BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16427
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EW2|A Chain A, Crystal Structure Of A Human Phosphatase
Length = 513
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 8/83 (9%)
Query: 20 DKEFWYKDAQE--GIRRRLALFGESHLPEDRAKNIILMVGDGMGLSTLTASRILKGQRMG 77
+ +FW ++A E G ++L + AKN+I+ +GDGMG+ST+TA+RILKGQ+
Sbjct: 8 NPDFWNREAAEALGAAKKL------QPAQTAAKNLIIFLGDGMGVSTVTAARILKGQKKD 61
Query: 78 IHGEEYHLAWDKFPAVALAKQFS 100
G E LA D+FP VAL+K ++
Sbjct: 62 KLGPEIPLAMDRFPYVALSKTYN 84
>pdb|1ZED|A Chain A, Alkaline Phosphatase From Human Placenta In Complex With
P- Nitrophenyl-Phosphonate
Length = 484
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 8/83 (9%)
Query: 20 DKEFWYKDAQE--GIRRRLALFGESHLPEDRAKNIILMVGDGMGLSTLTASRILKGQRMG 77
+ +FW ++A E G ++L + AKN+I+ +GDGMG+ST+TA+RILKGQ+
Sbjct: 8 NPDFWNREAAEALGAAKKL------QPAQTAAKNLIIFLGDGMGVSTVTAARILKGQKKD 61
Query: 78 IHGEEYHLAWDKFPAVALAKQFS 100
G E LA D+FP VAL+K ++
Sbjct: 62 KLGPEIPLAMDRFPYVALSKTYN 84
>pdb|3MK0|A Chain A, Refinement Of Placental Alkaline Phosphatase Complexed
With Nitrophenyl
pdb|3MK1|A Chain A, Refinement Of Placental Alkaline Phosphatase Complexed
With Nitrophenyl
pdb|3MK2|A Chain A, Placental Alkaline Phosphatase Complexed With Phe
pdb|2GLQ|A Chain A, X-Ray Structure Of Human Alkaline Phosphatase In Complex
With Strontium
pdb|1ZEF|A Chain A, Structure Of Alkaline Phosphatase From Human Placenta In
Complex With Its Uncompetitive Inhibitor L-Phe
pdb|1ZEB|A Chain A, X-ray Structure Of Alkaline Phosphatase From Human
Placenta In Complex With 5'-amp
Length = 484
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 8/83 (9%)
Query: 20 DKEFWYKDAQE--GIRRRLALFGESHLPEDRAKNIILMVGDGMGLSTLTASRILKGQRMG 77
+ +FW ++A E G ++L + AKN+I+ +GDGMG+ST+TA+RILKGQ+
Sbjct: 8 NPDFWNREAAEALGAAKKL------QPAQTAAKNLIIFLGDGMGVSTVTAARILKGQKKD 61
Query: 78 IHGEEYHLAWDKFPAVALAKQFS 100
G E LA D+FP VAL+K ++
Sbjct: 62 KLGPEIPLAMDRFPYVALSKTYN 84
>pdb|1SHN|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase With
Phosphate Bound
pdb|1SHN|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase With
Phosphate Bound
pdb|1SHQ|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase With
Magnesium In M3
pdb|1SHQ|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase With
Magnesium In M3
Length = 478
Score = 67.0 bits (162), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 5/82 (6%)
Query: 20 DKEFWYKDAQEGIRRRLALFGESHLPEDRAKNIILMVGDGMGLSTLTASRILKGQRMGIH 79
DK +W KDAQ+ + ++L + L E +AKN+I +GDGM LST+TA+RI KG G
Sbjct: 3 DKAYWNKDAQDALDKQLGI----KLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTG-K 57
Query: 80 GEEYHLAWDKFPAVALAKQFSS 101
E ++W++F AL+K +++
Sbjct: 58 FEREKISWEEFDFAALSKTYNT 79
>pdb|1K7H|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase
pdb|1K7H|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase
Length = 476
Score = 67.0 bits (162), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 5/82 (6%)
Query: 20 DKEFWYKDAQEGIRRRLALFGESHLPEDRAKNIILMVGDGMGLSTLTASRILKGQRMGIH 79
DK +W KDAQ+ + ++L + L E +AKN+I +GDGM LST+TA+RI KG G
Sbjct: 3 DKAYWNKDAQDALDKQLGI----KLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTG-K 57
Query: 80 GEEYHLAWDKFPAVALAKQFSS 101
E ++W++F AL+K +++
Sbjct: 58 FEREKISWEEFDFAALSKTYNT 79
