Query psy1643
Match_columns 962
No_of_seqs 116 out of 148
Neff 1.7
Searched_HMMs 29240
Date Fri Aug 16 21:06:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yke_B RNA polymerase II holoe 100.0 9E-39 3.1E-43 299.0 9.4 135 825-961 1-138 (151)
2 1ykh_B RNA polymerase II holoe 100.0 1.1E-37 3.9E-42 285.1 11.3 128 825-954 1-131 (132)
3 2nvo_A RO sixty-related protei 97.9 1.7E-05 5.9E-10 84.5 7.9 350 244-695 82-434 (535)
4 1yvr_A RO autoantigen, 60-kDa 97.4 0.00018 6.2E-09 76.1 6.3 322 300-695 112-438 (538)
5 1zxa_A CGMP-dependent protein 68.1 6.9 0.00024 33.5 4.9 47 904-950 3-49 (67)
6 3l39_A Putative PHOU-like phos 60.2 1.2E+02 0.0041 29.0 13.9 116 819-955 87-211 (227)
7 2olt_A Hypothetical protein; s 58.7 1.2E+02 0.004 28.3 12.1 112 829-957 86-214 (227)
8 3uun_A Dystrophin; triple heli 52.1 94 0.0032 25.2 9.3 64 879-943 8-71 (119)
9 4i0x_B ESAT-6-like protein MAB 46.6 1.3E+02 0.0045 25.3 9.4 66 880-955 14-89 (103)
10 1ykh_B RNA polymerase II holoe 44.8 79 0.0027 29.1 8.1 65 879-954 49-124 (132)
11 1yke_B RNA polymerase II holoe 41.5 76 0.0026 30.0 7.7 65 879-954 49-124 (151)
12 3uul_A Utrophin; spectrin repe 38.5 1.4E+02 0.0048 24.3 8.0 33 911-943 39-71 (118)
13 1nlw_A MAD protein, MAX dimeri 37.4 68 0.0023 27.3 6.1 53 895-947 19-79 (80)
14 3a2a_A Voltage-gated hydrogen 35.4 86 0.0029 26.6 6.1 45 907-951 6-50 (58)
15 3zbh_A ESXA; unknown function, 34.8 1.7E+02 0.0059 23.3 10.2 24 880-903 12-35 (99)
16 3vmx_A Voltage-gated hydrogen 34.5 1.6E+02 0.0055 24.2 7.4 42 910-951 2-43 (48)
17 3mq7_A Bone marrow stromal ant 33.8 74 0.0025 30.0 6.1 60 891-954 50-110 (121)
18 3nmd_A CGMP dependent protein 31.4 1.3E+02 0.0044 26.2 6.8 6 903-908 15-20 (72)
19 4ioe_A Secreted protein ESXB; 31.1 2E+02 0.0068 22.9 9.7 26 930-955 60-85 (93)
20 3gwk_C SAG1039, putative uncha 30.5 2.2E+02 0.0074 23.1 9.7 24 880-903 11-34 (98)
21 3edv_A Spectrin beta chain, br 29.6 1.8E+02 0.0062 27.6 8.3 65 890-954 232-305 (323)
22 2l3l_A Tubulin-specific chaper 28.6 2.4E+02 0.0082 25.4 8.4 46 879-927 30-77 (111)
23 3ni0_A Bone marrow stromal ant 27.3 37 0.0013 31.1 2.9 50 890-939 42-91 (99)
24 3gp4_A Transcriptional regulat 27.0 96 0.0033 28.1 5.6 59 894-952 63-121 (142)
25 4etp_A Kinesin-like protein KA 23.8 1.5E+02 0.0052 31.1 7.2 35 914-948 23-57 (403)
26 3lay_A Zinc resistance-associa 23.3 2.3E+02 0.0079 27.3 7.8 17 911-927 70-86 (175)
27 1nkp_B MAX protein, MYC proto- 23.1 2.1E+02 0.0071 23.8 6.5 52 895-946 20-78 (83)
28 3oja_B Anopheles plasmodium-re 22.8 5.9E+02 0.02 26.4 11.3 36 913-948 535-570 (597)
29 3g67_A Methyl-accepting chemot 21.8 2.1E+02 0.0072 28.0 7.3 24 880-903 119-142 (213)
30 3cvf_A Homer-3, homer protein 21.8 2.6E+02 0.009 24.5 7.1 41 915-955 27-67 (79)
31 4afl_A P29ING4, inhibitor of g 20.7 4E+02 0.014 22.8 10.8 59 892-952 41-99 (104)
32 2vs0_A Virulence factor ESXA; 20.5 3.2E+02 0.011 21.6 9.6 66 880-955 9-82 (97)
33 1nkp_A C-MYC, MYC proto-oncoge 20.5 2E+02 0.0068 24.7 6.0 34 915-948 52-85 (88)
34 4h22_A Leucine-rich repeat fli 20.3 3.4E+02 0.012 25.0 7.7 47 895-948 31-77 (103)
No 1
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=100.00 E-value=9e-39 Score=299.01 Aligned_cols=135 Identities=18% Similarity=0.256 Sum_probs=114.2
Q ss_pred CCCcchHHHhhhCHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC-CC--CCCCCcchHHHHHHHHHHHHHHhhHHHHHH
Q psy1643 825 KLKAKTPIQQLLSSAEQADNFCNSVGILQQTAIPSKFSGFDRGGS-QT--PQQQTQQEDYAHLFATLISRCARDIDALIE 901 (962)
Q Consensus 825 mADRLTQLQDCLD~aQLAEQFcNSIGYLQRdAPPSsFsPndKIsS-pd--PqQqqp~EDnpQEFATDIIrKAKQIE~LID 901 (962)
||||||||||||| |||++||||||||+++|||+.|+|++...+ +. |+++..+...+++||+|||.|+||||+|||
T Consensus 1 MaDrLTQLQd~ld--qLa~~f~nsig~Lq~~app~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dli~kakqIe~LId 78 (151)
T 1yke_B 1 MTDRLTQLQICLD--QMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLID 78 (151)
T ss_dssp --CCHHHHHHHHH--HHHHHTTTTHHHHHHTTGGGGCCC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHH--HHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999 999999999999999999999998776321 11 122245677899999999999999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q psy1643 902 SLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAALTDIAQSQLETNG 961 (962)
