Query psy1643
Match_columns 962
No_of_seqs 116 out of 148
Neff 1.7
Searched_HMMs 13730
Date Fri Aug 16 21:06:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1643.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1643hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ykhb1 a.252.1.1 (B:2-130) RN 100.0 2.6E-37 1.9E-41 280.7 12.0 125 826-952 1-128 (129)
2 d1yvra1 a.118.25.1 (A:5-363) 6 98.2 8.8E-08 6.4E-12 96.4 0.6 271 263-604 84-358 (359)
3 d1nkpa_ a.38.1.1 (A:) Myc prot 55.4 16 0.0012 28.7 7.0 53 895-947 24-84 (88)
4 d1szia_ a.24.23.1 (A:) Mannose 46.6 36 0.0026 32.2 9.0 50 878-927 121-171 (226)
5 d1hcia4 a.7.1.1 (A:633-746) al 46.2 45 0.0033 25.9 8.3 44 901-944 30-73 (114)
6 d1nlwa_ a.38.1.1 (A:) Mad prot 41.6 35 0.0026 26.2 6.8 52 895-946 19-78 (79)
7 d1s35a1 a.7.1.1 (A:1063-1168) 38.9 34 0.0025 25.7 6.3 64 878-943 4-67 (106)
8 d1ykhb1 a.252.1.1 (B:2-130) RN 31.0 71 0.0051 27.3 7.7 66 878-954 47-123 (129)
9 d1fxkc_ a.2.5.1 (C:) Prefoldin 30.8 42 0.0031 27.3 6.0 9 829-837 17-25 (133)
10 d1vcsa1 a.47.2.1 (A:8-96) Vesi 25.2 79 0.0057 25.4 6.6 41 882-928 4-44 (89)
11 d1xppa_ d.74.3.2 (A:) DNA-dire 23.4 66 0.0048 25.9 5.8 69 645-732 26-97 (99)
12 d1cuna2 a.7.1.1 (A:116-219) Sp 23.0 80 0.0058 23.7 5.9 35 910-944 32-66 (104)
13 d1s35a2 a.7.1.1 (A:1169-1273) 21.5 1.4E+02 0.0099 22.3 7.0 50 895-944 18-69 (105)
14 d2oa5a1 d.362.1.1 (A:7-102) Un 20.3 78 0.0056 26.7 5.7 52 907-958 1-63 (96)
No 1
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=2.6e-37 Score=280.65 Aligned_cols=125 Identities=18% Similarity=0.278 Sum_probs=106.9
Q ss_pred CCcchHHHhhhCHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC-CC--CCCCCcchHHHHHHHHHHHHHHhhHHHHHHh
Q psy1643 826 LKAKTPIQQLLSSAEQADNFCNSVGILQQTAIPSKFSGFDRGGS-QT--PQQQTQQEDYAHLFATLISRCARDIDALIES 902 (962)
Q Consensus 826 ADRLTQLQDCLD~aQLAEQFcNSIGYLQRdAPPSsFsPndKIsS-pd--PqQqqp~EDnpQEFATDIIrKAKQIE~LIDS 902 (962)
+||||||||||| |||+|||||||||+++|+|+.|+++..... +. +.++..+++.+++||+||+.|+||||+||||
T Consensus 1 sDrLTQLQd~ln--qla~~f~nsig~L~~~a~~~~~~~~~~~~~~~~~~~~~~e~f~~~~~elA~dii~kakqId~LI~s 78 (129)
T d1ykhb1 1 TDRMTQLQICLD--QMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDS 78 (129)
T ss_dssp CHHHHHHHHHHH--HHHHHHHHHHHHHHHSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHH--HHHHHHHHHHHHHhcCCCcccCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 699999999999 999999999999999999999998875422 11 2233456889999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 903 LPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAALTDI 952 (962)
Q Consensus 903 LPGIDSSEEEQLERIRELEEENKEAEQELQEAVKEAEELLEQVQEALrdI 952 (962)
|||+++|||+|+++|++|++||+++++||+++|+++|.||++|+++|++|
T Consensus 79 LP~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~i~~i 128 (129)
T d1ykhb1 79 LPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDF 128 (129)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999876
No 2
