Query psy16427
Match_columns 146
No_of_seqs 131 out of 890
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 21:00:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16427.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16427hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4126|consensus 100.0 3.4E-32 7.4E-37 241.0 9.7 126 15-145 41-189 (529)
2 smart00098 alkPPc Alkaline pho 99.9 2.7E-26 5.9E-31 201.0 8.2 95 50-144 1-107 (419)
3 PF00245 Alk_phosphatase: Alka 99.9 7.9E-26 1.7E-30 198.0 8.1 95 49-144 1-106 (421)
4 cd00016 alkPPc Alkaline phosph 99.9 2.3E-25 4.9E-30 193.0 8.5 98 45-144 2-118 (384)
5 PRK10518 alkaline phosphatase; 99.9 3E-25 6.4E-30 197.0 9.0 96 44-144 64-176 (476)
6 COG1785 PhoA Alkaline phosphat 99.8 6.2E-21 1.3E-25 169.3 8.4 100 43-144 53-163 (482)
7 PRK13759 arylsulfatase; Provis 91.8 0.19 4.1E-06 44.7 3.7 85 49-142 6-103 (485)
8 PF00884 Sulfatase: Sulfatase; 88.1 0.14 3E-06 40.6 -0.2 22 123-144 81-102 (308)
9 PRK10649 hypothetical protein; 83.9 1.1 2.4E-05 41.3 3.4 87 46-145 233-331 (577)
10 TIGR03417 chol_sulfatase choli 82.7 1.4 3.1E-05 39.4 3.5 83 50-142 3-99 (500)
11 PRK09598 lipid A phosphoethano 81.1 2.4 5.3E-05 38.7 4.5 84 45-144 219-312 (522)
12 KOG3867|consensus 74.8 1.8 3.8E-05 40.0 1.7 22 46-67 26-47 (528)
13 COG3119 AslA Arylsulfatase A a 73.7 2.6 5.7E-05 37.5 2.5 90 49-142 4-107 (475)
14 KOG0786|consensus 65.0 8.3 0.00018 33.2 3.6 47 47-95 2-48 (363)
15 PRK11560 phosphoethanolamine t 53.0 12 0.00025 34.7 2.7 22 124-145 318-339 (558)
16 KOG1115|consensus 48.4 18 0.0004 33.0 3.1 34 14-57 133-166 (516)
17 PF08459 UvrC_HhH_N: UvrC Heli 48.0 25 0.00054 27.4 3.4 39 49-101 79-117 (155)
18 PRK12363 phosphoglycerol trans 47.3 35 0.00075 32.7 4.9 91 47-143 154-258 (703)
19 PRK04135 cofactor-independent 44.9 18 0.00038 32.3 2.4 18 46-63 4-21 (395)
20 COG3961 Pyruvate decarboxylase 44.9 12 0.00025 34.9 1.3 14 48-61 428-441 (557)
21 KOG1184|consensus 42.4 14 0.00031 34.3 1.5 14 48-61 432-445 (561)
22 PRK11866 2-oxoacid ferredoxin 41.1 30 0.00065 29.3 3.1 25 48-72 76-104 (279)
23 cd02018 TPP_PFOR Thiamine pyro 38.3 42 0.00091 27.3 3.5 25 47-71 85-113 (237)
24 cd01450 vWFA_subfamily_ECM Von 32.5 79 0.0017 22.3 3.9 18 46-63 100-117 (161)
25 PRK03776 phosphoglycerol trans 32.2 1E+02 0.0022 30.0 5.4 21 45-65 157-177 (762)
26 PF08665 PglZ: PglZ domain; I 31.1 41 0.00088 25.9 2.3 23 50-72 1-23 (181)
27 smart00331 PP2C_SIG Sigma fact 30.7 38 0.00083 25.4 2.0 13 49-61 28-40 (193)
28 PF13519 VWA_2: von Willebrand 29.2 48 0.001 23.6 2.3 15 48-62 98-112 (172)
29 COG1576 Uncharacterized conser 28.2 1.2E+02 0.0025 23.9 4.3 22 50-71 97-120 (155)
30 cd00568 TPP_enzymes Thiamine p 27.6 41 0.00088 24.6 1.7 24 48-71 63-89 (168)
31 PF07228 SpoIIE: Stage II spor 26.5 42 0.0009 25.0 1.6 14 49-62 2-15 (193)
32 PRK11867 2-oxoglutarate ferred 25.6 84 0.0018 26.5 3.4 23 49-71 87-113 (286)
33 cd01476 VWA_integrin_invertebr 25.1 1.9E+02 0.0042 20.9 4.9 17 46-62 100-116 (163)
34 cd03182 GST_C_GTT2_like GST_C 22.5 1.2E+02 0.0026 20.5 3.2 46 20-71 42-87 (117)
35 PF00702 Hydrolase: haloacid d 22.3 60 0.0013 24.2 1.7 16 51-68 196-211 (215)
36 PF13872 AAA_34: P-loop contai 22.3 41 0.00089 29.1 0.9 14 50-63 61-74 (303)
37 cd02015 TPP_AHAS Thiamine pyro 22.2 1.1E+02 0.0024 23.3 3.3 23 49-71 68-93 (186)
38 PRK04200 cofactor-independent 22.2 55 0.0012 29.0 1.7 12 52-63 3-14 (395)
39 PRK05778 2-oxoglutarate ferred 22.1 1.1E+02 0.0023 26.2 3.4 24 48-71 87-114 (301)
40 cd01471 vWA_micronemal_protein 21.8 1.6E+02 0.0034 22.0 4.0 17 45-61 104-120 (186)
41 PF03424 CBM_17_28: Carbohydra 21.5 45 0.00099 27.3 0.9 15 46-60 178-192 (204)
42 cd05566 PTS_IIB_galactitol PTS 21.4 1.2E+02 0.0026 20.2 2.9 23 50-72 1-23 (89)
43 cd03377 TPP_PFOR_PNO Thiamine 21.2 1.1E+02 0.0024 27.1 3.4 18 49-66 151-172 (365)
44 PF13840 ACT_7: ACT domain ; P 20.8 1.1E+02 0.0023 19.7 2.5 42 52-105 8-50 (65)
45 PF02590 SPOUT_MTase: Predicte 20.8 1E+02 0.0022 23.8 2.7 17 49-65 97-115 (155)
46 PRK04024 cofactor-independent 20.4 62 0.0013 28.8 1.7 44 51-101 4-52 (412)
47 TIGR02177 PorB_KorB 2-oxoacid: 20.1 1.2E+02 0.0026 25.7 3.3 21 49-69 71-95 (287)
No 1
>KOG4126|consensus
Probab=99.97 E-value=3.4e-32 Score=241.02 Aligned_cols=126 Identities=37% Similarity=0.573 Sum_probs=110.8
Q ss_pred cccccChhHHHHHHHHHHHHHHhccCCCCCCCCCCceEEEEeecCCCHHHHHHHHHHhccccCCCCCcccccccCcccee
Q psy16427 15 HHSFLDKEFWYKDAQEGIRRRLALFGESHLPEDRAKNIILMVGDGMGLSTLTASRILKGQRMGIHGEEYHLAWDKFPAVA 94 (146)
Q Consensus 15 ~~~~~~~~~W~~~a~~~l~~~l~~~~~~~~~~~~aKNVIlfIGDGMG~~~vtaAR~~~g~~~g~~g~~~~L~~d~fp~~G 94 (146)
..+|.+++||+++|+++|.++|+.+. .+.++|||||||+|||||+++++|||+|+++.+ .||+.+|.||+||++|
T Consensus 41 ~~~e~~~~~W~~~a~~~l~~~l~~~~---~~t~kaKNVIlFlgDGMg~~TvtAaRi~~g~~~--~gee~~L~fe~FP~~G 115 (529)
T KOG4126|consen 41 PSEEEDPKFWYDQAQEELAKALKLQQ---RNTRKAKNVILFLGDGMGVSTVTAARILKGQLN--LGEETQLAFDRFPYTG 115 (529)
T ss_pred CccccchHHHHHHHHHHHHHHhhcCc---cccccCceEEEEeeCCCChhhhHHhhhhccccc--cCcCceeeeccCcccc
Confidence 44556999999999999999999776 377799999999999999999999999999876 7899999999999999
Q ss_pred eEeeccCCCee----------eeeeccCCCcccccCCcCCC-------------chhHHHHhccceeeeeeecc
Q psy16427 95 LAKQFSSGGII----------LCQLGQRMGIHGEEYHLAWD-------------KFPAVALAKHYVTAHISAQK 145 (146)
Q Consensus 95 l~~Tys~ds~v----------atG~KT~ng~IGvd~~~~~~-------------~~~~v~~~~g~~~~~~~~~~ 145 (146)
++||||+|++| +||+|+++|+|||++...+. .+-.-|+.+||.||+|+|..