Q Consensus 902 SLPGIDSSEEEQLERIRELEEENKEAEQELQEAVKEAEELLEQVQEALrdIAQSQLnTRp 961 (962)
||||+++||++|++||++|++||+++++||+++|+++|.+|++|+++|++||+++|++|+
T Consensus 79 sLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~~~l~~r~ 138 (151)
T 1yke_B 79 SLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDGIANSKK 138 (151)
T ss_dssp HCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999985
No 2
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=100.00 E-value=1.1e-37 Score=285.09 Aligned_cols=128 Identities=18% Similarity=0.271 Sum_probs=108.3
Q ss_pred CCCcchHHHhhhCHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC-CC--CCCCCcchHHHHHHHHHHHHHHhhHHHHHH
Q psy1643 825 KLKAKTPIQQLLSSAEQADNFCNSVGILQQTAIPSKFSGFDRGGS-QT--PQQQTQQEDYAHLFATLISRCARDIDALIE 901 (962)
Q Consensus 825 mADRLTQLQDCLD~aQLAEQFcNSIGYLQRdAPPSsFsPndKIsS-pd--PqQqqp~EDnpQEFATDIIrKAKQIE~LID 901 (962)
||||||||||||| |||++||||||||+++|||+.|+|++...+ +. ++++..+...+++||+|||.|+||||+|||
T Consensus 1 MaDrlTQLQd~ld--qla~~f~nsig~Lq~~a~p~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dli~k~kqIe~LId 78 (132)
T 1ykh_B 1 MTDRMTQLQICLD--QMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLID 78 (132)
T ss_dssp -CHHHHHHHHHHH--HHHHHHHHHHHHHHHSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHH--HHHHHHHHHHHHHhcCCCcccCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999 999999999999999999999998776422 11 122345677899999999999999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 902 SLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAALTDIAQ 954 (962)
Q Consensus 902 SLPGIDSSEEEQLERIRELEEENKEAEQELQEAVKEAEELLEQVQEALrdIAQ 954 (962)
||||+++||++|++||++|++||+++++||+++|+++|.+|++|+++|+.|++
T Consensus 79 sLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i~~ 131 (132)
T 1ykh_B 79 SLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDFVD 131 (132)
T ss_dssp HSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999876
No 3
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=97.89 E-value=1.7e-05 Score=84.46 Aligned_cols=350 Identities=19% Similarity=0.260 Sum_probs=208.4
Q ss_pred HHHhhhe-eeeccCCCceeEehhhHHHHHHHHHHHhhcCCCCCCCcceeEeeehhhhhhhhhhccccCchhHHHHHHHHh
Q psy1643 244 YLIKCLI-VKVLDNSNPLLINYDIVLYVLAKCLQLVQQDPKAKLPSTTIIEFRTKVLELAVDRVAGQNSERFLMFVLYML 322 (962)
Q Consensus 244 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (962)
++.+|++ +- ..-..+.-+-.+++||-|-.. -++.+ .|.. .--++.+|. ++..-++.|+-|+-
T Consensus 82 ~~~~~~~~~~----r~~~~~r~~~~l~~lal~~~~--~~~~~---------~r~~-~~~~~~~vv-~~~~~l~~f~~~~~ 144 (535)
T 2nvo_A 82 LALRVTLDVV----RGQRAPKADPALLVLALIAKT--APNAA---------DRKA-AWDALPEVA-RTGTMLLHFLAFAD 144 (535)
T ss_dssp HHHHHHHHHH----HHTCCSCSHHHHHHHHHHHHH--CSSHH---------HHHH-HHHHHHHHC-CSHHHHHHHHHHHT
T ss_pred HHHHHHHHHH----hcCCCCCCchHHHHHHHHhcC--cchhh---------HHHH-HHHHHHHHH-CCcchHHHHHHHHH
Confidence 4566665 31 223445566677777766532 11111 0111 224566665 45666788999987
Q ss_pred cCCCCCCCchHHHHHHHHHhcccCCCcEEEEEEeecccccccccchheeeeeeccccCCccchhHHHhhhhhhhhhhhhc
Q psy1643 323 NFSPKSLRPDAVRKQLQKWYMGKESDQLVVLVAKCSVYQGLSHANVLKLIHFDVFHQSPDKKLALYAIAFGFAYVSHRLI 402 (962)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (962)
.+.+ -+-++|+.+++||-.+..+.|.-.++|+....|.+|.-|+++.|..- .+++ ..+|+ .|++.
T Consensus 145 ~~~~---~gr~lr~av~~wy~~~~~~~la~ql~ky~~~~~~~~~D~lrl~Hpkp--~~~~-~~~l~------~~i~~--- 209 (535)
T 2nvo_A 145 ALGG---WGRLTRRGVANVYETADVDKLALWAVKYKARDGWSQADALRKAHPKT--DDAA-RNAVL------KFMVD--- 209 (535)
T ss_dssp TTCC---CCHHHHHHHHHHHHHSCHHHHHHHHHHCSEETTEEHHHHHHHHCCCC--SSHH-HHHHH------HHHHH---
T ss_pred Hhcc---cchHHHHHHHHHHhcCChHHHHHHHHHhcccCCCcHHHHHHhcCCCC--CCHH-HHHHH------HHHHc---
Confidence 7643 47799999999999999988888889999999999999999998631 1222 22332 24432
Q ss_pred ccccccCCCCCCcccCcchhhhcccchhhhcceeeEEEecCchhHHHHHhhhccccccccccchhhhhcccchhhhcchh
Q psy1643 403 SGKFLATPRVPPFVTSDDCFDKASDKVKTIVKDVAVVRCNTSHQKVVAAAVKTHSLGIESVCPKFAKSFKVNTACLEGMT 482 (962)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (962)
|. .. -|| +++...++.+.-++-.++ ..-.+..++.|.+-.|.+-..... -++=.+-+..|.