>pdb|1ALJ|A Chain A, Alkaline Phosphatase Mutant (H412n)
pdb|1ALJ|B Chain B, Alkaline Phosphatase Mutant (H412n)
pdb|1ALI|A Chain A, Alkaline Phosphatase Mutant (H412n)
pdb|1ALI|B Chain B, Alkaline Phosphatase Mutant (H412n)
Length = 449
Score = 36.2 bits (82), Expect = 0.006, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 37 LSDKPAKNIILLIGDGMGDSEITAAR 62
>pdb|1KH4|A Chain A, E. Coli Alkaline Phosphatase Mutant (D330n) In Complex
With Phosphate
pdb|1KH4|B Chain B, E. Coli Alkaline Phosphatase Mutant (D330n) In Complex
With Phosphate
pdb|1KH5|A Chain A, E. Coli Alkaline Phosphatase Mutant (D330n) Mimic Of The
Transition States With Aluminium Fluoride
pdb|1KH5|B Chain B, E. Coli Alkaline Phosphatase Mutant (D330n) Mimic Of The
Transition States With Aluminium Fluoride
pdb|1KH9|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153gd330n) Complex
With Phosphate
pdb|1KH9|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153gd330n) Complex
With Phosphate
Length = 449
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 37 LSDKPAKNIILLIGDGMGDSEITAAR 62
>pdb|1ALK|A Chain A, Reaction Mechanism Of Alkaline Phosphatase Based On
Crystal Structures. Two Metal Ion Catalysis
pdb|1ALK|B Chain B, Reaction Mechanism Of Alkaline Phosphatase Based On
Crystal Structures. Two Metal Ion Catalysis
Length = 449
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 37 LSDKPAKNIILLIGDGMGDSEITAAR 62
>pdb|1ELX|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102a)
pdb|1ELX|B Chain B, E. Coli Alkaline Phosphatase Mutant (S102a)
Length = 449
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 37 LSDKPAKNIILLIGDGMGDSEITAAR 62
>pdb|1KH7|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153gd330n)
pdb|1KH7|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153gd330n)
Length = 449
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 37 LSDKPAKNIILLIGDGMGDSEITAAR 62
>pdb|1ELY|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102c)
pdb|1ELY|B Chain B, E. Coli Alkaline Phosphatase Mutant (S102c)
Length = 449
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 37 LSDKPAKNIILLIGDGMGDSEITAAR 62
>pdb|1HQA|A Chain A, Alkaline Phosphatase (H412q)
pdb|1HQA|B Chain B, Alkaline Phosphatase (H412q)
Length = 449
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 37 LSDKPAKNIILLIGDGMGDSEITAAR 62
>pdb|1HJK|A Chain A, Alkaline Phosphatase Mutant H331q
pdb|1HJK|B Chain B, Alkaline Phosphatase Mutant H331q
Length = 449
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 37 LSDKPAKNIILLIGDGMGDSEITAAR 62
>pdb|2G9Y|A Chain A, Structure Of S102t E. Coli Alkaline Phosphatase In
Presence Of Phosphate At 2.00 A Resolution
pdb|2G9Y|B Chain B, Structure Of S102t E. Coli Alkaline Phosphatase In
Presence Of Phosphate At 2.00 A Resolution
Length = 449
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 37 LSDKPAKNIILLIGDGMGDSEITAAR 62
>pdb|3DPC|A Chain A, Structure Of E.Coli Alkaline Phosphatase Mutant In
Complex With A Phosphorylated Peptide
pdb|3DPC|B Chain B, Structure Of E.Coli Alkaline Phosphatase Mutant In
Complex With A Phosphorylated Peptide
Length = 455
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 37 LSDKPAKNIILLIGDGMGDSEITAAR 62
>pdb|3BDG|B Chain B, Crystal Structure Of Wild-TypeT155V MIXED DIMER OF E.
