEGDQMTLEC---HSEAYPKSINYWTKENGEIIAQGSKYEP 105
+ + P+I + + A G ++T+ C P + W N I
Sbjct: 220 KKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGR 279
Query: 106 IL--------LDNAYKIHMKLTIKAVTKQDFGA-YKCVSKNSLGDTDGSIKL 148
+ +N I + L VT++D +KCV N+L +
Sbjct: 280 VTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 47.4 bits (112), Expect = 7e-07
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 67 AMEGDQMTLEC-------HSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLT 119
+EG+ + L C + P+ W K + G + + + L
Sbjct: 30 RLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDG-----ALW 84
Query: 120 IKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ ++D G Y C ++N+ SI+L
Sbjct: 85 LLPALQEDSGTYVCTTRNASYCDKMSIEL 113
Score = 42.8 bits (100), Expect = 2e-05
Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 9/90 (10%)
Query: 60 IQNQLVGAMEGDQMT---LECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHM 116
Q++ + L + W K + ++ + ++ +
Sbjct: 127 SYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYK-DSLLLDKDNEKFLSVRGTT----- 180
Query: 117 KLTIKAVTKQDFGAYKCVSKNSLGDTDGSI 146
L + V +D G Y+CV + +I
Sbjct: 181 HLLVHDVALEDAGYYRCVLTFAHEGQQYNI 210
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 52.4 bits (125), Expect = 2e-09
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Query: 65 VGAMEGDQMTLECHSEAYPKSINYWT-----KENGEIIAQGSKYEPILLDNAYKIHMKLT 119
+ G+++ L C + + ++ + K LT
Sbjct: 18 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLT 77
Query: 120 IKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
I VT+ D G Y C + + L S +
Sbjct: 78 IDGVTRSDQGLYTCAASSGLMTKKNSTFV 106
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 53.9 bits (130), Expect = 2e-09
Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 9/107 (8%)
Query: 47 NGEIIAQVPPMI---WIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKY 103
+ +++ Q P + + G + L P W +++
Sbjct: 92 SSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH-GQKLLQNSENI 150
Query: 104 EPILLDNAYKIHMKLTIKAVTKQ-DFGAYKCVSKNSLGDTDGSIKLY 149
I Y L +K V ++ G YK N G D + +
Sbjct: 151 T-IENTEHYTH---LVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193
Score = 53.2 bits (128), Expect = 3e-09
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 51 IAQVPPMI--WIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILL 108
++ P I +++ G+ L C P W + G+ + Q KY+ +
Sbjct: 3 MSGEAPGIRKEMKDVTT--KLGEAAQLSCQIVGRPLPDIKWYR-FGKELIQSRKYK-MSS 58
Query: 109 DNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
D LT+ ++D G Y C++ N +G+ + S KL
Sbjct: 59 DGR---THTLTVMTEEQEDEGVYTCIATNEVGEVETSSKL 95
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 53.4 bits (128), Expect = 3e-09
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 15/82 (18%)
Query: 67 AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQ 126
++G +TL S G+ I G L++ + Q
Sbjct: 109 LLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKT---------------LSVSQLELQ 153
Query: 127 DFGAYKCVSKNSLGDTDGSIKL 148
D G + C + + I +
Sbjct: 154 DSGTWTCTVLQNQKKVEFKIDI 175
Score = 45.7 bits (108), Expect = 1e-06
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 12/93 (12%)
Query: 62 NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMK---- 117
++V +GD + L C + +W N I +
Sbjct: 2 KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 61
Query: 118 --------LTIKAVTKQDFGAYKCVSKNSLGDT 142
L IK + +D Y C ++ +
Sbjct: 62 LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEV 94
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 51.1 bits (123), Expect = 3e-09
Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 6/87 (6%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEPILLDNAYK 113
P I+ + Q +G P W K NG I + +
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPEC-EWYK-NGVKIERSDRI--YWYWPEDN 60
Query: 114 IHMKLTIKAVTKQDFGAYKCVSKNSLG 140
+ L I+ VT +D + + N G
Sbjct: 61 VCE-LVIRDVTGEDSASIMVKAINIAG 86
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 53.8 bits (129), Expect = 4e-09
Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 9/128 (7%)
Query: 25 DQMTLECHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK 84
+ T+ + + K + E I + P + L+C K
Sbjct: 192 NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE-VTGECNVLLKCKVANIKK 250
Query: 85 SIN-YWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTD 143
+ W K + I+ K++ D L I +K+D G Y+ + K+ G
Sbjct: 251 ETHIVWYK-DEREISVDEKHD--FKDGICT----LLITEFSKKDAGIYEVILKDDRGKDK 303
Query: 144 GSIKLYGK 151
+KL +
Sbjct: 304 SRLKLVDE 311
Score = 52.7 bits (126), Expect = 9e-09
Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 54 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYK 113
+ P V + EC + PKS W+K + + E N K
Sbjct: 2 IDPFTKEVVVNVDDDGVISLNFECD-KMTPKSEFSWSK-DYVSTEDSPRLEVESKGNKTK 59
Query: 114 IHMKLTIKAVTKQDFGAYKCVSKNSLG 140
+T K + D G Y C ++ G
Sbjct: 60 ----MTFKDLGMDDLGIYSCDVTDTDG 82
Score = 52.3 bits (125), Expect = 2e-08
Identities = 22/117 (18%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSE-AYPKSINYWTKENGEIIAQGSKYEPILLDNA 111
+ P + V +E Q+ +E + + N + I +G KY+ + +D
Sbjct: 105 KFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIF-NEKEIFEGPKYK-MHIDRN 162
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKK 168
I ++ ++ + +D G Y ++ ++ L G KK +KE E + ++
Sbjct: 163 TGII-EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWI 218
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 52.7 bits (126), Expect = 6e-09
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Query: 50 IIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLD 109
+ Q ++Q E D +TL C S +I W N + + + + +
Sbjct: 105 HVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIGANI-QWLF-NSQSLQLTERMT-LSQN 161
Query: 110 NAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
N+ L I + ++D G Y+C N +
Sbjct: 162 NSI-----LRIDPIKREDAGEYQCEISNPVS 187
Score = 43.5 bits (102), Expect = 9e-06
Identities = 14/87 (16%), Positives = 22/87 (25%), Gaps = 11/87 (12%)
Query: 67 AMEGDQMTLECHSEAYPKSINYWTK-----ENGEIIAQGSKYEPILLDNAYKIHMK---- 117
E + + L H+ W K + EI AY
Sbjct: 11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN 70
Query: 118 --LTIKAVTKQDFGAYKCVSKNSLGDT 142
L + +T +D G Y +
Sbjct: 71 GSLLFQMITMKDMGVYTLDMTDENYRR 97
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 51.1 bits (122), Expect = 6e-09
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 65 VGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMK------L 118
+ EG +TL+C + S W +G I P+L ++ Y++ +
Sbjct: 11 ITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEY--PVLKNSKYQLLHHSANQLSI 68
Query: 119 TIKAVTKQDFGAYKCV 134
T+ VT QD G YKC+
Sbjct: 69 TVPNVTLQDEGVYKCL 84
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 53.3 bits (127), Expect = 6e-09
Identities = 19/182 (10%), Positives = 41/182 (22%), Gaps = 54/182 (29%)
Query: 21 AMEGDQMTLECHSEAYPKSINYWTKENGEI--------IAQV------------------ 54
++G +TL S G+ ++Q+
Sbjct: 108 LLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKK 167
Query: 55 ------------PPMIWIQNQLVGA---------------MEGDQMTLECHSEAYPKSIN 87
I + G ++ + + KS
Sbjct: 168 VEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWI 227
Query: 88 YWTKENGEIIAQGSKYEPIL-LDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSI 146
+ +N E+ + +P L + +H+ L G + G +
Sbjct: 228 TFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEV 287
Query: 147 KL 148
L
Sbjct: 288 NL 289
Score = 45.6 bits (107), Expect = 3e-06
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 12/88 (13%)
Query: 63 QLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMK----- 117
++V +GD + L C + +W N I +
Sbjct: 2 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSL 61
Query: 118 -------LTIKAVTKQDFGAYKCVSKNS 138
L IK + +D Y C ++
Sbjct: 62 WDQGNFPLIIKNLKIEDSDTYICEVEDQ 89
Score = 31.3 bits (70), Expect = 0.16
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 14/74 (18%)
Query: 65 VGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVT 124
V Q L C + + A+ SK + V
Sbjct: 291 VMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSK--------------REKAVWVL 336
Query: 125 KQDFGAYKCVSKNS 138
+ G ++C+ +S
Sbjct: 337 NPEAGMWQCLLSDS 350
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 50.6 bits (121), Expect = 8e-09
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYWTKENGEIIAQGSKYEP--ILLD 109
PP I + +G+ TL C +E P +I W K + +LL
Sbjct: 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTI-EWYKGGERVETDKDDPRSHRMLLP 65
Query: 110 NAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGD 141
+ +++ ++ D G Y CV++N LG+
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGE 97
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 51.1 bits (122), Expect = 1e-08
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 6/102 (5%)
Query: 61 QNQLVGAMEGDQMTLECHSEAYPKSIN--YWTKENGEIIAQGSKYEPILLDNAYKIHMK- 117
+ V G + L + I+ W + + + K +P L A++I
Sbjct: 2 DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG 61
Query: 118 -LTIKAVTKQDFGAYKCVSKNSLGD--TDGSIKLYGKKKKKK 156
L IK +T+ D G Y ++ G + ++ L + K
Sbjct: 62 DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSK 103
Score = 28.8 bits (64), Expect = 0.89
Identities = 9/73 (12%), Positives = 16/73 (21%), Gaps = 16/73 (21%)
Query: 68 MEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQD 127
E TL C + E + + T+
Sbjct: 108 WECSNATLTCEVLEGTDVELKLYQ-GKEHLRSLRQ---------------KTMSYQWTNL 151
Query: 128 FGAYKCVSKNSLG 140
+KC + N +
Sbjct: 152 RAPFKCKAVNRVS 164
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 48.8 bits (117), Expect = 3e-08
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
P I + G+ + L C ++ W K + + I + KY+ ++ + +
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCELSRAGTPVH-WLK-DRKAIRKSQKYD-VVCEG--TM 62
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNSLG 140
L I+ + +D G Y C + S
Sbjct: 63 A-MLVIRGASLKDAGEYTCEVEASKS 87
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 51.8 bits (124), Expect = 3e-08
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 67 AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQ 126
EG C A + W K++ E+ Q KY N Y LTI V
Sbjct: 494 VGEGQSANFYCRVIASSPPVVTWHKDDREL-KQSVKYMKRYNGNDYG----LTINRVKGD 548
Query: 127 DFGAYKCVSKNSLGDTDGSIKL 148
D G Y +KNS G + + L
Sbjct: 549 DKGEYTVRAKNSYGTKEEIVFL 570
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 51.5 bits (122), Expect = 3e-08
Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 14/126 (11%)
Query: 31 CHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK-SINYW 89
C + + + + ++ I +V + G + + C SI YW
Sbjct: 307 CGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYW 366
Query: 90 TKENGE------IIAQGSKYEPI-------LLDNAYKIHMKLTIKAVTKQDFGAYKCVSK 136
G ++ + LL+ + + +T +D G Y C++
Sbjct: 367 CLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTN 426
Query: 137 NSLGDT 142
Sbjct: 427 GDTLWR 432
Score = 45.8 bits (107), Expect = 3e-06
Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 7/117 (5%)
Query: 39 SINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECH----SEAYPKSINYWTKENG 94
+ + + EI V A+ G+ + + CH +Y K W
Sbjct: 426 NGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGC 485
Query: 95 EIIAQGSKYEP--ILLDNAYKIHMKLTIKAVTKQDFGAYKC-VSKNSLGDTDGSIKL 148
+ + + + + + LT+ VT+ D G Y C V + ++ +
Sbjct: 486 QALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYV 542
Score = 45.0 bits (105), Expect = 6e-06
Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 14/94 (14%)
Query: 63 QLVGAMEGDQMTLECH---SEAYPKSINYWTKENG----EIIAQGSKYEPI-------LL 108
+ V ++EG+ +++ C+ + + YW ++ + Y L
Sbjct: 8 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT 67
Query: 109 DNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDT 142
+ + I +++ D G YKC +
Sbjct: 68 NFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGL 101
Score = 44.6 bits (104), Expect = 9e-06
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 2/84 (2%)
Query: 65 VGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVT 124
+G + C + A + +L + I +
Sbjct: 241 LGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRI--LLNPQDKDGSFSVVITGLR 298
Query: 125 KQDFGAYKCVSKNSLGDTDGSIKL 148
K+D G Y C + + +GS
Sbjct: 299 KEDAGRYLCGAHSDGQLQEGSPIQ 322
Score = 39.2 bits (90), Expect = 5e-04
Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 12/105 (11%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEA-YPKSINYWTKENGE---IIAQGSKYEPILLDN 110
P + ++ G +T+ C + + K+ G ++ S Y
Sbjct: 112 GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTG 171
Query: 111 AYKIHMK--------LTIKAVTKQDFGAYKCVSKNSLGDTDGSIK 147
++ ++ + I + D G Y C + + +
Sbjct: 172 RIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNAD 216
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 48.7 bits (116), Expect = 4e-08
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 13/88 (14%)
Query: 52 AQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNA 111
Q P QN V +EG L C + + W+ + + K L DN
Sbjct: 8 GQFPLT---QN--VTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDK--KALRDNR 60
Query: 112 YKIHMK------LTIKAVTKQDFGAYKC 133
++ +++ V+ D G Y C
Sbjct: 61 IELVRASWHELSISVSDVSLSDEGQYTC 88
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 51.4 bits (122), Expect = 4e-08
Identities = 23/136 (16%), Positives = 49/136 (36%), Gaps = 14/136 (10%)
Query: 26 QMTLECHSEAYPKSINYWTKENGEIIAQVPPMIWI--QNQLVGAMEGDQMTLECH----S 79
+T + + + K G VPP+I + + G+++ + C
Sbjct: 195 VVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSF 254
Query: 80 EAYPKSINYWTKENGEIIAQGSKYEPIL------LDNAYKIHMKLTIKAVTKQDFGA-YK 132
++ +WT +G+ + I L+IK VT +D Y
Sbjct: 255 LMDSRNEVWWTI-DGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYV 313
Query: 133 CVSKNSLGDTDGSIKL 148
C ++++ G+ + K+
Sbjct: 314 CHARSAKGEVAKAAKV 329
Score = 41.0 bits (95), Expect = 1e-04
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 11/95 (11%)
Query: 65 VGAMEGDQMTLECHSEAYPKSINYWTKENGEI-------IAQGSKYEPI-LLDNAYKIHM 116
+ E + ++C + NY T + + EPI +I
Sbjct: 17 IQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISK 76
Query: 117 ---KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L + D G Y C+ +N+ + + L
Sbjct: 77 EKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPL 111
Score = 36.4 bits (83), Expect = 0.003
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 12/95 (12%)
Query: 55 PPMIWIQNQLVGAMEGDQMT---LECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNA 111
PM ++L ++T ++ + + K W +I Q ++ +
Sbjct: 122 SPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKI--QNFNN--VIPEG- 176
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSI 146
M L+ + G Y CV +
Sbjct: 177 ----MNLSFLIALISNNGNYTCVVTYPENGRTFHL 207
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 49.0 bits (116), Expect = 6e-08
Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 11/109 (10%)
Query: 32 HSEAYPKSINYWTKEN-GEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWT 90
H ++ + K ++Q W ++ V + G + L+C + + S W+
Sbjct: 16 HMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETV--VAGGTVVLKCQVKDHEDSSLQWS 73
Query: 91 KENGEIIAQGSKYEPILLDNAYKIHMK------LTIKAVTKQDFGAYKC 133
+ + G + L DN ++ ++I V D G Y C
Sbjct: 74 NPAQQTLYFGE--KRALRDNRIQLVTSTPHELSISISNVALADEGEYTC 120
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 50.6 bits (120), Expect = 6e-08
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 19/96 (19%)
Query: 54 VPPMIWIQNQLVGAMEGDQMTLECH---SEAYPKSINY-WTKENGEIIAQGSKYEPILLD 109
+ + IQ+ + GD TL E P ++ Y WTK++ +
Sbjct: 1 MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT------- 53
Query: 110 NAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGS 145
LT+ T ++ G+YK +++ T
Sbjct: 54 --------LTVADATSENAGSYKVTVQDTDTMTSVE 81
Score = 50.6 bits (120), Expect = 6e-08
Identities = 26/190 (13%), Positives = 44/190 (23%), Gaps = 68/190 (35%)
Query: 8 VPPMIWIQNQLVGAMEGDQMTLECH---SEAYPKSINY-WTKENGEI------------- 50
+ + IQ+ + GD TL E P ++ Y WTK++
Sbjct: 1 MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADAT 60
Query: 51 ---------------------------IAQVPPMIWIQNQLVGAMEGDQMTLEC------ 77
+ + Q + L
Sbjct: 61 SENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSG 120
Query: 78 -HSEAYPKSINY-WTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVS 135
+ A ++Y W+K I +TI+ T G Y
Sbjct: 121 GKTPADNYELHYSWSKGEDVIDTTQD----------------ITIQEFTADKNGVYTVKV 164
Query: 136 KNSLGDTDGS 145
D+ S
Sbjct: 165 WGESEDSAAS 174
Score = 38.3 bits (88), Expect = 7e-04
Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 15/124 (12%)
Query: 47 NGEIIAQVPPMIWIQNQL--VGAMEGDQMTLEC--------HSEAYPK-SINY-W-TKEN 93
+ + M Q+ + G++++L S P +I Y W +
Sbjct: 174 SASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQRE 233
Query: 94 GEIIAQGSKYEPILLDNAYKI--HMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGK 151
G++ E + I L ++ T D + CV+K D ++++
Sbjct: 234 GQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAAS 293
Query: 152 KKKK 155
+K
Sbjct: 294 TSRK 297
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 49.7 bits (118), Expect = 7e-08