>d1yvra1 a.118.25.1 (A:5-363) 60-kda SS-aARo ribonucleoprotein {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=98.22 E-value=8.8e-08 Score=96.39 Aligned_cols=271 Identities=22% Similarity=0.347 Sum_probs=170.3
Q ss_pred ehhhHHHHHHHHHHHhhcCCCCCCCcceeEeeehhhhhhhhhhccccCchhHHHHHHHHhcCCCCCC---CchHHHHHHH
Q psy1643 263 NYDIVLYVLAKCLQLVQQDPKAKLPSTTIIEFRTKVLELAVDRVAGQNSERFLMFVLYMLNFSPKSL---RPDAVRKQLQ 339 (962)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 339 (962)
+-|-.|++||-|-+. -|++. |..+.+ ++-+|. .+..-+++||-|+-.+.-..- =.-.+||.++
T Consensus 84 r~~p~l~aLal~a~~--~d~~~----------r~~a~~-~~~~v~-r~~~~L~~fv~~~~~~~~~~~~~~~gr~lrkav~ 149 (359)
T d1yvra1 84 KQEPTLFALAVCSQC--SDIKT----------KQAAFR-AVPEVC-RIPTHLFTFIQFKKDLKEGMKCGMWGRALRKAVS 149 (359)
T ss_dssp CSHHHHHHHHHHHTS--SCHHH----------HHHHHH-HHHHHC-CSHHHHHHHHHHHHHC--------CCHHHHHHHH
T ss_pred CcchHHHHHHHHHhC--CCHHH----------HHHHHH-HHHHHh-cCchHHHHHHHHHHHhccCcCCCcccHHHHHHHH
Confidence 346677888877542 34332 233333 233444 355667899999988764322 2479999999
Q ss_pred HHhcccCCCcEEEEEEeecccccccccchheeeeeeccccCCccchhHHHhhhhhhhhhhhhcccccccCCCCCCcccCc
Q psy1643 340 KWYMGKESDQLVVLVAKCSVYQGLSHANVLKLIHFDVFHQSPDKKLALYAIAFGFAYVSHRLISGKFLATPRVPPFVTSD 419 (962)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (962)
+||-.+..++|.-.++|+.-..|.||.-+|++.|.. |.. . +...-|.|+..+.-...-... ++..++
T Consensus 150 ~Wy~~~~~~~LA~~~~Ky~~r~gwShkDlLrl~Hpk-----p~~--~--~~~~l~~~i~~g~~~~~~~~~---~~~~~~- 216 (359)
T d1yvra1 150 DWYNTKDALNLAMAVTKYKQRNGWSHKDLLRLSHIK-----PAN--E--GLTMVAKYVSKGWKEVQEAYK---EKELSP- 216 (359)
T ss_dssp HHHHTSCHHHHHHHHTSCCCSSSCCHHHHHHHTTCC-----CSS--H--HHHHHHHHHHTCHHHHHHHTT---TCCCCH-
T ss_pred HHHhcCCHHHHHHHHHhcCCCCCCCHHHHHHHcCCC-----CCc--H--HHHHHHHHHhcCccccccccc---cccccc-
Confidence 999999999998888899999999999999999853 221 1 122224454433211111111 111111
Q ss_pred chhhhcccchhhhcceeeEEEecCchhHHHHHhhhccccccccccchhhhhcccchhhhcchhhhhhHHHhhhhcccccc
Q psy1643 420 DCFDKASDKVKTIVKDVAVVRCNTSHQKVVAAAVKTHSLGIESVCPKFAKSFKVNTACLEGMTQRGLLQSMHRLRKDNVL 499 (962)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (962)
. .+.+..++..+.-++=.+. ...++..++.|.|..|.+=..+.++-.|-.+-++.|...-||+.+-+|-+.+|+
T Consensus 217 -~----~~~~~~~~~~~~~~k~~~~-~~~~~~lI~~~~Lt~E~~p~~~~~~~~vWeaLi~~mp~~ALLRNL~~l~~~gvl 290 (359)
T d1yvra1 217 -E----TEKVLKYLEATERVKRTKD-ELEIIHLIDEYRLVREHLLTIHLKSKEIWKSLLQDMPLTALLRNLGKMTADSVL 290 (359)
T ss_dssp -H----HHHHHHHHHHHHHHHTCCC-HHHHHHHHHHHCCCGGGSCTTGGGCHHHHHHHHHTCCHHHHHHHHHHHHHTTTT
T ss_pred -h----HHHHHHHHHHHHHHHhcCC-HHHHHHHHHHcCCCHHHhhhhhccCHHHHHHHHHcCCHHHHHHHHHHHhhcccC
Confidence 1 1122233333322232222 335566899999999999999999999999999999999999999999999999
Q ss_pred CCCCceecccCcccchhhhhc-CCCCCCCCCCChHHHHHHhhhhhhhcccccccccccccCCCCCCCCCCccccccccCC
Q psy1643 500 SSEDHAIVDESTTCGTYVKQL-GASPVTEPPLHPAEVLAAYAEYVLAPVTKMASFQKKAVKPPPSEGGGGDQAQEKSEDE 578 (962)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (962)
+..++. + ..++.+| ...-+..--.||-.+|.||..|-- ||| +...