COLI ALKALINE Phosphatase
Length = 458
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 38 LSDKPAKNIILLIGDGMGDSEITAAR 63
>pdb|3BDH|A Chain A, Crystal Structure Of Zinc-Deficient Wild-Type E. Coli
Alkaline Phosphatase
pdb|3BDH|B Chain B, Crystal Structure Of Zinc-Deficient Wild-Type E. Coli
Alkaline Phosphatase
Length = 458
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 38 LSDKPAKNIILLIGDGMGDSEITAAR 63
>pdb|1ED8|A Chain A, Structure Of E. Coli Alkaline Phosphatase Inhibited By
The Inorganic Phosphate At 1.75a Resolution
pdb|1ED8|B Chain B, Structure Of E. Coli Alkaline Phosphatase Inhibited By
The Inorganic Phosphate At 1.75a Resolution
pdb|1ED9|A Chain A, Structure Of E. Coli Alkaline Phosphatase Without The
Inorganic Phosphate At 1.75a Resolution
pdb|1ED9|B Chain B, Structure Of E. Coli Alkaline Phosphatase Without The
Inorganic Phosphate At 1.75a Resolution
pdb|1EW8|A Chain A, Alkaline Phosphatase (e.c. 3.1.3.1) Complex With
Phosphonoacetic Acid
pdb|1EW8|B Chain B, Alkaline Phosphatase (e.c. 3.1.3.1) Complex With
Phosphonoacetic Acid
pdb|1EW9|A Chain A, Alkaline Phosphatase (E.C. 3.1.3.1) Complex With
Mercaptomethyl Phosphonate
pdb|1EW9|B Chain B, Alkaline Phosphatase (E.C. 3.1.3.1) Complex With
Mercaptomethyl Phosphonate
pdb|1Y6V|A Chain A, Structure Of E. Coli Alkaline Phosphatase In Presence Of
Cobalt At 1.60 A Resolution
pdb|1Y6V|B Chain B, Structure Of E. Coli Alkaline Phosphatase In Presence Of
Cobalt At 1.60 A Resolution
pdb|3TG0|A Chain A, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
pdb|3TG0|B Chain B, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
pdb|3TG0|C Chain C, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
pdb|3TG0|D Chain D, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
Length = 449
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 37 LSDKPAKNIILLIGDGMGDSEITAAR 62
>pdb|1B8J|A Chain A, Alkaline Phosphatase Complexed With Vanadate
pdb|1B8J|B Chain B, Alkaline Phosphatase Complexed With Vanadate
pdb|2GA3|A Chain A, Structure Of S102t E. Coli Alkaline
Phosphatase-Phosphate Intermediate At 2.20a Resolution
pdb|2GA3|B Chain B, Structure Of S102t E. Coli Alkaline
Phosphatase-Phosphate Intermediate At 2.20a Resolution
Length = 449
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 37 LSDKPAKNIILLIGDGMGDSEITAAR 62
>pdb|1ALH|A Chain A, Kinetics And Crystal Structure Of A Mutant E. Coli
Alkaline Phosphatase (Asp-369-->asn): A Mechanism
Involving One Zinc Per Active Site
pdb|1ALH|B Chain B, Kinetics And Crystal Structure Of A Mutant E. Coli
Alkaline Phosphatase (Asp-369-->asn): A Mechanism
Involving One Zinc Per Active Site
Length = 446
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 34 LSDKPAKNIILLIGDGMGDSEITAAR 59
>pdb|3BDF|A Chain A, Crystal Structure Of Metal-Free E. Coli Alkaline
Phosphatase (T155v)
pdb|3BDF|B Chain B, Crystal Structure Of Metal-Free E. Coli Alkaline
Phosphatase (T155v)
pdb|3BDG|A Chain A, Crystal Structure Of Wild-TypeT155V MIXED DIMER OF E.