T Consensus 210 -g~-~~---~~~------------~~~~~~l~~~~~~~~~~~-~~~a~~~i~~~~~t~E~~~s~~~~-~~~W~~Li~~mp 270 (535)
T 2nvo_A 210 -GV-LP---KVD------------SPALRVIEGHLKATEAQT-DAAAAALMQEYRLPLEAVPTHVRG-AEVYRAAMQTNG 270 (535)
T ss_dssp -CC-CC---CCC------------TTHHHHHHHHHHHTTCCS-HHHHHHHHHHHTCCGGGSCGGGCC-HHHHHHHHTTCC
T ss_pred -CC-CC---CCH------------HHHHHHHHHHHHHhhcCC-HHHHHHHHHhCCCCHhhcccccCC-HHHHHHHHHCCC
Confidence 32 11 011 122223322222222222 223456788999999988555444 444445678999
Q ss_pred hhhhHHHhhhhccccccCCCCceecccCcccchhhhhcC-CCCCCCCCCChHHHHHHhhhhhhhcccccccccccccCCC
Q psy1643 483 QRGLLQSMHRLRKDNVLSSEDHAIVDESTTCGTYVKQLG-ASPVTEPPLHPAEVLAAYAEYVLAPVTKMASFQKKAVKPP 561 (962)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (962)
-.-+|..+.++-+.+++...|..-+++ ++..|. ...+..--.||-.++++|.+|--
T Consensus 271 ~~AllrNlr~~~~~g~~~~~~~~~~e~------v~~~L~d~~~v~~s~~~Pf~~~~a~r~y~~----------------- 327 (535)
T 2nvo_A 271 LTWLLRNLGNLGRVGVLTPNDSATVQA------VIERLTDPAALKRGRIHPLDALKARLVYAQ----------------- 327 (535)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCHHHHHH------HHHHHTCHHHHHHTTCCHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHHHHcCCCCCCchHHHHH------HHHHhCCHhhHhhcCCCcHHHHHHHHHhhc-----------------
Confidence 999999999999999986665423332 333332 22233345799999999999921
Q ss_pred CCCCCCCccccccccCCCcceeccCCchHHHHHHHHHHHhhcccccccCceeeEEeecCCccccCCCCCCCCC-CCCCch
Q psy1643 562 PSEGGGGDQAQEKSEDETPVLTAKAPEPAIVSALQELYKSSFSNLKTHDSLKISVCLDLQPRFESQPCRDYRP-LSGSHV 640 (962)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 640 (962)
|.+|- +.- .-.|.+.++.+|.+.|..+|.|++.- .+.+-+|+|.-..-...+... ++ +...-+
T Consensus 328 ----G~dd~---r~i-------dW~~~ar~~~al~~a~~~~~~~~~~~-~~~~lv~vDvSgSM~~~~~~~-~~k~~~~e~ 391 (535)
T 2nvo_A 328 ----GQGVR---GKG-------TWLPVPRVVDALEEAFTLAFGNVQPA-NTRHLLALDVSGSMTCGDVAG-VPGLTPNMA 391 (535)
T ss_dssp ----SBCST---TCC-------BCCCCHHHHHHHHHHHHHHGGGCCCC-CSEEEEEECCSGGGGSCCGGG-CTTCCHHHH
T ss_pred ----ccCcc---CCC-------CCcccHHHHHHHHHHHHHHhhcCCCC-CceEEEEEECCccccCCCCCC-CCcccHHHH
Confidence 11221 011 12245788999999999999998764 588999999876543322211 11 222223
Q ss_pred hHHHHHHHHHhhhccccceEEeeccCCcccceeeecccCCCCcccCchhHHhhhh
Q psy1643 641 AVLVLESLLRMVDYKMDNIRLVGFKDAKVRPIVRLKTHNCDDNLEGLDDLVDELA 695 (962)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (962)
|.++.-.++ ..-|++.|+.|.+ .+.++ .+ .-+ .++.+++++|.
T Consensus 392 Aa~la~~~~----r~~d~v~lv~Fs~-~~~~~-~~---~~~---~~l~~~l~~l~ 434 (535)
T 2nvo_A 392 AAAMSLIAL----RTEPDALTMGFAE-QFRPL-GI---TPR---DTLESAMQKAQ 434 (535)
T ss_dssp HHHHHHHHH----HHSSEEEEEEEBS-SEEEC-CC---CTT---CCHHHHHHHTC
T ss_pred HHHHHHHHc----CcCCceEEEEECC-cceEc-CC---Ccc---hhHHHHHHHHh
Confidence 333322222 3567999999988 33321 11 111 45667777764
No 4
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=97.36 E-value=0.00018 Score=76.05 Aligned_cols=322 Identities=20% Similarity=0.309 Sum_probs=185.4
Q ss_pred hhhhhhccccCchhHHHHHHHHhcCCCCCC---CchHHHHHHHHHhcccCCCcEEEEEEeecccccccccchheeeeeec
Q psy1643 300 ELAVDRVAGQNSERFLMFVLYMLNFSPKSL---RPDAVRKQLQKWYMGKESDQLVVLVAKCSVYQGLSHANVLKLIHFDV 376 (962)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (962)
.-++.+|. ++..-++.|+-|+-.+.-... =+-.+|+.+.+||-.+..+.|.-.++|+..+.|.||..++++.|.-.