Identities = 16/121 (13%), Positives = 37/121 (30%), Gaps = 10/121 (8%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIA-QGSKYEP---ILL 108
P ++ G ++LEC + + + + + + S +L
Sbjct: 6 TAPK------EVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLE 59
Query: 109 DNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKK 168
+ I +V +D G Y+C+ + + K + + +V
Sbjct: 60 EQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTG 119
Query: 169 E 169
E
Sbjct: 120 E 120
Score = 45.4 bits (107), Expect = 2e-06
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
+ I +++ ++ L C + YP + W + + + Y++
Sbjct: 103 ASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTP----EGLYQV 158
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNSLG 140
L +K Q + C+ N+
Sbjct: 159 TSVLRLK---PQPSRNFSCMFWNAHM 181
Score = 33.1 bits (75), Expect = 0.031
Identities = 6/45 (13%), Positives = 16/45 (35%)
Query: 6 QNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI 50
+ + I +++ ++ L C + YP + W +
Sbjct: 100 KVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPA 144
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 47.4 bits (113), Expect = 1e-07
Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 4/72 (5%)
Query: 67 AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQ 126
EG T C +W + + E H LT++ + +
Sbjct: 25 VQEGSSATFRCRISPANYEPVHWFL-DKTPLHANELNEIDAQPG--GYH-VLTLRQLALK 80
Query: 127 DFGAYKCVSKNS 138
D G + +
Sbjct: 81 DSGTIYFEAGDQ 92
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 49.1 bits (117), Expect = 2e-07
Identities = 24/190 (12%), Positives = 45/190 (23%), Gaps = 63/190 (33%)
Query: 9 PPMIWIQ-NQLVGAMEGDQMTLECHSEAYPKSINYWTKENG------------------- 48
P + + +V G +TL CH + KE+
Sbjct: 24 KPFLSAWPSAVV--PRGGHVTLRCHYRHRFNNF-MLYKEDRIHIPIFHGRIFQESFNMSP 80
Query: 49 -----------------------------EIIAQV---PPMIWIQN-QLVGAMEGDQMTL 75
I+ P + LV G+++ L
Sbjct: 81 VTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLV--KSGERVIL 138
Query: 76 ECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVS 135
+C S+ + + KE + + +I + G Y+C
Sbjct: 139 QCWSDIMFEHF-FLHKEGISKDPSRLVGQI----HDGVSKANFSIGPMMLALAGTYRCYG 193
Query: 136 KNSLGDTDGS 145
+ S
Sbjct: 194 SVTHTPYQLS 203
Score = 45.6 bits (108), Expect = 2e-06
Identities = 21/122 (17%), Positives = 31/122 (25%), Gaps = 31/122 (25%)
Query: 25 DQMTLECHSEAYPKSINYWTKENGEIIAQVPPMIWIQ-NQLVGAMEGDQMTLECHSEAYP 83
D H K P + + +V G +TL CH
Sbjct: 12 DDDKGS-HMGGQDK-----------------PFLSAWPSAVV--PRGGHVTLRCHYRHRF 51
Query: 84 KSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTD 143
+ KE + PI ++ + VT G Y C + T
Sbjct: 52 NNF-MLYKE-------DRIHIPIFHGRIFQE--SFNMSPVTTAHAGNYTCRGSHPHSPTG 101
Query: 144 GS 145
S
Sbjct: 102 WS 103
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 48.0 bits (114), Expect = 2e-07
Identities = 11/91 (12%), Positives = 30/91 (32%), Gaps = 13/91 (14%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY-WTKENGEIIAQGSKYEPILLDNA 111
+ P + + L C ++ P+ ++ W + + +A + P
Sbjct: 104 EGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQ-DAVPLATAPGHGP------ 156
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLGDT 142
+ ++ ++ C + N+ G T
Sbjct: 157 -----QRSLHVPGLNKTSSFSCEAHNAKGVT 182
Score = 47.6 bits (113), Expect = 3e-07
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 9/93 (9%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLEC--HSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAY 112
+ G TL C + P + +W + +G+I+ + +
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEV-HWLR-DGQILELADSTQTQVPLGED 59
Query: 113 KIHM-----KLTIKAVTKQDFGAYKCVSKNSLG 140
+ +L I ++ D G Y+C+
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQ 92
Score = 33.7 bits (77), Expect = 0.019
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 7 NVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY-WTKENGEIIAQVPPM 57
P + + L C ++ P+ ++ W + + +A P
Sbjct: 104 EGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQ-DAVPLATAPGH 154
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 46.2 bits (110), Expect = 2e-07
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 67 AMEGDQMTLECH-SEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTK 125
+EG+ + EC S WT G+ + S+++ + + L ++
Sbjct: 20 VLEGESCSFECVLSHESASDPAMWTV-GGKTVGSSSRFQ-ATRQG--RKY-ILVVREAAP 74
Query: 126 QDFGAYKCVSKNSLG 140
D G +
Sbjct: 75 SDAGEVVFSVRGLTS 89
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 46.2 bits (110), Expect = 3e-07
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 55 PPMI--WIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAY 112
P +++ V +EG TL C + + W ++ G KY + +
Sbjct: 8 PVRFQEALKDLEV--LEGGAATLRCVLSSVAAPVK-WCY-GNNVLRPGDKYS-LRQEG-- 60
Query: 113 KIHMKLTIKAVTKQDFGAYKCV 134
+ +L ++ + QD G Y C
Sbjct: 61 AML-ELVVRNLRPQDSGRYSCS 81
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 45.8 bits (109), Expect = 4e-07
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 48 GEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPIL 107
G + P + A EG TL+C E + W K E + G +Y +
Sbjct: 1 GSSGSSGPARFTQDLKTKEASEGATATLQC--ELSKVAPVEWKK-GPETLRDGGRYS-LK 56
Query: 108 LDNAYKIHMKLTIKAVTKQDFGAYKCVSKNS 138
D +L I ++ D G Y C+
Sbjct: 57 QDG--TRC-ELQIHDLSVADAGEYSCMCGQE 84
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 45.5 bits (108), Expect = 4e-07
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 48 GEIIAQVPPMIWIQNQL--VGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEP 105
G + P I + +++ L C W K +G+ + +
Sbjct: 1 GSSGSSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFPAT-WYK-DGQKVEESELLV- 57
Query: 106 ILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNS 138
+ +D + H +L + QD G ++C ++
Sbjct: 58 VKMDG--RKH-RLILPEAKVQDSGEFECRTEGV 87
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 46.3 bits (109), Expect = 5e-07
Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 29/125 (23%)
Query: 53 QVPPMIWIQNQL-----VGAMEGDQMTLECHSEAYPKSINYWTKENGE------------ 95
Q PP I + + + G+++ L+ P W K +
Sbjct: 11 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDA 70
Query: 96 -----IIAQGSKYEPILLDNAYKIHM-------KLTIKAVTKQDFGAYKCVSKNSLGDTD 143
+ + +L + ++ + T++ K+D G Y KN +G+
Sbjct: 71 PEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQ 130
Query: 144 GSIKL 148
++ +
Sbjct: 131 VNLTV 135
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 45.4 bits (108), Expect = 5e-07
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 67 AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQ 126
G ++ L+C WTK NG + + + + ++ +IH KL I +
Sbjct: 19 VNLGKEICLKCEISENIPGK--WTK-NGLPVQESDRLK-VVQKG--RIH-KLVIANALTE 71
Query: 127 DFGAYKCVSKN 137
D G Y
Sbjct: 72 DEGDYVFAPDA 82
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 45.5 bits (108), Expect = 5e-07
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 12/96 (12%)
Query: 48 GEIIAQVPPMIW--IQNQLVGAMEGDQMTLECH-SEAYPKSINYWTKENGEIIAQGSKYE 104
G + + I + V +Q +C S+ W K NG + +
Sbjct: 1 GSSGSSGQLEVLQDIADLTV--KAAEQAVFKCEVSDEKVTGK--WYK-NGVEVRPSKRIT 55
Query: 105 PILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
I + H KL I V +D G Y V
Sbjct: 56 -ISHVG--RFH-KLVIDDVRPEDEGDYTFVPDGYAL 87
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 45.7 bits (108), Expect = 5e-07
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 61 QNQLVGAMEGDQMTLECHSEAYPKSINY--WTKENGEIIAQGSKYEPILLDNAYKIH--- 115
+ A +G + L+CH + + W +++ + + + ++K
Sbjct: 9 TTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISP-SFKDRVAP 67
Query: 116 ---MKLTIKAVTKQDFGAYKC-VSKNSLGDTDGSIKL 148
+ LT++++T D G Y C G G I L
Sbjct: 68 GPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFL 104
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 46.8 bits (111), Expect = 8e-07
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 10/84 (11%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
P + LV M G+ ++L C S P KE + Q E
Sbjct: 106 KPFLSADRGLV-LMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEH--------- 155
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNS 138
++ V G Y+C +
Sbjct: 156 PANFSLGPVDLNVSGIYRCYGWYN 179
Score = 41.0 bits (96), Expect = 7e-05
Identities = 11/95 (11%), Positives = 28/95 (29%), Gaps = 12/95 (12%)
Query: 51 IAQV----PPMIWIQ-NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEP 105
+AQ P I + + ++ + ++C + +N G + +
Sbjct: 1 MAQEGDFPMPFISAKSSPVI--PLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKF 58
Query: 106 ILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
+ + I + G Y+C +
Sbjct: 59 WNETDP-----EFVIDHMDANKAGRYQCQYRIGHY 88
Score = 36.0 bits (83), Expect = 0.004
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQVP 55
P + LV M G+ ++L C S P KE + Q
Sbjct: 106 KPFLSADRGLV-LMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQ 151
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 47.2 bits (111), Expect = 8e-07
Identities = 18/159 (11%), Positives = 44/159 (27%), Gaps = 33/159 (20%)
Query: 12 IWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQLVGAMEGD 71
+ +Q+ + D+ C +S+ + V P + + GD
Sbjct: 86 LLLQD----VQKADEGIYTCEIRLKNESMV----MKKPVELWVLPEEP---RDLRVRVGD 134
Query: 72 QMTLECHSEAYPKSIN---YWTKENGE--------IIAQGSKYEPILLDNAYKIHMK--- 117
+ C ++ + W +G + ++ +
Sbjct: 135 TTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTG 194
Query: 118 --------LTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ ++ V + D G Y C ++ +I L
Sbjct: 195 DISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL 233
Score = 45.6 bits (107), Expect = 2e-06
Identities = 15/115 (13%), Positives = 34/115 (29%), Gaps = 18/115 (15%)
Query: 52 AQVPPMIWIQNQLVGAMEGDQMTLECH---SEAYPKSINYWTKENGE-------IIAQGS 101
+Q P + + + + G+ + + C +E W + + +
Sbjct: 2 SQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61
Query: 102 KYEPI--------LLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
P L+ + + L ++ V K D G Y C + +
Sbjct: 62 LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPV 116
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 45.4 bits (107), Expect = 8e-07
Identities = 21/135 (15%), Positives = 33/135 (24%), Gaps = 17/135 (12%)
Query: 15 QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQMT 74
V G + L CH G I+ V W + +
Sbjct: 8 VLPEVRGQLGGTVELPCH---------LLPPVPGLYISLV---TWQRPDA----PANHQN 51
Query: 75 LECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKC- 133
+ S + + +K A L + +T +D G Y C
Sbjct: 52 VAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCE 111
Query: 134 VSKNSLGDTDGSIKL 148
+ G G L
Sbjct: 112 FATFPKGSVRGMTWL 126
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 44.3 bits (105), Expect = 1e-06
Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 6/84 (7%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
I + +G ++ A PK W K NG+ I +KY +
Sbjct: 8 AAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYK-NGQEIRPSTKYI-FEHKGCQR- 63
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNS 138
L I D Y + +
Sbjct: 64 --ILFINNCQMTDDSEYYVTAGDE 85
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 44.2 bits (104), Expect = 2e-06
Identities = 14/102 (13%), Positives = 26/102 (25%), Gaps = 8/102 (7%)
Query: 55 PPMIWIQN-QLVGAMEGDQMTLECHSEAYPKSIN---YWTKENGEIIAQGSKYEPILLDN 110
P +++ Q G +T W K ++ L D+
Sbjct: 3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 111 AYKIHM----KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ +L I G+Y+C + L
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNL 104
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 43.9 bits (104), Expect = 2e-06
Identities = 14/88 (15%), Positives = 23/88 (26%), Gaps = 8/88 (9%)
Query: 48 GEIIAQVPPMIWIQNQLVGAMEGDQMTLECH-SEAYPKSINYWTKENGEIIAQGSKYEPI 106
G + + + E C W K + K++
Sbjct: 1 GSSGSSGANCFTEELTNLQVEEKGTAVFTCKTEHPAATVT--WRK-GLLELRASGKHQ-P 56
Query: 107 LLDNAYKIHMKLTIKAVTKQDFGAYKCV 134
+ +LTI A+ K D Y C
Sbjct: 57 SQEG--LTL-RLTISALEKADSDTYTCD 81
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 45.3 bits (107), Expect = 2e-06
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 10/93 (10%)
Query: 65 VGAMEGDQMTLECHSEAYPKSINY-WTK-ENGEIIAQGSKYEPILLDNAYK--IHMK--- 117
V A+ G +TL W N +I+ + + ++ +K + +
Sbjct: 9 VNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTN 68
Query: 118 --LTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L I V+K+D G Y + + I +
Sbjct: 69 GALRIYNVSKEDRGDYYMRMLHE-TEDQWKITM 100
Score = 35.2 bits (81), Expect = 0.006
Identities = 16/114 (14%), Positives = 29/114 (25%), Gaps = 29/114 (25%)
Query: 32 HSEAYPKSINYWTKENGEIIAQV-----PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSI 86
Y + + T++ +I +V PMI E TL C
Sbjct: 80 DRGDYYMRMLHETEDQWKITMEVYEMVSKPMI--------YWECSNATLTCEVLEGTDVE 131
Query: 87 NYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
+ E + + T+ +KC + N +
Sbjct: 132 LKLYQ-GKEHLRSLR---------------QKTMSYQWTNLRAPFKCKAVNRVS 169
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 43.8 bits (103), Expect = 3e-06
Identities = 15/98 (15%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
Query: 63 QLVGAMEGDQMTLECH-SEAYPKSINYWTKENG----EIIAQGSKYEPILLDNAYKIH-- 115
V +E +T++C + + +W + +I+ + S E + + I
Sbjct: 10 TTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDN 69
Query: 116 -----MKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+T++ + K D Y C + + D ++++
Sbjct: 70 QKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQV 107
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 45.1 bits (106), Expect = 3e-06
Identities = 15/138 (10%), Positives = 42/138 (30%), Gaps = 8/138 (5%)
Query: 13 WIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQ 72
+ G++ + C + + ++ ++ P + G
Sbjct: 53 TSTLTMNPVSFGNEHSYLCTATCESRK----LEKGIQVEIYSFPKDPEIHLSGPLEAGKP 108
Query: 73 MTLECH-SEAYP--KSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFG 129
+T++C ++ YP + K ++ E + +++T V +
Sbjct: 109 ITVKCSVADVYPFDRLEIDLLK-GDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGK 167
Query: 130 AYKCVSKNSLGDTDGSIK 147
C +K + + D
Sbjct: 168 VLVCRAKLHIDEMDSVPT 185
Score = 41.7 bits (97), Expect = 4e-05
Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 9/91 (9%)
Query: 58 IWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMK 117
+++ + A GD ++L C + W + + E
Sbjct: 5 TTPESRYL-AQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGT--------TST 55
Query: 118 LTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
LT+ V+ + +Y C + + I++
Sbjct: 56 LTMNPVSFGNEHSYLCTATCESRKLEKGIQV 86
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 43.2 bits (102), Expect = 3e-06
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 65 VGAMEGDQMTLECH-SEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAV 123
V A+ +++ L C + + WTK +GE + + + ++ + +L + AV
Sbjct: 23 VAAVRLERVVLTCELCRPWAEVR--WTK-DGEEVVESPALL-LQKED--TVR-RLVLPAV 75
Query: 124 TKQDFGAYKCV 134
+D G Y C
Sbjct: 76 QLEDSGEYLCE 86
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 43.1 bits (102), Expect = 4e-06
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 7/85 (8%)
Query: 54 VPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYK 113
+P + A EG L C W K E + G ++ + D
Sbjct: 18 LPIKFTEGLRNEEATEGATAVLRCELSKMAPVE--WWK-GHETLRDGDRHS-LRQDG--A 71
Query: 114 IHMKLTIKAVTKQDFGAYKCVSKNS 138
+L I+ + +D G Y C+
Sbjct: 72 RC-ELQIRGLVAEDAGEYLCMCGKE 95
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 45.0 bits (106), Expect = 4e-06
Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 8/92 (8%)
Query: 55 PPMIWIQ-NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYK 113
P + LV + + L+C S+ +E E +
Sbjct: 7 KPSLLAHPGPLV--KSEETVILQCWSD-VRFQHFLLHREGKFKDTLHLIGEHHDGVS--- 60
Query: 114 IHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGS 145
+I + + G Y+C + S
Sbjct: 61 -KANFSIGPMMQDLAGTYRCYGSVTHSPYQLS 91
Score = 30.3 bits (68), Expect = 0.32
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 4/41 (9%)
Query: 9 PPMIWIQ-NQLVGAMEGDQMTLECHSEAYPKSINYWTKENG 48
P + LV + + L+C S+ +E
Sbjct: 7 KPSLLAHPGPLV--KSEETVILQCWSD-VRFQHFLLHREGK 44
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 41.9 bits (99), Expect = 7e-06
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 67 AMEGDQMTLECH-SEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTK 125
G+ E SE W G+ +A E I+ D K H L +
Sbjct: 17 VFVGETAHFEIELSEPDVHGQ--WKL-KGQPLAASPDCE-IIEDG--KKH-ILILHNCQL 69
Query: 126 QDFGAYKCVSKNS 138
G + N+
Sbjct: 70 GMTGEVSFQAANT 82
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 44.5 bits (104), Expect = 8e-06
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 54 VPPMIWIQNQLVGAMEGDQMTLECHS-EAYPKSINYWTKENGEIIAQGSKYEPILLDNAY 112
P + ++ ++ GD +TL C E + +W + S++ +
Sbjct: 5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM------ 58
Query: 113 KIHMKLTIKAVTKQDFGAYKCVSKNSLGDT 142
+L +++V D G Y C T
Sbjct: 59 --GRRLLLRSVQLHDSGNYSCYRAGRPAGT 86
Score = 34.5 bits (78), Expect = 0.013
Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 3/76 (3%)
Query: 8 VPPMIWIQNQLVGAMEGDQMTLECHS-EAYPKSINYWTKENGEIIAQVPPMIWIQNQLV- 65
P + ++ ++ GD +TL C E + +W + + +L+
Sbjct: 5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLL 64
Query: 66 -GAMEGDQMTLECHSE 80
D C+