COLI ALKALINE Phosphatase
Length = 458
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 38 LSDKPAKNIILLIGDGMGDSEITAAR 63
>pdb|3CMR|A Chain A, E. Coli Alkaline Phosphatase Mutant R166s In Complex
With Phosphate
pdb|3CMR|B Chain B, E. Coli Alkaline Phosphatase Mutant R166s In Complex
With Phosphate
Length = 449
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 37 LSDKPAKNIILLIGDGMGDSEITAAR 62
>pdb|1ELZ|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102g)
pdb|1ELZ|B Chain B, E. Coli Alkaline Phosphatase Mutant (S102g)
Length = 449
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 37 LSDKPAKNIILLIGDGMGDSEITAAR 62
>pdb|1AJD|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E.
Coli Alkaline Phosphatase: A Mutant With Weaker
Magnesium Binding And Increased Catalytic Activity
pdb|1AJD|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E.
Coli Alkaline Phosphatase: A Mutant With Weaker
Magnesium Binding And Increased Catalytic Activity
pdb|1AJC|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E.
Coli Alkaline Phosphatase: A Mutant With Weaker
Magnesium Binding And Increased Catalytic Activity
pdb|1AJC|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E.
Coli Alkaline Phosphatase: A Mutant With Weaker
Magnesium Binding And Increased Catalytic Activity
pdb|1AJB|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E.
Coli Alkaline Phosphatase: A Mutant With Weaker
Magnesium Binding And Increased Catalytic Activity
pdb|1AJB|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E.
Coli Alkaline Phosphatase: A Mutant With Weaker
Magnesium Binding And Increased Catalytic Activity
pdb|1AJA|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E.
Coli Alkaline Phosphatase: A Mutant With Weaker
Magnesium Binding And Increased Catalytic Activity
pdb|1AJA|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E.
Coli Alkaline Phosphatase: A Mutant With Weaker
Magnesium Binding And Increased Catalytic Activity
Length = 449
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 37 LSDKPAKNIILLIGDGMGDSEITAAR 62
>pdb|3DYC|A Chain A, Structure Of E322y Alkaline Phosphatase In Complex With
Inorganic Phosphate
pdb|3DYC|B Chain B, Structure Of E322y Alkaline Phosphatase In Complex With
Inorganic Phosphate
Length = 449
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 37 LSDKPAKNIILLIGDGMGDSEITAAR 62
>pdb|1KHJ|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Mimic
Of The Transition States With Aluminium Fluoride
pdb|1KHJ|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Mimic
Of The Transition States With Aluminium Fluoride
pdb|1KHK|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n)
pdb|1KHK|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n)
pdb|1KHL|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Complex
With Phosphate
pdb|1KHL|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Complex
With Phosphate
pdb|1KHN|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Zinc
Form
pdb|1KHN|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Zinc
