BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1643
(962 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q16RX1|MED21_AEDAE Mediator of RNA polymerase II transcription subunit 21 OS=Aedes
aegypti GN=MED21 PE=3 SV=1
Length = 141
Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/119 (69%), Positives = 107/119 (89%), Gaps = 1/119 (0%)
Query: 840 EQADNFCNSVGILQQTAIPSKFSGFDRGGSQTPQQQTQQEDYAHLFATLISRCARDIDAL 899
+QA++FCNS+GILQQ ++PSKF GF+R GSQTPQQ QQEDYA LF+TLISRCA+DID L
Sbjct: 14 QQAEHFCNSIGILQQCSVPSKFPGFERTGSQTPQQ-NQQEDYAQLFSTLISRCAKDIDTL 72
Query: 900 IESLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAALTDIAQSQLE 958
IESLP+E+S+ ELQ+ +L++LE +NQ +AE+LE+ VR+GELLLE+IQAAL+DIAQSQL+
Sbjct: 73 IESLPSEESSIELQVQALKRLEIENQESAEKLEEVVRKGELLLEKIQAALSDIAQSQLD 131
>sp|Q9W5P1|MED21_DROME Mediator of RNA polymerase II transcription subunit 21
OS=Drosophila melanogaster GN=MED21 PE=1 SV=1
Length = 142
Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 72/119 (60%), Positives = 97/119 (81%)
Query: 840 EQADNFCNSVGILQQTAIPSKFSGFDRGGSQTPQQQTQQEDYAHLFATLISRCARDIDAL 899
+QA++FCN++G++QQT++PSKF F+R G QTP QEDYA LFA LI+RCA+DID L
Sbjct: 14 QQAEHFCNAIGVIQQTSLPSKFVNFERIGPQTPIPCPPQEDYAQLFAQLIARCAKDIDTL 73
Query: 900 IESLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAALTDIAQSQLE 958
IESLPNEDS+ ELQ +SL++LE +NQG A LE+ V++GELLLE++Q +L IAQ+QL+
Sbjct: 74 IESLPNEDSSIELQNSSLKRLEIENQGTARDLEEVVQKGELLLEKMQYSLECIAQAQLD 132
>sp|Q7PTL0|MED21_ANOGA Mediator of RNA polymerase II transcription subunit 21 OS=Anopheles
gambiae GN=MED21 PE=3 SV=5
Length = 154
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/136 (58%), Positives = 105/136 (77%), Gaps = 17/136 (12%)
Query: 840 EQADNFCNSVGILQQTAIPSKFSGFDRGGSQTPQQQTQQEDYAH---------------- 883
+QA++FCNS+GILQQ ++PSKF+GF+R GSQTPQQQ Q+
Sbjct: 14 QQAEHFCNSIGILQQCSVPSKFAGFERTGSQTPQQQVHQQQQLPQQQQQQQQPQQQEDFP 73
Query: 884 -LFATLISRCARDIDALIESLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLL 942
LF+TLISRCA+DID LIESLP+E+S+ ELQ+ SL++LE +N+ +AE+LE+ VR+GELLL
Sbjct: 74 QLFSTLISRCAKDIDTLIESLPSEESSIELQVQSLQRLEAENKESAEKLEEIVRKGELLL 133
Query: 943 EQIQAALTDIAQSQLE 958
E+IQAAL+DIAQSQL+
Sbjct: 134 EKIQAALSDIAQSQLD 149
>sp|Q7ZTI5|MED21_DANRE Mediator of RNA polymerase II transcription subunit 21 OS=Danio
rerio GN=med21 PE=2 SV=1
Length = 145
Score = 129 bits (325), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/118 (56%), Positives = 86/118 (72%), Gaps = 1/118 (0%)
Query: 842 ADNFCNSVGILQQTAIPSKFSGFDRGGSQTPQQQTQQEDYAHLFATLISRCARDIDALIE 901
AD FCN++G+LQQ A P+ FS ++ Q E+YA LFA LI+R A+D+D LI+
Sbjct: 16 ADQFCNAIGVLQQCAPPASFSNIQTAINKD-QPSNPTEEYAQLFAALIARTAKDVDVLID 74