Sbjct: 65 RSVQLHDSGNYSCYRA 80
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 42.0 bits (99), Expect = 9e-06
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 67 AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQ 126
+G ++ L + + W K EI GSKY + LTI +
Sbjct: 28 VSKGHKIRLTVELADHDAEV-KWLKNGQEIQMSGSKYIFESIGAKRT----LTISQCSLA 82
Query: 127 DFGAYKCVSKNS 138
D AY+CV
Sbjct: 83 DDAAYQCVVGGE 94
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 43.5 bits (102), Expect = 1e-05
Identities = 13/87 (14%), Positives = 23/87 (26%), Gaps = 5/87 (5%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHS-EAYPKSINYWTKENGEIIAQGSKYEPILLDNA 111
P + Q V C S P + W + G + + P L
Sbjct: 114 LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQ--TSQVPGFLSGT 171
Query: 112 YKIHMKLTIKAVTKQDFGA-YKCVSKN 137
+ + + Q G C ++
Sbjct: 172 VTVTSLWILV-PSSQVDGKQVTCKVEH 197
Score = 39.7 bits (92), Expect = 2e-04
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 19/108 (17%)
Query: 60 IQNQLVGAMEGDQMTLECHSEAYPKSINY-----WTKEN------------GEIIAQGSK 102
V GD +TL C+ + + + W + G ++ +
Sbjct: 4 QAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKR 63
Query: 103 YEPILLDNAYKIH-MKLTIKAVTKQDFGAYKC-VSKNSLGDTDGSIKL 148
E + ++ L + + +D G+Y C G I L
Sbjct: 64 LEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWL 111
Score = 34.7 bits (79), Expect = 0.010
Identities = 8/48 (16%), Positives = 12/48 (25%), Gaps = 1/48 (2%)
Query: 8 VPPMIWIQNQLVGAMEGDQMTLECHS-EAYPKSINYWTKENGEIIAQV 54
P + Q V C S P + W + G +
Sbjct: 115 AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTS 162
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 43.0 bits (101), Expect = 1e-05
Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 8/92 (8%)
Query: 55 PPMIWIQ-NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYK 113
P + LV + + L+C S+ +E E +
Sbjct: 8 KPSLLAHPGPLV--KSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSK-- 62
Query: 114 IHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGS 145
+I +T+ G Y+C + S
Sbjct: 63 --ANFSISRMTQDLAGTYRCYGSVTHSPYQVS 92
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 41.2 bits (97), Expect = 1e-05
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 67 AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQ 126
G E +E + W + G I+ +KY + + H LT++ V
Sbjct: 20 VAAGSPAVFEAETERAGVKVR-WQR-GGSDISASNKYG-LATEG--TRH-TLTVREVGPA 73
Query: 127 DFGAYKCVSKNS 138
D G+Y ++ +S
Sbjct: 74 DQGSYAVIAGSS 85
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 43.6 bits (101), Expect = 2e-05
Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 8/106 (7%)
Query: 30 ECHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYW 89
+E + P + G L+C ++ + +W
Sbjct: 508 CVALHQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARV-FW 566
Query: 90 TKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVS 135
+NG + A+ KY ++ L I +++ D G Y+C+S
Sbjct: 567 KFQNGVLKAESPKY-GLMGRKN------LLIFNLSEGDSGVYQCLS 605
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 41.2 bits (97), Expect = 2e-05
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 63 QLVGAMEGDQMTLECH-SEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIK 121
+ V A G TL C ++A + W K +G+ ++ SK + +L ++
Sbjct: 19 REVQAEAGASATLSCEVAQAQTEVT--WYK-DGKKLSSSSKVR-VEAVG--CTR-RLVVQ 71
Query: 122 AVTKQDFGAYKCVSKNS 138
+ + G Y C +
Sbjct: 72 QAGQAEAGEYSCEAGGQ 88
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 41.4 bits (97), Expect = 2e-05
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 65 VGAMEGDQMTLECH-SEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYK--IHMK---- 117
+ + G +TL S W + I + + ++ +K + +
Sbjct: 14 MTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSG 73
Query: 118 -LTIKAVTKQDFGAYKCVSKNSLGDT-DGSIKLY 149
L I V K+D Y G+ + IKL
Sbjct: 74 ALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQ 107
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 42.2 bits (99), Expect = 2e-05
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 62 NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDN-AYKIHM---- 116
+Q + + +T S K + W K + +A+ E + ++++
Sbjct: 2 SQQIYGVVYGNVTFHVPSNVPLKEV-LWKK-QKDKVAELENSEFRAFSSFKNRVYLDTVS 59
Query: 117 -KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
LTI +T D Y+ S N + +
Sbjct: 60 GSLTIYNLTSSDEDEYEMESPNITDTMKFFLYVL 93
Score = 29.9 bits (67), Expect = 0.34
Identities = 9/73 (12%), Positives = 16/73 (21%), Gaps = 16/73 (21%)
Query: 68 MEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQD 127
E TL C + E + + T+
Sbjct: 103 WECSNATLTCEVLEGTDVELKLYQ-GKEHLRSLRQ---------------KTMSYQWTNL 146
Query: 128 FGAYKCVSKNSLG 140
+KC + N +
Sbjct: 147 RAPFKCKAVNRVS 159
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 40.8 bits (96), Expect = 2e-05
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 67 AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQ 126
A G+++ LEC ++ W K EII I ++ K H L I+ TK
Sbjct: 19 AYCGERVELECEVSEDDANVK-WFKNGEEIIPGPKSRYRIRVEG--KKH-ILIIEGATKA 74
Query: 127 DFGAYKCVSKNS 138
D Y ++
Sbjct: 75 DAAEYSVMTTGG 86
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 40.4 bits (95), Expect = 3e-05
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 2/91 (2%)
Query: 48 GEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPIL 107
G + P +I + GD++ + + W K E+ + S
Sbjct: 1 GSSGSSGPVLIVTPLEDQQVFVGDRVEMAVEVSEEGAQVM-WMKNGVELTREDSFKARYR 59
Query: 108 LDNAYKIHMKLTIKAVTKQDFGAYKCVSKNS 138
K H L V ++D G Y+ ++
Sbjct: 60 FKKDGKRH-ILIFSDVVQEDRGRYQVITNGG 89
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 40.7 bits (95), Expect = 3e-05
Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 9/90 (10%)
Query: 67 AMEGDQMTLECHSEAYPKSIN---YWTKENGEIIAQGSKYEPILLDNAYKIHMK-----L 118
G+ +T +A W K +A + + + L ++ H + +
Sbjct: 19 VKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAG-KHLQLKETFERHSRVYTFEM 77
Query: 119 TIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
I G Y+C S L
Sbjct: 78 QIIKAKDNFAGNYRCEVTYKDKFDSCSFDL 107
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 42.5 bits (99), Expect = 4e-05
Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 67 AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQ 126
G T +C + + + + ++ K + ++ + + TK+
Sbjct: 176 VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKV--TSSRRFIASFNVVNTTKR 233
Query: 127 DFGAYKCVSKNSLGDTDGSI 146
D G Y+C+ + G +
Sbjct: 234 DAGKYRCMIRTEGGVGISNY 253
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 41.4 bits (97), Expect = 4e-05
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
P + + G +TL C S + + KE + E A +
Sbjct: 100 KPTLSALPSPL-VTSGKSVTLLCQSRSPMDTF-LLCKERAAHPLLCLRSEH----GAQQH 153
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNS 138
+ + VT G Y+C S +
Sbjct: 154 QAEFPMSPVTSVHGGTYRCFSSHG 177
Score = 30.2 bits (68), Expect = 0.33
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 4 QGQNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENG 48
G P + + G +TL C S + + KE
Sbjct: 95 TGAYSKPTLSALPSPL-VTSGKSVTLLCQSRSPMDTF-LLCKERA 137
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 41.1 bits (96), Expect = 5e-05
Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 20/93 (21%)
Query: 65 VGAMEGDQMTLECHSEAYPKSIN----YWTKENGEIIA-------QGSKY----EPILLD 109
V + TL C + + YW KE ++ +Y + +
Sbjct: 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN 63
Query: 110 NAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDT 142
N + I A+ D G Y+CV D
Sbjct: 64 NLS-----IVILALRPSDEGTYECVVLKYEKDA 91
Score = 40.4 bits (94), Expect = 1e-04
Identities = 15/111 (13%), Positives = 28/111 (25%), Gaps = 4/111 (3%)
Query: 30 ECHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSE-AYPKSINY 88
EC Y K ++ + + C + +P+
Sbjct: 81 ECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLS 140
Query: 89 WTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139
W + E+ A + Y + KL T + C+ K
Sbjct: 141 WLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHS---FMCLIKYGH 188
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 40.0 bits (93), Expect = 6e-05
Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 14/101 (13%)
Query: 63 QLVGAMEGDQMTLECH--SEAYPKSINYWTKENG----EIIAQGSKYEPI-------LLD 109
Q++ ++ G +T+ C W KE + SK + + D
Sbjct: 18 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWD 77
Query: 110 NAYKIHMKLTIKAVTKQDFGAYKC-VSKNSLGDTDGSIKLY 149
+ +T+ + ++D G Y C + + S S++ Y
Sbjct: 78 DPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFY 118
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 40.6 bits (95), Expect = 7e-05
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 6/90 (6%)
Query: 65 VGAMEGDQMTLECHSEAYPKSIN--YWTKENGE--IIAQGSKYEPILLDNAYKIHMK--L 118
G + L+ S I+ W K + + I + E + YK+ L
Sbjct: 9 TWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTL 68
Query: 119 TIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
IK + D YK ++ G
Sbjct: 69 KIKHLKTDDQDIYKVSIYDTKGKNVLEKIF 98
Score = 36.0 bits (83), Expect = 0.003
Identities = 8/73 (10%), Positives = 17/73 (23%), Gaps = 16/73 (21%)
Query: 68 MEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQD 127
TL C ++ + + L ++ T
Sbjct: 113 WTCINTTLTCEVMNGTDPELNLYQDG----------KHLKLSQ------RVITHKWTTSL 156
Query: 128 FGAYKCVSKNSLG 140
+KC + N +
Sbjct: 157 SAKFKCTAGNKVS 169
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 41.5 bits (96), Expect = 8e-05
Identities = 18/125 (14%), Positives = 33/125 (26%), Gaps = 10/125 (8%)
Query: 25 DQMTLECHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPK 84
DQ + + P Q V + L C E+
Sbjct: 470 DQGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPMESRHA 529
Query: 85 SINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSK-NSLGDTD 143
+ W + + ++ L I+ +T Q +G Y C ++ S
Sbjct: 530 TY-SWRHKENVEQSCEPGHQSPNCI--------LFIENLTAQQYGHYFCEAQEGSYFREA 580
Query: 144 GSIKL 148
+L
Sbjct: 581 QHWQL 585
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 39.9 bits (93), Expect = 1e-04
Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 24/109 (22%)
Query: 61 QNQLVGAMEGDQMTLECHSEAYPKSIN------YWTKE----------NGEIIA--QGSK 102
+ A+ GD+ L C N W + NG+ Q +
Sbjct: 12 PGHPIRALVGDEAELPCR---ISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPE 68
Query: 103 YEPILLDNAYKIH---MKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
Y I + L I+ V D G Y C ++ + +++L
Sbjct: 69 YRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 117
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 39.0 bits (91), Expect = 1e-04
Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 26/119 (21%)
Query: 49 EIIAQVPPMIWIQNQLVGAMEGDQMTLECH---SEAYPKSINY--WTKEN-GEIIAQGSK 102
+++ Q P V GD +TL C+ ++ W + +A +
Sbjct: 1 DVVVQAPTQ-------VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQ 53
Query: 103 YEPILLDNAYKIHMK------------LTIKAVTKQDFGAYKC-VSKNSLGDTDGSIKL 148
+ + ++ L + + +D G Y C G I L
Sbjct: 54 TQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWL 112
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 39.8 bits (93), Expect = 2e-04
Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Query: 55 PPMIWIQ-NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYK 113
P +W + ++ +G +TL C ++ Y + ++ L+
Sbjct: 5 KPTLWAEPGSVI--TQGSPVTLRCQGG--QETQEYRLYREKKTAPWITRIPQELVKKG-- 58
Query: 114 IHMKLTIKAVTKQDFGAYKC 133
+ I ++T + G Y+C
Sbjct: 59 ---QFPIPSITWEHTGRYRC 75
Score = 39.8 bits (93), Expect = 2e-04
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
P + Q V G +TL+C S+ KE + Q +P
Sbjct: 101 KPTLSAQPSPV-VNSGGNVTLQCDSQVAFDGF-ILCKEGEDEHPQCLNSQP---HARGSS 155
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNS 138
++ V+ Y+C + +S
Sbjct: 156 RAIFSVGPVSPSRRWWYRCYAYDS 179
Score = 28.7 bits (64), Expect = 1.0
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 4 QGQNVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQV 54
G + P + Q V G +TL+C S+ KE + Q
Sbjct: 96 TGAYIKPTLSAQPSPV-VNSGGNVTLQCDSQVAFDGF-ILCKEGEDEHPQC 144
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 38.8 bits (90), Expect = 2e-04
Identities = 20/100 (20%), Positives = 29/100 (29%), Gaps = 16/100 (16%)
Query: 65 VGAMEGDQMTLECHSEAYPKSIN--YWTKE--------------NGEIIAQGSKYEPILL 108
V + G +TL C + I W NG + L
Sbjct: 7 VQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLK 66
Query: 109 DNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
N + ++ LTI+ D G Y CV + L
Sbjct: 67 GNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYML 106
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 39.4 bits (92), Expect = 2e-04
Identities = 24/173 (13%), Positives = 38/173 (21%), Gaps = 57/173 (32%)
Query: 9 PPMIWIQ-NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI--------IAQV----- 54
P + + LV +TL C + K + I +
Sbjct: 8 KPSLQALPSSLV--PLEKPVTLRCQGPP-GVDLYRLEKLSSSRYQDQAVLFIPAMKRSLA 64
Query: 55 -----------------------------PPMIWIQNQLVGAMEGDQMTLECHSEAYPKS 85
P + Q G +TL+C +
Sbjct: 65 GRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPA-VSSGGDVTLQCQTRYGFDQ 123
Query: 86 INYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNS 138
KE + + I VT G Y+C S +S
Sbjct: 124 F-ALYKEGDPAPYKNPERWY---------RASFPIITVTAAHSGTYRCYSFSS 166
Score = 37.1 bits (86), Expect = 0.001
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 19/87 (21%)
Query: 55 PPMIWIQ-NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYK 113
P + + LV +TL C + K + S+Y+ D A
Sbjct: 8 KPSLQALPSSLV--PLEKPVTLRCQGPP-GVDLYRLEKLS------SSRYQ----DQA-- 52
Query: 114 IHMKLTIKAVTKQDFGAYKCVSKNSLG 140
L I A+ + G Y+C +N
Sbjct: 53 ---VLFIPAMKRSLAGRYRCSYQNGSL 76
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 39.5 bits (91), Expect = 2e-04
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 67 AMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTK- 125
++ G + L C YP S W N + I + I D + L++K ++
Sbjct: 125 SISGTTVILTC--PQYPGSEILWQH-NDKNIGGDEDDKNIGSDEDH-----LSLKEFSEL 176
Query: 126 QDFGAYKCVSKNSLGDTDGSIKLY 149
+ G Y C + S + D + LY
Sbjct: 177 EQSGYYVCYPRGSKPE-DANFYLY 199
Score = 32.9 bits (74), Expect = 0.043
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 15/74 (20%)
Query: 69 EGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDF 128
E + L C +EA K+I W K +G++I ++ + K + + K
Sbjct: 17 EDGSVLLTCDAEA--KNIT-WFK-DGKMIGFLTEDK-----------KKWNLGSNAKDPR 61
Query: 129 GAYKCVSKNSLGDT 142
G Y+C +
Sbjct: 62 GMYQCKGSQNKSKP 75
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 37.9 bits (88), Expect = 3e-04
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 63 QLVGAMEGDQMTLECHSEAYPKSIN-YWTK-ENGEIIAQGSKYEPILLDNAYK--IHMK- 117
+ A G +TL+ H + W +N +I+ + ++ +K ++++
Sbjct: 11 PDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEE 70
Query: 118 ----LTIKAVTKQDFGAYKC 133
L I V K+D G Y
Sbjct: 71 NNGALHISNVRKEDKGTYYM 90
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 37.5 bits (87), Expect = 4e-04
Identities = 14/99 (14%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 63 QLVGAMEGDQMTLECH-SEAYPKSINYWTKENG----EIIAQGSKYEPI------LLDNA 111
+ V G ++++C + + YW + + I + + D+
Sbjct: 4 RTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSP 63
Query: 112 YKIHMKLTIKAVTKQDFGAYKCV--SKNSLGDTDGSIKL 148
+ +T++ +T++D G Y C + D +++
Sbjct: 64 ANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEV 102
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 37.4 bits (87), Expect = 4e-04
Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 16/106 (15%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY--W-----TKENGEIIAQGSKYEP 105
Q P + + G+ +T+ C ++ W + N E I++G +Y
Sbjct: 5 QTPRSVTKE-------TGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRY-V 56
Query: 106 ILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGK 151
+++ K L I +T +D G Y+C + G D ++
Sbjct: 57 ETVNSGSK-SFSLRINDLTVEDGGTYRCGLGVAGGYCDYALCSSRY 101
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 38.3 bits (89), Expect = 5e-04
Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 5/84 (5%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
P + V G+ +TL+C S T+E ++ + + +
Sbjct: 100 KPTLSALPSPVVTS-GENVTLQCGSRLRFDRF-ILTEEGDHKLSWTLDSQLT---PSGQF 154
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNS 138
+ VT +C
Sbjct: 155 QALFPVGPVTPSHRWMLRCYGSRR 178
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 38.2 bits (88), Expect = 6e-04
Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 17/105 (16%)
Query: 61 QNQLVGAMEGDQMTLECHSEAYPKSINY-WTKENGE------IIAQGSKYEPILLDNAYK 113
LV M G + L+C W + A+ E + + +
Sbjct: 6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTR 65
Query: 114 I---------HMKLTIKAVTKQDFGAYKC-VSKNSLGDTDGSIKL 148
+L + D Y C V + G + + +L
Sbjct: 66 GRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARL 110
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 36.9 bits (86), Expect = 7e-04
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 16/104 (15%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWT-------KENGEIIAQGSKYEP 105
Q P I + G+ +T+ C ++ N E I+ G +Y
Sbjct: 5 QTPQRITKE-------TGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRY-V 56
Query: 106 ILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLY 149