Form
Length = 449
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 37 LSDKPAKNIILLIGDGMGDSEITAAR 62
>pdb|1Y7A|A Chain A, Structure Of D153hK328W E. COLI ALKALINE PHOSPHATASE IN
Presence Of Cobalt At 1.77 A Resolution
pdb|1Y7A|B Chain B, Structure Of D153hK328W E. COLI ALKALINE PHOSPHATASE IN
Presence Of Cobalt At 1.77 A Resolution
Length = 449
Score = 36.2 bits (82), Expect = 0.008, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 37 LSDKPAKNIILLIGDGMGDSEITAAR 62
>pdb|1ANJ|A Chain A, Alkaline Phosphatase (K328h)
pdb|1ANJ|B Chain B, Alkaline Phosphatase (K328h)
Length = 446
Score = 36.2 bits (82), Expect = 0.008, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 34 LSDKPAKNIILLIGDGMGDSEITAAR 59
>pdb|2ANH|A Chain A, Alkaline Phosphatase (D153h)
pdb|2ANH|B Chain B, Alkaline Phosphatase (D153h)
Length = 446
Score = 36.2 bits (82), Expect = 0.008, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 34 LSDKPAKNIILLIGDGMGDSEITAAR 59
>pdb|1ANI|A Chain A, Alkaline Phosphatase (D153h, K328h)
pdb|1ANI|B Chain B, Alkaline Phosphatase (D153h, K328h)
Length = 446
Score = 35.8 bits (81), Expect = 0.008, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++GDGMG S +TA+R
Sbjct: 34 LSDKPAKNIILLIGDGMGDSEITAAR 59
>pdb|1URB|A Chain A, Alkaline Phosphatase (N51mg)
pdb|1URB|B Chain B, Alkaline Phosphatase (N51mg)
pdb|1URA|A Chain A, Alkaline Phosphatase (D51zn)
pdb|1URA|B Chain B, Alkaline Phosphatase (D51zn)
Length = 446
Score = 34.3 bits (77), Expect = 0.027, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 44 LPEDRAKNIILMVGDGMGLSTLTASR 69
L + AKNIIL++G+GMG S +TA+R
Sbjct: 34 LSDKPAKNIILLIGNGMGDSEITAAR 59
>pdb|3E2D|A Chain A, The 1.4 A Crystal Structure Of The Large And Cold-Active
Vibrio Sp. Alkaline Phosphatase
pdb|3E2D|B Chain B, The 1.4 A Crystal Structure Of The Large And Cold-Active
Vibrio Sp. Alkaline Phosphatase
Length = 502
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 9/39 (23%)
Query: 50 KNIILMVGDGMG---------LSTLTASRILKGQRMGIH 79
KN+ILM+GDGMG + + I KG + I+
Sbjct: 4 KNVILMIGDGMGPQQVGLLETYANQAPNSIYKGNKTAIY 42
>pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz
Length = 243
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 51 NIILMVGDGMGLS-TLTASRILKGQRMGIH--GEEYHLAWDKFPAVALAKQFSSGGIILC 107
+++L +G+ L T+T I R+G++ G + LA D A +SGG ++
Sbjct: 140 DVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLATD-----ASINHGNSGGALVN 194
Query: 108 QLGQRMGIHGEEYHLAWDK 126
LG+ MGI+ L++DK
Sbjct: 195 SLGELMGIN----TLSFDK 209
>pdb|3LH1|A Chain A, Q191a Mutant Of The Degs-Deltapdz
Length = 241
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 51 NIILMVGDGMGLS-TLTASRILKGQRMGIH--GEEYHLAWDKFPAVALAKQFSSGGIILC 107
+++L +G+ L T+T I R+G++ G + LA D A +SGG ++
Sbjct: 138 DVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLATD-----ASINHGNSGGALVN 192
Query: 108 QLGQRMGIHGEEYHLAWDK 126
LG+ MGI+ L++DK
Sbjct: 193 SLGELMGIN----TLSFDK 207
>pdb|3H76|A Chain A, Crystal Structure Of Pqsd, A Key Enzyme In Pseudomonas
Aeruginosa Quinolone Signal Biosynthesis Pathway