Query: 902 SLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAALTDIAQSQLET 959
SLP+E+ST LQ ASLR+LE++NQ AA RLE+ V RG+ LLE+IQ AL DIAQSQL T
Sbjct: 75 SLPSEESTAALQAASLRQLEEENQEAAARLEEVVYRGDALLEKIQTALADIAQSQLRT 132
>sp|Q9CQ39|MED21_MOUSE Mediator of RNA polymerase II transcription subunit 21 OS=Mus
musculus GN=Med21 PE=1 SV=1
Length = 144
Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/121 (55%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 842 ADNFCNSVGILQQTAIPSKFSGFDRGGSQTPQQQTQQEDYAHLFATLISRCARDIDALIE 901
AD FCN++G+LQQ P+ FS ++ Q E+YA LFA LI+R A+DID LI+
Sbjct: 16 ADQFCNAIGVLQQCGPPASFSNIQTAINKD-QPANPTEEYAQLFAALIARTAKDIDVLID 74
Query: 902 SLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAALTDIAQSQLETNG 961
SLP+E+ST LQ ASL KLE++N AA LED V RG++LLE+IQ+AL DIAQSQL+T
Sbjct: 75 SLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSALADIAQSQLKTRS 134
Query: 962 V 962
V
Sbjct: 135 V 135
>sp|Q2TBU8|MED21_BOVIN Mediator of RNA polymerase II transcription subunit 21 OS=Bos
taurus GN=MED21 PE=2 SV=1
Length = 144
Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 85/118 (72%), Gaps = 1/118 (0%)
Query: 842 ADNFCNSVGILQQTAIPSKFSGFDRGGSQTPQQQTQQEDYAHLFATLISRCARDIDALIE 901
AD FCN++G+LQQ P+ FS ++ Q E+YA LFA LI+R A+DID LI+
Sbjct: 16 ADQFCNAIGVLQQCGPPASFSNIQTAINKD-QPANPTEEYAQLFAALIARTAKDIDVLID 74
Query: 902 SLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAALTDIAQSQLET 959
SLP+E+ST LQ ASL KLE++N AA LED V RG++LLE+IQ+AL DIAQSQL+T
Sbjct: 75 SLPSEESTAALQAASLYKLEEENHEAATSLEDVVYRGDMLLEKIQSALADIAQSQLKT 132
>sp|Q5RE46|MED21_PONAB Mediator of RNA polymerase II transcription subunit 21 OS=Pongo
abelii GN=MED21 PE=2 SV=1
Length = 144
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 84/118 (71%), Gaps = 1/118 (0%)
Query: 842 ADNFCNSVGILQQTAIPSKFSGFDRGGSQTPQQQTQQEDYAHLFATLISRCARDIDALIE 901
AD FCN++G+LQQ P+ FS + Q E+YA LFA LI+R A+DID LI+
Sbjct: 16 ADQFCNAIGVLQQCGPPASFSNI-QTAINKDQPANSTEEYAQLFAALIARTAKDIDVLID 74
Query: 902 SLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAALTDIAQSQLET 959
SLP+E+ST LQ ASL KLE++N AA LED V RG++LLE+IQ+AL DIAQSQL+T
Sbjct: 75 SLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSALADIAQSQLKT 132
>sp|Q4R6N3|MED21_MACFA Mediator of RNA polymerase II transcription subunit 21 OS=Macaca
fascicularis GN=MED21 PE=2 SV=1
Length = 144
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 85/118 (72%), Gaps = 1/118 (0%)
Query: 842 ADNFCNSVGILQQTAIPSKFSGFDRGGSQTPQQQTQQEDYAHLFATLISRCARDIDALIE 901
AD FCN++G+LQQ P+ FS ++ Q E+YA LFA LI+R A+DID LI+
Sbjct: 16 ADQFCNAIGVLQQCGPPASFSNIQTAINKD-QPANPTEEYAQLFAALIARTAKDIDVLID 74