T Consensus 112 ~~~~~~v~-~~~~~l~~~~~~~~~~~~~~~~~~~~r~~r~av~~w~~~~~~~~la~~l~ky~~~~~~~~~Dll~l~h~~~ 190 (538)
T 1yvr_A 112 FRAVPEVC-RIPTHLFTFIQFKKDLKEGMKCGMWGRALRKAVSDWYNTKDALNLAMAVTKYKQRNGWSHKDLLRLSHIKP 190 (538)
T ss_dssp HHHHHHHC-CSHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHTSCHHHHHHHHTSCCCSSSCCHHHHHHHTTCCC
T ss_pred HHHHHHHH-CCchHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHHHhccccCCcHHHHhhhcCCCC
Confidence 34555553 567778889999977653221 27899999999999999988888889999999999999999999764
Q ss_pred cccCCccchhHHHhhhhhhhhhhhhcc-cccccCCCCCCcccCcchhhhcccchhhhcceeeEEEecCchhHHHHHhhhc
Q psy1643 377 FHQSPDKKLALYAIAFGFAYVSHRLIS-GKFLATPRVPPFVTSDDCFDKASDKVKTIVKDVAVVRCNTSHQKVVAAAVKT 455 (962)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (962)
+++. .+++.- |++.+.-. .|.+..+. .+.+ .+++..++.++.=+|.-..-.++ +..+..
T Consensus 191 ---~~~~-~~l~~~-----~l~~~~~~~~k~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~ 250 (538)
T 1yvr_A 191 ---ANEG-LTMVAK-----YVSKGWKEVQEAYKEKE-----LSPE-----TEKVLKYLEATERVKRTKDELEI-IHLIDE 250 (538)
T ss_dssp ---SSHH-HHHHHH-----HHHTCHHHHHHHTTTCC-----CCHH-----HHHHHHHHHHHHHHHTCCCHHHH-HHHHHH
T ss_pred ---cHHH-HHHHHH-----HhcCCHHHHHHhhcccc-----cccc-----HHHHHHHHHHHHHHHhcCCHHHH-HHHHHh
Confidence 3332 222221 33322111 12122211 1110 12222222222222222233333 456788
Q ss_pred cccccccccchhhhhcccchhhhcchhhhhhHHHhhhhccccccCCCCceecccCcccchhhhhcC-CCCCCCCCCChHH
Q psy1643 456 HSLGIESVCPKFAKSFKVNTACLEGMTQRGLLQSMHRLRKDNVLSSEDHAIVDESTTCGTYVKQLG-ASPVTEPPLHPAE 534 (962)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 534 (962)
|.+-+|.+-.....+-+|=.+-+..|.-..||..+-++-..+|+...+. .+.+ ++..|. ..++..--.||-.
T Consensus 251 ~~~t~E~~~~~l~~~~~~we~l~~~~~~~allrnlr~~~~~g~~~~~~~-~~~~------v~~~L~~~~~v~~s~~~P~~ 323 (538)
T 1yvr_A 251 YRLVREHLLTIHLKSKEIWKSLLQDMPLTALLRNLGKMTADSVLAPASS-EVSS------VCERLTNEKLLKKARIHPFH 323 (538)
T ss_dssp HCCCGGGSCTTGGGCHHHHHHHHHTCCHHHHHHHHHHHHHTTTTCTTCH-HHHH------HHHHHTCHHHHHHTTCCHHH
T ss_pred cCCCHhhchhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH-HHHH------HHHHhcCHHhHhhccCCcHH
Confidence 9999998833333333444455668888889999999988888866554 4433 222221 1223334579999
Q ss_pred HHHHhhhhhhhcccccccccccccCCCCCCCCCCccccccccCCCcceeccCCchHHHHHHHHHHHhhcccccccCceee
Q psy1643 535 VLAAYAEYVLAPVTKMASFQKKAVKPPPSEGGGGDQAQEKSEDETPVLTAKAPEPAIVSALQELYKSSFSNLKTHDSLKI 614 (962)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (962)
++++|.+|.-.. ++-. . ..-.|.+.+..+|.+.|..+|.+++.- ...|
T Consensus 324 ~~~a~r~y~~g~---------------------~~~~---~-------i~w~~~~r~~~al~~~~~~~~~~~~~~-~~~v 371 (538)
T 1yvr_A 324 ILVALETYKKGH---------------------GNRG---K-------LRWIPDTSIVEALDNAFYKSFKLVEPT-GKRF 371 (538)
T ss_dssp HHHHHHHHHHCC------------------------------------CCCCCCHHHHHHHHHHHHHTSCCCCCC-CCCE
T ss_pred HHHHHHHhhccC---------------------CcCC---C-------cCCCcchhHHHHHHHHHHHHHhhcCCC-CceE
Confidence 999999996420 0000 0 012345778899999999999987643 5778
Q ss_pred EEeecCCccccCCCCCCCCCCCCCchhHHHHHHHHHhhhccccceEEeeccCCcccceeeecccCCCCcccCchhHHhhh
Q psy1643 615 SVCLDLQPRFESQPCRDYRPLSGSHVAVLVLESLLRMVDYKMDNIRLVGFKDAKVRPIVRLKTHNCDDNLEGLDDLVDEL 694 (962)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (962)
-+|+|.-..-....- . ..+....+|.+..-.. -..-|++.||.|.++- .++ .+. -+ .++.++++.|
T Consensus 372 ~lvvD~SgSM~~~~~-~-~~l~~~~~Aa~l~~~~----~~~~d~vglv~Fs~~~-~~~-~~t---~~---~~l~~~l~~l 437 (538)
T 1yvr_A 372 LLAIDVSASMNQRVL-G-SILNASVVAAAMCMLV----ARTEKDSHMVAFSDEM-LPC-PIT---VN---MLLHEVVEKM 437 (538)
T ss_dssp EEEEECSGGGGSBST-T-SSCBHHHHHHHHHHHH----HHHCSSEEEEEESSSE-ECC-SCC---TT---SCHHHHHHHH
T ss_pred EEEEECccccCCCCC-C-CcHHHHHHHHHHHHHH----hccCCceEEEEECCCc-eEc-CCC---Cc---ccHHHHHHHH
Confidence 899998665432111 1 1132222221211111 1356899999999842 111 111 11 2377777777
Q ss_pred h
Q psy1643 695 A 695 (962)
Q Consensus 695 ~ 695 (962)
.