pdb|3H76|B Chain B, Crystal Structure Of Pqsd, A Key Enzyme In Pseudomonas
Aeruginosa Quinolone Signal Biosynthesis Pathway
Length = 359
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 47 DRAKNIILMVGDGMGLSTLTASRILKGQ----RMGIHGEEYHLAWDKFPAVA 94
DR +N+ +++GDG G ++A L+ R+G G + L P A
Sbjct: 173 DRGRNLSILLGDGAGAVVVSAGESLEDGLLDLRLGADGNYFDLLMTAAPGSA 224
>pdb|3H78|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pqsd C112a
Mutant In Complex With Anthranilic Acid
pdb|3H78|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pqsd C112a
Mutant In Complex With Anthranilic Acid
Length = 359
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 47 DRAKNIILMVGDGMGLSTLTASRILKGQ----RMGIHGEEYHLAWDKFPAVA 94
DR +N+ +++GDG G ++A L+ R+G G + L P A
Sbjct: 173 DRGRNLSILLGDGAGAVVVSAGESLEDGLLDLRLGADGNYFDLLMTAAPGSA 224
>pdb|3H77|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pqsd In A
Covalent Complex With Anthranilate
pdb|3H77|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pqsd In A
Covalent Complex With Anthranilate
Length = 359
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 47 DRAKNIILMVGDGMGLSTLTASRILKGQ----RMGIHGEEYHLAWDKFPAVA 94
DR +N+ +++GDG G ++A L+ R+G G + L P A
Sbjct: 173 DRGRNLSILLGDGAGAVVVSAGESLEDGLLDLRLGADGNYFDLLMTAAPGSA 224
>pdb|1X1Q|A Chain A, Crystal Structure Of Tryptophan Synthase Beta Chain From
Thermus Thermophilus Hb8
pdb|1X1Q|B Chain B, Crystal Structure Of Tryptophan Synthase Beta Chain From
Thermus Thermophilus Hb8
Length = 418
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 42 SHLPEDRAKNIILMVGDGMGLSTLT-ASRILKGQRMGIHGEEYHLAWDKFPAVALAKQFS 100
++LPE R K +I + G GLST A+ I G+R +HG +L +D + A S
Sbjct: 267 AYLPEGRPK-LIGVEAAGEGLSTGRHAASIGAGKRGVLHGSYXYLLYDHDGQITPAHSVS 325
Query: 101 SG 102
+G
Sbjct: 326 AG 327
>pdb|1ACV|A Chain A, Dsba Mutant H32s
pdb|1ACV|B Chain B, Dsba Mutant H32s
Length = 189
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 77 GIHGEEYHLAWDKFPAVALAKQ 98
GI GEEY AW+ F +L Q
Sbjct: 116 GIKGEEYDAAWNSFVVKSLVAQ 137
>pdb|1AC1|A Chain A, Dsba Mutant H32l
pdb|1AC1|B Chain B, Dsba Mutant H32l
Length = 189
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 77 GIHGEEYHLAWDKFPAVALAKQ 98
GI GEEY AW+ F +L Q
Sbjct: 116 GIKGEEYDAAWNSFVVKSLVAQ 137
>pdb|1UN2|A Chain A, Crystal Structure Of Circularly Permuted Cpdsba_q100t99
Preserved Global Fold And Local Structural Adjustments
Length = 197
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 77 GIHGEEYHLAWDKFPAVALAKQ 98
GI GEEY AW+ F +L Q
Sbjct: 17 GIKGEEYDAAWNSFVVKSLVAQ 38
>pdb|1BQ7|A Chain A, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
pdb|1BQ7|B Chain B, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
pdb|1BQ7|C Chain C, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
pdb|1BQ7|D Chain D, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
pdb|1BQ7|E Chain E, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
pdb|1BQ7|F Chain F, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
Length = 189
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 77 GIHGEEYHLAWDKFPAVALAKQ 98