T Consensus 116 lSKTy~~d~qVpDSA~tATAylcGvK~n~gtiGv~a~v~~~~C~~~~~~~~~v~SIl~wAq~AGk~tG~VTTTR 189 (529)
T KOG4126|consen 116 LSKTYCSDKQVPDSACTATAYLCGVKTNYGTIGVSAAVRFNDCGASANEGNHVISILEWAQLAGKSTGLVTTTR 189 (529)
T ss_pred ccccccccccCCchhHhHHHHhhcccccccccccccccccCCccccccccccchHHHHHHHHhCcccceEEEee
Confidence 99999999998 79999999999999765422 22334589999999999863
No 2
>smart00098 alkPPc Alkaline phosphatase homologues.
Probab=99.93 E-value=2.7e-26 Score=201.04 Aligned_cols=95 Identities=39% Similarity=0.531 Sum_probs=87.8
Q ss_pred ceEEEEeecCCCHHHHHHHHHHhccccCCCCCcccccccCccceeeEeeccCCCee----------eeeeccCCCccccc
Q psy16427 50 KNIILMVGDGMGLSTLTASRILKGQRMGIHGEEYHLAWDKFPAVALAKQFSSGGII----------LCQLGQRMGIHGEE 119 (146)
Q Consensus 50 KNVIlfIGDGMG~~~vtaAR~~~g~~~g~~g~~~~L~~d~fp~~Gl~~Tys~ds~v----------atG~KT~ng~IGvd 119 (146)
||||||||||||++++++||+|+++..|..+++..|+||+||+.|+++|||.|++| +||+||+||+||||
T Consensus 1 KNVIl~IgDGMg~~~~taaR~~~~~~~~~~~~~~~l~~d~~p~~~l~~T~~~d~~vtDSAa~aTA~atG~KT~ng~Igvd 80 (419)
T smart00098 1 KNVILFIGDGMGVSTITAARILKGQAGGKLGEETLLAFDQFPTGALSKTYNPDYQVTDSAATATAYLCGVKTYNGAIGVD 80 (419)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHhcccCCCCccccccchhhcceeeeeccCCCCCCCCcchhhheehhhcccccCceeeec
Confidence 89999999999999999999999987788889999999999999999999999988 79999999999999
Q ss_pred CC-c-CCCchhHHHHhccceeeeeeec
Q psy16427 120 YH-L-AWDKFPAVALAKHYVTAHISAQ 144 (146)
Q Consensus 120 ~~-~-~~~~~~~v~~~~g~~~~~~~~~ 144 (146)
++ . ....+.+.|+++||.||+||+.
T Consensus 81 ~~~~~~~~tIle~Ak~~G~~tGiVTT~ 107 (419)
T smart00098 81 AATGKEVPSVLEWAKKAGKSTGLVTTT 107 (419)
T ss_pred CCCCCcchhHHHHHHHcCCcEEEEeCc
Confidence 97 5 5566677779999999999985
No 3
>PF00245 Alk_phosphatase: Alkaline phosphatase; InterPro: IPR001952 This entry represents alkaline phosphatases (3.1.3.1 from EC) (ALP), which act as non-specific phosphomonoesterases to hydrolyse phosphate esters, optimally at high pH. The reaction mechanism involves the attack of a serine alkoxide on a phosphorus of the substrate to form a transient covalent enzyme-phosphate complex, followed by the hydrolysis of the serine phosphate. Alkaline phosphatases are found in all kingdoms of life, with the exception of some plants. Alkaline phosphatases are metalloenzymes that exist as a dimer, each monomer binding metal ions. The metal ions they carry can differ, although zinc and magnesium are the most common. For example, Escherichia coli alkaline phosphatase (encoded by phoA) requires the presence of two zinc ions bound at the M1 and M2 metal sites, and one magnesium ion bound at the M3 site []. However, alkaline phosphatases from Thermotoga maritima and Bacillus subtilis require cobalt for maximal activity []. In mammals, there are four alkaline phosphatase isozymes: placental, placental-like (germ cell), intestinal and tissue-nonspecific (liver/bone/kidney). All four isozymes are anchored to the outer surface of the plasma membrane by a covalently attached glycosylphosphatidylinositol (GPI) anchor []. Human alkaline phosphatases have four metal binding sites: two for zinc, one for magnesium, and one for calcium ion. Placental alkaline phosphatase (ALPP or PLAP) is highly polymorphic, with at least three common alleles []. Its activity is down-regulated by a number of effectors such as l-phenylalanine, 5'-AMP, and by p-nitrophenyl-phosphonate (PNPPate) []. The placental-like isozyme (ALPPL or PLAP-like) is elevated in germ cell tumours. The intestinal isozyme (ALPI or IAP) has the ability to detoxify lipopolysaccharide and prevent bacterial invasion across the gut mucosal barrier []. The tissue-nonspecific isozyme (ALPL) is, and may play a role in skeletal mineralisation. Defects in ALPL are a cause of hypophosphatasia, including infantile-type (OMIM:241500), childhood-type (OMIM:241510) and adult-type (OMIM:146300). Hhypophosphatasia is an inherited metabolic bone disease characterised by defective skeletal mineralisation []. This entry also contains the related enzyme streptomycin-6-phosphate phosphatase (3.1.3.39 from EC) (encoded by strK) from Streptomyces species. This enzyme is involved in the synthesis of the antibiotic streptomycin, specifically cleaving both streptomycin-6-phosphate and, more slowly, streptomycin-3-phosphate [].; GO: 0016791 phosphatase activity, 0008152 metabolic process; PDB: 1AJD_B 1ALH_B 2ANH_B 3BDF_A 1ELZ_B 1ELX_B 1B8J_B 2GA3_A 1ANJ_B 1Y6V_B ....
Probab=99.92 E-value=7.9e-26 Score=197.96 Aligned_cols=95 Identities=37% Similarity=0.537 Sum_probs=75.0
Q ss_pred CceEEEEeecCCCHHHHHHHHHHhccccCCCCCcccccccCccceeeEeeccCCCee----------eeeeccCCCcccc
Q psy16427 49 AKNIILMVGDGMGLSTLTASRILKGQRMGIHGEEYHLAWDKFPAVALAKQFSSGGII----------LCQLGQRMGIHGE 118 (146)
Q Consensus 49 aKNVIlfIGDGMG~~~vtaAR~~~g~~~g~~g~~~~L~~d~fp~~Gl~~Tys~ds~v----------atG~KT~ng~IGv 118 (146)
+||||||||||||++++++||+|.++..+..+++. |.||+||+.|+++|||.|++| +||+||+||+|||
T Consensus 1 AKNVI~~IgDGmg~~~~taar~~~~~~~~~~~~~~-l~~d~~~~~G~~~T~~~d~~vtDSAa~aTA~atG~Kt~n~~igv 79 (421)
T PF00245_consen 1 AKNVILFIGDGMGPSQVTAARIYKGGKNGRPGEEF-LAMDKFPYVGLVRTYSSDSQVTDSAAAATALATGVKTYNGAIGV 79 (421)
T ss_dssp -SEEEEEEETT-SHHHHHHHHHHHHHHTTSCTTTS-CTGGGSSEEEEEE--ESSSSS--HHHHHHHHHHSS--BTT-BSB
T ss_pred CceEEEEEeCCCCHHHHHHHHHHHhhccCCccccc-chhhhhhccceeecccCCcccCccCCcceEEeeeeeeccCCeeE
Confidence 69999999999999999999999998776655444 999999999999999999998 7999999999999
Q ss_pred cCCc-CCCchhHHHHhccceeeeeeec
Q psy16427 119 EYHL-AWDKFPAVALAKHYVTAHISAQ 144 (146)
Q Consensus 119 d~~~-~~~~~~~v~~~~g~~~~~~~~~ 144 (146)
|++. ....+-+.++++||.||+||+.
T Consensus 80 ~~~~~~~~ti~e~Ak~~G~~tGvVtT~ 106 (421)
T PF00245_consen 80 DPDGKPLETILELAKEAGKATGVVTTT 106 (421)
T ss_dssp ETTSCB---HHHHHHHTT-EEEEEEEE
T ss_pred CCCCCcchhHHHHHHHhCCeeeeeecc
Confidence 9876 4445555669999999999985
No 4
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity.