T Consensus 438 ~ 438 (538)
T 1yvr_A 438 S 438 (538)
T ss_dssp T
T ss_pred h
Confidence 5
No 5
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=68.10 E-value=6.9 Score=33.51 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=20.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 904 PNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAALT 950 (962)
Q Consensus 904 PGIDSSEEEQLERIRELEEENKEAEQELQEAVKEAEELLEQVQEALr 950 (962)
||+..|...|.+.+.+.-..-.+...+|+..+.+++..+.+++..|.
T Consensus 3 ~~~~~~~~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 3 PGIPGSTSELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666555555666666666666666666665553
No 6
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=60.24 E-value=1.2e+02 Score=28.97 Aligned_cols=116 Identities=11% Similarity=0.114 Sum_probs=76.0
Q ss_pred CCcCCCCCCcchHHHhhhCHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhhHHH
Q psy1643 819 HLKYMPKLKAKTPIQQLLSSAEQADNFCNSVGILQQTAIPSKFSGFDRGGSQTPQQQTQQEDYAHLFATLISRCARDIDA 898 (962)
Q Consensus 819 ~~~~~PmADRLTQLQDCLD~aQLAEQFcNSIGYLQRdAPPSsFsPndKIsSpdPqQqqp~EDnpQEFATDIIrKAKQIE~ 898 (962)
-.+.++-.| +-.|=..+| .+++..-.+.+.+.-..+. +..+...+|+..++.++.++..
T Consensus 87 fitP~dReD-I~~L~~~lD--dI~D~ie~~a~~l~l~~~~------------------~~~~~~~~l~~~i~~~~~~l~~ 145 (227)
T 3l39_A 87 FITPFDRED-IHDLASCMD--DVIDGINSSAKRIVIYNPR------------------PISESGKELSRLIHEEAINIGK 145 (227)
T ss_dssp SCCSSCHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHCCS------------------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHH-HHHHHHHHH--HHHHHHHHHHHHhhccCCC------------------CCCHHHHHHHHHHHHHHHHHHH
Confidence 334444445 556777777 7888888887777654211 0123678899999999999999
Q ss_pred HHHhCCCCC-CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHh
Q psy1643 899 LIESLPNED-ST--TELQLASLRKLEQDNQGAAERLEDTVRRGE------LLLEQIQAALTDIAQS 955 (962)
Q Consensus 899 LIDSLPGID-SS--EEEQLERIRELEEENKEAEQELQEAVKEAE------ELLEQVQEALrdIAQS 955 (962)
.|..|+.+. .. -.+-..+|.+||.|-..+..+....+-+.+ -.+.+|-+.|..++|.
T Consensus 146 ai~~L~~~~~~~~~i~~~~~eI~~lE~eaD~l~~~~~~~Lf~~e~d~i~~i~~keI~~~Le~~aD~ 211 (227)
T 3l39_A 146 AMDELETFRKNPKPLRDYCTQLHDIENQADDVYELFITKLFEEEKDCIELIKIKEIMHELEKTTDA 211 (227)
T ss_dssp HHTTTTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999875 33 233446788888888888776666665544 1223344445555554
No 7
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=58.73 E-value=1.2e+02 Score=28.34 Aligned_cols=112 Identities=11% Similarity=0.008 Sum_probs=78.1
Q ss_pred chHHHhhhCHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhCC----
Q psy1643 829 KTPIQQLLSSAEQADNFCNSVGILQQTAIPSKFSGFDRGGSQTPQQQTQQEDYAHLFATLISRCARDIDALIESLP---- 904 (962)
Q Consensus 829 LTQLQDCLD~aQLAEQFcNSIGYLQRdAPPSsFsPndKIsSpdPqQqqp~EDnpQEFATDIIrKAKQIE~LIDSLP---- 904 (962)
+..|=..+| .+++..-++.+.+.-.. . .+ | .+..+...+|+..++...+.+...|..|.
T Consensus 86 i~~L~~~lD--~I~D~~~~~a~~~~~~~-~-~~----------~---~~~~~~~~~~~~~~~~~~~~~~~ai~~l~~l~e 148 (227)
T 2olt_A 86 LLELLTQQD--KIANKAKDISGRVIGRQ-L-LI----------P---QALQVPFIAYLQRCIDAVGLAQQVINELDDLLE 148 (227)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHT-C-CC----------C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHhcC-C-CC----------C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666 77888888877776551 0 01 1 12235788899999999999998888886
Q ss_pred -CCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhh
Q psy1643 905 -NEDSTT----ELQLASLRKLEQDNQGAAERLEDTVRRGEL--------LLEQIQAALTDIAQSQL 957 (962)
Q Consensus 905 -GIDSSE----EEQLERIRELEEENKEAEQELQEAVKEAEE--------LLEQVQEALrdIAQSQL 957 (962)
|...+. .+-..+|.++|.+-..+..++...+-+.+. .+..|=+.|..|+|++-
T Consensus 149 ~~~~~~~~~~~~~~~~~i~~lE~~~D~l~~~~~~~Lf~~~~~~d~~~~i~~~ei~~~lE~i~D~~e 214 (227)
T 2olt_A 149 AGFRGREVDFVAKMINELDIIEEDTDDLQIQLRRQLFALESELNPVDVMFLYKTIEWVGGLADLAE 214 (227)
T ss_dssp SCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333 455678999999999999988888887654 45556666677777654
No 8
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=52.08 E-value=94 Score=25.19 Aligned_cols=64 Identities=11% Similarity=0.126 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 879 EDYAHLFATLISRCARDIDALIESLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLE 943 (962)
Q Consensus 879 EDnpQEFATDIIrKAKQIE~LIDSLPGIDSSEEEQLERIRELEEENKEAEQELQEAVKEAEELLE 943 (962)
.+..++|-.=|-.+...+... +.+|+--.+-+.|++..+.|+.|+..-...+..+...|+.|+.