++ K L I +T +D G Y+C ++ G D
Sbjct: 57 ETVNRGSK-SFSLRINDLTVKDSGTYRCKPESRYGSYDAVCAAL 99
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 36.8 bits (85), Expect = 9e-04
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 15/99 (15%)
Query: 65 VGAMEGDQMTLECH-SEAYPKSINYWTKE-------NGEIIA-QGSKYEPI------LLD 109
V + G +TL C S + W + +I G + L
Sbjct: 7 VKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKG 66
Query: 110 NAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ + + LTI+ + D G Y C + D +
Sbjct: 67 HISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTF 105
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 37.8 bits (87), Expect = 0.001
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 69 EGDQMTLECHSE-AYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQD 127
+ + LEC S YP+ W+ GE I Y + + ++
Sbjct: 132 KDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRG---SS 188
Query: 128 FGAYKCVSKNSLG 140
C ++SL
Sbjct: 189 GEGVSCTIRSSLL 201
Score = 35.1 bits (80), Expect = 0.007
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 18/105 (17%)
Query: 62 NQLVGAMEGDQMTLECH---------------SEAYPKSINYWTKENGEIIAQGSKYEP- 105
+ + AM G+ L CH S + + +N + Q + Y
Sbjct: 11 SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGR 70
Query: 106 --ILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
IL D L I VT D G Y C ++ ++L
Sbjct: 71 TSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVEL 115
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 36.4 bits (84), Expect = 0.001
Identities = 13/90 (14%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 63 QLVGAMEGDQMTLECH-SEAYPKSINYWTKENGE----IIAQGSKYEP-----ILLDNAY 112
+++ A G + ++CH K+ W + E +++ L +
Sbjct: 5 EVLQAPVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLG 64
Query: 113 KIHMKLTIKAVTKQDFGAYKCVSKNSLGDT 142
+++ + + ++D G Y C+ + G
Sbjct: 65 GGLLQVEMVTLQEEDAGEYGCMVDGARGPQ 94
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 36.5 bits (84), Expect = 0.001
Identities = 24/117 (20%), Positives = 35/117 (29%), Gaps = 30/117 (25%)
Query: 17 QLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQMTLE 76
+ G +TL CH Y + M W + G +
Sbjct: 4 DTIIGFLGQPVTLPCH---------YLSWSQS-----RNSMCWGK--------GSCPNSK 41
Query: 77 CHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKC 133
C++E T I + +KY LL + LTI + D G Y C
Sbjct: 42 CNAELL------RTDGTRIISRKSTKYT--LLGKVQFGEVSLTISNTNRGDSGVYCC 90
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 36.5 bits (84), Expect = 0.001
Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 16/99 (16%)
Query: 65 VGAMEGDQMTLECH---SEAYPKSINYWTKENG---EIIAQGSKYEPILLDNAYK--IHM 116
V + ++C Y + + W +G I + Y+ + +
Sbjct: 11 VTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKV 70
Query: 117 K--------LTIKAVTKQDFGAYKCVSKNSLGDTDGSIK 147
L I + D Y C D + I+
Sbjct: 71 SHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIR 109
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 37.0 bits (85), Expect = 0.002
Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 20/136 (14%)
Query: 13 WIQNQLVGAMEGDQM---TLECHSEAYPKSINYWTKENGEIIAQVPPM-IWIQNQLVGAM 68
W+ QLV E + C I P + +
Sbjct: 51 WLARQLVDIREPETQPVCFFRCARRTLQARGL--------IRTFQRPDRVELMPLPPWQP 102
Query: 69 EGDQMTLECHSE-AYPK---SINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVT 124
G+ TL C A P+ ++ + E+I + EP A + T+ A
Sbjct: 103 VGENFTLSCRVPGAGPRASLTLT-LLRGAQELIRRSFAGEPPRARGA---VLTATVLARR 158
Query: 125 KQDFGAYKCVSKNSLG 140
+ + C ++ L
Sbjct: 159 EDHGANFSCRAELDLR 174
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 37.0 bits (85), Expect = 0.002
Identities = 12/130 (9%), Positives = 33/130 (25%), Gaps = 4/130 (3%)
Query: 31 CHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECH-SEAYPKSIN-- 87
C + TK+ + + + T+ C + P
Sbjct: 89 CQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQ 148
Query: 88 -YWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSI 146
W++ +G+ + ++ E + + L + + Y+C +
Sbjct: 149 LTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMR 208
Query: 147 KLYGKKKKKK 156
+
Sbjct: 209 STTKTSGPRA 218
Score = 28.9 bits (64), Expect = 1.0
Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 2/66 (3%)
Query: 70 GDQMTLECH-SEAYPKSIN-YWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQD 127
+ L C S P +I W ++ + S +LT+
Sbjct: 24 PPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLS 83
Query: 128 FGAYKC 133
Y C
Sbjct: 84 DRTYTC 89
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 36.4 bits (84), Expect = 0.002
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 11/84 (13%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
P + + G+++T C + KE Q +
Sbjct: 102 TPTLSVHPGPEVIS-GEKVTFYCRLDTATSMF-LLLKEGRSSHVQRGYGKV--------- 150
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNS 138
+ + VT G Y+C +
Sbjct: 151 QAEFPLGPVTTAHRGTYRCFGSYN 174
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 35.2 bits (81), Expect = 0.004
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 23/109 (21%)
Query: 63 QLVGAMEGDQMTLECHSEAYPKSIN----YWTKENGE-------IIAQGSKYEPILLDNA 111
+++ +G+ L C P+ W + II
Sbjct: 13 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPD 72
Query: 112 YK--IHMK----------LTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
K +H + + + D G Y+C K + G + I L
Sbjct: 73 LKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHL 121
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.9 bits (82), Expect = 0.004
Identities = 12/60 (20%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 145 SIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKK----------KKKKKKKKKKKVKEKKW 194
SI+ + ++++K+ +E + K ++E ++K KK ++ +K K ++ +K +
Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 145
Score = 33.2 bits (75), Expect = 0.031
Identities = 9/39 (23%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+ +E E ++K +EE +K+ ++ K +++ +EK
Sbjct: 78 DRLTQEPES-IRKWREEQRKRLQELDAASKVMEQEWREK 115
Score = 26.3 bits (57), Expect = 6.5
Identities = 18/122 (14%), Positives = 36/122 (29%), Gaps = 55/122 (45%)
Query: 71 DQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGA 130
D++T E P+SI W +E + + + D
Sbjct: 78 DRLTQE------PESIRKWREEQRKRLQ--------------------------ELD--- 102
Query: 131 YKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
K ++E +K KK EE +++ ++ +K K +
Sbjct: 103 --------------------AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
Query: 191 EK 192
+
Sbjct: 143 KA 144
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 36.4 bits (83), Expect = 0.004
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+K KK + KK KK K KK KK KK +KK
Sbjct: 364 EKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKK 406
Score = 36.4 bits (83), Expect = 0.004
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK ++KK K+ KK ++ KK KK KK EKK
Sbjct: 369 GKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKK 411
Score = 34.8 bits (79), Expect = 0.014
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K + + E+K K+ +KK KK KK KK V +K
Sbjct: 353 KAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKA 395
Score = 33.7 bits (76), Expect = 0.026
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K + K +++ K ++++GKK KK KK KK K
Sbjct: 353 KAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATK 399
Score = 32.9 bits (74), Expect = 0.056
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ K ++K KK ++KK + KK KK KK +K
Sbjct: 359 EAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKP 401
Score = 32.5 bits (73), Expect = 0.081
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++K K+ +K KK KK KK KK KK K
Sbjct: 363 EEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADK 405
Score = 32.2 bits (72), Expect = 0.083
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
GKK KK K+ V KK KK KK +KK + K
Sbjct: 377 GKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEK 417
Score = 31.8 bits (71), Expect = 0.13
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KL K + K ++ ++ ++KK KK KK KK V KK
Sbjct: 348 KLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKK 394
Score = 31.4 bits (70), Expect = 0.18
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ K ++K K ++K+ K KK KK KK KK
Sbjct: 358 LEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKK 400
Score = 31.0 bits (69), Expect = 0.21
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+ KK K+ +K V KK KK KK +KK ++K
Sbjct: 373 RRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
Score = 31.0 bits (69), Expect = 0.26
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 142 TDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKK---KKKKKKKKKVKEKK 193
+ + ++KK KK K KK GKK KK KK +KK E+K
Sbjct: 363 EEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEK 417
Score = 29.1 bits (64), Expect = 0.90
Identities = 19/79 (24%), Positives = 29/79 (36%)
Query: 107 LLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKK 166
+L A +++ A + K V G + KK KK K+ K
Sbjct: 340 ILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATK 399
Query: 167 KKEEGKKKKKKKKKKKKKK 185
K KK +KK ++KK
Sbjct: 400 KPAADKKPAEKKPTTEEKK 418
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 34.6 bits (79), Expect = 0.004
Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 11/96 (11%)
Query: 52 AQVPPMIWIQNQL--VGAMEGDQMTLECH-SEAYPKSINYWTKENGEIIAQGSKYEPILL 108
+ + L V +G+ S + W E+ + + +
Sbjct: 3 SGSSGTARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT---WFLNGEELKSNEPEGQVEPG 59
Query: 109 DNAYKIHMK-----LTIKAVTKQDFGAYKCVSKNSL 139
Y+I K L + AV QD GA S +
Sbjct: 60 ALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGV 95
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 36.0 bits (84), Expect = 0.004
Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 146 IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKK----KKKKKKKKKKKVKEKKW 194
I ++ K + ++ E++ K+E+ + ++++KK K KKV++ W
Sbjct: 211 IYVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVW 263
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 35.3 bits (81), Expect = 0.005
Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 14/93 (15%)
Query: 63 QLVGAMEGDQMTLECH--SEAYPKSINYWTKENGEI---IAQGSKYEPI-LLDNAYKIHM 116
+V + G+ +TL + I W + + +K I + + +
Sbjct: 6 LMVNGILGESVTLPLEFPAGEKVNFI-TWLFNETSLAFIVPHETKSPEIHVTNPKQGKRL 64
Query: 117 K------LTIKAVTKQDFGAYKC-VSKNSLGDT 142
L + + +D G+Y+ +S +
Sbjct: 65 NFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKL 97
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 35.6 bits (81), Expect = 0.006
Identities = 15/134 (11%), Positives = 33/134 (24%), Gaps = 16/134 (11%)
Query: 23 EGDQMTLECHSE--AYPKSINYWTKENGEIIAQV---PPMIWIQNQLVGAMEGDQMTLEC 77
+ C +E P+ + + + Q P Q T+ C
Sbjct: 151 DHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVC 210
Query: 78 HSEAYP---KSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCV 134
+ ++ + + + + A +VT +D G +
Sbjct: 211 SLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKA--------SVSVTAEDEGTQRLT 262
Query: 135 SKNSLGDTDGSIKL 148
LG+
Sbjct: 263 CAVILGNQSQETLQ 276
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 35.2 bits (81), Expect = 0.007
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 11/84 (13%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
P + + G+++T C + KE Q +
Sbjct: 99 TPTLSVHPGPEVIS-GEKVTFYCRLDTATSMF-LLLKEGRSSHVQRGYGKV--------- 147
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNS 138
+ + VT G Y+C +
Sbjct: 148 QAEFPLGPVTTAHRGTYRCFGSYN 171
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 34.4 bits (79), Expect = 0.007
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 9/83 (10%)
Query: 69 EGDQMTLECHSEAYPKSINY--W-----TKENGEIIAQGSKYEPILLDNAYKIHMKLTIK 121
G+ +T+ C + W N + I+ G +Y ++ K L I
Sbjct: 14 TGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVE-TVNKGSK-SFSLRIS 71
Query: 122 AVTKQDFGAYKCVSKNSLGDTDG 144
+ +D G YKC + D
Sbjct: 72 DLRVEDSGTYKCQAFYVFFAEDV 94
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 35.3 bits (81), Expect = 0.007
Identities = 17/121 (14%), Positives = 32/121 (26%), Gaps = 4/121 (3%)
Query: 31 CHSEAYPKSINYWTKENGEII--AQVPPMIWIQNQLVGAMEGDQMTLECHSEAY-PKSIN 87
C + G + P + A ++ C S + P+ I
Sbjct: 91 CVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDIT 150
Query: 88 Y-WTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSI 146
W K E+ + +P+ +Y IH + + C + D
Sbjct: 151 LKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLR 210
Query: 147 K 147
Sbjct: 211 G 211
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 35.2 bits (80), Expect = 0.008
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
++KK+ K+ KK + +KKKK+ K K K++++ K
Sbjct: 68 PPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALK 109
Score = 34.4 bits (78), Expect = 0.013
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++KK+ ++ K KK + ++KKKK+ K K K++ K
Sbjct: 66 RPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALK 109
Score = 34.4 bits (78), Expect = 0.013
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
+ ++KK+ K+ K K+ ++KKKK+ K K K+ +
Sbjct: 65 PRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQR 105
Score = 33.6 bits (76), Expect = 0.022
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ + ++K++ K+ + K K ++KKKK+ K K K ++
Sbjct: 63 PRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQR 105
Score = 33.6 bits (76), Expect = 0.024
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
+ ++K++ K K ++ K ++KKKK+ K K K
Sbjct: 64 RPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGK 102
Score = 33.6 bits (76), Expect = 0.030
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+ + + + KK+ + K KK K ++KKKK+ K K
Sbjct: 58 TRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTK 99
Score = 32.5 bits (73), Expect = 0.067
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+ + ++K+ K+ + KK K ++KKKK+ K K ++
Sbjct: 62 NPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKR 103
Score = 32.1 bits (72), Expect = 0.086
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ + + + +KK+ + K KK K ++KKKK+ + K
Sbjct: 58 TRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTK 99
Score = 30.5 bits (68), Expect = 0.25
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
L + + + + + ++K++ K+ K KK K ++KKK + K
Sbjct: 51 ALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAK 97
Score = 30.5 bits (68), Expect = 0.28
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 149 YGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
G+ + + ++KK+ K+ K KK K ++KKKK K
Sbjct: 54 IGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKT 98
Score = 29.4 bits (65), Expect = 0.57
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK+ K+ K KK K ++++ K+ K K K+++ K++ +
Sbjct: 72 KKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 35.3 bits (81), Expect = 0.008
Identities = 17/80 (21%), Positives = 35/80 (43%)
Query: 109 DNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKK 168
+ A K + K+ G + ++ + + +L + K+++++ +
Sbjct: 32 EEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGD 91
Query: 169 EEGKKKKKKKKKKKKKKKKK 188
+G KKKKKKKKK+ K
Sbjct: 92 GDGATGKKKKKKKKKRGPKV 111
Score = 35.3 bits (81), Expect = 0.010
Identities = 17/74 (22%), Positives = 30/74 (40%)
Query: 117 KLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKK 176
K K +K A + G + + ++ + KE+++ + +G
Sbjct: 38 KRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATG 97
Query: 177 KKKKKKKKKKKKVK 190
KKKKKKKKK+
Sbjct: 98 KKKKKKKKKRGPKV 111
Score = 34.9 bits (80), Expect = 0.014
Identities = 14/73 (19%), Positives = 30/73 (41%)
Query: 121 KAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKK 180
+ K+ G + ++ S+ ++ ++ E +++ + ++ K
Sbjct: 39 RRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGK 98
Query: 181 KKKKKKKKVKEKK 193
KKKKKKKK K
Sbjct: 99 KKKKKKKKRGPKV 111
Score = 31.8 bits (72), Expect = 0.11
Identities = 11/60 (18%), Positives = 23/60 (38%)
Query: 135 SKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
S + D + ++ + + K++ E+ + KKKKK K+K+
Sbjct: 49 SAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRG 108
Score = 31.8 bits (72), Expect = 0.14
Identities = 14/76 (18%), Positives = 24/76 (31%)
Query: 119 TIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKK 178
T + K+ K S K G + ++ E+ + KE + +
Sbjct: 30 TAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGD 89
Query: 179 KKKKKKKKKKVKEKKW 194
KK K+KK
Sbjct: 90 GDGDGATGKKKKKKKK 105
Score = 28.7 bits (64), Expect = 1.1
Identities = 18/104 (17%), Positives = 32/104 (30%)
Query: 80 EAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSL 139
A +N + S E K A +Q+ S + +
Sbjct: 8 AASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEV 67
Query: 140 GDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKK 183
L K++ + ++ + + KKKKKKK+ K
Sbjct: 68 ARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 27.6 bits (61), Expect = 3.0
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ ++ E KKK++KKKK K E++
Sbjct: 19 DPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQE 55