Probab=99.92 E-value=2.3e-25 Score=192.99 Aligned_cols=98 Identities=35% Similarity=0.498 Sum_probs=86.4
Q ss_pred CCCCCceEEEEeecCCCHHHHHHHHHHhccccCCCCCcccccccCccceeeEeeccCCCee----------eeeeccCCC
Q psy16427 45 PEDRAKNIILMVGDGMGLSTLTASRILKGQRMGIHGEEYHLAWDKFPAVALAKQFSSGGII----------LCQLGQRMG 114 (146)
Q Consensus 45 ~~~~aKNVIlfIGDGMG~~~vtaAR~~~g~~~g~~g~~~~L~~d~fp~~Gl~~Tys~ds~v----------atG~KT~ng 114 (146)
+.+++||||||||||||++++++||+|+++..|. ++..|.||+||+.|+++|||.|++| +||+||+||
T Consensus 2 ~~~~~kNVIl~igDGmg~~~~taar~~~~~~~~~--~~~~l~~d~~~~~G~~~T~~~~~~vtDSAa~aTA~~tG~Kt~~~ 79 (384)
T cd00016 2 NKKKAKNVILFIGDGMGVSTITAARIYKGQENGA--EEGKLLFDDFPLTGLSKTYSVDSQVTDSAATATAYATGVKTNNG 79 (384)
T ss_pred CCCCCCeEEEEEeCCCCHHHHHHHHHHhcCcccc--cccccchhccchhheeecccCCCCccccHHHHhHhhhcccccCc
Confidence 4667999999999999999999999999876554 5678999999999999999999998 799999999
Q ss_pred cccccCCc---------CCCchhHHHHhccceeeeeeec
Q psy16427 115 IHGEEYHL---------AWDKFPAVALAKHYVTAHISAQ 144 (146)
Q Consensus 115 ~IGvd~~~---------~~~~~~~v~~~~g~~~~~~~~~ 144 (146)
+|||+++. ....+.+.++++||.||+||+.
T Consensus 80 ~igv~~~~~~~~~~~~~~~~ti~e~ak~~G~~tGiVtT~ 118 (384)
T cd00016 80 AIGVSADVSRDDTDNGKPVTSVLEWAKAAGKATGIVTTT 118 (384)
T ss_pred eeeecCCCCcccccCCcchhhHHHHHHHcCCCEEEEeee
Confidence 99999976 2344456779999999999985
No 5
>PRK10518 alkaline phosphatase; Provisional
Probab=99.92 E-value=3e-25 Score=197.01 Aligned_cols=96 Identities=26% Similarity=0.334 Sum_probs=83.2
Q ss_pred CCCCCCceEEEEeecCCCHHHHHHHHHHhccccCCCCCcccccccCccceeeEeeccCCCe------e----------ee
Q psy16427 44 LPEDRAKNIILMVGDGMGLSTLTASRILKGQRMGIHGEEYHLAWDKFPAVALAKQFSSGGI------I----------LC 107 (146)
Q Consensus 44 ~~~~~aKNVIlfIGDGMG~~~vtaAR~~~g~~~g~~g~~~~L~~d~fp~~Gl~~Tys~ds~------v----------at 107 (146)
++.+++||||||||||||++++++||+|++...|. .+.||+||++|+++|||.|.+ | +|
T Consensus 64 ~~~~~aKNVIlfIGDGMg~s~itaaR~~~~g~~G~-----~~~~d~lp~~g~~~Tys~d~~~~~~~~VtDSAatATA~aT 138 (476)
T PRK10518 64 LSNKPAKNVILLIGDGMGDSEITAARNYAEGAGGF-----FKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWST 138 (476)
T ss_pred cccCCCceEEEEEeCCCCHHHHHHHHHHhcCCCCc-----cccccccccceeeeeccCCccccCcccccCchHhhHHHhh
Confidence 47888999999999999999999999999643221 335999999999999999975 5 79
Q ss_pred eeccCCCcccccCCc-CCCchhHHHHhccceeeeeeec
Q psy16427 108 QLGQRMGIHGEEYHL-AWDKFPAVALAKHYVTAHISAQ 144 (146)
Q Consensus 108 G~KT~ng~IGvd~~~-~~~~~~~v~~~~g~~~~~~~~~ 144 (146)
|+||+||+||||++. ....+.+.++++||.||+||+-
T Consensus 139 GvKT~ng~IgVd~~g~~v~TIlE~Ak~~G~aTGiVTT~ 176 (476)
T PRK10518 139 GVKTYNGALGVDIHGKDHPTLLELAKAAGKATGNVSTA 176 (476)
T ss_pred cccccCCeEeECCCCCcchhHHHHHHHcCCcEEEEecc
Confidence 999999999999987 5666677779999999999974
No 6
>COG1785 PhoA Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=99.83 E-value=6.2e-21 Score=169.30 Aligned_cols=100 Identities=25% Similarity=0.260 Sum_probs=81.2
Q ss_pred CCCCCCCceEEEEeecCCCHHHHHHHHHHhccccCCCCCcccccccCccceeeEeeccCCCee----------eeeeccC
Q psy16427 43 HLPEDRAKNIILMVGDGMGLSTLTASRILKGQRMGIHGEEYHLAWDKFPAVALAKQFSSGGII----------LCQLGQR 112 (146)
Q Consensus 43 ~~~~~~aKNVIlfIGDGMG~~~vtaAR~~~g~~~g~~g~~~~L~~d~fp~~Gl~~Tys~ds~v----------atG~KT~ 112 (146)
+....++||||+|||||||++++++||+|.+..++.. ....+.+|.. +.|..+|++.++.| +||+||+
T Consensus 53 ~~~~~~~KNVI~~IgDGMG~s~vtaaR~~~~~~~~~~-~~~~~~~~~~-~~g~~~t~s~~~~vTDSAAaaTA~atGvKTy 130 (482)
T COG1785 53 AASAGKAKNVILLIGDGMGPSTVTAARSYKGGPNGPF-KGIDTLPDTG-LIGTYSTHSSDSNVTDSAAAATAFATGVKTY 130 (482)
T ss_pred ccccccCceEEEEecCCCChHHHHHHHHhccCCCCcc-cccccccccc-ccceeeccCCCCcccchhhhhhhhhhceecc
Confidence 3468899999999999999999999999998654422 2233556665 89999999999987 7999999
Q ss_pred CCcccccCCc-CCCchhHHHHhccceeeeeeec
Q psy16427 113 MGIHGEEYHL-AWDKFPAVALAKHYVTAHISAQ 144 (146)
Q Consensus 113 ng~IGvd~~~-~~~~~~~v~~~~g~~~~~~~~~ 144 (146)
||+||||++. +-..+=+.++++||.||+||+-
T Consensus 131 Ngaigv~~~~~~~~TiLE~Ak~~GkaTGlVtTt 163 (482)
T COG1785 131 NGAIGVDPNGKPLKTILELAKEAGKATGLVTTT 163 (482)
T ss_pred CcccccCCCCcccchHHHHHHHhCcccceEEee
Confidence 9999999976 3333344669999999999974
No 7
>PRK13759 arylsulfatase; Provisional
Probab=91.78 E-value=0.19 Score=44.72 Aligned_cols=85 Identities=22% Similarity=0.202 Sum_probs=47.2
Q ss_pred CceEEEEeecCCCHHHHHHHHHHhccccCCCCCcccccccCccceeeEee--ccCCC-------eeeeeeccC-CCcccc
Q psy16427 49 AKNIILMVGDGMGLSTLTASRILKGQRMGIHGEEYHLAWDKFPAVALAKQ--FSSGG-------IILCQLGQR-MGIHGE 118 (146)
Q Consensus 49 aKNVIlfIGDGMG~~~vtaAR~~~g~~~g~~g~~~~L~~d~fp~~Gl~~T--ys~ds-------~vatG~KT~-ng~IGv 118 (146)
..||||++.|-|+...+.+. |... ...-+||+|--.|..=| |+... .+.||.-.. +|.++.