T Consensus 8 ~~~l~el~~WL~~~e~~l~~~-~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~ 71 (119)
T 3uun_A 8 QTALEEVLSWLLSAEDTLQAQ-GEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIG 71 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-CSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344555555555554444321 1122211234577888888888888888888888888888875
No 9
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=46.61 E-value=1.3e+02 Score=25.26 Aligned_cols=66 Identities=17% Similarity=0.082 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhCCCCCCCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 880 DYAHLFATLISRCARDIDALIESLPNEDSTTELQLASLRKLEQD----------NQGAAERLEDTVRRGELLLEQIQAAL 949 (962)
Q Consensus 880 DnpQEFATDIIrKAKQIE~LIDSLPGIDSSEEEQLERIRELEEE----------NKEAEQELQEAVKEAEELLEQVQEAL 949 (962)
+.++..|.+|....++|+..++.| ...+..|... -.++-++.....++-.++|..|...|
T Consensus 14 ~~l~~~a~~~~~~~~~i~~~l~~L----------~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l 83 (103)
T 4i0x_B 14 DHIEQVTSRARGFKEFVTENLDQL----------ESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAA 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778899999999998888776 2334444433 44445667777777777777888777
Q ss_pred HHHHHh
Q psy1643 950 TDIAQS 955 (962)
Q Consensus 950 rdIAQS 955 (962)
+..++.
T Consensus 84 ~~a~~~ 89 (103)
T 4i0x_B 84 RTAHGA 89 (103)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 777654
No 10
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=44.77 E-value=79 Score=29.08 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHhCCCCCCCHHHHHHH-HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 879 EDYAHLFATLISRCARDIDALIESLPNEDSTTELQLAS-LRKL----------EQDNQGAAERLEDTVRRGELLLEQIQA 947 (962)
Q Consensus 879 EDnpQEFATDIIrKAKQIE~LIDSLPGIDSSEEEQLER-IREL----------EEENKEAEQELQEAVKEAEELLEQVQE 947 (962)
...+++|+..|.+.+++|-. ...|.+. |..| .+.++++++|++++-++.++.+++-+.
T Consensus 49 ~~~~~~f~~~~~ela~dli~-----------k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ 117 (132)
T 1ykh_B 49 VVPPEEFSNTIDELSTDIIL-----------KTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEK 117 (132)
T ss_dssp CCCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999998842 3334433 4444 456677788888888888888888888
Q ss_pred HHHHHHH
Q psy1643 948 ALTDIAQ 954 (962)
Q Consensus 948 ALrdIAQ 954 (962)
++..|-+
T Consensus 118 ll~~v~~ 124 (132)
T 1ykh_B 118 LMRHVDS 124 (132)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 11
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=41.52 E-value=76 Score=30.00 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHhCCCCCCCHHHHHHH-HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 879 EDYAHLFATLISRCARDIDALIESLPNEDSTTELQLAS-LRKL----------EQDNQGAAERLEDTVRRGELLLEQIQA 947 (962)
Q Consensus 879 EDnpQEFATDIIrKAKQIE~LIDSLPGIDSSEEEQLER-IREL----------EEENKEAEQELQEAVKEAEELLEQVQE 947 (962)
...+++|+..|.+.+++|-. ...|.+. |..| .+.++++++|++++-++.++.+++-+.
T Consensus 49 ~~~~~~f~~~~~ela~dli~-----------kakqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ 117 (151)
T 1yke_B 49 VVPPEEFSNTIDELSTDIIL-----------KTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEK 117 (151)
T ss_dssp -CCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999998842 3334433 4444 456677788888888888888888888
Q ss_pred HHHHHHH
Q psy1643 948 ALTDIAQ 954 (962)
Q Consensus 948 ALrdIAQ 954 (962)
++..|-+
T Consensus 118 ll~~v~~ 124 (151)
T 1yke_B 118 LLRHVDS 124 (151)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877754
No 12
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=38.54 E-value=1.4e+02 Score=24.27 Aligned_cols=33 Identities=12% Similarity=0.212 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 911 ELQLASLRKLEQDNQGAAERLEDTVRRGELLLE 943 (962)
Q Consensus 911 EEQLERIRELEEENKEAEQELQEAVKEAEELLE 943 (962)
+.|++..+.|+.|+..-...+..+...|+.|+.
T Consensus 39 ~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~ 71 (118)
T 3uul_A 39 KEQFATHETFMMELSAHQSSVGSVLQAGNQLMT 71 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777777764
No 13
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=37.42 E-value=68 Score=27.33 Aligned_cols=53 Identities=17% Similarity=0.272 Sum_probs=38.7
Q ss_pred hHHHHHHhCCCCCCCH----HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 895 DIDALIESLPNEDSTT----ELQ----LASLRKLEQDNQGAAERLEDTVRRGELLLEQIQA 947 (962)
Q Consensus 895 QIE~LIDSLPGIDSSE----EEQ----LERIRELEEENKEAEQELQEAVKEAEELLEQVQE 947 (962)
-++.|=+.+|.+..++ -.- .+.|..|+++.+....+.++.-++.+.|..+++.