Query: 902 SLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAALTDIAQSQLET 959
SLP+E+ST LQ ASL KLE++N AA LED V RG++LLE+IQ+AL DIAQSQL+T
Sbjct: 75 SLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSALADIAQSQLKT 132
>sp|Q13503|MED21_HUMAN Mediator of RNA polymerase II transcription subunit 21 OS=Homo
sapiens GN=MED21 PE=1 SV=1
Length = 144
Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 85/118 (72%), Gaps = 1/118 (0%)
Query: 842 ADNFCNSVGILQQTAIPSKFSGFDRGGSQTPQQQTQQEDYAHLFATLISRCARDIDALIE 901
AD FCN++G+LQQ P+ F+ ++ Q E+YA LFA LI+R A+DID LI+
Sbjct: 16 ADQFCNAIGVLQQCGPPASFNNIQTAINKD-QPANPTEEYAQLFAALIARTAKDIDVLID 74
Query: 902 SLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAALTDIAQSQLET 959
SLP+E+ST LQ ASL KLE++N AA LED V RG++LLE+IQ+AL DIAQSQL+T
Sbjct: 75 SLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSALADIAQSQLKT 132
>sp|P08116|PVA_PLAFA Processed variable antigen (Fragment) OS=Plasmodium falciparum PE=2
SV=1
Length = 224
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 35 QAGPSKQNVPANQAGPSKQNVPVNQGGAAKQNIQGSSSKQNVSANQAGPSKQNGPVKQTG 94
+ G SK+ + + G SK+ + G +K+ + SK+ + + G SK+ G K+TG
Sbjct: 1 ETGESKETGESKETGESKETGESKETGESKETGE---SKETGESKETGESKETGESKETG 57
Query: 95 ASKQNGPVKQT--SKETPRSR 113
SK+ G K+T SKET S+
Sbjct: 58 ESKETGESKETGESKETGESK 78
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 35 QAGPSKQNVPANQAGPSKQNVPVNQGGAAKQNIQGSSSKQNVSANQAGPSKQNGPVKQTG 94
+ G SK+ + + G SK+ + G +K+ + SK+ + + G SK+ G K+TG
Sbjct: 7 ETGESKETGESKETGESKETGESKETGESKETGE---SKETGESKETGESKETGESKETG 63
Query: 95 ASKQNGPVKQT--SKETPRSR 113
SK+ G K+T SKET S+
Sbjct: 64 ESKETGESKETGESKETGESK 84
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 35 QAGPSKQNVPANQAGPSKQNVPVNQGGAAKQNIQGSSSKQNVSANQAGPSKQNGPVKQTG 94
+ G SK+ + + G SK+ + G +K+ + SK+ + + G SK+ G K+TG
Sbjct: 13 ETGESKETGESKETGESKETGESKETGESKETGE---SKETGESKETGESKETGESKETG 69
Query: 95 ASKQNGPVKQT--SKETPRSR 113
SK+ G K+T SKET S+
Sbjct: 70 ESKETGESKETGESKETGESK 90
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 35 QAGPSKQNVPANQAGPSKQNVPVNQGGAAKQNIQGSSSKQNVSANQAGPSKQNGPVKQTG 94
+ G SK+ + + G SK+ + G +K+ + SK+ + + G SK+ G K+TG
Sbjct: 19 ETGESKETGESKETGESKETGESKETGESKETGE---SKETGESKETGESKETGESKETG 75
Query: 95 ASKQNGPVKQT--SKETPRSR 113
SK+ G K+T SKET S+
Sbjct: 76 ESKETGESKETGESKETGESK 96
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 35 QAGPSKQNVPANQAGPSKQNVPVNQGGAAKQNIQGSSSKQNVSANQAGPSKQNGPVKQTG 94
+ G SK+ + + G SK+ + G +K+ + SK+ + + G SK+ G K+TG
Sbjct: 25 ETGESKETGESKETGESKETGESKETGESKETGE---SKETGESKETGESKETGESKETG 81
Query: 95 ASKQNGPVKQT--SKETPRSR 113
SK+ G K+T SKET S+