T Consensus 6 rPNIl~I~~Ddlr~d~l~~~----G~~~-----~~TPnld~La~~G~~F~nay~~~p~c~psr~sl~TG~yp~~~g~~~~ 76 (485)
T PRK13759 6 KPNIILIMVDQMRGDCLGCN----GNKA-----VETPNLDMLASEGYNFENAYSAVPSCTPARAALLTGLSQWHHGRVGY 76 (485)
T ss_pred CCCEEEEEECCCCHHHHHhc----CCCc-----CCCccHHHHHhcCceeeceecCCCcchhhHHHHHhcCChhhcCcccc
Confidence 46999999999999888764 2111 11234444433333222 22222 125555443 333332
Q ss_pred cCCc---CCCchhHHHHhccceeeeee
Q psy16427 119 EYHL---AWDKFPAVALAKHYVTAHIS 142 (146)
Q Consensus 119 d~~~---~~~~~~~v~~~~g~~~~~~~ 142 (146)
.... ....++.++++.||.|+.|.
T Consensus 77 ~~~~~~~~~~tl~~~l~~~GY~T~~~G 103 (485)
T PRK13759 77 GDVVPWNYKNTLPQEFRDAGYYTQCIG 103 (485)
T ss_pred cccccccccchHHHHHHHcCCeeEEec
Confidence 1111 23457899999999999884
No 8
>PF00884 Sulfatase: Sulfatase; InterPro: IPR000917 Sulphatases 3.1.6. from EC are enzymes that hydrolyze various sulphate esters. The sequence of different types of sulphatases are available and have shown to be structurally related [, , ]; these include: arylsulphatase A 3.1.6.8 from EC (ASA), a lysosomal enzyme which hydrolyses cerebroside sulphate; arylsulphatase B 3.1.6.12 from EC (ASB), which hydrolyses the sulphate ester group from N-acetylgalactosamine 4-sulphate residues of dermatan sulphate; arylsulphatase C (ASD) and E (ASE); steryl-sulphatase 3.1.6.2 from EC (STS), a membrane bound microsomal enzyme which hydrolyses 3-beta-hydroxy steroid sulphates; iduronate 2-sulphatase precursor 3.1.6.13 from EC (IDS), a lysosomal enzyme that hydrolyses the 2-sulphate groups from non-reducing-terminal iduronic acid residues in dermatan sulphate and heparan sulphate; N-acetylgalactosamine-6-sulphatase 3.1.6.4 from EC, which hydrolyses the 6-sulphate groups of the N-acetyl-d-galactosamine 6-sulphate units of chondroitin sulphate and the D-galactose 6-sulphate units of keratan sulphate; glucosamine-6-sulphatase 3.1.6.14 from EC (G6S), which hydrolyses the N-acetyl-D-glucosamine 6-sulphate units of heparan sulphate and keratan sulphate; N-sulphoglucosamine sulphohydrolase 3.10.1.1 from EC (sulphamidase), the lysosomal enzyme that catalyses the hydrolysis of N-sulpho-d-glucosamine into glucosamine and sulphate; sea urchin embryo arylsulphatase 3.1.6.1 from EC; green algae arylsulphatase 3.1.6.1 from EC, which plays an important role in the mineralisation of sulphates; and arylsulphatase 3.1.6.1 from EC from Escherichia coli (aslA), Klebsiella aerogenes (gene atsA) and Pseudomonas aeruginosa (gene atsA). ; GO: 0008484 sulfuric ester hydrolase activity, 0008152 metabolic process; PDB: 1P49_A 1FSU_A 2QZU_A 2W5Q_A 2W5T_A 2W5S_A 2W5R_A 3LXQ_A 1HDH_B 1E33_P ....
Probab=88.15 E-value=0.14 Score=40.61 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=15.5
Q ss_pred CCCchhHHHHhccceeeeeeec
Q psy16427 123 AWDKFPAVALAKHYVTAHISAQ 144 (146)
Q Consensus 123 ~~~~~~~v~~~~g~~~~~~~~~ 144 (146)
....++..+++.||.|..+...
T Consensus 81 ~~~~l~~~l~~~GY~t~~~~~~ 102 (308)
T PF00884_consen 81 KFPSLPDLLKKAGYRTSFFGPW 102 (308)
T ss_dssp TS--HHHHHHHTT-EEEEEEES
T ss_pred cccccHHHHhhcccccceeecc
Confidence 4456788999999999988754
No 9
>PRK10649 hypothetical protein; Provisional
Probab=83.88 E-value=1.1 Score=41.26 Aligned_cols=87 Identities=14% Similarity=0.154 Sum_probs=46.4
Q ss_pred CCCCceEEEEeecCCCHHHHHHHHHHhccccCCCCCcccccccCccc---ee--eEeeccCCCee-------eeeeccCC
Q psy16427 46 EDRAKNIILMVGDGMGLSTLTASRILKGQRMGIHGEEYHLAWDKFPA---VA--LAKQFSSGGII-------LCQLGQRM 113 (146)
Q Consensus 46 ~~~aKNVIlfIGDGMG~~~vtaAR~~~g~~~g~~g~~~~L~~d~fp~---~G--l~~Tys~ds~v-------atG~KT~n 113 (146)
..+++|||+.|||-+..+.+.+. |. +.+..-.+|++-- -+ +-..+|..... .|.. ...
T Consensus 233 ~~~p~niVlVIGES~r~d~~sly----GY-----~r~TTP~Ld~l~~~~~~~~~F~n~~S~~~~T~~Sl~~~LS~~-~~~ 302 (577)
T PRK10649 233 GNAPRTLVLVIGESTQRGRMSLY----GY-----PRETTPELDALHKTDPGLTVFNNVVTSRPYTIEILQQALTFA-DEK 302 (577)
T ss_pred cCCCCeEEEEEEeccCHhhcccc----CC-----CCCCChhHHhhhccCCCeEEeCceecCCcCHHHHHHHHccCC-ccc
Confidence 56788999999999998887753 21 1112223333311 01 11122222211 2211 110
Q ss_pred CcccccCCcCCCchhHHHHhccceeeeeeecc
Q psy16427 114 GIHGEEYHLAWDKFPAVALAKHYVTAHISAQK 145 (146)
Q Consensus 114 g~IGvd~~~~~~~~~~v~~~~g~~~~~~~~~~ 145 (146)
+. +.......++++++..||.|.-++.|.
T Consensus 303 ~~---~~~~~~~~l~~llk~aGY~T~wisNq~ 331 (577)
T PRK10649 303 NP---DLYLTQPSLMNMMKQAGYKTFWITNQQ 331 (577)
T ss_pred ch---hhhccCCCHHHHHHHCCCeEEEEeCCc
Confidence 00 111123468999999999999999874
No 10
>TIGR03417 chol_sulfatase choline-sulfatase.
Probab=82.70 E-value=1.4 Score=39.37 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=46.8
Q ss_pred ceEEEEeecCCCHHHHHHHHHHhccccCCCCCcccccccCccceeeEe--eccCCCee-------eeeeccC-CCc----
Q psy16427 50 KNIILMVGDGMGLSTLTASRILKGQRMGIHGEEYHLAWDKFPAVALAK--QFSSGGII-------LCQLGQR-MGI---- 115 (146)
Q Consensus 50 KNVIlfIGDGMG~~~vtaAR~~~g~~~g~~g~~~~L~~d~fp~~Gl~~--Tys~ds~v-------atG~KT~-ng~---- 115 (146)
.||||++-|-|+...+.+. |. ......-++|+|--.|..= .|+..... .||.-.. .|+
T Consensus 3 PNIllI~~Dd~r~d~lg~~----G~----~~~~~TPnLD~LA~eGv~F~nay~~~p~C~PSRaSllTG~yp~~~G~~~~~ 74 (500)
T TIGR03417 3 PNILILMADQLNGTLLPDY----GP----ARWLHAPNLKRLAARSVVFDNAYCASPLCAPSRASFMSGQLPSRTGAYDNA 74 (500)
T ss_pred CeEEEEEeCCCCccccccC----CC----CCcCCCCcHHHHHHhCceecccccCCCccHHHHHHHHHCCCHHhcCcccch
Confidence 6999999999998887664 11 0011233555554333332 23333322 5553221 122
Q ss_pred ccccCCcCCCchhHHHHhccceeeeee
Q psy16427 116 HGEEYHLAWDKFPAVALAKHYVTAHIS 142 (146)
Q Consensus 116 IGvd~~~~~~~~~~v~~~~g~~~~~~~ 142 (146)
..+.. ....++.++++.||.|+.|-
T Consensus 75 ~~l~~--~~~tl~~~L~~aGY~T~~~G 99 (500)
T TIGR03417 75 AEFPS--DIPTYAHYLRRAGYRTALSG 99 (500)
T ss_pred hhcCc--CCCCHHHHHHHCCCeEEEec
Confidence 12222 23467899999999999873
No 11
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=81.10 E-value=2.4 Score=38.70 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=46.1
Q ss_pred CCCCCceEEEEeecCCCHHHHHHHHHHhccccCCCCCcccccccC-c--cceeeEeeccCCCee-------eeeeccCCC
Q psy16427 45 PEDRAKNIILMVGDGMGLSTLTASRILKGQRMGIHGEEYHLAWDK-F--PAVALAKQFSSGGII-------LCQLGQRMG 114 (146)
Q Consensus 45 ~~~~aKNVIlfIGDGMG~~~vtaAR~~~g~~~g~~g~~~~L~~d~-f--p~~Gl~~Tys~ds~v-------atG~KT~ng 114 (146)
...+++|||+.|||-+..+++...-+-. +..-.+++ + +..-+...+|..... .||..-.+.