T Consensus 19 ~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 19 SLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678889999764322 121 3559999999999998888888888888777653
No 14
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=35.38 E-value=86 Score=26.56 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 907 DSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAALTD 951 (962)
Q Consensus 907 DSSEEEQLERIRELEEENKEAEQELQEAVKEAEELLEQVQEALrd 951 (962)
..-.|.|+.++++....+...-++|+..-.+.|+.++.+..+|++
T Consensus 6 ktRse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 6 KTRSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999999999999999988864
No 15
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=34.82 E-value=1.7e+02 Score=23.26 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhC
Q psy1643 880 DYAHLFATLISRCARDIDALIESL 903 (962)
Q Consensus 880 DnpQEFATDIIrKAKQIE~LIDSL 903 (962)
+..+..|..+-..+.+|+.+++.|
T Consensus 12 ~~l~~~A~~~~~~~~~i~~~l~~L 35 (99)
T 3zbh_A 12 EELRGVARQYNVESSNVTELIARL 35 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777666666555
No 16
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=34.49 E-value=1.6e+02 Score=24.17 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 910 TELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAALTD 951 (962)
Q Consensus 910 EEEQLERIRELEEENKEAEQELQEAVKEAEELLEQVQEALrd 951 (962)
.|.|+.++++....+...-.+|+..-.+.|...+.++.+|++
T Consensus 2 aeq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 2 SERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 578899999999999888889999999999888888888764
No 17
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=33.78 E-value=74 Score=30.03 Aligned_cols=60 Identities=23% Similarity=0.232 Sum_probs=43.4
Q ss_pred HHHhhHHHHHHhCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 891 RCARDIDALIESLPNEDSTTELQ-LASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAALTDIAQ 954 (962)
Q Consensus 891 rKAKQIE~LIDSLPGIDSSEEEQ-LERIRELEEENKEAEQELQEAVKEAEELLEQVQEALrdIAQ 954 (962)
-+.+=.+.|-+||-- +..| .+++++|+.|++...++|+++..+.|.|-...+..=..|++
T Consensus 50 TCNqTV~tL~~SL~~----ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 50 TANHTVMALMASLDA----EKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 344556677777732 2222 45699999999999999999999999988888776666654
No 18
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.35 E-value=1.3e+02 Score=26.19 Aligned_cols=6 Identities=17% Similarity=0.302 Sum_probs=0.9
Q ss_pred CCCCCC
Q psy1643 903 LPNEDS 908 (962)
Q Consensus 903 LPGIDS 908 (962)
.-|+++
T Consensus 15 ~~~mgt 20 (72)
T 3nmd_A 15 IEGRGS 20 (72)
T ss_dssp ----CH
T ss_pred cccCCc
Confidence 344443
No 19
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=31.08 E-value=2e+02 Score=22.87 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1643 930 RLEDTVRRGELLLEQIQAALTDIAQS 955 (962)
Q Consensus 930 ELQEAVKEAEELLEQVQEALrdIAQS 955 (962)
+....+++-.++|..+...|..+|+.
T Consensus 60 ~~~~~~~~~~~~L~~i~~~L~~~A~~ 85 (93)
T 4ioe_A 60 QSKQAMQQYIPILEGISTDLKRIADK 85 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666553
No 20
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=30.52 E-value=2.2e+02 Score=23.07 Aligned_cols=24 Identities=8% Similarity=0.099 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhC
Q psy1643 880 DYAHLFATLISRCARDIDALIESL 903 (962)
Q Consensus 880 DnpQEFATDIIrKAKQIE~LIDSL 903 (962)
+..+..|..+-..+.+|+.+++.|
T Consensus 11 e~l~~~A~~~~~~~~~i~~~l~~L 34 (98)
T 3gwk_C 11 EELRSSAQKYTAGSQQVTEVLNLL 34 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777776666666554
No 21
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=29.55 E-value=1.8e+02 Score=27.60 Aligned_cols=65 Identities=18% Similarity=0.315 Sum_probs=45.1
Q ss_pred HHHHhhHHHHHHh--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q psy1643 890 SRCARDIDALIES--LPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQ-------IQAALTDIAQ 954 (962)
Q Consensus 890 IrKAKQIE~LIDS--LPGIDSSEEEQLERIRELEEENKEAEQELQEAVKEAEELLEQ-------VQEALrdIAQ 954 (962)
..--.+.+..+.+ +|+--.+-+.++++.+.|++|+..-+.....+...|+.|+.. |++.|..+.+
T Consensus 232 ~~Wl~~~~~~l~~~~~~~d~~~~e~ll~~h~~l~~ei~~~~~~~~~l~~~g~~Ll~~~~~~~~~i~~~l~~L~~ 305 (323)
T 3edv_A 232 MLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTE 305 (323)
T ss_dssp HHHHHHHHHHHHTCCCCCSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 3333444555555 333223567788999999999999999999999999998873 6666655544
No 22
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=28.60 E-value=2.4e+02 Score=25.43 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHhCCCCCCCH--HHHHHHHHHHHHHHHHH
Q psy1643 879 EDYAHLFATLISRCARDIDALIESLPNEDSTT--ELQLASLRKLEQDNQGA 927 (962)
Q Consensus 879 EDnpQEFATDIIrKAKQIE~LIDSLPGIDSSE--EEQLERIRELEEENKEA 927 (962)
++..+-|.+..-.....|+.+|+.++ .++ ++=..+|..|+..+.++
T Consensus 30 ~E~~~~F~~~F~~~~~~Ie~~l~~~~---~~~~ld~i~~~I~~Lqk~v~da 77 (111)
T 2l3l_A 30 KENSHFFVATFARERAAVEELLERAE---SVERLEEAASRLQGLQKLINDS 77 (111)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCc---hhhHHHHHHHHHHHHHHHHHHH
Confidence 45888999999999999999999886 222 22245667776666655
No 23
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=27.26 E-value=37 Score=31.11 Aligned_cols=50 Identities=26% Similarity=0.299 Sum_probs=38.1
Q ss_pred HHHHhhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 890 SRCARDIDALIESLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGE 939 (962)
Q Consensus 890 IrKAKQIE~LIDSLPGIDSSEEEQLERIRELEEENKEAEQELQEAVKEAE 939 (962)
+-+-+-.+.|-+||--...-..+|.+++++|+.|++...++|+++.-.+|
T Consensus 42 aTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~~~~~ 91 (99)
T 3ni0_A 42 NSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRIQKE 91 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888998665444556688999999999999999998875443
No 24
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=27.01 E-value=96 Score=28.10 Aligned_cols=59 Identities=10% Similarity=0.188 Sum_probs=30.3
Q ss_pred hhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 894 RDIDALIESLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAALTDI 952 (962)
Q Consensus 894 KQIE~LIDSLPGIDSSEEEQLERIRELEEENKEAEQELQEAVKEAEELLEQVQEALrdI 952 (962)
++|-.+++.+..-+.+.++..+.+.+-.+++++.-++|++..+.-+..+...++.+...