Sbjct: 82 ESKETGESKETGESKETGESK 102
Score = 40.8 bits (94), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 35 QAGPSKQNVPANQAGPSKQNVPVNQGGAAKQNIQGSSSKQNVSANQAGPSKQNGPVKQTG 94
+ G SK+ + + G SK+ + G +K+ + SK+ + + G SK+ G K+TG
Sbjct: 31 ETGESKETGESKETGESKETGESKETGESKETGE---SKETGESKETGESKETGESKETG 87
Query: 95 ASKQNGPVKQT--SKET 109
SK+ G K+T SKET
Sbjct: 88 ESKETGESKETGESKET 104
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 72 SKQNVSANQAGPSKQNGPVKQTGASKQNGPVKQT--------SKETPRSRRKPSSLPLQK 123
SK+ + + G SK+ G K+TG SK+ G K+T SKET S+ S +
Sbjct: 5 SKETGESKETGESKETGESKETGESKETGESKETGESKETGESKETGESKETGESKETGE 64
Query: 124 EVEAIRLRRRVKMKPLKNTQCSIHLKHLPAPKSTHAPAEFRL 165
E + + K ++ + K K T E R+
Sbjct: 65 SKETGESKETGESKETGESKETGESKETGESKETGESKETRI 106
>sp|Q61BU1|MED21_CAEBR Mediator of RNA polymerase II transcription subunit 21
OS=Caenorhabditis briggsae GN=mdt-21 PE=3 SV=2
Length = 130
Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 69/133 (51%), Gaps = 15/133 (11%)
Query: 830 TPIQQLLSSAEQADNFCNSVGILQQTAIPSKFSGFDRGGSQTPQQQTQQEDYAHLFATLI 889
T +Q +++ E A N++G+LQ TA P +F Q ++E +FA I
Sbjct: 6 TQLQDMIN--EMASLMTNAIGVLQATAPPCEFDAIS--------QDHEEEPNCAIFAASI 55
Query: 890 SRCARDIDALIESLPNEDSTTELQLASLRKLEQDNQGAAER---LEDTVRRGELLLEQIQ 946
++ A++I+ LI+S P E E ++ +K+ Q++ E+ L++ V L+ +Q
Sbjct: 56 AKSAKNIEILIDSFPIEAGNMEDEVE--QKMIQNDAVQREKVGELKELVGESTQLVSAVQ 113
Query: 947 AALTDIAQSQLET 959
L++I++ Q+ +
Sbjct: 114 KKLSEISRVQMSS 126
>sp|Q6BER6|MED21_CAEEL Mediator of RNA polymerase II transcription subunit 21
OS=Caenorhabditis elegans GN=mdt-21 PE=1 SV=1
Length = 130
Score = 42.0 bits (97), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 830 TPIQQLLSSAEQADNFCNSVGILQQTAIPSKFSGFDRGGSQTPQQQTQQEDYAHLFATLI 889
T +Q +++ E A N++G+LQ TA P +F Q+ + E +FA I
Sbjct: 6 TQLQDMIN--EMAGLMTNAIGVLQATAPPCEFGAIS--------QELEDEPNCAIFAAGI 55
Query: 890 SRCARDIDALIESLPNEDSTTELQLAS-LRKLEQDNQGAAERLEDTVRRGELLLEQIQAA 948
++ A++I+ LI+S P E E ++ + K ++ + L V L+ +Q
Sbjct: 56 AKAAKNIEILIDSFPIEAGNQEAEVEEKMIKNDEKQREKVNELVGLVGDSNRLVGVVQKK 115
Query: 949 LTDIAQSQLET 959
L +I+++Q+ +
Sbjct: 116 LAEISKTQMSS 126
>sp|P19262|ODO2_YEAST Dihydrolipoyllysine-residue succinyltransferase component of
2-oxoglutarate dehydrogenase complex, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=KGD2 PE=1 SV=2
Length = 463
Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 19/130 (14%)
Query: 23 SQCSGGSAKPANQAGPSKQNVPANQAGPSKQNVPVNQGGAAKQNIQGSSSKQNVSANQAG 82
+Q G A PA +G SK P QA PS QG AA++N SS++ S +A
Sbjct: 145 AQVEPGEA-PAEGSGESKPE-PTEQAEPS-------QGVAAREN----SSEETASKKEAA 191
Query: 83 PSKQNGPVKQ-TGASKQNGPVKQTSK--ETPRSRRKPSSLP-LQKEVEAIRLRRRV--KM 136