T Consensus 219 ~~~~~~~vVlViGES~R~d~~slyGY~r---------~TTP~L~~~la~~~~~f~n~~S~gt~T~~Slp~mls~~~~~~~ 289 (522)
T PRK09598 219 PNHSKSVVVLVIGESARKHNYALYGYEK---------PTNPRLSKRLATHELTLFNATSCATYTTASLECILDSSFKNTS 289 (522)
T ss_pred cCCCCCEEEEEEECCccHhhcccCCCCC---------CCChhhhhhcccCceEEcceeeCCCCHHHHHHHHccCCCcccc
Confidence 3557899999999999988776521111 11111111 0 111111112222211 444322211
Q ss_pred cccccCCcCCCchhHHHHhccceeeeeeec
Q psy16427 115 IHGEEYHLAWDKFPAVALAKHYVTAHISAQ 144 (146)
Q Consensus 115 ~IGvd~~~~~~~~~~v~~~~g~~~~~~~~~ 144 (146)
...+++++++++.||.|.-+++|
T Consensus 290 -------~~~~nl~~ilk~aGy~T~W~snq 312 (522)
T PRK09598 290 -------NAYENLPTYLTRAGIKVFWRSAN 312 (522)
T ss_pred -------cccCCHHHHHHHCCCeEEEEECC
Confidence 12357899999999999999987
No 12
>KOG3867|consensus
Probab=74.77 E-value=1.8 Score=39.99 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=17.9
Q ss_pred CCCCceEEEEeecCCCHHHHHH
Q psy16427 46 EDRAKNIILMVGDGMGLSTLTA 67 (146)
Q Consensus 46 ~~~aKNVIlfIGDGMG~~~vta 67 (146)
...++||||++.|=||+..+-.
T Consensus 26 ~~~~PNillIlaDDlG~gDlg~ 47 (528)
T KOG3867|consen 26 STDPPNILLILADDLGWGDLGC 47 (528)
T ss_pred CCCCCCEEEEEEccCCCccccc
Confidence 4568999999999999876654
No 13
>COG3119 AslA Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]
Probab=73.73 E-value=2.6 Score=37.54 Aligned_cols=90 Identities=17% Similarity=0.112 Sum_probs=49.5
Q ss_pred CceEEEEeecCCCHHHHHHHHHHhccccCCCCC-----cccccccCccceeeEeeccCCCeeeeeecc-CCCcccccC--
Q psy16427 49 AKNIILMVGDGMGLSTLTASRILKGQRMGIHGE-----EYHLAWDKFPAVALAKQFSSGGIILCQLGQ-RMGIHGEEY-- 120 (146)
Q Consensus 49 aKNVIlfIGDGMG~~~vtaAR~~~g~~~g~~g~-----~~~L~~d~fp~~Gl~~Tys~ds~vatG~KT-~ng~IGvd~-- 120 (146)
..|||+++.|=+|..++.+..--.- -.+.. ..-+.|+++ +++...+-++-+.+.||... .+|..+...
T Consensus 4 rPNil~i~~Ddlg~~~l~~~g~~~~---~~tp~~d~LA~~Gv~f~n~-y~~~~~c~PsRa~l~TGr~~~~~G~~~~~~~~ 79 (475)
T COG3119 4 RPNILIIMADDLGYGDLGAYGGPVV---GPTPNIDRLAAEGVRFTNA-YTTSPCCGPSRAALLTGRYPFRTGVGGNAEPP 79 (475)
T ss_pred CCcEEEEEeccCCCCCCCcCCCccc---cCCCCHHHHHhcCceeecc-ccCcCCCchhhhHHhhCCCccccccccccCCC
Confidence 6799999999998877764211110 00000 112445555 44333333333334666654 444444432
Q ss_pred ------CcCCCchhHHHHhccceeeeee
Q psy16427 121 ------HLAWDKFPAVALAKHYVTAHIS 142 (146)
Q Consensus 121 ------~~~~~~~~~v~~~~g~~~~~~~ 142 (146)
...-..++.+++..||.||.+-
T Consensus 80 g~~~~l~~~~~Tla~~Lk~~GY~Ta~~G 107 (475)
T COG3119 80 GYPGGLPDEVPTLAELLKEAGYYTALFG 107 (475)
T ss_pred CcccccCcccchHHHHHHHcCChhhhcc
Confidence 1123357889999999998763
No 14
>KOG0786|consensus
Probab=64.98 E-value=8.3 Score=33.24 Aligned_cols=47 Identities=19% Similarity=0.362 Sum_probs=35.4
Q ss_pred CCCceEEEEeecCCCHHHHHHHHHHhccccCCCCCcccccccCccceee
Q psy16427 47 DRAKNIILMVGDGMGLSTLTASRILKGQRMGIHGEEYHLAWDKFPAVAL 95 (146)
Q Consensus 47 ~~aKNVIlfIGDGMG~~~vtaAR~~~g~~~g~~g~~~~L~~d~fp~~Gl 95 (146)
++++||.++=|||.|+.-++.|....+.... =+.-.+.|+.||.-|.
T Consensus 2 ~~~~~i~llpgd~ig~ev~s~a~~vlq~~~~--l~~vefdf~~~~igga 48 (363)
T KOG0786|consen 2 KKRYNITLLPGDGIGPEVISVAKNVLQKAGS--LEGVEFDFEEMPIGGA 48 (363)
T ss_pred CCcceEEEcCCCCcCHHHHHHHHHHHHHhcc--ccceeeccccCccccc
Confidence 5789999999999999999999877754211 1335678888876554
No 15
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=52.99 E-value=12 Score=34.71 Aligned_cols=22 Identities=14% Similarity=0.009 Sum_probs=18.7
Q ss_pred CCchhHHHHhccceeeeeeecc
Q psy16427 124 WDKFPAVALAKHYVTAHISAQK 145 (146)
Q Consensus 124 ~~~~~~v~~~~g~~~~~~~~~~ 145 (146)
.+++-+++++.||.|+.+|+|.
T Consensus 318 ~~nlld~l~~aGy~t~w~SnQ~ 339 (558)
T PRK11560 318 EQNVFAVLKQLGFSSELFAMQS 339 (558)
T ss_pred cCCHHHHHHHCCCcEEEeeccc
Confidence 3467889999999999999884
No 16
>KOG1115|consensus
Probab=48.43 E-value=18 Score=32.96 Aligned_cols=34 Identities=15% Similarity=0.376 Sum_probs=24.5
Q ss_pred ccccccChhHHHHHHHHHHHHHHhccCCCCCCCCCCceEEEEee
Q psy16427 14 YHHSFLDKEFWYKDAQEGIRRRLALFGESHLPEDRAKNIILMVG 57 (146)
Q Consensus 14 ~~~~~~~~~~W~~~a~~~l~~~l~~~~~~~~~~~~aKNVIlfIG 57 (146)
.+...+.-++|.++=...|++ ...+|||+|+||-
T Consensus 133 ~~~~~q~c~~W~~~l~~~L~k----------~~~RPknllvFin 166 (516)
T KOG1115|consen 133 GHMDLQTCQSWMDQLNYSLIK----------EVERPKNLLVFIN 166 (516)
T ss_pred ecccHHHHHHHHHHHHHHHHH----------HhcCCccEEEEEc
Confidence 355666778999776666653 3567999999993
No 17
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=47.95 E-value=25 Score=27.36 Aligned_cols=39 Identities=31% Similarity=0.463 Sum_probs=24.7
Q ss_pred CceEEEEeecCCCHHHHHHHHHHhccccCCCCCcccccccCccceeeEeeccC
Q psy16427 49 AKNIILMVGDGMGLSTLTASRILKGQRMGIHGEEYHLAWDKFPAVALAKQFSS 101 (146)
Q Consensus 49 aKNVIlfIGDGMG~~~vtaAR~~~g~~~g~~g~~~~L~~d~fp~~Gl~~Tys~ 101 (146)
-..+|+ =|| |..|+.+|.-... .|.++ .|+.|+++--..