T Consensus 63 ~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~ 121 (142)
T 3gp4_A 63 EALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPA 121 (142)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35665665443323344444444444444444445555556666666666666555443
No 25
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.84 E-value=1.5e+02 Score=31.14 Aligned_cols=35 Identities=14% Similarity=0.076 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 914 LASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAA 948 (962)
Q Consensus 914 LERIRELEEENKEAEQELQEAVKEAEELLEQVQEA 948 (962)
.+.|.+++.+++++.+++.+.-.+...|..+++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 23 KEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44566666666666666666655556666666554
No 26
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=23.32 E-value=2.3e+02 Score=27.30 Aligned_cols=17 Identities=24% Similarity=0.137 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1643 911 ELQLASLRKLEQDNQGA 927 (962)
Q Consensus 911 EEQLERIRELEEENKEA 927 (962)
++|.+.|++|.++.+..
T Consensus 70 ~EQq~ql~~I~~e~r~~ 86 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQ 86 (175)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555554444333
No 27
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.13 E-value=2.1e+02 Score=23.78 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=35.9
Q ss_pred hHHHHHHhCCCC---CCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 895 DIDALIESLPNE---DSTTELQ----LASLRKLEQDNQGAAERLEDTVRRGELLLEQIQ 946 (962)
Q Consensus 895 QIE~LIDSLPGI---DSSEEEQ----LERIRELEEENKEAEQELQEAVKEAEELLEQVQ 946 (962)
-|+.|=+.+|+. ..|-.+= .+.|+.|++++++.+.++.+.-++.+.|-.+++
T Consensus 20 ~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 20 SFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777764 3333332 355999999999888888887777777766664
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.84 E-value=5.9e+02 Score=26.37 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 913 QLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAA 948 (962)
Q Consensus 913 QLERIRELEEENKEAEQELQEAVKEAEELLEQVQEA 948 (962)
+.+.+++|++|..+.++++++.-++.+++-.+.+..
T Consensus 535 ~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 535 KQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 334455555555555544444444444333333333
No 29
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=21.83 E-value=2.1e+02 Score=27.95 Aligned_cols=24 Identities=4% Similarity=0.073 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhC
Q psy1643 880 DYAHLFATLISRCARDIDALIESL 903 (962)
Q Consensus 880 DnpQEFATDIIrKAKQIE~LIDSL 903 (962)
+.++.||......+++|..+|..+
T Consensus 119 ~Evr~La~~t~~~~~~I~~~i~~i 142 (213)
T 3g67_A 119 NEVQNLSNETNEVTKQIVEKAREI 142 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888776
No 30
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=21.75 E-value=2.6e+02 Score=24.47 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1643 915 ASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAALTDIAQS 955 (962)
Q Consensus 915 ERIRELEEENKEAEQELQEAVKEAEELLEQVQEALrdIAQS 955 (962)
++++.|+..+++...+....-.+...+++.++..|.++.+-
T Consensus 27 ~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~el 67 (79)
T 3cvf_A 27 HQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSEL 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34666666666666666666677777778888777766553
No 31
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=20.68 E-value=4e+02 Score=22.77 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=39.9
Q ss_pred HHhhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 892 CARDIDALIESLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAALTDI 952 (962)
Q Consensus 892 KAKQIE~LIDSLPGIDSSEEEQLERIRELEEENKEAEQELQEAVKEAEELLEQVQEALrdI 952 (962)
..++|+..|...|+. +++...+.+.+.++....+..-..+.|.-|....+.|+.-++.+
T Consensus 41 i~~~~~~~~~~~~~~--~~~~r~~~l~~I~~~~~~~~~l~dEKv~lA~~~~dlvdkhirrL 99 (104)
T 4afl_A 41 IDKLATEYMSSARSL--SSEEKLALLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRL 99 (104)
T ss_dssp HHHHHHHHHTCCSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777778765 45555555667777777776666777777777777777776654
No 32
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=20.55 E-value=3.2e+02 Score=21.59 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhCCCCCCCHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 880 DYAHLFATLISRCARDIDALIESLPNEDSTTELQLASLRKL--------EQDNQGAAERLEDTVRRGELLLEQIQAALTD 951 (962)
Q Consensus 880 DnpQEFATDIIrKAKQIE~LIDSLPGIDSSEEEQLERIREL--------EEENKEAEQELQEAVKEAEELLEQVQEALrd 951 (962)
+..+..|..+-..+.+|+.+++.|= ..+..| .+.-.+.-.+......+...+|..+...|..
T Consensus 9 ~~l~~~A~~~~~~~~~l~~~l~~L~----------~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~ 78 (97)
T 2vs0_A 9 EEIRAKSQSYGQGSDQIRQILSDLT----------RAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNS 78 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777776666665551 112222 1112222234555555555666666666666
Q ss_pred HHHh
Q psy1643 952 IAQS 955 (962)
Q Consensus 952 IAQS 955 (962)
+|+.
T Consensus 79 ~a~~ 82 (97)
T 2vs0_A 79 TADA 82 (97)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 33
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=20.54 E-value=2e+02 Score=24.74 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 915 ASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAA 948 (962)
Q Consensus 915 ERIRELEEENKEAEQELQEAVKEAEELLEQVQEA 948 (962)
+.|+.|+++++....+....-.+-+.|..+|+++
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5588888888888888877777777777777653
No 34
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=20.32 E-value=3.4e+02 Score=25.01 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=34.5
Q ss_pred hHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 895 DIDALIESLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAA 948 (962)
Q Consensus 895 QIE~LIDSLPGIDSSEEEQLERIRELEEENKEAEQELQEAVKEAEELLEQVQEA 948 (962)
|||.|=|.| |++.+.+.+|..|+++..++++..-...+.|-.++..+
T Consensus 31 qVdlLKD~L-------Ee~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 31 QVDTLKDML-------LELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888876 56777788888888888887777666666655555543
Done!