Score = 27.2 bits (60), Expect = 3.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 156 KKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++E+ EE KKK++KKKK K +++
Sbjct: 19 DPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEP 56
Score = 26.4 bits (58), Expect = 7.1
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
+ + +++ ++ KKK++KKKK K
Sbjct: 8 AASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSK 46
Score = 26.0 bits (57), Expect = 9.3
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ + + + ++ KKK++KKKK K +
Sbjct: 11 GSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGE 53
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 35.2 bits (80), Expect = 0.010
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 121 KAVTKQDFGAYKCVSKNSLGDTDGSIKL--YGKKKKKKKKEKEKKVKKKKEEGKKKKKKK 178
V KN L + + KL K K++ K+ + K K++ K +K
Sbjct: 306 SVVKVAGTTETHERKKNPLTNNNALFKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKA 365
Query: 179 KKKKKKKKKKVKEKK 193
K KK +
Sbjct: 366 AKTHKKGSQAWIAAF 380
Score = 32.9 bits (74), Expect = 0.049
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K + K +++ +K ++ K KK + K +E
Sbjct: 346 KAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAI 388
Score = 31.7 bits (71), Expect = 0.13
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K + K K++ K +K + KK + K ++ K
Sbjct: 345 KKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKA 391
Score = 31.7 bits (71), Expect = 0.15
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K++ K K K K+ + K ++ K +++
Sbjct: 353 AKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQED 395
Score = 31.3 bits (70), Expect = 0.17
Identities = 6/43 (13%), Positives = 14/43 (32%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ K ++ K KK + K ++ K ++
Sbjct: 356 QATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADF 398
Score = 29.4 bits (65), Expect = 0.67
Identities = 7/43 (16%), Positives = 15/43 (34%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ K K K KK + K ++ K + ++
Sbjct: 355 RQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDAD 397
Score = 29.4 bits (65), Expect = 0.72
Identities = 6/43 (13%), Positives = 15/43 (34%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K K++ K + K + + K ++ K ++
Sbjct: 351 SKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQ 393
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 34.5 bits (79), Expect = 0.010
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
EKE+ V K +EE +KKK +KK KK+K +E
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 28.0 bits (62), Expect = 1.8
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 161 EKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
E + +K++ K +++ +KKK +KK+K++K
Sbjct: 147 EMILTEKEQIVPKPEEEVAQKKKISQKKLKKQK 179
Score = 26.0 bits (57), Expect = 7.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKK 183
K++ K +E+ +KKK KK KK+K ++
Sbjct: 153 KEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 34.5 bits (78), Expect = 0.010
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 12/98 (12%)
Query: 53 QVPPM-IWIQNQLVGAMEGDQMTLEC-HSEAYPKSINYWTKENGEIIAQGSKYEPILLDN 110
QV P+ + +V G L C + A + W + + D
Sbjct: 4 QVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRG-------LDTSLGAVQSDT 56
Query: 111 AYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ LT++ + G CV +++L
Sbjct: 57 GRSV---LTVRNASLSAAGTRVCVGSCGGRTFQHTVQL 91
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 33.3 bits (76), Expect = 0.013
Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 20/103 (19%)
Query: 63 QLVGAMEGDQMTLECH------SEAYPKSINYWTKENG----EIIAQGSKYEPI------ 106
+ V ++EG+ +++ C+ + K YW ++ + Y
Sbjct: 8 EEVNSVEGNSVSITCYYPPTSVNRHTRK---YWCRQGARGGCITLISSEGYVSSKYAGRA 64
Query: 107 -LLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L + + I +++ D G YKC + + L
Sbjct: 65 NLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSL 107
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 34.3 bits (78), Expect = 0.019
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++Y K ++ + K KKE KK+ + K +KK +V +KK
Sbjct: 238 EMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKK 284
Score = 29.2 bits (65), Expect = 0.72
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+KK KK+ K+K+ + K +KK + +KK + +
Sbjct: 253 YEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQER 293
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 34.4 bits (78), Expect = 0.021
Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 106 ILLDNAYKIHMKLTIKAVTKQDFGAY----KCVSKNSLGDTDGSIKLYGKKKKKKKKEKE 161
I + + + K + K+D +Y + S + ++ + K + K+ +
Sbjct: 770 IGIRGSDQAIPKFQMNCYAKEDAFSYPRMYEEASGKEVEKVATAVLSTTARAKARAKKTK 829
Query: 162 KKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+ +EE KK+ ++K+K+++ KK +KE K
Sbjct: 830 KEKGPNEEEKKKEHEEKEKERETNKKGIKETK 861
Score = 33.6 bits (76), Expect = 0.038
Identities = 11/43 (25%), Positives = 27/43 (62%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K + KK +KEK +++++ + ++K+K+++ KK K ++
Sbjct: 821 AKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKEN 863
Score = 32.9 bits (74), Expect = 0.070
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ KK KKEK ++KK+E ++K+K+++ KK K+ + +
Sbjct: 823 ARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDE 865
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 32.6 bits (74), Expect = 0.021
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 17/86 (19%)
Query: 65 VGAMEGDQMTLECH-SEAYPKSINY---------WTKENGEIIAQGSKYEPILLDNAYKI 114
G L C + ++ W++ E++ + + Y++
Sbjct: 4 YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQL 63
Query: 115 H-------MKLTIKAVTKQDFGAYKC 133
+ L IK VT D G Y C
Sbjct: 64 KGDLNKGDVSLIIKNVTLDDHGTYCC 89
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 32.8 bits (75), Expect = 0.022
Identities = 14/105 (13%), Positives = 36/105 (34%), Gaps = 17/105 (16%)
Query: 61 QNQLVG-----AMEGDQMTLECH-SEAYPKSINYWTKENGE-----IIAQGSKYEPI--- 106
++ + G E +T++C + + YW + + ++ + + +
Sbjct: 2 EDPVTGPEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKN 61
Query: 107 ---LLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
+ DN +T++ + D G Y C D + +
Sbjct: 62 RVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTV 106
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 34.0 bits (77), Expect = 0.023
Identities = 15/63 (23%), Positives = 18/63 (28%), Gaps = 8/63 (12%)
Query: 136 KNSLGDTDGSIKLYGKKKKKKK--------KEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
L + L KK K KE K K + KK K +K K
Sbjct: 250 SKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAK 309
Query: 188 KVK 190
K
Sbjct: 310 VDK 312
Score = 32.5 bits (73), Expect = 0.061
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
K+ K K+ K KK + +K K K K
Sbjct: 280 KEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKS 317
Score = 32.1 bits (72), Expect = 0.10
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 6/95 (6%)
Query: 101 SKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEK 160
S Y P L + +KL + + + K + + + K K K+
Sbjct: 238 SDYIPKELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKN 297
Query: 161 EKKVKKKKEEGKKKKKKKK------KKKKKKKKKV 189
K +K K K K K KK K+
Sbjct: 298 SKMTAAQKALAKVDKSGMKSIDAFFGAKNKKTGKI 332
Score = 30.6 bits (68), Expect = 0.33
Identities = 12/50 (24%), Positives = 15/50 (30%), Gaps = 7/50 (14%)
Query: 149 YGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKK-----KKKVKEKK 193
Y K K K +K K +K K K K K K+
Sbjct: 283 YTKFNTKDLKTGKKNSKMTA--AQKALAKVDKSGMKSIDAFFGAKNKKTG 330
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 33.6 bits (76), Expect = 0.024
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
KK + +K ++ K +++K + K++K + K +K E
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAE 51
Score = 29.7 bits (66), Expect = 0.53
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK ++++ + K ++ + K++K + K K
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAA 50
Score = 29.4 bits (65), Expect = 0.59
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK + EK +K K ++ + + K++K + K + +
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAE 51
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 32.6 bits (74), Expect = 0.026
Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 23/112 (20%)
Query: 60 IQNQLVGAMEGDQMTLECH--SEAYPKSINY--WTK--------ENGEIIAQGSKYEPIL 107
++ V G Q+TL C S + W + A+G Y +
Sbjct: 4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEV 63
Query: 108 LDNAYKIHMK---------LTIKAVTKQDFGAYKCVSKNS--LGDTDGSIKL 148
+I + I + D G + C KN + + L
Sbjct: 64 GTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTL 115
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 33.0 bits (75), Expect = 0.029
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
EKE+ V K E+ + +++ + +K++
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKRIA 183
Score = 26.5 bits (58), Expect = 5.7
Identities = 5/34 (14%), Positives = 16/34 (47%)
Query: 146 IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKK 179
+ + K++ K ++K V+ + + +K+
Sbjct: 148 LVVTEKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
Score = 25.7 bits (56), Expect = 9.9
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKK 180
K++ K EKKV + + + +K+
Sbjct: 153 KEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 33.3 bits (77), Expect = 0.033
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 146 IKLYGKKKKKKK-KEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
I L + ++ K K ++ KK + V++K
Sbjct: 226 IYLLHENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKVK 275
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 33.3 bits (75), Expect = 0.034
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK K ++K E+ ++ K+K+ ++ KE +
Sbjct: 14 KKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYE 56
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 33.3 bits (76), Expect = 0.042
Identities = 5/45 (11%), Positives = 17/45 (37%)
Query: 149 YGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+GK+ +++ E K + + + + + K + +
Sbjct: 631 WGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQ 675
Score = 26.7 bits (59), Expect = 5.8
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 168 KEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+ K+ ++K + KK+ + +
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGR 653
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 31.6 bits (72), Expect = 0.050
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 12/85 (14%)
Query: 55 PPMIWIQ-NQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYK 113
P + + +Q V GD +TL CH + NG + K + D A
Sbjct: 5 QPSLSLHPSQGV--SLGDTVTLRCHLP--RMAAWVQLWLNGTLRFDKEKDKEQ--DAA-- 56
Query: 114 IHMKLTIKAVTKQDFGAYKCVSKNS 138
+ + +D G Y+C + S
Sbjct: 57 ---EFSFAVTNLEDAGTYQCRYQVS 78
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 32.5 bits (74), Expect = 0.069
Identities = 10/43 (23%), Positives = 29/43 (67%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+ +K++E E+K+++ K +K +K++ +K++K+++ +
Sbjct: 380 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNA 422
Score = 31.4 bits (71), Expect = 0.19
Identities = 10/41 (24%), Positives = 27/41 (65%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+K+++ +EK ++ K KE+ +K++ +K++K+++ E
Sbjct: 384 QKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEG 424
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 32.5 bits (73), Expect = 0.069
Identities = 11/46 (23%), Positives = 17/46 (36%)
Query: 149 YGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
Y +K E K ++E K+ K ++ K K K W
Sbjct: 336 YFGTARKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAW 381
Score = 26.0 bits (56), Expect = 8.6
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKK 184
+ K +K+K K+ K EE K K K K
Sbjct: 351 RIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKT 384
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 32.2 bits (72), Expect = 0.071
Identities = 11/49 (22%), Positives = 30/49 (61%)
Query: 145 SIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
SI+ + ++++K+ +E + K ++E ++K KK ++ +++ + EK
Sbjct: 101 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 149
Score = 30.3 bits (67), Expect = 0.31
Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 137 NSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+ G DG + + ++ E ++K +EE +K+ ++ K +++ +EK
Sbjct: 78 EANGPADGYAAIAQADRLTQEPES---IRKWREEQRKRLQELDAASKVMEQEWREK 130
Score = 29.9 bits (66), Expect = 0.39
Identities = 9/47 (19%), Positives = 22/47 (46%)
Query: 146 IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
++ K ++E +K KK EE +++ ++ +K K + +
Sbjct: 113 LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 159
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 32.3 bits (74), Expect = 0.073
Identities = 3/50 (6%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 144 GSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
G ++ ++ + V + ++++ + V + +
Sbjct: 258 GEVRYTLARQGSRT--PSAAVAQLLAAEREQELSDMATLRAFAGNVVKIR 305
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 32.2 bits (73), Expect = 0.080
Identities = 10/101 (9%), Positives = 26/101 (25%), Gaps = 8/101 (7%)
Query: 68 MEGDQMTLEC---HSEAYPKSIN-YWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAV 123
G + C + W ++ E+ + ++ + +L I
Sbjct: 30 GGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVER 89
Query: 124 TKQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKV 164
+ +KC + K + + +V
Sbjct: 90 DWLNGKTFKCKVNSGAFPAPIE----KSISKPEGTPRGPQV 126
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 138
Score = 31.5 bits (71), Expect = 0.084
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKK 184
L K +K +K+ KE+K + KK G KK K KKK
Sbjct: 101 GLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGKKK 138
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 31.8 bits (72), Expect = 0.091
Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 82 YPKSIN-YWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNS 138
+ W N E+ ++ ++ ++ L I+ +KC N
Sbjct: 41 DDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNK 98
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 32.1 bits (73), Expect = 0.10
Identities = 15/112 (13%), Positives = 30/112 (26%), Gaps = 4/112 (3%)
Query: 38 KSINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSIN----YWTKEN 93
K N + E ++ ++ M + C W +
Sbjct: 302 KPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDG 361
Query: 94 GEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGS 145
++ +K ++ Y++ LT+ D YKC N
Sbjct: 362 VQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIE 413
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_P
Length = 149
Score = 31.1 bits (70), Expect = 0.10
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+ G+K ++ KE K K K+ GK K +KK V+ KK
Sbjct: 93 KILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWASVQSKK 139
Score = 26.9 bits (59), Expect = 3.6
Identities = 12/69 (17%), Positives = 25/69 (36%)
Query: 125 KQDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKK 184
+G K + D + Y + +K + + + K+ K+K K+ K
Sbjct: 59 STQYGGGKSTGFALVYDNQQYLLKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGK 118
Query: 185 KKKKVKEKK 193
K+ +K
Sbjct: 119 AITKLLSEK 127
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 30.7 bits (69), Expect = 0.12
Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 14/95 (14%)
Query: 65 VGAMEGDQMTLECH----SEAYPKSINYWTKENG----EIIAQGSKYEPILLDNAYKIHM 116
+ +EG L C W ++ E+ ++ L A +
Sbjct: 17 IRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFL 76
Query: 117 K-----LTIKAVTKQDFGAYKC-VSKNSLGDTDGS 145
L I+ V D Y C V LG G+
Sbjct: 77 HDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTGN 111
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 31.5 bits (71), Expect = 0.13
Identities = 9/98 (9%), Positives = 22/98 (22%), Gaps = 7/98 (7%)
Query: 70 GDQMTLECHSEAYPKSINY---WTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQ 126
L C P + WT+E + + Y + +
Sbjct: 28 SLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWL 87
Query: 127 DFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKV 164
+ C ++ + + L + +
Sbjct: 88 SGERFTC----TVQHEELPLPLSKSVYRNTGPTTPPLI 121
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 31.4 bits (70), Expect = 0.13
Identities = 6/37 (16%), Positives = 20/37 (54%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
+K+K +E K+ ++++ + + + K+ K++
Sbjct: 139 VRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEA 175
Score = 29.5 bits (65), Expect = 0.53
Identities = 6/42 (14%), Positives = 18/42 (42%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
+K+K + K +++ + + K+ K++ + W
Sbjct: 139 VRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNW 180
Score = 27.9 bits (61), Expect = 1.6
Identities = 4/37 (10%), Positives = 18/37 (48%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
+K+K ++ ++ +++ + + K+ K++
Sbjct: 139 VRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEA 175