T Consensus 79 lPDLil--IDG-G~gQl~aa~~~l~----------~lgl~-i~viglaK~~~~ 117 (155)
T PF08459_consen 79 LPDLIL--IDG-GKGQLNAAKEVLK----------ELGLN-IPVIGLAKNDEH 117 (155)
T ss_dssp --SEEE--ESS-SHHHHHHHHHHHH----------CTT-----EEEEESSSSE
T ss_pred CCCEEE--EcC-CHHHHHHHHHHHH----------HcCCC-eEEEEEEecccc
Confidence 445544 476 8999999988875 46666 899999986543
No 18
>PRK12363 phosphoglycerol transferase I; Provisional
Probab=47.33 E-value=35 Score=32.72 Aligned_cols=91 Identities=10% Similarity=0.172 Sum_probs=44.8
Q ss_pred CCCceEEEEeecCCCHHHHHHHHHHhccccCCCCCc-----ccccccCccceeeEeeccCCCee--eeeeccC------C
Q psy16427 47 DRAKNIILMVGDGMGLSTLTASRILKGQRMGIHGEE-----YHLAWDKFPAVALAKQFSSGGII--LCQLGQR------M 113 (146)
Q Consensus 47 ~~aKNVIlfIGDGMG~~~vtaAR~~~g~~~g~~g~~-----~~L~~d~fp~~Gl~~Tys~ds~v--atG~KT~------n 113 (146)
.+.||||+..-|.|+...+.. .+. .+.++.- ..+.|++| +..--+..+.++.+ .||.--. |
T Consensus 154 aKk~NVVvI~LESle~~~id~----~~~-~~lTPnLd~Lakegl~FtNf-y~~~G~g~Ti~Gl~as~~GlPl~~~~g~~N 227 (703)
T PRK12363 154 QKRKNIVWIYGESLERTYFDE----DVF-PGLMPNLTRLATEAVDVRNL-ASTEGSGWTIAGMVASMCGVPLTTAQGDEN 227 (703)
T ss_pred cCCCCEEEEEEccCchhhhcC----CCC-CCcChhHHHHHhCCeeECCe-EeCCCCCcchhhHhHHHhCCCCcCCCCccc
Confidence 468999999999998644321 110 0111111 24566666 21111122223333 3554311 1
Q ss_pred Cccccc-CCcCCCchhHHHHhccceeeeeee
Q psy16427 114 GIHGEE-YHLAWDKFPAVALAKHYVTAHISA 143 (146)
Q Consensus 114 g~IGvd-~~~~~~~~~~v~~~~g~~~~~~~~ 143 (146)
..-+.. ..+....++.+++..||.|+.+..
T Consensus 228 t~~~~~~f~p~~~~La~ILkq~GY~Taf~hG 258 (703)
T PRK12363 228 SMDRMGHFLPEARCLGDYLKDQGYTNHYVGG 258 (703)
T ss_pred ccccccccCcccchHHHHHHhCCCcEEEEeC
Confidence 111111 011123457899999999998864
No 19
>PRK04135 cofactor-independent phosphoglycerate mutase; Provisional
Probab=44.94 E-value=18 Score=32.34 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=14.1
Q ss_pred CCCCceEEEEeecCCCHH
Q psy16427 46 EDRAKNIILMVGDGMGLS 63 (146)
Q Consensus 46 ~~~aKNVIlfIGDGMG~~ 63 (146)
.+.++-+|++|.||||--
T Consensus 4 ~~~~~K~v~ii~DGmgD~ 21 (395)
T PRK04135 4 QKNDSKIVLLVLDGLGGL 21 (395)
T ss_pred ccCCCcEEEEEecCCCCC
Confidence 345667999999999864
No 20
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=44.93 E-value=12 Score=34.90 Aligned_cols=14 Identities=36% Similarity=0.707 Sum_probs=11.4
Q ss_pred CCceEEEEeecCCC
Q psy16427 48 RAKNIILMVGDGMG 61 (146)
Q Consensus 48 ~aKNVIlfIGDGMG 61 (146)
+-++||||||||--
T Consensus 428 ~drR~IL~iGDGs~ 441 (557)
T COG3961 428 PDRRVILFIGDGSL 441 (557)
T ss_pred CCccEEEEEcCchh
Confidence 44899999999853
No 21
>KOG1184|consensus
Probab=42.43 E-value=14 Score=34.32 Aligned_cols=14 Identities=43% Similarity=0.707 Sum_probs=11.6
Q ss_pred CCceEEEEeecCCC
Q psy16427 48 RAKNIILMVGDGMG 61 (146)
Q Consensus 48 ~aKNVIlfIGDGMG 61 (146)
+-|+||+|||||-=
T Consensus 432 ~e~rvilfiGDGs~ 445 (561)
T KOG1184|consen 432 PEKRVILFIGDGSF 445 (561)
T ss_pred CCceEEEEecCccc
Confidence 34999999999963
No 22
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=41.06 E-value=30 Score=29.25 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=20.3
Q ss_pred CCceEEEEeecC----CCHHHHHHHHHHh
Q psy16427 48 RAKNIILMVGDG----MGLSTLTASRILK 72 (146)
Q Consensus 48 ~aKNVIlfIGDG----MG~~~vtaAR~~~ 72 (146)
+.++||.++||| ||.+.+..|..+.
T Consensus 76 Pd~~VV~i~GDG~~f~ig~~eL~tA~rrn 104 (279)
T PRK11866 76 PKLTVIGYGGDGDGYGIGLGHLPHAARRN 104 (279)
T ss_pred CCCcEEEEECChHHHHccHHHHHHHHHHC
Confidence 358899999999 8888888776554
No 23
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=38.31 E-value=42 Score=27.26 Aligned_cols=25 Identities=32% Similarity=0.708 Sum_probs=19.5
Q ss_pred CCCceEEEEeecC----CCHHHHHHHHHH
Q psy16427 47 DRAKNIILMVGDG----MGLSTLTASRIL 71 (146)
Q Consensus 47 ~~aKNVIlfIGDG----MG~~~vtaAR~~ 71 (146)
.+.|.||.+.||| ||+..+..+..+
T Consensus 85 ~p~~~Vv~i~GDG~~~~~g~~~l~ta~~~ 113 (237)
T cd02018 85 DKKKDVVVIGGDGATYDIGFGALSHSLFR 113 (237)
T ss_pred CCCCcEEEEeCchHHHhccHHHHHHHHHc
Confidence 3467899999999 788887766544
No 24
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=32.51 E-value=79 Score=22.28 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=14.8
Q ss_pred CCCCceEEEEeecCCCHH
Q psy16427 46 EDRAKNIILMVGDGMGLS 63 (146)
Q Consensus 46 ~~~aKNVIlfIGDGMG~~ 63 (146)
+..++++|++|.||....
T Consensus 100 ~~~~~~~iiliTDG~~~~ 117 (161)
T cd01450 100 RENVPKVIIVLTDGRSDD 117 (161)
T ss_pred cCCCCeEEEEECCCCCCC
Confidence 457889999999997654
No 25
>PRK03776 phosphoglycerol transferase I; Provisional
Probab=32.21 E-value=1e+02 Score=30.02 Aligned_cols=21 Identities=10% Similarity=0.286 Sum_probs=17.3
Q ss_pred CCCCCceEEEEeecCCCHHHH
Q psy16427 45 PEDRAKNIILMVGDGMGLSTL 65 (146)
Q Consensus 45 ~~~~aKNVIlfIGDGMG~~~v 65 (146)
...+.||||+++-..|+-..+
T Consensus 157 ~p~kK~NVViI~LESle~ty~ 177 (762)
T PRK03776 157 IPNPKLNLVYIYGESLERTYF 177 (762)
T ss_pred cCCCCCcEEEEEEecCChhhh
Confidence 356788999999999987655
No 26
>PF08665 PglZ: PglZ domain; InterPro: IPR013973 This entry is a member of the Alkaline phosphatase clan.
