RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16427
(146 letters)
>d1zeda1 c.76.1.1 (A:1-479) Alkaline phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 479
Score = 99.4 bits (247), Expect = 6e-26
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 20 DKEFWYKDAQEGIRRRLALFGESHLPEDRAKNIILMVGDGMGLSTLTASRILKGQRMGIH 79
+ +FW ++A E + L + AKN+I+ +GDGMG+ST+TA+RILKGQ+
Sbjct: 8 NPDFWNREAAEALGAAKKL----QPAQTAAKNLIIFLGDGMGVSTVTAARILKGQKKDKL 63
Query: 80 GEEYHLAWDKFPAVALAKQFSSGGII 105
G E LA D+FP VAL+K ++ +
Sbjct: 64 GPEIPLAMDRFPYVALSKTYNVDKHV 89
>d1k7ha_ c.76.1.1 (A:) Alkaline phosphatase {Northern shrimp
(Pandalus borealis) [TaxId: 6703]}
Length = 476
Score = 95.2 bits (236), Expect = 2e-24
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 5/86 (5%)
Query: 20 DKEFWYKDAQEGIRRRLALFGESHLPEDRAKNIILMVGDGMGLSTLTASRILKGQRMGIH 79
DK +W KDAQ+ + ++L + L E +AKN+I +GDGM LST+TA+RI KG G
Sbjct: 3 DKAYWNKDAQDALDKQLGI----KLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTGKF 58
Query: 80 GEEYHLAWDKFPAVALAKQFSSGGII 105
E ++W++F AL+K +++ +
Sbjct: 59 ERE-KISWEEFDFAALSKTYNTDKQV 83
>d1y6va1 c.76.1.1 (A:1-449) Alkaline phosphatase {Escherichia coli
[TaxId: 562]}
Length = 449
Score = 68.2 bits (166), Expect = 5e-15
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 17 SFLDKEFWYKDAQEGIRRRLALFGESHLPED----RAKNIILMVGDGMGLSTLTASRILK 72
++ G RRL + L + AKNIIL++GDGMG S +TA+R
Sbjct: 6 VLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYA 65
Query: 73 GQRMGIH-GEEYHLAWDKFPAVALAKQFSSGGII 105
G G + ++ AL K+ +
Sbjct: 66 EGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYV 99
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 30.8 bits (69), Expect = 0.045
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 11/97 (11%)
Query: 41 ESHLPEDRAKNIILMVG-DGMGLSTLTASRILKGQRMGIHGEEYHLAWDKFPAVALAKQF 99
E+ LP + +N+ +VG G G +T A L + G + VA Q
Sbjct: 1 EARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKG----------RRPLLVAADTQR 50
Query: 100 SSGGIILCQLGQRMGIHGEEYHLAWDKFPAVALAKHY 136
+ L LG+++G+ E +
Sbjct: 51 PAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 87
>d1gcva_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Houndshark (Mustelus
griseus) [TaxId: 89020]}
Length = 140
Score = 26.2 bits (57), Expect = 1.3
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 101 SGGIILCQLGQRMGIHGEEYHLAWDKFPAV---ALAKHY 136
I+ L + + H A DK + L+ Y
Sbjct: 101 LSECIIVTLATHLTEFSPDTHCAVDKLLSAICQELSSRY 139
>d1cg5a_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Cartilaginous fish
akaei (Dasyatis akajei) [TaxId: 31902]}
Length = 141
Score = 25.0 bits (54), Expect = 3.1
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 102 GGIILCQLGQRMGIHGEEYHLAWDKFPAV---ALAKHY 136
I+ L + H A DKF + L+ Y
Sbjct: 103 ADCIVVTLAVNLQAFTPVTHCAVDKFLELVAYELSSCY 140
>d1vkra_ c.44.2.1 (A:) PTS system mannitol-specific EIICBA
component {Escherichia coli [TaxId: 562]}
Length = 97
Score = 23.9 bits (52), Expect = 5.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 50 KNIILMVGDGMGLSTLTASRILK 72
+ II+ GMG S + A + K
Sbjct: 4 RKIIVACDAGMGSSAMGAGVLRK 26
>d1outb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Trout (Oncorhynchus
mykiss) [TaxId: 8022]}
Length = 146
Score = 23.8 bits (51), Expect = 7.9
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 102 GGIILCQLGQRMGIH-GEEYHLAWDKFPAV---ALAKHY 136
++ + + G E W KF V A+ Y
Sbjct: 107 ADVLTIVIAAKFGASFTPEIQATWQKFMKVVVAAMGSRY 145
>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase
FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 165
Score = 24.0 bits (51), Expect = 8.7
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 43 HLPEDRAKNIILMVGDGMGLSTLTA---SRILKGQRMGIHGEEYHLAW 87
HLP + I +VG G G++ + R Q G++ L +
Sbjct: 3 HLPRNPQVPCI-LVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVF 49
>d1spga_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Fish (Leiostomus
xanthurus) [TaxId: 59837]}
Length = 143
Score = 23.5 bits (50), Expect = 9.0
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 102 GGIILCQLGQRMGIH-GEEYHLAWDKFPAV---ALAKHY 136
I+ + E HL+ DKF A AL++ Y
Sbjct: 104 AHNIILVISMYFPGDFTPEVHLSVDKFLACLALALSEKY 142
>g1dy9.1 b.47.1.3 (A:,C:) NS3 protease {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 187
Score = 23.9 bits (52), Expect = 9.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 100 SSGGIILCQLGQRMGI 115
SSGG +LC G +GI
Sbjct: 138 SSGGPLLCPSGHVVGI 153
>d1v4wb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Bluefin tuna (Thunnus
thynnus) [TaxId: 8237]}
Length = 146
Score = 23.5 bits (50), Expect = 9.8
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 102 GGIILCQLGQRMGIH-GEEYHLAWDKFPAV---ALAKHY 136
G + + +G E A+ KF AV AL + Y
Sbjct: 107 GDCLTVVIAANLGDAFTVETQCAFQKFLAVVVFALGRKY 145
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.421
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 573,376
Number of extensions: 25040
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 44
Length of query: 146
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,350,386
Effective search space: 93176634
Effective search space used: 93176634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (22.7 bits)