Score = 27.5 bits (60), Expect = 2.1
Identities = 5/39 (12%), Positives = 21/39 (53%)
Query: 155 KKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+++ E +K + ++ K+ ++++ + + + K+
Sbjct: 128 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQ 166
Score = 27.2 bits (59), Expect = 3.2
Identities = 5/43 (11%), Positives = 22/43 (51%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+++ + ++ + +K +E K+ ++++ + + + K
Sbjct: 128 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPA 170
>2lgz_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3; catalytic domain, oligosaccharyl
transferase; NMR {Saccharomyces cerevisiae}
Length = 273
Score = 31.3 bits (70), Expect = 0.13
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 163 KVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++KK +G+ + + + K + K+
Sbjct: 236 QLKKDDAQGRTLRDVGELTRSSTKTRRSIKR 266
Score = 26.3 bits (57), Expect = 7.1
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKK 183
+ KK + + ++ E + K ++ K+
Sbjct: 236 QLKKDDAQGRTLRDVGELTRSSTKTRRSIKR 266
Score = 26.0 bits (56), Expect = 9.2
Identities = 5/37 (13%), Positives = 17/37 (45%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
+ KK + + + + E + K ++ K+ + ++
Sbjct: 236 QLKKDDAQGRTLRDVGELTRSSTKTRRSIKRPELGLR 272
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 31.6 bits (72), Expect = 0.13
Identities = 9/32 (28%), Positives = 23/32 (71%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKK 182
K+ +K++E E+K+++ K +K +K++ +K+
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.5 bits (69), Expect = 0.29
Identities = 8/35 (22%), Positives = 22/35 (62%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
+ KE +K+ + +++ + K K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.5 bits (69), Expect = 0.32
Identities = 8/35 (22%), Positives = 21/35 (60%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKK 186
+ K+ +K ++ ++K K K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.1 bits (68), Expect = 0.44
Identities = 8/31 (25%), Positives = 23/31 (74%)
Query: 162 KKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K+ +K++E +K ++ K K+K +K++++++
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 29.7 bits (67), Expect = 0.47
Identities = 7/35 (20%), Positives = 21/35 (60%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
+ K+ ++++ ++K K K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 29.7 bits (67), Expect = 0.62
Identities = 8/35 (22%), Positives = 21/35 (60%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+ ++ K+++ E K ++ K K+K +K++ K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 30.2 bits (68), Expect = 0.15
Identities = 11/92 (11%), Positives = 30/92 (32%), Gaps = 15/92 (16%)
Query: 65 VGAMEGDQMTLECH-----SEAYPKSINYWTKENGEII--AQGSKYEPILLDNAYKIHMK 117
+ A + L C +++ + + +W + ++ K + + + Y
Sbjct: 4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTS 63
Query: 118 -------LTIKAVTKQDFGAYKC-VSKNSLGD 141
L + + +D G Y+C +
Sbjct: 64 FDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTG 95
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 31.0 bits (70), Expect = 0.16
Identities = 12/95 (12%), Positives = 29/95 (30%), Gaps = 8/95 (8%)
Query: 74 TLECH---SEAYPKSIN-YWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFG 129
+ C + W ++ E+ +K ++ ++ +L I +
Sbjct: 22 KVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGK 81
Query: 130 AYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKV 164
+KC ++ K K + K +V
Sbjct: 82 EFKCRVNSAAFPAPIE----KTISKTKGRPKAPQV 112
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 31.4 bits (71), Expect = 0.17
Identities = 10/40 (25%), Positives = 25/40 (62%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ K+E E KKK+EE ++ + + + K+++++++ K
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKA 428
Score = 31.0 bits (70), Expect = 0.22
Identities = 8/41 (19%), Positives = 29/41 (70%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ K++ + + KK++EE + + + + K+++++++K+++ K
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAK 429
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 31.2 bits (69), Expect = 0.19
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 16/88 (18%)
Query: 55 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKI 114
+ ++ G+ + L C + + WT + + K
Sbjct: 6 KDVYVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSEVLGSGK------------ 51
Query: 115 HMKLTIKAVTKQDFGAYKCVSKNSLGDT 142
LTI+ D G Y C +
Sbjct: 52 --TLTIQVKEFGDAGQYTCHKGGEVLSH 77
Score = 27.0 bits (58), Expect = 4.6
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 9 PPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQVPPMIWIQN 62
+ ++ G+ + L C + + WT + + + IQ
Sbjct: 6 KDVYVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSEVLGSGKTLTIQV 57
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 31.2 bits (70), Expect = 0.19
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ K ++K K++ KK ++ K K+++ +V K
Sbjct: 248 RADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKI 290
Score = 28.1 bits (62), Expect = 1.9
Identities = 6/43 (13%), Positives = 17/43 (39%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ + +K+ K++ + KK ++ K +E+
Sbjct: 241 TSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERA 283
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 30.7 bits (69), Expect = 0.20
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 74 TLECHSEA-YPKSIN-YWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAY 131
T + + W + E+ +K ++ Y++ LT+ + Y
Sbjct: 45 TCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEY 104
Query: 132 KCVSKNS 138
KC N
Sbjct: 105 KCKVSNK 111
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 31.0 bits (69), Expect = 0.22
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK++ + K K+++KK +K ++K +K K KE +
Sbjct: 42 KKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYR 84
Score = 27.9 bits (61), Expect = 2.2
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
KKK++ E + K +KK K +K ++K +K K ++
Sbjct: 41 KKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYR 84
Score = 26.4 bits (57), Expect = 7.2
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KKK E KK++ + K K+ +KK K + +K
Sbjct: 28 TLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRK 70
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 31.0 bits (70), Expect = 0.23
Identities = 9/41 (21%), Positives = 25/41 (60%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+ +KKK +++ ++++ EE + ++K + +K K+K+
Sbjct: 947 QAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987
Score = 27.5 bits (61), Expect = 3.9
Identities = 10/48 (20%), Positives = 29/48 (60%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
+L KK++ ++ E + + ++EE + ++ + +KKK +++ E++
Sbjct: 917 RLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQL 964
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga
maritima} PDB: 2gaj_A*
Length = 633
Score = 31.0 bits (71), Expect = 0.25
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKK 183
++ K+KK E K+++ E ++KK KK
Sbjct: 204 EIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 30.6 bits (68), Expect = 0.25
Identities = 7/43 (16%), Positives = 19/43 (44%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+++++ +K +K E K + K + ++ E +
Sbjct: 16 LKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYE 58
Score = 29.4 bits (65), Expect = 0.71
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K++++E KK+K +K K + K + + +
Sbjct: 15 ILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGE 56
Score = 28.6 bits (63), Expect = 1.1
Identities = 6/44 (13%), Positives = 18/44 (40%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
K+++++ + K+K K K + K + ++ +
Sbjct: 15 ILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYE 58
Score = 26.7 bits (58), Expect = 4.3
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K EK + K++ E +KK+K +K K + K
Sbjct: 5 AAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTK 44
Score = 26.3 bits (57), Expect = 6.1
Identities = 6/43 (13%), Positives = 21/43 (48%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++++ EK++KV +K + + K + ++ + + +
Sbjct: 19 RREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQD 61
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 30.4 bits (68), Expect = 0.27
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 18/97 (18%)
Query: 70 GDQMTLECH-SEAYPKSIN----YWTKENGE-------IIAQGSKYEP------ILLDNA 111
D +T+ C+ + P +I W ++ G E +
Sbjct: 18 NDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRL 77
Query: 112 YKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIKL 148
L + + ++ G Y+C + G+++L
Sbjct: 78 KSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQL 114
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 30.8 bits (69), Expect = 0.30
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
+KK K+ E+++++ + ++ K++ K KK E
Sbjct: 395 QKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVT 438
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 29.3 bits (66), Expect = 0.31
Identities = 11/87 (12%), Positives = 27/87 (31%), Gaps = 11/87 (12%)
Query: 56 PMIWIQ-NQLVGAMEGDQMTLECHSEA-YPKSINYWTKENGEIIAQGSKYEPILLDNAYK 113
I+ + ++ +G +T+ C + +++G + S
Sbjct: 10 ITIFPNSSLMI--SQGTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPY--KTED-- 63
Query: 114 IHMKLTIKAVTKQDFGAYKCVSKNSLG 140
+ I V + G Y C+ +
Sbjct: 64 ---EFEIGPVNETITGHYSCIYSKGIT 87
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 29.2 bits (66), Expect = 0.35
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
K+ + + K+ +K++ KK K +
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 28.5 bits (64), Expect = 0.55
Identities = 7/46 (15%), Positives = 17/46 (36%)
Query: 142 TDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
+ + + K+ E K+ + +K++ KK K +
Sbjct: 66 SHRAKAILWNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 28.5 bits (64), Expect = 0.69
Identities = 5/34 (14%), Positives = 13/34 (38%)
Query: 160 KEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ K+ + K+ +K++ K+ K
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSK 107
Score = 26.1 bits (58), Expect = 3.7
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+K+ EG + K+ +K++ K K
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKG 108
Score = 25.4 bits (56), Expect = 6.4
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 165 KKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ E + K+ +K++ K +
Sbjct: 81 EVVPEGYEMKRVGDYYVFEKRESKKSKGG 109
Score = 25.0 bits (55), Expect = 9.4
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 156 KKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+V + E K+ +K++ KK +
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 29.5 bits (66), Expect = 0.35
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 118 LTIKAVTKQDFGAYKCVSKNSLGDTDGS 145
LT+ +K++ G Y C ++ S
Sbjct: 87 LTLNKFSKENEGYYFCSVISNSVMYFSS 114
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 30.4 bits (67), Expect = 0.35
Identities = 14/134 (10%), Positives = 30/134 (22%), Gaps = 11/134 (8%)
Query: 15 QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQVPPMIWIQNQLVGAMEGDQMT 74
G L+ P + + + + W + L G
Sbjct: 164 HTPAPRVRLGQDALLDLSFAYMPPTSEAAS--SLAPGPPPFGLEWRRQHL-----GKGHL 216
Query: 75 LECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCV 134
L A +N E + ++ + + + V G Y
Sbjct: 217 LL----AATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLAT 272
Query: 135 SKNSLGDTDGSIKL 148
+++L
Sbjct: 273 IHLPYLQGQVTLEL 286
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 30.3 bits (68), Expect = 0.36
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 134 VSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKK 186
+SK+ G T G + + K K K+ + K KK K K K+ K
Sbjct: 327 LSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 29.1 bits (65), Expect = 0.93
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
K ++K + K KKK K K K+ K
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 28.7 bits (64), Expect = 1.4
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 8/60 (13%)
Query: 142 TDGSIKLYGKKKKKKK--------KEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+K K ++ K K++E + K KKK K K K K
Sbjct: 320 IRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 29.8 bits (66), Expect = 0.40
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 21/100 (21%)
Query: 65 VGAMEGDQMTLECHSEAYPKSIN-------YWTKEN-----GEIIAQGSKYEPI------ 106
V EG + + C +S YW ++ E++A + +
Sbjct: 10 VTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQG 69
Query: 107 ---LLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTD 143
LL + K + L+I +D G+Y +
Sbjct: 70 RFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKY 109
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 30.3 bits (69), Expect = 0.43
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 139 LGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
+G + +LY + KK+ + K+K+K + KK E
Sbjct: 1 MGKAENY-ELYQVELGPGPSGDMAAKMSKKK--AGRGGGKRKEKLENMKKEMEIND 53
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 29.0 bits (65), Expect = 0.45
Identities = 12/96 (12%), Positives = 32/96 (33%), Gaps = 18/96 (18%)
Query: 63 QLVGAMEGDQMTLECH--SEAYPKSINYWTKENG----EIIAQGSKYEP----------- 105
+ EG + ++C E + S W + +A +
Sbjct: 12 EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRII 71
Query: 106 ILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGD 141
+ + + + +++ + + +D G Y+CV +
Sbjct: 72 LEDYHDHGL-LRVRMVNLQVEDSGLYQCVIYQPPKE 106
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 29.9 bits (67), Expect = 0.46
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 74 TLECH-SEAYPKSIN---YWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFG 129
+ C + + W + E+ +K ++ Y++ LT+ +
Sbjct: 22 EVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK 81
Query: 130 AYKCVSKNS 138
YKC N
Sbjct: 82 EYKCKVSNK 90
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 29.6 bits (66), Expect = 0.46
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
G K + E+K K+K + +KKK+ + +K+ +K V++K
Sbjct: 143 HEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKK 188
Score = 27.7 bits (61), Expect = 2.3
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
++K+KEK K +KK++ + +K+ +K +KK K E
Sbjct: 154 ATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEV 195
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 29.5 bits (66), Expect = 0.50
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
+E KV+K+ + KK K KK K
Sbjct: 153 QEVAAKVRKEAPKDAAKKVPKTKKGKLAIG 182
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 29.1 bits (64), Expect = 0.50
Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 30/109 (27%)
Query: 65 VGAMEGDQMTLECH----SEAYPKSINYWTKENG----EIIAQGSKY---EPILLDNAYK 113
V G + L C ++ P I W K + +G+ E + +
Sbjct: 14 VEVHAGGTVELPCSYQLANDTQPPVI-SWLKGASPDRSTKVFKGNYNWQGEGLGFVESDS 72
Query: 114 IHMK-----------------LTIKAVTKQDFGAYKC-VSKNSLGDTDG 144
L + V QD G Y C V++ S+ G
Sbjct: 73 YKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFG 121
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 28.6 bits (64), Expect = 0.53
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 16/96 (16%)
Query: 63 QLVGAMEGDQMTLECH--SEAYPKSINYWTKENG----EIIAQGSKYEP----------I 106
+ EG + ++C E + S W + +A + I
Sbjct: 7 EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRII 66
Query: 107 LLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDT 142
L D +++ + + +D G Y+CV +
Sbjct: 67 LEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEP 102
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.54
Identities = 16/138 (11%), Positives = 33/138 (23%), Gaps = 30/138 (21%)
Query: 42 YW-----TKENGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEI 96
+W ++ +L+ ++ + + HS I+ +
Sbjct: 185 FWLNLKNCNSPETVLEM-------LQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRR 236
Query: 97 IAQGSKYEPIL--LDNAYKIHMKLTIKAVTKQDFGAYKC---VSKNSLGDTDGSIKLYGK 151
+ + YE L L N A + C ++ TD L
Sbjct: 237 LLKSKPYENCLLVLLNVQN---AKAWNAF---NLS---CKILLTTRFKQVTD---FLSAA 284
Query: 152 KKKKKKKEKEKKVKKKKE 169
+ E
Sbjct: 285 TTTHISLDHHSMTLTPDE 302
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 28.4 bits (63), Expect = 0.55
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 160 KEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K+ K + K K+KKKK K K KEK
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 27.7 bits (61), Expect = 1.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKK 186
KK K K GK+KKKK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 26.9 bits (59), Expect = 1.9
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 155 KKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
KK K K K G K+KKKK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 26.9 bits (59), Expect = 2.1
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
KK K K K + KKKK K K+K+K V
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNSV 41
Score = 25.4 bits (55), Expect = 6.7
