RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16427
(146 letters)
>1zed_A Alkaline phosphatase; phosphoserine, substrate analog, hydro; HET:
NAG PNP; 1.57A {Homo sapiens} SCOP: c.76.1.1 PDB:
1zeb_A* 1zef_A* 2glq_A* 3mk0_A* 3mk1_A* 3mk2_A* 1ew2_A*
Length = 484
Score = 94.9 bits (236), Expect = 6e-24
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 20 DKEFWYKDAQEGIRRRLALFGESHLPEDRAKNIILMVGDGMGLSTLTASRILKGQRMGIH 79
+ +FW ++A E + L + AKN+I+ +GDGMG+ST+TA+RILKGQ+
Sbjct: 8 NPDFWNREAAEALGAAKKL----QPAQTAAKNLIIFLGDGMGVSTVTAARILKGQKKDKL 63
Query: 80 GEEYHLAWDKFPAVALAKQFSSGGII 105
G E LA D+FP VAL+K ++ +
Sbjct: 64 GPEIPLAMDRFPYVALSKTYNVDKHV 89
>1k7h_A Alkaline phosphatase; hydrolase, transferase, phosphomonoester,
extended beta SHEE triad, metal triad; HET: NAG; 1.92A
{Pandalus borealis} SCOP: c.76.1.1 PDB: 1shq_A* 1shn_A*
Length = 476
Score = 91.8 bits (228), Expect = 8e-23
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 5/86 (5%)
Query: 20 DKEFWYKDAQEGIRRRLALFGESHLPEDRAKNIILMVGDGMGLSTLTASRILKGQRMGIH 79
DK +W KDAQ+ + ++L + L E +AKN+I +GDGM LST+TA+RI KG G
Sbjct: 3 DKAYWNKDAQDALDKQLGI----KLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTG-K 57
Query: 80 GEEYHLAWDKFPAVALAKQFSSGGII 105
E ++W++F AL+K +++ +
Sbjct: 58 FEREKISWEEFDFAALSKTYNTDKQV 83
>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A
{Halobacterium salinarum R1} PDB: 2x98_A
Length = 473
Score = 76.4 bits (188), Expect = 2e-17
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 48 RAKNIILMVGDGMGLSTLTASRILKGQRMGIH-------GEEYHLAWDKFPAVALAKQFS 100
A N I + DGMG + ++A+R L + E +D F + F
Sbjct: 46 PAANAIAYIVDGMGQTQISAARYLNAYKTAPERFPLNVSPAETPTGFDAFSSRGSMTTFP 105
Query: 101 S 101
Sbjct: 106 D 106
>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer,
psychrophilic bacteria, crystallography, hydrolase;
1.40A {Vibrio SP}
Length = 502
Score = 75.7 bits (186), Expect = 4e-17
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 48 RAKNIILMVGDGMGLSTLTASRILKGQRMGIHGEEYHLAW---DKFPAVALAKQFSSGGI 104
KN+ILM+GDGMG + Q + A + + + I
Sbjct: 2 EIKNVILMIGDGMGPQQVGLLETYANQAPNSIYKGNKTAIYQLAQEGVIGSSLTHPEDAI 61
Query: 105 I 105
+
Sbjct: 62 V 62
>3tg0_A Apase, alkaline phosphatase; hydrolase; 1.20A {Escherichia coli}
PDB: 1b8j_A 1ed9_A 1ew8_A 1ew9_A 1ed8_A 1y6v_A 3bdg_B
1elx_A 2g9y_A 2ga3_A* 3bdh_A 3cmr_A 1elz_A 1hjk_A*
1hqa_A 1ely_A 3dyc_A 1ali_A 1alj_A 3bdf_A ...