Probab=31.10 E-value=41 Score=25.92 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=16.5
Q ss_pred ceEEEEeecCCCHHHHHHHHHHh
Q psy16427 50 KNIILMVGDGMGLSTLTASRILK 72 (146)
Q Consensus 50 KNVIlfIGDGMG~~~vtaAR~~~ 72 (146)
+-|.++|.|||+..+-.--.-+.
T Consensus 1 ~kv~liv~Dgmrye~~~eL~~~L 23 (181)
T PF08665_consen 1 KKVALIVSDGMRYEQARELAESL 23 (181)
T ss_pred CeEEEEEEcCCCHHHHHHHHHHH
Confidence 34899999999998765443333
No 27
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=30.68 E-value=38 Score=25.41 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=11.2
Q ss_pred CceEEEEeecCCC
Q psy16427 49 AKNIILMVGDGMG 61 (146)
Q Consensus 49 aKNVIlfIGDGMG 61 (146)
....++.|+||||
T Consensus 28 ~~~~~~~v~Dg~G 40 (193)
T smart00331 28 EGRLLIAIADVMG 40 (193)
T ss_pred CCeEEEEEEecCC
Confidence 4479999999998
No 28
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=29.16 E-value=48 Score=23.55 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=11.6
Q ss_pred CCceEEEEeecCCCH
Q psy16427 48 RAKNIILMVGDGMGL 62 (146)
Q Consensus 48 ~aKNVIlfIGDGMG~ 62 (146)
..++.|++|.||-.-
T Consensus 98 ~~~~~iv~iTDG~~~ 112 (172)
T PF13519_consen 98 NRRRAIVLITDGEDN 112 (172)
T ss_dssp SEEEEEEEEES-TTH
T ss_pred CCceEEEEecCCCCC
Confidence 578999999999754
No 29
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=28.18 E-value=1.2e+02 Score=23.92 Aligned_cols=22 Identities=18% Similarity=0.501 Sum_probs=14.9
Q ss_pred ceEEEEee--cCCCHHHHHHHHHH
Q psy16427 50 KNIILMVG--DGMGLSTLTASRIL 71 (146)
Q Consensus 50 KNVIlfIG--DGMG~~~vtaAR~~ 71 (146)
++|.|+|| ||+..+-...|...
T Consensus 97 ~~i~f~IGG~~Gl~~~~~~~a~~~ 120 (155)
T COG1576 97 RDISFLIGGADGLSEAVKARADQV 120 (155)
T ss_pred CeEEEEEeCcccCCHHHHHHHhhh
Confidence 88999998 56666655544433
No 30
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=27.58 E-value=41 Score=24.60 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=17.6
Q ss_pred CCceEEEEeecC---CCHHHHHHHHHH
Q psy16427 48 RAKNIILMVGDG---MGLSTLTASRIL 71 (146)
Q Consensus 48 ~aKNVIlfIGDG---MG~~~vtaAR~~ 71 (146)
+.+.||.|+||| |+...+..+..+
T Consensus 63 ~~~~vv~~~GDG~~~~~~~~l~ta~~~ 89 (168)
T cd00568 63 PDRPVVCIAGDGGFMMTGQELATAVRY 89 (168)
T ss_pred CCCcEEEEEcCcHHhccHHHHHHHHHc
Confidence 368999999998 466666665544
No 31
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=26.48 E-value=42 Score=25.03 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=11.7
Q ss_pred CceEEEEeecCCCH
Q psy16427 49 AKNIILMVGDGMGL 62 (146)
Q Consensus 49 aKNVIlfIGDGMG~ 62 (146)
..++.++|||+||-
T Consensus 2 ~~~~~~~v~D~~Gh 15 (193)
T PF07228_consen 2 DGRYFIIVGDVSGH 15 (193)
T ss_dssp TTEEEEEEEEESSS
T ss_pred CCEEEEEEEEecCC
Confidence 46889999999974
No 32
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=25.62 E-value=84 Score=26.52 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=16.9
Q ss_pred CceEEEEeecC----CCHHHHHHHHHH
Q psy16427 49 AKNIILMVGDG----MGLSTLTASRIL 71 (146)
Q Consensus 49 aKNVIlfIGDG----MG~~~vtaAR~~ 71 (146)
-+.||.++||| ||.+.+..|.-+
T Consensus 87 d~~VV~i~GDG~~f~mg~~eL~tA~r~ 113 (286)
T PRK11867 87 DLTVIVVTGDGDALAIGGNHFIHALRR 113 (286)
T ss_pred CCcEEEEeCccHHHhCCHHHHHHHHHh
Confidence 47899999999 566666655444
No 33
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=25.07 E-value=1.9e+02 Score=20.87 Aligned_cols=17 Identities=12% Similarity=0.391 Sum_probs=13.0
Q ss_pred CCCCceEEEEeecCCCH
Q psy16427 46 EDRAKNIILMVGDGMGL 62 (146)
Q Consensus 46 ~~~aKNVIlfIGDGMG~ 62 (146)
++.++.+|+++.||...
T Consensus 100 r~~~~~~villTDG~~~ 116 (163)
T cd01476 100 REGIPKVVVVLTDGRSH 116 (163)
T ss_pred CCCCCeEEEEECCCCCC
Confidence 34456899999999874
No 34
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=22.46 E-value=1.2e+02 Score=20.51 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=31.7
Q ss_pred ChhHHHHHHHHHHHHHHhccCCCCCCCCCCceEEEEeecCCCHHHHHHHHHH
Q psy16427 20 DKEFWYKDAQEGIRRRLALFGESHLPEDRAKNIILMVGDGMGLSTLTASRIL 71 (146)
Q Consensus 20 ~~~~W~~~a~~~l~~~l~~~~~~~~~~~~aKNVIlfIGDGMG~~~vtaAR~~ 71 (146)
..+.|.+++.+.|.+.++.-.+ .+..+ . ++.||.++++.+.++-.+
T Consensus 42 ~~~~~~~~~~~~l~~~l~~le~-~L~~~---~--~l~gd~~t~aDi~l~~~~ 87 (117)
T cd03182 42 QVPEWGERSKARAADFLAYLDT-RLAGS---P--YVAGDRFTIADITAFVGL 87 (117)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-HhcCC---C--cccCCCCCHHHHHHHHHh
Confidence 4467889999999888774320 11211 1 788999999999877544
No 35
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=22.33 E-value=60 Score=24.22 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=11.5
Q ss_pred eEEEEeecCCCHHHHHHH
Q psy16427 51 NIILMVGDGMGLSTLTAS 68 (146)
Q Consensus 51 NVIlfIGDGMG~~~vtaA 68 (146)
+.++|||||. +-+.|+
T Consensus 196 ~~v~~vGDg~--nD~~al 211 (215)
T PF00702_consen 196 GEVAMVGDGV--NDAPAL 211 (215)
T ss_dssp GGEEEEESSG--GHHHHH
T ss_pred CEEEEEccCH--HHHHHH
Confidence 3799999998 444443
No 36
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=22.27 E-value=41 Score=29.08 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=11.8
Q ss_pred ceEEEEeecCCCHH
Q psy16427 50 KNIILMVGDGMGLS 63 (146)
Q Consensus 50 KNVIlfIGDGMG~~ 63 (146)
+.--||||||.|+.
T Consensus 61 ~R~Gf~lGDGtGvG 74 (303)
T PF13872_consen 61 SRAGFFLGDGTGVG 74 (303)
T ss_pred cCcEEEeccCCCcC
Confidence 45689999999987
No 37
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=22.20 E-value=1.1e+02 Score=23.31 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=16.3
Q ss_pred CceEEEEeecC---CCHHHHHHHHHH
Q psy16427 49 AKNIILMVGDG---MGLSTLTASRIL 71 (146)
Q Consensus 49 aKNVIlfIGDG---MG~~~vtaAR~~ 71 (146)
.+-||.++||| |..+.+..+..+
T Consensus 68 ~~~vv~i~GDG~f~~~~~eL~ta~~~ 93 (186)
T cd02015 68 DKTVICIDGDGSFQMNIQELATAAQY 93 (186)
T ss_pred CCeEEEEEcccHHhccHHHHHHHHHh
Confidence 46799999998 666666555544
No 38
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional
Probab=22.15 E-value=55 Score=28.96 Aligned_cols=12 Identities=42% Similarity=0.858 Sum_probs=10.3
Q ss_pred EEEEeecCCCHH
Q psy16427 52 IILMVGDGMGLS 63 (146)
Q Consensus 52 VIlfIGDGMG~~ 63 (146)
+|++|+||||--
T Consensus 3 ~v~~i~DG~~D~ 14 (395)
T PRK04200 3 YIILIGDGMADE 14 (395)
T ss_pred EEEEEecCCCCC
Confidence 689999999863
No 39
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=22.10 E-value=1.1e+02 Score=26.18 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=17.1
Q ss_pred CCceEEEEeecC----CCHHHHHHHHHH
Q psy16427 48 RAKNIILMVGDG----MGLSTLTASRIL 71 (146)
Q Consensus 48 ~aKNVIlfIGDG----MG~~~vtaAR~~ 71 (146)
+-+.||.+.||| ||.+.+..|.-+
T Consensus 87 pd~~VV~i~GDG~~~~mg~~eL~tA~r~ 114 (301)
T PRK05778 87 PDLEVIVVGGDGDLASIGGGHFIHAGRR 114 (301)
T ss_pred CCCcEEEEeCccHHHhccHHHHHHHHHH
Confidence 357899999999 666666555444
No 40
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=21.84 E-value=1.6e+02 Score=22.02 Aligned_cols=17 Identities=18% Similarity=0.567 Sum_probs=13.3
Q ss_pred CCCCCceEEEEeecCCC
Q psy16427 45 PEDRAKNIILMVGDGMG 61 (146)
Q Consensus 45 ~~~~aKNVIlfIGDGMG 61 (146)
.++.++.+|+|+-||-.