GI GEEY AW+ F +L Q
Sbjct: 116 GIKGEEYDAAWNSFVVKSLVAQ 137
>pdb|1FVJ|A Chain A, The 2.06 Angstrom Structure Of The H32y Mutant Of The
Disulfide Bond Formation Protein (Dsba)
pdb|1FVJ|B Chain B, The 2.06 Angstrom Structure Of The H32y Mutant Of The
Disulfide Bond Formation Protein (Dsba)
Length = 189
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 77 GIHGEEYHLAWDKFPAVALAKQ 98
GI GEEY AW+ F +L Q
Sbjct: 116 GIKGEEYDAAWNSFVVKSLVAQ 137
>pdb|2B6M|A Chain A, Structure Of The Dsba Mutant (P31a-C33a)
pdb|2B6M|B Chain B, Structure Of The Dsba Mutant (P31a-C33a)
Length = 189
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 77 GIHGEEYHLAWDKFPAVALAKQ 98
GI GEEY AW+ F +L Q
Sbjct: 116 GIKGEEYDAAWNSFVVKSLVAQ 137
>pdb|2B3S|A Chain A, Structure Of The Dsba Mutant (P31g-C33a)
pdb|2B3S|B Chain B, Structure Of The Dsba Mutant (P31g-C33a)
Length = 189
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 77 GIHGEEYHLAWDKFPAVALAKQ 98
GI GEEY AW+ F +L Q
Sbjct: 116 GIKGEEYDAAWNSFVVKSLVAQ 137
>pdb|1DSB|A Chain A, Crystal Structure Of The Dsba Protein Required For
Disulphide Bond Formation In Vivo
pdb|1DSB|B Chain B, Crystal Structure Of The Dsba Protein Required For
Disulphide Bond Formation In Vivo
pdb|1FVK|A Chain A, The 1.7 Angstrom Structure Of Wild Type Disulfide Bond
Formation Protein (Dsba)
pdb|1FVK|B Chain B, The 1.7 Angstrom Structure Of Wild Type Disulfide Bond
Formation Protein (Dsba)
pdb|1A2L|A Chain A, Reduced Dsba At 2.7 Angstroms Resolution
pdb|1A2L|B Chain B, Reduced Dsba At 2.7 Angstroms Resolution
pdb|1A2M|A Chain A, Oxidized Dsba At 2.7 Angstroms Resolution, Crystal Form
Iii
pdb|1A2M|B Chain B, Oxidized Dsba At 2.7 Angstroms Resolution, Crystal Form
Iii
pdb|1A23|A Chain A, Solution Nmr Structure Of Reduced Dsba From Escherichia
Coli, Minimized Average Structure
pdb|1A24|A Chain A, Solution Nmr Structure Of Reduced Dsba From Escherichia
Coli, Family Of 20 Structures
pdb|1A2J|A Chain A, Oxidized Dsba Crystal Form Ii
Length = 189
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 77 GIHGEEYHLAWDKFPAVALAKQ 98
GI GEEY AW+ F +L Q
Sbjct: 116 GIKGEEYDAAWNSFVVKSLVAQ 137
>pdb|3DKS|A Chain A, Dsba Substrate Complex
pdb|3DKS|B Chain B, Dsba Substrate Complex
pdb|3DKS|C Chain C, Dsba Substrate Complex
pdb|3DKS|D Chain D, Dsba Substrate Complex
Length = 189
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 77 GIHGEEYHLAWDKFPAVALAKQ 98
GI GEEY AW+ F +L Q
Sbjct: 116 GIKGEEYDAAWNSFVVKSLVAQ 137
>pdb|1TI1|A Chain A, Crystal Structure Of A Mutant Dsba
pdb|1U3A|A Chain A, Mutant Dsba
pdb|1U3A|B Chain B, Mutant Dsba
pdb|1U3A|D Chain D, Mutant Dsba
pdb|1U3A|E Chain E, Mutant Dsba
pdb|2HI7|A Chain A, Crystal Structure Of Dsba-Dsbb-Ubiquinone Complex
pdb|3E9J|B Chain B, Structure Of The Charge-Transfer Intermediate Of The
Transmembrane Redox Catalyst Dsbb
pdb|3E9J|E Chain E, Structure Of The Charge-Transfer Intermediate Of The
Transmembrane Redox Catalyst Dsbb
pdb|2ZUP|A Chain A, Updated Crystal Structure Of Dsbb-Dsba Complex From E.