Length = 449
Score = 74.1 bits (182), Expect = 1e-16
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 16 HSFLDKEFWYKDAQEGIRRRLALFGESHLPED----RAKNIILMVGDGMGLSTLTASRIL 71
++ G RRL + L + AKNIIL++GDGMG S +TA+R
Sbjct: 5 PVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNY 64
Query: 72 KGQRMG-IHGEEYHLAWDKFPAVALAKQFSSGGII 105
G G + ++ AL K+ +
Sbjct: 65 AEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYV 99
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase;
HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A*
2w5x_A* 2iuc_A 2iuc_B
Length = 375
Score = 70.4 bits (173), Expect = 3e-15
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 48 RAKNIILMVGDGMGLSTLTASRILKGQRMGIHGEEYHLAWDKFPAVALAKQFSSGGII 105
KN+IL++ DG GLS ++++ K + +F + L K SS +
Sbjct: 33 TPKNVILLISDGAGLSQISSTFYFKSGT---------PNYTQFKNIGLIKTSSSREDV 81
>3a52_A Cold-active alkaline phosphatase; hydrolase; 2.20A {Shewanella}
Length = 400
Score = 64.7 bits (158), Expect = 3e-13
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 51 NIILMVGDGMGLSTLTASRILKGQRMGIHGEEYHLAWDKFPAVALAKQFSS 101
+I+MVGDGMG + +A R + E +D+ V +A + +
Sbjct: 2 GMIIMVGDGMGPAYTSAYRYFQDNPDT--EEIEQTVFDRLL-VGMASTYPA 49
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.047
Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 44/166 (26%)
Query: 11 TSQYHHSFLDKEFWYKDAQEGIRRRLALFG-----ESHLPEDR---------AKNIILMV 56
+ +S L ++ EG + +A+FG + + E R ++I
Sbjct: 137 FDKKSNSAL-----FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS 191
Query: 57 GDGMGLSTLTASRILKGQRMGIHGEEYHL-AW----DKFPAVA-LAK-QFSSGGIILCQL 109
+ LS L + + +++ G ++ W P L S I + QL
Sbjct: 192 AE--TLSELIRTTL-DAEKVFTQG--LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL 246
Query: 110 GQ------RMGIHGEEY--HLAWDKFPAVALAKHYVTAH-ISAQKS 146
+G E +L A ++ VTA I+ S
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKG----ATGHSQGLVTAVAIAETDS 288
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.44
Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 38/122 (31%)
Query: 4 PSYVVTLTSQYHHSFLDKEFWYKDAQEGIRR---RLALFGE--SHLPEDR-AKNIIL--M 55
PS + + + Y D Q + RL + + L E R AKN+++ +
Sbjct: 105 PSMMTRMYIEQRDRL------YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 56 VGDGMGLSTLTAS-----RILKGQRMGIHGEEYHLAWDKFPAVALAKQFSSGGII----- 105
+G G + + ++ I W + L S ++
Sbjct: 159 LG--SGKTWVALDVCLSYKVQCKMDFKIF-------W-----LNLKNCNSPETVLEMLQK 204
Query: 106 LC 107
L
Sbjct: 205 LL 206
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.65
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 13/34 (38%)
Query: 62 LSTLTASRILKGQRMGIHGEEYHLAWDKFPAVAL 95
L L AS LK Y A D PA+A+
Sbjct: 22 LKKLQAS--LK---------LY--ADDSAPALAI 42
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase
system (PTS), P-loop; NMR {Escherichia coli}
Length = 113
Score = 26.7 bits (59), Expect = 1.8
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 39 FGESHLPEDRAKNIILMVGDGMGLSTLTASRI 70
E+ + + II+ G + ST+ A I
Sbjct: 11 HHENLYFQGSKRKIIVACGGAVATSTMAAEEI 42
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase
(NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia
oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A*
1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A*
1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Length = 314
Score = 26.6 bits (59), Expect = 3.4
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 24 WYKDAQEGIRRRLALFGES----HLPEDRAKNIILMVGDGMGL 62
+ D + G + L G +P+D II M+G G G+
Sbjct: 135 FLCDLKPG--AEVKLTGPVGKEMLMPKDPNATII-MLGTGTGI 174
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG,
transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Length = 157
Score = 26.0 bits (58), Expect = 3.9
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 5 SYVVTLTSQYHHSF-LDKEFWYKDAQEGIRRRLALFGESHLPEDRAKNIILMVGDGMGLS 63
+ TS+ S +D + I R L+ G+ + +D II +VGD +