T Consensus 104 ~r~~~~~~villTDG~~ 120 (186)
T cd01471 104 NRENAPQLVIIMTDGIP 120 (186)
T ss_pred CcccCceEEEEEccCCC
Confidence 34557789999999985
No 41
>PF03424 CBM_17_28: Carbohydrate binding domain (family 17/28); InterPro: IPR005086 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. CBM17 from CAZY binds to amorphous cellulose and soluble beta-1,4-glucans, with a minimal binding requirement of cellotriose and optimal affinity for cellohexaose. Family 17 CBMs appear to have a very shallow binding cleft that may be more accessible to cellulose chains in non-crystalline cellulose than the deeper binding clefts of family 4 CBMs []. CBM28 from CAZY does not compete with CBM17 modules when binding to non-crystalline cellulose but does have a "beta-jelly roll" topology, which is similar in structure to the CBM17 domains. Sequence and structural conservation in families 17 and 28 suggests that they have evolved through gene duplication and subsequent divergence []. This entry includes family 17 and 28 which show structural homology. The domain is found in a number of alkaline cellulases.; GO: 0008810 cellulase activity, 0030245 cellulose catabolic process; PDB: 3ACI_A 3ACH_A 3ACF_A 3ACG_A 1J83_B 1J84_A 1UWW_A 1G0C_A 1G01_A.
Probab=21.46 E-value=45 Score=27.35 Aligned_cols=15 Identities=47% Similarity=0.749 Sum_probs=11.6
Q ss_pred CCCCceEEEEeecCC
Q psy16427 46 EDRAKNIILMVGDGM 60 (146)
Q Consensus 46 ~~~aKNVIlfIGDGM 60 (146)
...-+|+||||||+-
T Consensus 178 Dt~L~niiL~v~d~n 192 (204)
T PF03424_consen 178 DTELRNIILFVGDEN 192 (204)
T ss_dssp T-EEEEEEEEEEEES
T ss_pred CceeeeEEEEEEeCC
Confidence 345689999999984
No 42
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=21.36 E-value=1.2e+02 Score=20.20 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=18.0
Q ss_pred ceEEEEeecCCCHHHHHHHHHHh
Q psy16427 50 KNIILMVGDGMGLSTLTASRILK 72 (146)
Q Consensus 50 KNVIlfIGDGMG~~~vtaAR~~~ 72 (146)
++|++.-|.|||.+++-..++-+
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~ 23 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKE 23 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHH
Confidence 57999999999999766665443
No 43
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=21.24 E-value=1.1e+02 Score=27.15 Aligned_cols=18 Identities=33% Similarity=0.626 Sum_probs=14.1
Q ss_pred CceEEEEeecCC----CHHHHH
Q psy16427 49 AKNIILMVGDGM----GLSTLT 66 (146)
Q Consensus 49 aKNVIlfIGDGM----G~~~vt 66 (146)
.++||++-|||. |.+++.
T Consensus 151 ~~~v~v~gGDG~~ydIG~~~l~ 172 (365)
T cd03377 151 KKSVWIIGGDGWAYDIGYGGLD 172 (365)
T ss_pred ccceEEEecchhhhccchhhHH
Confidence 369999999994 666663
No 44
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=20.78 E-value=1.1e+02 Score=19.71 Aligned_cols=42 Identities=24% Similarity=0.240 Sum_probs=27.5
Q ss_pred EEEEeecCCCH-HHHHHHHHHhccccCCCCCcccccccCccceeeEeeccCCCee
Q psy16427 52 IILMVGDGMGL-STLTASRILKGQRMGIHGEEYHLAWDKFPAVALAKQFSSGGII 105 (146)
Q Consensus 52 VIlfIGDGMG~-~~vtaAR~~~g~~~g~~g~~~~L~~d~fp~~Gl~~Tys~ds~v 105 (146)
.|-.+|+||.. ..=-+++++. .|.-...+....+ ||..++.+
T Consensus 8 ~i~v~g~g~~~~~~Gv~a~i~~-----------~La~~~I~i~~is-S~~~~~il 50 (65)
T PF13840_consen 8 KISVVGPGLRFDVPGVAAKIFS-----------ALAEAGINIFMIS-SEISISIL 50 (65)
T ss_dssp EEEEEEECGTTTSHHHHHHHHH-----------HHHHTTS-ECEEE-ESSEEEEE
T ss_pred EEEEEccccCCCcccHHHHHHH-----------HHHHCCCCEEEEE-EeeeEEEE
Confidence 46789999976 4445677776 4666677776666 66665543
No 45
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=20.75 E-value=1e+02 Score=23.78 Aligned_cols=17 Identities=24% Similarity=0.645 Sum_probs=8.5
Q ss_pred CceEEEEee--cCCCHHHH
Q psy16427 49 AKNIILMVG--DGMGLSTL 65 (146)
Q Consensus 49 aKNVIlfIG--DGMG~~~v 65 (146)
.++|.|+|| ||.+..-.
T Consensus 97 ~~~i~F~IGG~~G~~~~~~ 115 (155)
T PF02590_consen 97 KSDIVFIIGGADGLSEEVR 115 (155)
T ss_dssp S-EEEEEE-BTTB--HHHH
T ss_pred CceEEEEEecCCCCCHHHH
Confidence 568888888 55554333
No 46
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=20.39 E-value=62 Score=28.84 Aligned_cols=44 Identities=23% Similarity=0.303 Sum_probs=23.9
Q ss_pred eEEEEeecCCCHHHHHHHHHHhccccCCCC--CcccccccCc---cceeeEeeccC
Q psy16427 51 NIILMVGDGMGLSTLTASRILKGQRMGIHG--EEYHLAWDKF---PAVALAKQFSS 101 (146)
Q Consensus 51 NVIlfIGDGMG~~~vtaAR~~~g~~~g~~g--~~~~L~~d~f---p~~Gl~~Tys~ 101 (146)
-+|++|+||||--.+. ..+|+++ ....-+||++ -..|+++|...
T Consensus 4 k~v~~i~DG~~D~p~~-------~l~gkTpLe~A~tPnlD~lA~~g~~Gl~~~v~~ 52 (412)
T PRK04024 4 KILLIILDGLGDRPVK-------ELGGKTPLEAANTPNMDKLAKEGICGLMDPISP 52 (412)
T ss_pred cEEEEEecCCCCCccc-------ccCCCChhhccCCCChHHHHHcCCcccceeeCC
Confidence 4789999999864331 1223321 1123344444 35677777654
No 47
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=20.12 E-value=1.2e+02 Score=25.73 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=15.8
Q ss_pred CceEEEEeecC----CCHHHHHHHH
Q psy16427 49 AKNIILMVGDG----MGLSTLTASR 69 (146)
Q Consensus 49 aKNVIlfIGDG----MG~~~vtaAR 69 (146)
-+.||.++||| ||.+.+..|.
T Consensus 71 d~~VVai~GDG~f~~mg~~eL~tA~ 95 (287)
T TIGR02177 71 HLKVIVVGGDGDLYGIGGNHFVAAG 95 (287)
T ss_pred CCcEEEEeCchHHHhccHHHHHHHH
Confidence 47899999998 5666665553
Done!