Coli
pdb|2LEG|A Chain A, Membrane Protein Complex Dsbb-Dsba Structure By Joint
Calculations With Solid-State Nmr And X-Ray Experimental
Data
Length = 189
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 77 GIHGEEYHLAWDKFPAVALAKQ 98
GI GEEY AW+ F +L Q
Sbjct: 116 GIKGEEYDAAWNSFVVKSLVAQ 137
>pdb|2W5X|A Chain A, Structure Of Tab5 Alkaline Phosphatase Mutant His 135
Glu With Mg Bound In The M3 Site.
pdb|2W5X|B Chain B, Structure Of Tab5 Alkaline Phosphatase Mutant His 135
Glu With Mg Bound In The M3 Site
Length = 375
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 50 KNIILMVGDGMGLSTLTASRILK 72
KN+IL++ DG GLS ++++ K
Sbjct: 35 KNVILLISDGAGLSQISSTFYFK 57
>pdb|2IUC|B Chain B, Structure Of Alkaline Phosphatase From The Antarctic
Bacterium Tab5
Length = 375
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 50 KNIILMVGDGMGLSTLTASRILK 72
KN+IL++ DG GLS ++++ K
Sbjct: 35 KNVILLISDGAGLSQISSTFYFK 57
>pdb|2IUC|A Chain A, Structure Of Alkaline Phosphatase From The Antarctic
Bacterium Tab5
Length = 375
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 50 KNIILMVGDGMGLSTLTASRILK 72
KN+IL++ DG GLS ++++ K
Sbjct: 35 KNVILLISDGAGLSQISSTFYFK 57
>pdb|2W5V|A Chain A, Structure Of Tab5 Alkaline Phosphatase Mutant His 135
Asp With Mg Bound In The M3 Site.
pdb|2W5V|B Chain B, Structure Of Tab5 Alkaline Phosphatase Mutant His 135
Asp With Mg Bound In The M3 Site.
pdb|2W5W|A Chain A, Structure Of Tab5 Alkaline Phosphatase Mutant His 135
Asp With Zn Bound In The M3 Site.
pdb|2W5W|B Chain B, Structure Of Tab5 Alkaline Phosphatase Mutant His 135
Asp With Zn Bound In The M3 Site
Length = 375
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 50 KNIILMVGDGMGLSTLTASRILK 72
KN+IL++ DG GLS ++++ K
Sbjct: 35 KNVILLISDGAGLSQISSTFYFK 57
>pdb|3I4T|A Chain A, Crystal Structure Of Putative Diphthine Synthase From
Entamoeba Histolytica
Length = 292
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 21 KEFWYKDAQEGIRRRLALFGESHLPEDRAKNI-ILMVGDGMGLSTLTASRILKGQRMGIH 79
+EF+ K G R + + L + KN+ +L+VGD G +T + ++ Q+MGI
Sbjct: 67 EEFYGKKVIIGDRDLVETEADQILEPAKTKNVALLVVGDVYGATT-HSDIFVRCQKMGIE 125
Query: 80 GEEYHLAWDKFPAVALAKQFSSGGIILCQLGQRMGI 115
+ H A ++ G+ L + GQ + +
Sbjct: 126 VKVIHNA-------SIMNAIGCSGLQLYRFGQTVSV 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,642,339
Number of Sequences: 62578
Number of extensions: 179197
Number of successful extensions: 471
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 67
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)