Sbjct: 48 PVDMVATSEVGVSLTIDND----KNLPDIVRALSDIGDVTVDKDMV--IICIVGDMEWDN 101
Query: 64 TLTASRI 70
+RI
Sbjct: 102 VGFEARI 108
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.9 bits (56), Expect = 4.4
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 20 DKEFWYKDAQEGIRR-----RLALFGESHLPEDRAKNII 53
D E W + E + + R+A + + +II
Sbjct: 119 DLEEWNQRQSEQVEKNKINNRIA---DKAFYQQPDADII 154
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR,
reductase reductase, phycobilisome, thylakoid; HET: FAD;
1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A*
2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A*
1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A*
1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Length = 304
Score = 26.2 bits (58), Expect = 4.8
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 24 WYKDAQEGIRRRLALFGES----HLPEDRAKNIILMVGDGMGL 62
+ + G + + G LP+D N+I M+ G G+
Sbjct: 121 YLTHIEPG--SEVKITGPVGKEMLLPDDPEANVI-MLAGGTGI 160
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric
regulation, ACT domain, transferase, amino acid
biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP:
c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Length = 449
Score = 26.1 bits (58), Expect = 5.6
Identities = 9/71 (12%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 5 SYVVTLTSQYHHSF-LDKEFWYKDAQ----EGIRRRLALFGESHLPEDRAKNIILMVGDG 59
S + TS+ + LD + + L+ + E A ++ ++G+
Sbjct: 338 SVDLITTSEVSVALTLDTTGSTSTGDTLLTQSLLMELSALCRVEVEEGLA--LVALIGND 395
Query: 60 MGLSTLTASRI 70
+ + +
Sbjct: 396 LSKACGVGKEV 406
>3b72_A Lysozyme C; hen egg-white lysozyme, protein-SDS complex, MPD,
allergen, antimicrobial, bacteriolytic enzyme
glycosidase, hydrolase; 1.50A {Gallus gallus} SCOP:
d.2.1.2 PDB: 3b6l_A 1lsy_A 1lsz_A*
Length = 147
Score = 25.5 bits (55), Expect = 6.6
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 90 FPAVALAKQFSSGGIILCQLGQRMGIHGEEYHLAWDKFPAVALAKH 135
P AL K F C+L M HG + + + V AK
Sbjct: 12 LPLAALGKVFGR-----CELAAAMKRHGLDNYRGYSLGNWVCAAKF 52
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase;
HET: FAD; 2.50A {Synechococcus SP}
Length = 402
Score = 25.6 bits (56), Expect = 7.1
Identities = 6/20 (30%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 43 HLPEDRAKNIILMVGDGMGL 62
LP+D ++ M+ G G+
Sbjct: 244 LLPDDEDATVV-MLATGTGI 262
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase,
BFR250, NESG, structural genomics, PSI-2; HET: SAM;
1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A
3t7s_A* 3t7r_A* 3t7t_A*
Length = 267
Score = 25.2 bits (55), Expect = 8.7
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 14 YHHSFLDKEFWYKDAQEGIRRRLALFGESHLPEDRAKNIILMVGDGMGLSTLTASRILKG 73
F + E + E + L+ + K++I +G G G T+ + + G
Sbjct: 16 ICDFFSNMERQGPGSPEVTLKALSF-----IDNLTEKSLIADIGCGTGGQTMVLAGHVTG 70
Query: 74 QRMGI 78
Q G+
Sbjct: 71 QVTGL 75
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory
domains, kinase transferase, PSI-2, protein structure
initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Length = 446
Score = 25.3 bits (56), Expect = 9.2
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 5 SYVVTLTSQYHHSFLDKEFWYKDAQEGIRRRLALF---GESHLPEDRAKNIILMVGDGMG 61
S+ + S + ++ + I + + + A ++ VG GM
Sbjct: 328 SFEHMPSGVDSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIEIHPNMA--LVATVGTGMA 385
Query: 62 LSTLTASRILK 72
+ A++I
Sbjct: 386 KTKGIANKIFT 396
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.421
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,413,045
Number of extensions: 137568
Number of successful extensions: 320
Number of sequences better than 10.0: 1
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 34
Length of query: 146
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 61
Effective length of database: 4,328,508
Effective search space: 264038988
Effective search space used: 264038988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)