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKK 183
KK K + ++ KKK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 140
Score = 28.8 bits (65), Expect = 0.55
Identities = 4/27 (14%), Positives = 12/27 (44%)
Query: 165 KKKKEEGKKKKKKKKKKKKKKKKKVKE 191
K + G ++ + +K +K+ +
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 26.1 bits (58), Expect = 4.9
Identities = 3/27 (11%), Positives = 9/27 (33%)
Query: 166 KKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K + ++ + +K + K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 25.7 bits (57), Expect = 6.0
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 160 KEKKVKKKKEEGKKKKKKKKKKKKKKK 186
K + G+ +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 25.7 bits (57), Expect = 6.9
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 162 KKVKKKKEEGKKKKKKKKKKKKKKKKK 188
K + K + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 29.9 bits (67), Expect = 0.56
Identities = 9/49 (18%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 151 KKKKKKKKEKEKKV-----KKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
+++ +++ +EKK+ ++ EE K K + ++KE++
Sbjct: 274 QQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQK 322
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 28.4 bits (64), Expect = 0.60
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 42/122 (34%)
Query: 48 GEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY--W---------------- 89
G+ + Q P + + EG L C+ + ++ W
Sbjct: 1 GDQVEQSPSALSLH-------EGTDSALRCN---FTTTMRSVQWFRQNSRGSLISLFYLA 50
Query: 90 --TKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSIK 147
TKENG + + D+ + L I+ +D G Y C + + GS +
Sbjct: 51 SGTKENGRLKSA--------FDSERARYSTLHIRDAQLEDSGTYFCAA----EASSGSWQ 98
Query: 148 LY 149
L
Sbjct: 99 LI 100
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 29.7 bits (67), Expect = 0.68
Identities = 3/38 (7%), Positives = 19/38 (50%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
++++K ++ + + +E + K +++++ +
Sbjct: 732 RERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 28.6 bits (63), Expect = 0.70
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKK 186
GK+ +K+ ++ + K + K KKK K K K K
Sbjct: 2 GKQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 27.1 bits (59), Expect = 2.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K+ + K K+ K + KK KKK K K K+K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 27.1 bits (59), Expect = 2.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
K+ +K+ K K KK KKK K K K KV
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDKV 39
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 29.2 bits (65), Expect = 0.73
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKK--KKKKKKKVKEKK 193
KK + K K+E K+ KK +++K + E+
Sbjct: 241 KKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERL 285
Score = 27.3 bits (60), Expect = 2.9
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
K KK+ K+ KK +++K ++
Sbjct: 254 AKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGA 294
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 29.2 bits (65), Expect = 0.74
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K G +E E+K K+K + ++K+ K + K +K +EK
Sbjct: 148 KEVGWNYADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEK 193
Score = 27.2 bits (60), Expect = 2.6
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
++ ++K+KEK K ++++ K + K +K ++K E
Sbjct: 159 RELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEI 200
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.77
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 136 KNSLGDTDGSIKLY 149
K +L S+KLY
Sbjct: 19 KQALKKLQASLKLY 32
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 28.8 bits (64), Expect = 0.88
Identities = 11/47 (23%), Positives = 14/47 (29%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
G K + + E K K E KK+ KK E
Sbjct: 143 TSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESD 189
Score = 26.5 bits (58), Expect = 5.2
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+ K+K E KK+ K + K++
Sbjct: 157 EAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQLAA 196
Score = 25.7 bits (56), Expect = 8.6
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K + K+K + KK+ KK + K
Sbjct: 155 KLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQLAA 196
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 28.7 bits (63), Expect = 0.90
Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 17/132 (12%)
Query: 61 QNQLVGAMEGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTI 120
+ ++ G + L C W K NG+ + Q L +
Sbjct: 5 NIEYKVSISGTSVELTC--PLDSDENLKWEK-NGQELPQKHDKH-------------LVL 48
Query: 121 KAVTK-QDFGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKK 179
+ ++ +D G Y C + S +T +K KK+ KK KK++ KK +
Sbjct: 49 QDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTN 108
Query: 180 KKKKKKKKKVKE 191
K K +
Sbjct: 109 KAKNLVQVDGSR 120
Score = 27.1 bits (59), Expect = 3.3
Identities = 11/74 (14%), Positives = 19/74 (25%), Gaps = 15/74 (20%)
Query: 69 EGDQMTLECHSEAYPKSINYWTKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDF 128
+ L C W K +G II+ + + + K
Sbjct: 121 GDGSVLLTCGLTDKTIK---WLK-DGSIISPLNATKN-----------TWNLGNNAKDPR 165
Query: 129 GAYKCVSKNSLGDT 142
G Y+C +
Sbjct: 166 GTYQCQGAKETSNP 179
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 28.5 bits (63), Expect = 0.93
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KK K+ +K K K+K K K +V K+
Sbjct: 115 AKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157
Score = 28.1 bits (62), Expect = 1.3
Identities = 12/48 (25%), Positives = 18/48 (37%)
Query: 146 IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ + K+ KK K+ K K K K+K K KV +
Sbjct: 105 REQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPR 152
Score = 25.8 bits (56), Expect = 7.6
Identities = 10/49 (20%), Positives = 21/49 (42%)
Query: 145 SIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
S+ K+ +K + ++ + ++ K+ KK K+ KK K
Sbjct: 86 SLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPT 134
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 28.6 bits (63), Expect = 0.96
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+ K+KK + EKK +K +GK K KK + KK K+ V K
Sbjct: 113 ELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAK 154
Score = 27.1 bits (59), Expect = 3.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K+KK EK++ +K + + K KK + KK K+ K K
Sbjct: 114 LKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGK 157
Score = 26.7 bits (58), Expect = 4.3
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 146 IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ +KK ++K K + ++ K KK + KK K+ KK
Sbjct: 111 VRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGKK 158
Score = 25.9 bits (56), Expect = 8.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 145 SIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ KK + +K +E K KK + KK+ +K + K K K E K
Sbjct: 97 NLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETK 145
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 28.9 bits (64), Expect = 0.99
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 115 HMKLTIKAVTKQDFGAYKCV----SKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEE 170
H+ +K + Q A++ SK S++ K + ++ ++VK K+
Sbjct: 208 HIDAYMKHLKGQSNEAFQKQFSKWSKTLEAAKVDSVEKLFTKVHAEIRKNPERVKSTKKN 267
Query: 171 GKKKKKKKKKKKKK-----KKKKVKEKK 193
K K+ KK K +K +VK K
Sbjct: 268 DKPKRDHKKFYPTKLTAAQRKDRVKTKF 295
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 28.4 bits (63), Expect = 1.1
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 118 LTIKAVTKQDFGAYKCVSKNSLGDTDGS 145
LT+ +K++ G Y C ++ S
Sbjct: 92 LTLNKFSKENEGYYFCSVISNSVMYFSS 119
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 28.7 bits (65), Expect = 1.1
Identities = 8/36 (22%), Positives = 21/36 (58%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
K+ K K++ + + +K++ +KK+ +K+ + K
Sbjct: 65 KRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKN 100
Score = 28.4 bits (64), Expect = 1.5
Identities = 11/34 (32%), Positives = 11/34 (32%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K K KK K K K KK K K
Sbjct: 442 IPYIKELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
Score = 28.0 bits (63), Expect = 2.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K+ K KE K + +KE+ +KK+ +K+ + K ++ K
Sbjct: 65 KRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104
Score = 26.4 bits (59), Expect = 6.7
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKK 181
K+ K KK K K + KK K K
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
Score = 26.4 bits (59), Expect = 7.4
Identities = 10/27 (37%), Positives = 10/27 (37%)
Query: 167 KKEEGKKKKKKKKKKKKKKKKKVKEKK 193
KE K KK K K K KK
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKK 471
Score = 26.4 bits (59), Expect = 7.5
Identities = 9/27 (33%), Positives = 9/27 (33%)
Query: 165 KKKKEEGKKKKKKKKKKKKKKKKKVKE 191
K K K K K KK K K
Sbjct: 450 KNTTSVKKAKGKNPKNTTSVKKAKGKN 476
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 28.3 bits (64), Expect = 1.1
Identities = 4/28 (14%), Positives = 14/28 (50%)
Query: 166 KKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K++ + + + + +K+ + +KE
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELS 190
Score = 26.4 bits (59), Expect = 5.2
Identities = 3/29 (10%), Positives = 13/29 (44%)
Query: 156 KKKEKEKKVKKKKEEGKKKKKKKKKKKKK 184
K++ + + + +K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 28.2 bits (63), Expect = 1.1
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
+L K+ ++K ++ + K+++ K +K K
Sbjct: 90 RLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKA 130
Score = 27.8 bits (62), Expect = 1.3
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
+ +KK + + + KE K +K K + K
Sbjct: 94 MIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRGK 134
Score = 27.4 bits (61), Expect = 1.8
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+KK ++ + + K++ K +K K + K + +E
Sbjct: 100 TEKKARRPTRPTRASKERRLASKAQKSSVKAMRGKVRSGRE 140
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 29.0 bits (64), Expect = 1.2
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KK++ + + +K K + K K K KK + KKK ++
Sbjct: 478 DAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQR 519
Score = 28.6 bits (63), Expect = 1.4
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
+ K KKE+ ++ + K K K K KK + K+K
Sbjct: 474 QTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAV 517
Score = 28.2 bits (62), Expect = 1.8
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
K+ KK++ ++ K K + K K KK + KKK + ++
Sbjct: 476 KIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQ 523
Score = 27.4 bits (60), Expect = 3.1
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
K K K + KK E KKK ++ +++ K + +
Sbjct: 492 KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDRE 535
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A
{Pyrococcus horikoshii} PDB: 3gqx_B
Length = 169
Score = 28.0 bits (62), Expect = 1.4
Identities = 10/39 (25%), Positives = 25/39 (64%)
Query: 149 YGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
++ KK+ + + K++K+K K++K+++K +K K+
Sbjct: 131 IAEELKKELEARIKEIKEKYPRPPKRRKEERKGRKPWKE 169
Score = 27.2 bits (60), Expect = 2.9
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
KKE E ++K+ KE+ + K++K+++K +K
Sbjct: 136 KKELEARIKEIKEKYPRPPKRRKEERKGRKPW 167
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD,
protein binding; HET: MSE; 1.85A {Mus musculus}
Length = 253
Score = 28.3 bits (62), Expect = 1.4
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 146 IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
++ + K + K+ K+ KK ++E KKK K +KK KK + +
Sbjct: 115 MEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGR 162
Score = 27.9 bits (61), Expect = 1.9
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K K+ K+ +++KKK + K +KK KK + + ++ +
Sbjct: 127 KDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQ 168
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 28.1 bits (62), Expect = 1.5
Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 39/115 (33%)
Query: 47 NGEIIAQVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY--W--------------- 89
G+ + Q P + + EG L C+ + ++ W
Sbjct: 2 RGDQVEQSPSALSLH-------EGTGSALRCN---FTTTMRAVQWFRKNSRGSLINLFYL 51
Query: 90 ---TKENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGD 141
TKENG + + E + L I+ +D G Y C ++ S +
Sbjct: 52 ASGTKENGRLKSAFDSKER---------YSTLHIRDAQLEDSGTYFCAAEASNTN 97
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 27.5 bits (61), Expect = 1.5
Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 18/87 (20%)
Query: 65 VGAMEGDQMTLEC------HSEAYPKSINYWTKE----NGEIIAQGSKYEP--------I 106
V + G + + C W + +I G
Sbjct: 10 VQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAE 69
Query: 107 LLDNAYKIHMKLTIKAVTKQDFGAYKC 133
L+ N L +K + +D G Y
Sbjct: 70 LMGNMDHKVCNLLLKDLKPEDSGTYNF 96
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 28.5 bits (64), Expect = 1.5
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 13/100 (13%)
Query: 92 ENGEIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFGAYK------CVSKNSLGDTDGS 145
+ G I+ QG+ E + Y KL V Q G C SK+ + + D S
Sbjct: 598 DGGVIVEQGNHDELMREKGIYF---KL----VMTQTAGNEIELGNEACKSKDEIDNLDMS 650
Query: 146 IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKK 185
K G +++ ++ ++ K K+ +
Sbjct: 651 SKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPP 690
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large
ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila}
PDB: 4a19_E 4a1b_E 4a1d_E
Length = 191
Score = 28.1 bits (62), Expect = 1.5
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 141 DTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
+T Y ++K +K K + EE KKK+ ++K +K+ ++ V
Sbjct: 108 NTAKFEDDYFGREKARKNHKNLFKAELTEEQKKKETERKNARKQDQQAV 156
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 28.3 bits (64), Expect = 1.6
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 156 KKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+E EK +K ++ KK ++ K+ + V +
Sbjct: 411 AAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVD 446
>3q01_A Cellular tumor antigen P53; beta sandwich, multidomain,
oligomerization, TP53, TUMO suppressor, dimer, DNA
binding, antitumor protein; 2.10A {Homo sapiens} PDB:
3q05_A* 3ts8_A 3q06_A* 1a1u_A
Length = 233
Score = 28.1 bits (62), Expect = 1.6
Identities = 3/35 (8%), Positives = 19/35 (54%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
++ +E+ ++K + + + +++ ++ ++ E
Sbjct: 189 RRTEEENLRKTMDGEYFTLQIRGRERFEQFRERNE 223
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Length = 108
Score = 27.3 bits (60), Expect = 1.6
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKK 186
K++ K K GKK KKK KK K +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 26.5 bits (58), Expect = 3.3
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 160 KEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
++++ K + KK KKK KK +K++
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 25.7 bits (56), Expect = 4.9
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 156 KKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
K++ K K KK KKK KK K +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDRA 36
Score = 25.4 bits (55), Expect = 6.5
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
K++ K + + KKK KK K + + V
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDRAQHAV 40
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 27.4 bits (60), Expect = 1.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKK 184
+ K +K KK + +KK KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 27.1 bits (59), Expect = 2.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 159 EKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
E K K+ KK K +KK KK+KK +++ +
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKESY 38
Score = 26.7 bits (58), Expect = 3.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 156 KKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
+ + KK ++ K +KK KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 26.7 bits (58), Expect = 3.3
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+ + KK K K +KK KK+KK KE
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
Score = 25.9 bits (56), Expect = 5.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKK 180
K KK +K V K +++G KK+KK +K
Sbjct: 6 KSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 25.9 bits (56), Expect = 5.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKK 185
+ K KK KK +KK KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 28.4 bits (63), Expect = 1.7
Identities = 4/34 (11%), Positives = 12/34 (35%)
Query: 156 KKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
++ +E + + K K+ +K +
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNVI 37
Score = 26.8 bits (59), Expect = 4.4