T Consensus 291 ~~~~~~-~------~~V~~rL~D~~~l~~arihP~~~L~A~~~Y~~--------------------g~~-~~~~------ 336 (359)
T d1yvra1 291 APASSE-V------SSVCERLTNEKLLKKARIHPFHILVALETYKK--------------------GHG-NRGK------ 336 (359)
T ss_dssp CTTCHH-H------HHHHHHHTCHHHHHHTTCCHHHHHHHHHHHHH--------------------CC------------
T ss_pred CCCcHH-H------HHHHHHhCCHHHHHHcccChHHHHHHHHHHHh--------------------cCC-cccc------
Confidence 643322 1 1233333 122344567899999999998731 222 1111
Q ss_pred CcceeccCCchHHHHHHHHHHHhhcc
Q psy1643 579 TPVLTAKAPEPAIVSALQELYKSSFS 604 (962)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (962)
....|.+.|++||++.|.-||.
T Consensus 337 ----~~w~p~~~i~~AL~~A~~~sf~ 358 (359)
T d1yvra1 337 ----LRWIPDTSIVEALDNAFYKSFK 358 (359)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHTSC
T ss_pred ----CCCCCcHHHHHHHHHHHHHHcC
Confidence 1134779999999999999985
No 3
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.39 E-value=16 Score=28.69 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=35.3
Q ss_pred hHHHHHHhCCCCCCC----HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 895 DIDALIESLPNEDST----TELQ----LASLRKLEQDNQGAAERLEDTVRRGELLLEQIQA 947 (962)
Q Consensus 895 QIE~LIDSLPGIDSS----EEEQ----LERIRELEEENKEAEQELQEAVKEAEELLEQVQE 947 (962)
-|+.|-+.||+...+ ..+= .+.|+.|+++++++..++...-++-+.|..+++.
T Consensus 24 ~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~ 84 (88)
T d1nkpa_ 24 SFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999986432 2222 3558888888888777777666666666555543
No 4
>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=46.60 E-value=36 Score=32.15 Aligned_cols=50 Identities=22% Similarity=0.065 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHHHHHhhH-HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy1643 878 QEDYAHLFATLISRCARDI-DALIESLPNEDSTTELQLASLRKLEQDNQGA 927 (962)
Q Consensus 878 ~EDnpQEFATDIIrKAKQI-E~LIDSLPGIDSSEEEQLERIRELEEENKEA 927 (962)
.|...-.+|++|.+.=+-+ ..|+.++.|+..+-.+|+.+.+..-+|+...
T Consensus 121 vEsrtL~~ar~LtqQLqstc~~L~ssiqGLP~~iQdq~~~~r~~~~~L~~~ 171 (226)
T d1szia_ 121 VEARALSMFRDITQQLQSMCVALGASIQGLPSHVREQAQQARSQVNDLQAT 171 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445666788886655533 7899999999988889988888887777654
No 5
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.17 E-value=45 Score=25.94 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=37.1
Q ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 901 ESLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQ 944 (962)
Q Consensus 901 DSLPGIDSSEEEQLERIRELEEENKEAEQELQEAVKEAEELLEQ 944 (962)
+..+|-..+-+.|+++.+.|+.|+..-+.++..+...++.|++.