P K+ P K+ T K + P K SK E P + + P + V+ R+R R+ ++
Sbjct: 192 PKKEAAPKKEVTEPKKADQPKKTVSKAQEPPVASNSFTPFPRTETRVKMNRMRLRIAERL 251
Query: 137 KPLKNTQCSI 146
K +NT S+
Sbjct: 252 KESQNTAASL 261
>sp|Q9PU36|PCLO_CHICK Protein piccolo (Fragment) OS=Gallus gallus GN=PCLO PE=2 SV=1
Length = 5120
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 67/163 (41%), Gaps = 29/163 (17%)
Query: 9 GKNTNNSAPGAASTSQCSGG----SAKPANQAGPSKQNVPANQAGPSKQNVPVNQGGAAK 64
K ++ + P + Q SG S +PA Q GP K + A QAGP KQ Q G+ K
Sbjct: 225 AKTSSQAPPPTKPSLQQSGSVKQPSQQPARQGGPVKPS--AQQAGPPKQ-----QPGSEK 277
Query: 65 QNIQGSSSKQNVSANQAGPSKQ-------NGPVKQTGASKQNGPVKQTSKETPRSRRKPS 117
+A Q GP+KQ P++QTG KQ P +K + ++
Sbjct: 278 -----------PTAQQTGPAKQPPQPGPGKTPLQQTGPVKQVPPQAGPTKPSSQTAGAAK 326
Query: 118 SLPLQKEVEAIRLRRRVKMKPLKNTQCSIHLKHLPAPKSTHAP 160
SL Q + ++ KPL+ Q S PK T P
Sbjct: 327 SLAQQPGLTKPPGQQPGPEKPLQQKQASTTQPVESTPKKTFCP 369
>sp|Q9ZDX9|DNAK_RICPR Chaperone protein DnaK OS=Rickettsia prowazekii (strain Madrid E)
GN=dnaK PE=3 SV=1
Length = 627
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 22/150 (14%)
Query: 663 GFKDAKVRPIVRLKTHNCDDNLEGLDDLVDELATVKLEDAPEAEKEEESGKDSADSIIKN 722
G DA++ +V+ HN D++ + KE K++ADS++ +
Sbjct: 500 GLSDAEIEQMVKDAEHNADED--------------------KKRKELIETKNAADSLVYS 539
Query: 723 YEKIWRYYKRQIPKARGITIHKLLSWSIKQMWHPDVYVVICSQENLSLYKTNVIFAEYME 782
EK R Y ++ T+ + L+ + D ++ NL+ N+ E M
Sbjct: 540 TEKTLREYGDKLSSEEKGTVEEALTSLKAALESEDASLIKEKTGNLT--AANMKIGEAMY 597
Query: 783 KTKRKNTNQENLSLYKTNVIFAEYMEKTKR 812
KT+ +N + E ++ V+ A++ + K+
Sbjct: 598 KTQTENQHSEANTVNNEKVVDADFQDVDKK 627
>sp|P20929|NEBU_HUMAN Nebulin OS=Homo sapiens GN=NEB PE=1 SV=4
Length = 6669
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 19/92 (20%)
Query: 756 PDVYVVICSQENLS--LYKTNVIFAEY------MEKTKRKNTNQENLS--LYKTNV---- 801
P++ V +QEN+S LYK NV A M++ KR NQEN+S LYK N+
Sbjct: 6292 PEMERVKHNQENISSVLYKENVGKATATPVTPEMQRVKR---NQENISSVLYKENLGKAT 6348
Query: 802 --IFAEYMEKTKRKNTNSSHLKYMPKLKAKTP 831
F ME+ KR N S + Y ++ TP
Sbjct: 6349 PTPFTPEMERVKRNQENFSSVLYKENMRKATP 6380
>sp|Q3T058|EI2BD_BOVIN Translation initiation factor eIF-2B subunit delta OS=Bos taurus
GN=EIF2B4 PE=2 SV=1
Length = 524
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 47 QAGPSKQNV-PVNQGGAAKQNIQGSSSKQNVSANQAGPSKQNGPVKQTGASKQNGPVKQ- 104
Q GP+K P +Q G AK+ + SK + A + + +KQ Q GP Q
Sbjct: 70 QVGPAKHLAGPDSQLGTAKEKVPAGRSKAELRAERRAKQEAERAMKQARKGDQGGPPPQA 129
Query: 105 ---TSKETPRSRRKPSSLPLQKEVEAIRLRRRVKMKP 138
T+ ETP ++ LP +V+ L RR+ KP
Sbjct: 130 CPSTAGETPSGVKR---LPEHSQVDDPTLLRRLVKKP 163
>sp|P10155|RO60_HUMAN 60 kDa SS-A/Ro ribonucleoprotein OS=Homo sapiens GN=TROVE2 PE=1