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKK 186
++ +E + + + GK K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 26.5 bits (58), Expect = 6.0
Identities = 2/33 (6%), Positives = 12/33 (36%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKK 185
++ ++ + + + + K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 26.1 bits (57), Expect = 8.0
Identities = 3/33 (9%), Positives = 10/33 (30%)
Query: 155 KKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
++ ++ + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 26.1 bits (57), Expect = 9.5
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 166 KKKEEGKKKKKKKKKKKKKKKKKVK 190
+ ++ + K K+ +K
Sbjct: 11 QNRDISSRSNGKNPFKRSTGRKVSN 35
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Length = 135
Score = 27.6 bits (61), Expect = 1.7
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKK 184
+K +++ K+KK + KK G K+ KK ++
Sbjct: 99 KVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRN 133
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 28.3 bits (64), Expect = 1.8
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K + +E EK + E + +++ + KK K+K+ +E
Sbjct: 410 KDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQEN 451
Score = 26.8 bits (60), Expect = 5.3
Identities = 9/44 (20%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
+K + +KEK+ V+ ++ E K + +++ +++ + +K W
Sbjct: 401 QKLDEVRKEKDAAVQSQEFE-KAASLRDTEQRLREQVEDTKKSW 443
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 28.0 bits (62), Expect = 1.8
Identities = 16/94 (17%), Positives = 23/94 (24%), Gaps = 34/94 (36%)
Query: 69 EGDQMTLECHSEAYPKSINY--W--------------------TKENGEIIAQGSKYEPI 106
EG+ +T+ C+ + W K+ + Q
Sbjct: 15 EGENLTVYCN---SSSVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARK- 70
Query: 107 LLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLG 140
L I A D G Y C S G
Sbjct: 71 --------DSSLHITAAQPGDTGLYLCAGAGSQG 96
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR
SRT; 1.60A {Pseudomonas syringae PV}
Length = 219
Score = 27.8 bits (62), Expect = 2.0
Identities = 11/64 (17%), Positives = 18/64 (28%)
Query: 128 FGAYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
G + L I ++ + E E K ++ +K K
Sbjct: 51 DGLKQAYQGKPLALKQERIDQILREHDAAIAQAETAGTDAPTEAALKAERTFMAGEKAKP 110
Query: 188 KVKE 191
VKE
Sbjct: 111 GVKE 114
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 28.0 bits (62), Expect = 2.2
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 145 SIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKK 184
S L + K+E+ ++ K E + K K KK
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 28.0 bits (63), Expect = 2.3
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 156 KKKEKEKKVKK--KKEEGKKKKKKKKKKKKKKKKKVKE 191
+++E + VK + EEGK + K K+ K+ + +K+
Sbjct: 415 RREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKD 452
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_X 2go5_4 2j37_4
Length = 152
Score = 27.1 bits (60), Expect = 2.6
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
K +K K ++ K K K K+K KK+
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKKI 36
Score = 25.6 bits (56), Expect = 7.4
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 165 KKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K ++ K ++ K K K ++K
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRK 32
Score = 25.6 bits (56), Expect = 8.3
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKK 182
K KK K ++ K + K K+K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 27.8 bits (61), Expect = 2.6
Identities = 9/62 (14%), Positives = 21/62 (33%)
Query: 132 KCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+C+ K + KK+ + K + + + +K+ + KK K +
Sbjct: 290 QCLEKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTS 349
Query: 192 KK 193
Sbjct: 350 NV 351
Score = 27.5 bits (60), Expect = 3.0
Identities = 7/44 (15%), Positives = 21/44 (47%)
Query: 150 GKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
GK+ +++ ++ K+ + + KK K + +++ +K
Sbjct: 317 GKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQLVAEK 360
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning,
protein-DNA complex, heilx-turn- helix motif,
transcription factor; HET: BRU; 2.20A {Escherichia coli}
SCOP: a.4.14.1
Length = 178
Score = 27.1 bits (60), Expect = 3.0
Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 134 VSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKK-----KKKKKKKKKKKKK 188
+ ++ T G++KL + +K ++ + ++ + + + K
Sbjct: 115 LDDDTQEITRGTVKLLREFLDEKGRDPNTVDAFNGQTDAERDAEAGDGQDGEDGDQDGKD 174
Query: 189 VKEK 192
KEK
Sbjct: 175 AKEK 178
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 26.6 bits (58), Expect = 3.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKK 183
K + KK K ++ K KKKK+K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 26.2 bits (57), Expect = 3.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 161 EKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
K K ++ K +K K KKKK+K KE
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 25.8 bits (56), Expect = 5.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 160 KEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
+ K K+ GK +K K KKKK+K+
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKR 31
Score = 25.4 bits (55), Expect = 7.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKK 182
K K +K K +K K KKKK+K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 25.4 bits (55), Expect = 8.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 158 KEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
+ K KK + +K K KKKK+K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 25.4 bits (55), Expect = 9.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKKK 186
K K KK + K K KKKK+K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 27.1 bits (59), Expect = 3.6
Identities = 4/45 (8%), Positives = 20/45 (44%)
Query: 149 YGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
G +K + + + ++ +KE ++ ++ + + + + +
Sbjct: 306 RGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGG 350
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 27.4 bits (60), Expect = 3.7
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ ++ KEKE ++K+ ++E +K + KK + +KKK+++KK
Sbjct: 344 QMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKK 386
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 26.6 bits (58), Expect = 3.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
K K K+K+K +K +K E+ K + K K++ K +K
Sbjct: 108 KLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQK 149
Score = 26.2 bits (57), Expect = 4.8
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
KL K+KKK ++ +K +K K G + K K++ K +KV
Sbjct: 108 KLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKVAAT 153
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 26.8 bits (60), Expect = 4.2
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K ++K K K+V+++ E+ +++ +KK + ++KEK
Sbjct: 9 GKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKD 51
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 27.3 bits (60), Expect = 4.2
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 145 SIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKK 184
S L + K+E+ ++ K E + K K KK
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_G
Length = 219
Score = 26.9 bits (59), Expect = 4.3
Identities = 7/47 (14%), Positives = 13/47 (27%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
Y ++ K K K E+ + K K + +
Sbjct: 18 HTYHRRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTR 64
>2w8d_A Processed glycerol phosphate lipoteichoic acid SY; transferase,
phosphatase, cell membrane, transmembrane, LTA,
membrane, secreted, cell WALL; HET: TPO PG4; 2.35A
{Bacillus subtilis}
Length = 436
Score = 27.1 bits (60), Expect = 4.4
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKK 188
+ + + KKV + K + + K + K
Sbjct: 402 RFYEPKGFKKVNPSDYDYTKHDEDSSETSKDNEDK 436
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 27.1 bits (59), Expect = 4.5
Identities = 12/39 (30%), Positives = 26/39 (66%)
Query: 155 KKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K KEK +K+K + E +++ ++ KK + + K+++EK+
Sbjct: 344 MKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKR 382
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 26.6 bits (58), Expect = 4.7
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKK 187
+ KK K ++K KK + K + + K ++ K K
Sbjct: 118 RIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGPK 154
Score = 26.2 bits (57), Expect = 6.0
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
+ ++ KE+ KK K +K+ K + K +K + K + K
Sbjct: 109 EAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAK 151
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 26.4 bits (58), Expect = 4.8
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 156 KKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+K E++++ + K KK K+ +KK+ +K
Sbjct: 153 EKLEEKRRARAKTYHDKKVKQADARKKELAAPALKA 188
Score = 26.4 bits (58), Expect = 6.0
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
G K+ ++ E+K + + + KK K+ +KK+ K
Sbjct: 142 ASVGWGKQTLIEKLEEKRRARAKTYHDKKVKQADARKKELAAPALKA 188
Score = 26.0 bits (57), Expect = 6.7
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 153 KKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+K++ + K KK K+ +KK+ K K K+ +
Sbjct: 157 EKRRARAKTYHDKKVKQADARKKELAAPALKAIKDKLAQ 195
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen
fixation, nitrogen metabolism, molybdoenzymes, electron
transfer; HET: HCA CFM CLF; 1.60A {Klebsiella
pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Length = 519
Score = 26.7 bits (59), Expect = 5.2
Identities = 3/38 (7%), Positives = 18/38 (47%)
Query: 147 KLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKK 184
+L+ K++ ++ ++V++ + + +++
Sbjct: 21 ELFRNKRQLEEAHDAQRVQEVFAWTTTAEYEALNFRRE 58
>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 100
Score = 25.6 bits (57), Expect = 5.2
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
+K ++EKK ++ E K ++ K++ +K KW
Sbjct: 3 RKSLIQREKK--RRNLEQKYHLIRRSSKQEIRKVTSLSDKW 41
>3iz5_C 60S ribosomal protein L3 (L3P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_C
Length = 389
Score = 26.7 bits (58), Expect = 5.3
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 141 DTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
D + Y K KKK K K + KK+ + + +K KK +
Sbjct: 111 SEDVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIV 160
Score = 25.9 bits (56), Expect = 9.7
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 143 DGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+ + + K K KK+ K K + KK+ + + +K KK +
Sbjct: 112 EDVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIVR 161
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 27.0 bits (60), Expect = 5.5
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 152 KKKKKKKEKEKKVKKKK----EEGKKKKKKKKKKKKKKKKKVKEKK 193
+ KK E K+ + + E+ K+ K +K + E +
Sbjct: 918 RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE 963
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 26.6 bits (59), Expect = 5.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 162 KKVKKKKEEGKKKKKKKKKKKKKKKKK 188
K ++E KK+KK+ + KKK +
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAAR 498
Score = 26.2 bits (58), Expect = 9.3
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 152 KKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
K ++E KK KK+ E KKK + + + + ++
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNME 510
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 257
Score = 26.3 bits (58), Expect = 6.2
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 144 GSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKK 180
S+ + +KK K K + + +E KK+ +
Sbjct: 215 CSLIVLPGRKKWVKPSVAKNLARAEEYFAKKRGGETA 251
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 25.9 bits (57), Expect = 6.3
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 165 KKKKEEGKKKKKKKKKKKKKKKKKV 189
KK +K+ + V
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENV 27
Score = 25.9 bits (57), Expect = 6.5
Identities = 3/25 (12%), Positives = 6/25 (24%)
Query: 166 KKKEEGKKKKKKKKKKKKKKKKKVK 190
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENV 27
Score = 25.6 bits (56), Expect = 8.9
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 172 KKKKKKKKKKKKKKKKKVKEKK 193
KK +K+ V +
Sbjct: 4 KKTAPVQKEVISYGPPNVGANE 25
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 26.6 bits (59), Expect = 6.4
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 154 KKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVK 190
K + + ++ ++K + +K +KKKKKK K
Sbjct: 351 KSEMEVQDAELKALLQSSASRKTQKKKKKKASKTAEN 387
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 26.7 bits (58), Expect = 6.6
Identities = 6/42 (14%), Positives = 16/42 (38%)
Query: 151 KKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEK 192
+ K + K+K + KKK + ++ + ++
Sbjct: 520 AEVTTKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQDNHEDG 561
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 25.8 bits (57), Expect = 7.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 118 LTIKAVTKQDFGAYKCVSKNS 138
LTI+ + +D G Y C K
Sbjct: 79 LTIQNIQYEDNGIYFCKQKCD 99
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 26.1 bits (57), Expect = 7.2
Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 26/109 (23%)
Query: 53 QVPPMIWIQNQLVGAMEGDQMTLECHSEAYPKSINY---WTKEN-GE----IIAQGSKYE 104
Q+P + + EG+ + L C + S Y W +++ G+ ++ S
Sbjct: 5 QIPAALSVP-------EGENLVLNCS---FTDSAIYNLQWFRQDPGKGLTSLLLIQSSQR 54
Query: 105 P-------ILLDNAYKIHMKLTIKAVTKQDFGAYKCVSKNSLGDTDGSI 146
LD + L I A D Y C + + G +
Sbjct: 55 EQTSGRLNASLDKSSG-RSTLYIAASQPGDSATYLCAVRPTSGGSYIPT 102
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell
division, DNA replication, nuclear protein; HET: DNA;
NMR {Homo sapiens} SCOP: g.39.1.12
Length = 117
Score = 25.4 bits (55), Expect = 7.3
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 157 KKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKV 189
+ +++++ + + K KKK + K+
Sbjct: 83 EDNEKEQITQHIADLSSKAAGTPKKKAVVQAKL 115
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction,
sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP:
b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A*
1e06_A* 1hqp_A* 1a3y_A
Length = 157
Score = 25.7 bits (56), Expect = 8.7
Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
Query: 73 MTLECHSEAYPKSINYWTKENG---EIIAQGSKYEPILLDNAYKIHMKLTIKAVTKQDFG 129
++E + +N+++KENG E G+K E D Y + K + ++
Sbjct: 40 RSIEFDDKESKVYLNFFSKENGICEEFSLIGTKQEGNTYDVNYAGNNKFVVSYASETAL- 98
Query: 130 AYKCVSKNSLGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEG 171
++ + GD L GK + ++ EK + +E G
Sbjct: 99 IISNINVDEEGDKTIMTGLLGKGTDIEDQDLEKFKEVTRENG 140
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 26.2 bits (57), Expect = 8.8
Identities = 8/49 (16%), Positives = 18/49 (36%)
Query: 146 IKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKEKKW 194
+K Y + ++ ++K+ + KK+K + KK
Sbjct: 259 VKKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKS 307
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins
binding, carbohydrate binding, calcium binding,
endoplasmic reticulu; 2.57A {Mus musculus}
Length = 332
Score = 25.8 bits (56), Expect = 9.4
Identities = 8/44 (18%), Positives = 21/44 (47%)
Query: 139 LGDTDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKK 182
+ + + + +G + K EK++K K++E ++ K +
Sbjct: 288 ITNDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLKLEHHHHH 331
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA
binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Length = 1308
Score = 26.0 bits (56), Expect = 9.7
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 165 KKKKEEGKKKKKKKKKKKKKKKKKVKEKK 193
K + K +K+K K ++E K
Sbjct: 1219 NKSSDAPKCSEKEKAAVSTTMAKVLRETK 1247
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone,
peptidyl-prolyl isomerase, heat shock protein, FK
family; HET: MSE; 1.97A {Escherichia coli} SCOP:
d.26.1.1 PDB: 1q6i_A* 1q6u_A
Length = 224
Score = 25.5 bits (56), Expect = 10.0
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 142 TDGSIKLYGKKKKKKKKEKEKKVKKKKEEGKKKKKKKKKKKKKKKKKVKE 191
+D I+ + + + K + +K + K K+ ++K K+K VK
Sbjct: 69 SDQEIEQTLQAFEARVKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVKT 118
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.127 0.370
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,852,628
Number of extensions: 170640
Number of successful extensions: 6108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4032
Number of HSP's successfully gapped: 1467
Length of query: 194
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 106
Effective length of database: 4,244,745
Effective search space: 449942970
Effective search space used: 449942970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.4 bits)