T Consensus 30 ~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~~~g~~L~~~ 73 (114)
T d1hcia4 30 RSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEA 73 (114)
T ss_dssp SCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445455788999999999999999999999999999998864
No 6
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.56 E-value=35 Score=26.16 Aligned_cols=52 Identities=19% Similarity=0.329 Sum_probs=37.3
Q ss_pred hHHHHHHhCCCCCCCH----H--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 895 DIDALIESLPNEDSTT----E--LQ--LASLRKLEQDNQGAAERLEDTVRRGELLLEQIQ 946 (962)
Q Consensus 895 QIE~LIDSLPGIDSSE----E--EQ--LERIRELEEENKEAEQELQEAVKEAEELLEQVQ 946 (962)
.|+.|-+.||+...+. . .+ .+.|+.|+++++....+.+..-.+.+.|..+++
T Consensus 19 ~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l~ 78 (79)
T d1nlwa_ 19 SLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (79)
T ss_dssp HHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6888999999754221 1 12 346899999988888888877777777766654
No 7
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.95 E-value=34 Score=25.69 Aligned_cols=64 Identities=14% Similarity=0.232 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHHHHHhhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 878 QEDYAHLFATLISRCARDIDALIESLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLE 943 (962)
Q Consensus 878 ~EDnpQEFATDIIrKAKQIE~LIDSLPGIDSSEEEQLERIRELEEENKEAEQELQEAVKEAEELLE 943 (962)
|-...++|..=|-.+.+.+.. +.+|+--.+-+.|++....|+.++..-+..+..++..|+.|+.
T Consensus 4 F~~~~~~l~~Wl~~~e~~l~~--~~~~~d~~~~~~~l~~h~~l~~ei~~~~~~~~~~~~~g~~L~~ 67 (106)
T d1s35a1 4 FLQDLDDFQAWLSITQKAVAS--EDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQ 67 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555544443321 2223322223445566778888888888888888888888863
No 8
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.97 E-value=71 Score=27.30 Aligned_cols=66 Identities=11% Similarity=0.083 Sum_probs=47.3
Q ss_pred chHHHHHHHHHHHHHHhhHHHHHHhCCCCCCCHHHHHHH-HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 878 QEDYAHLFATLISRCARDIDALIESLPNEDSTTELQLAS-LRKL----------EQDNQGAAERLEDTVRRGELLLEQIQ 946 (962)
Q Consensus 878 ~EDnpQEFATDIIrKAKQIE~LIDSLPGIDSSEEEQLER-IREL----------EEENKEAEQELQEAVKEAEELLEQVQ 946 (962)
....+++|+..+-+-+++|-. .+-|.+. |..| .+-++++++|++++-++.++.+.+-+
T Consensus 47 ~~~~~e~f~~~~~elA~dii~-----------kakqId~LI~sLP~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e 115 (129)
T d1ykhb1 47 TVVPPEEFSNTIDELSTDIIL-----------KTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKE 115 (129)
T ss_dssp -CCCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH-----------HHhhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999998843 3344443 4444 34456778888888888888888888
Q ss_pred HHHHHHHH
Q psy1643 947 AALTDIAQ 954 (962)
Q Consensus 947 EALrdIAQ 954 (962)
.++..|-.
T Consensus 116 ~ll~~i~~ 123 (129)
T d1ykhb1 116 KLMRHVDS 123 (129)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877744
No 9
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=30.85 E-value=42 Score=27.32 Aligned_cols=9 Identities=33% Similarity=0.250 Sum_probs=4.2
Q ss_pred chHHHhhhC
Q psy1643 829 KTPIQQLLS 837 (962)
Q Consensus 829 LTQLQDCLD 837 (962)
|.+||..++
T Consensus 17 l~~l~~~i~ 25 (133)
T d1fxkc_ 17 VELIQQQME 25 (133)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 10
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.19 E-value=79 Score=25.41 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy1643 882 AHLFATLISRCARDIDALIESLPNEDSTTELQLASLRKLEQDNQGAA 928 (962)
Q Consensus 882 pQEFATDIIrKAKQIE~LIDSLPGIDSSEEEQLERIRELEEENKEAE 928 (962)
-++|+.....-.+.|+ -|.+|+|.+ .. +.|++.+..+.++.