SV=2
Length = 538
Score = 34.3 bits (77), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 33/214 (15%)
Query: 333 AVRKQLQKWYMGKESDQLVVLVAKCSVYQGLSHANVLKLIHFDVFHQSPDKKLALYA--I 390
A+RK + WY K L + V K G SH ++L+L H + + LA+ I
Sbjct: 147 ALRKAIADWYNEKGGMALALAVTKYKQRNGWSHKDLLRLSHL----KPSSEGLAIVTKYI 202
Query: 391 AFGFAYVSHRLISGKFLA--TPRVPPFVTSDDCFDKASDKVKTIVKDVAVVRCNTSHQKV 448
G+ V H L K L+ T ++ ++ +A +KVK ++ V+
Sbjct: 203 TKGWKEV-HELYKEKALSVETEKLLKYL-------EAVEKVKRTRDELEVIH-------- 246
Query: 449 VAAAVKTHSLGIESVCPKFAKSFKVNTACLEGMTQRGLLQSMHRLRKDNVLSSEDHAIVD 508
++ H L E + KS +V A L+ M LL+++ ++ ++VL + +
Sbjct: 247 ---LIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSEV-- 301
Query: 509 ESTTCGTYVKQLGASPVTEPPLHPAEVLAAYAEY 542
S C K + + +HP +L A Y
Sbjct: 302 -SLVCE---KLCNEKLLKKARIHPFHILIALETY 331
>sp|Q8K0H5|TAF10_MOUSE Transcription initiation factor TFIID subunit 10 OS=Mus musculus
GN=Taf10 PE=1 SV=1
Length = 218
Score = 33.9 bits (76), Expect = 7.4, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 15 SAPGAASTSQCSGGSAKPANQAGPSKQNVPANQAGP--SKQNVPVNQGGAAKQNIQGSSS 72
SAP A TS + A PA AG V GP ++ P + G A G++
Sbjct: 28 SAPAALPTSTAAESKASPAGTAGGPVAGVATAGTGPVAARAGEPAERRGPASVAAGGAAP 87
Query: 73 KQNVSAN--QAGPSKQNGPVKQTGAS 96
+ +N A PS NG VK +S
Sbjct: 88 PEGAMSNGVYALPSAANGEVKPVVSS 113
>sp|Q03484|CEBPD_RAT CCAAT/enhancer-binding protein delta OS=Rattus norvegicus GN=Cebpd
PE=2 SV=1
Length = 268
Score = 33.5 bits (75), Expect = 8.8, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 11 NTNNSAPGAASTSQCSGGSAKPANQA----GPSKQNVPANQAGPSKQNVPVNQGGAAKQN 66
N+N+ A GA S GG +P GP K+ +P A+
Sbjct: 87 NSNHKAAGAGSLELLQGGPTRPPGVGSIARGPLKREPDWGDGDAPGSLLPAQVAVCAQTV 146
Query: 67 IQGSSSKQNVSA-------NQAGPSKQNGPVKQTGASKQNGPVKQTSKETPRSRRKPSSL 119
+ +++ Q GPS GPV++ GA K+ GP + + + R RR+ +++
Sbjct: 147 VSLAAAAQPTPPTSPEPPRGSPGPSLAPGPVREKGAGKR-GPDRGSPEY--RQRRERNNI 203
Query: 120 PLQKEVEAIRLRRRVKMK 137
++K + + RR +M+
Sbjct: 204 AVRKSRDKAK-RRNQEMQ 220
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 350,992,585
Number of Sequences: 539616
Number of extensions: 14978273
Number of successful extensions: 52571
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 212
Number of HSP's that attempted gapping in prelim test: 51426
Number of HSP's gapped (non-prelim): 1058
length of query: 962
length of database: 191,569,459
effective HSP length: 127
effective length of query: 835
effective length of database: 123,038,227
effective search space: 102736919545
effective search space used: 102736919545
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)