T Consensus 4 E~~y~~l~a~i~~kl~-~i~~~~gee---rk--~~l~~ie~~leEA~ 44 (89)
T d1vcsa1 4 EQDFAVLTAEITSKIA-RVPRLPPDE---KK--QMVANVEKQLEEAR 44 (89)
T ss_dssp HHHHHHHHHHHHHHHH-HGGGSCTTT---HH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHcCCchH---HH--HHHHHHHHhHHHHH
Confidence 3455555554445553 345555542 22 33555555444443
No 11
>d1xppa_ d.74.3.2 (A:) DNA-directed RNA polymerase subunit L, RpoL {Thermoplasma acidophilum [TaxId: 2303]}
Probab=23.41 E-value=66 Score=25.90 Aligned_cols=69 Identities=13% Similarity=0.178 Sum_probs=45.8
Q ss_pred HHHHHHhhhccccceEEeeccCCcc---cceeeecccCCCCcccCchhHHhhhhhcccCCCchhhhhhhcCCCchhHHHH
Q psy1643 645 LESLLRMVDYKMDNIRLVGFKDAKV---RPIVRLKTHNCDDNLEGLDDLVDELATVKLEDAPEAEKEEESGKDSADSIIK 721 (962)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (962)
|-.+||+.=.+.+++-..||+-.-- .|++|++|-+ ++-.+-|.+.++.| .+..+++.+
T Consensus 26 lgn~L~~~L~~~~~V~fagY~ipHPl~~~~~l~I~t~~-~~p~~~l~~a~~~l------------------i~~~~~l~~ 86 (99)
T d1xppa_ 26 LLRTLVEEILKDDQVDEARYYIKHPVIDNPQIYVRVKS-GKPQSAIKRAVRKL------------------SKLYEDLGT 86 (99)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSSTTTSCCEEEEEESS-SCHHHHHHHHHHHH------------------HHHHHHHHH
T ss_pred HHHHHHHHHhcCCCeeEEEEecCCcccCCeEEEEEeCC-CCHHHHHHHHHHHH------------------HHHHHHHHH
Confidence 4567787778899999999986543 6899999843 22222222222222 234678888
Q ss_pred hHHHHHHHHHh
Q psy1643 722 NYEKIWRYYKR 732 (962)
Q Consensus 722 ~~~~~~~~~~~ 732 (962)
++++-|+-|+.
T Consensus 87 ~~~~~~~~~~~ 97 (99)
T d1xppa_ 87 QFQKEFQRYES 97 (99)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988763
No 12
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=22.97 E-value=80 Score=23.68 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 910 TELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQ 944 (962)
Q Consensus 910 EEEQLERIRELEEENKEAEQELQEAVKEAEELLEQ 944 (962)
-+.++++.+.++.|+..-+.....++..|+.|+..
T Consensus 32 v~~ll~~h~~~~~ei~~~~~~~~~l~~~g~~L~~~ 66 (104)
T d1cuna2 32 IQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKK 66 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 35566778888888888888888888888887765
No 13
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.46 E-value=1.4e+02 Score=22.31 Aligned_cols=50 Identities=10% Similarity=0.217 Sum_probs=33.6
Q ss_pred hHHHHHHh--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1643 895 DIDALIES--LPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQ 944 (962)
Q Consensus 895 QIE~LIDS--LPGIDSSEEEQLERIRELEEENKEAEQELQEAVKEAEELLEQ 944 (962)
+.+.++.+ +|.=-.+-+.++++-..|+.++..-+.........|+.|+..
T Consensus 18 ~~e~~l~~~~~g~dl~~v~~l~k~h~~l~~~l~~~~~~v~~l~~~a~~L~~~ 69 (105)
T d1s35a2 18 NQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAE 69 (105)
T ss_dssp HHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 34556655 332223345666778888888888888888888888887653
No 14
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=20.28 E-value=78 Score=26.74 Aligned_cols=52 Identities=19% Similarity=0.332 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhhh
Q psy1643 907 DSTTELQLASLRKLEQDNQGAAERLEDT-----------VRRGELLLEQIQAALTDIAQSQLE 958 (962)
Q Consensus 907 DSSEEEQLERIRELEEENKEAEQELQEA-----------VKEAEELLEQVQEALrdIAQSQLn 958 (962)
|.|.|+=.++|.+|+-||+.+.+++++. =.++|.++...-..|...|...+.
T Consensus 1 d~t~EeLaaeL~rL~~ENk~LKkkl~~~~~~~~~d~~LT~~qke~~I~s~~~~lts~A~kKIe 63 (96)
T d2oa5a1 1 DKTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRKIE 63 (96)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777889999999999998888873 256788888888888777665543
Done!