Your job contains 1 sequence.
>psy1643
MAKKNKKGGKNTNNSAPGAASTSQCSGGSAKPANQAGPSKQNVPANQAGPSKQNVPVNQG
GAAKQNIQGSSSKQNVSANQAGPSKQNGPVKQTGASKQNGPVKQTSKETPRSRRKPSSLP
LQKEVEAIRLRRRVKMKPLKNTQCSIHLKHLPAPKSTHAPAEFRLKCILLFKQEYPMFYH
DNVKTPPVNFYYKFSTTKDRKAPAEMAIFNCVDQLVAQDKKDTILTTITSEGGEQNFIMF
QLKYLIKCLIVKVLDNSNPLLINYDIVLYVLAKCLQLVQQDPKAKLPSTTIIEFRTKVLE
LAVDRVAGQNSERFLMFVLYMLNFSPKSLRPDAVRKQLQKWYMGKESDQLVVLVAKCSVY
QGLSHANVLKLIHFDVFHQSPDKKLALYAIAFGFAYVSHRLISGKFLATPRVPPFVTSDD
CFDKASDKVKTIVKDVAVVRCNTSHQKVVAAAVKTHSLGIESVCPKFAKSFKVNTACLEG
MTQRGLLQSMHRLRKDNVLSSEDHAIVDESTTCGTYVKQLGASPVTEPPLHPAEVLAAYA
EYVLAPVTKMASFQKKAVKPPPSEGGGGDQAQEKSEDETPVLTAKAPEPAIVSALQELYK
SSFSNLKTHDSLKISVCLDLQPRFESQPCRDYRPLSGSHVAVLVLESLLRMVDYKMDNIR
LVGFKDAKVRPIVRLKTHNCDDNLEGLDDLVDELATVKLEDAPEAEKEEESGKDSADSII
KNYEKIWRYYKRQIPKARGITIHKLLSWSIKQMWHPDVYVVICSQENLSLYKTNVIFAEY
MEKTKRKNTNQENLSLYKTNVIFAEYMEKTKRKNTNSSHLKYMPKLKAKTPIQQLLSSAE
QADNFCNSVGILQQTAIPSKFSGFDRGGSQTPQQQTQQEDYAHLFATLISRCARDIDALI
ESLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAALTDIAQSQLETN
GV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1643
(962 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0040020 - symbol:MED21 "Mediator complex subunit 2... 347 1.7e-30 1
ZFIN|ZDB-GENE-040426-2763 - symbol:med21 "mediator comple... 319 1.7e-27 1
MGI|MGI:1347064 - symbol:Med21 "mediator complex subunit ... 313 7.4e-27 1
UNIPROTKB|Q2TBU8 - symbol:MED21 "Mediator of RNA polymera... 311 1.2e-26 1
UNIPROTKB|E1C1C6 - symbol:MED21 "Uncharacterized protein"... 310 1.6e-26 1
UNIPROTKB|F1SG80 - symbol:MED21 "Uncharacterized protein"... 307 3.3e-26 1
UNIPROTKB|Q13503 - symbol:MED21 "Mediator of RNA polymera... 306 4.2e-26 1
WB|WBGene00007704 - symbol:mdt-21 species:6239 "Caenorhab... 101 0.00034 1
UNIPROTKB|Q6BER6 - symbol:mdt-21 "Mediator of RNA polymer... 101 0.00034 1
>FB|FBgn0040020 [details] [associations]
symbol:MED21 "Mediator complex subunit 21" species:7227
"Drosophila melanogaster" [GO:0016591 "DNA-directed RNA polymerase
II, holoenzyme" evidence=ISS] [GO:0016592 "mediator complex"
evidence=ISS;IDA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=ISS] [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=ISS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] GO:GO:0006367
GO:GO:0016592 GO:GO:0001104 KO:K15152 EMBL:CM000458 CTD:9412
eggNOG:NOG247021 GeneTree:ENSGT00390000014557 OMA:QAEHFCN
InterPro:IPR021384 Pfam:PF11221 EMBL:AY071027 RefSeq:NP_001015223.1
RefSeq:NP_001015224.1 UniGene:Dm.29312 ProteinModelPortal:Q9W5P1
SMR:Q9W5P1 IntAct:Q9W5P1 STRING:Q9W5P1 PaxDb:Q9W5P1 PRIDE:Q9W5P1
EnsemblMetazoa:FBtr0113739 EnsemblMetazoa:FBtr0113740
GeneID:3354977 KEGG:dme:Dmel_CG17397 FlyBase:FBgn0040020
InParanoid:Q9W5P1 OrthoDB:EOG4SN052 PhylomeDB:Q9W5P1
GenomeRNAi:3354977 NextBio:849916 Bgee:Q9W5P1 Uniprot:Q9W5P1
Length = 142
Score = 347 (127.2 bits), Expect = 1.7e-30, P = 1.7e-30
Identities = 70/129 (54%), Positives = 98/129 (75%)
Query: 830 TPIQQLLSSAEQADNFCNSVGILQQTAIPSKFSGFDRGGSXXXXXXXXXEDYAHLFATLI 889
T +Q ++ +QA++FCN++G++QQT++PSKF F+R G EDYA LFA LI
Sbjct: 6 TQLQDTVN--QQAEHFCNAIGVIQQTSLPSKFVNFERIGPQTPIPCPPQEDYAQLFAQLI 63
Query: 890 SRCARDIDALIESLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAAL 949
+RCA+DID LIESLPNEDS+ ELQ +SL++LE +NQG A LE+ V++GELLLE++Q +L
Sbjct: 64 ARCAKDIDTLIESLPNEDSSIELQNSSLKRLEIENQGTARDLEEVVQKGELLLEKMQYSL 123
Query: 950 TDIAQSQLE 958
IAQ+QL+
Sbjct: 124 ECIAQAQLD 132
>ZFIN|ZDB-GENE-040426-2763 [details] [associations]
symbol:med21 "mediator complex subunit 21"
species:7955 "Danio rerio" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] ZFIN:ZDB-GENE-040426-2763 GO:GO:0005634 GO:GO:0006355
GO:GO:0006351 KO:K15152 EMBL:CR847994 CTD:9412 eggNOG:NOG247021
GeneTree:ENSGT00390000014557 HOGENOM:HOG000006767
HOVERGEN:HBG009229 OMA:QAEHFCN OrthoDB:EOG4TF0MJ InterPro:IPR021384
Pfam:PF11221 EMBL:BC049042 IPI:IPI00502820 RefSeq:NP_998588.1
UniGene:Dr.81879 ProteinModelPortal:Q7ZTI5 STRING:Q7ZTI5
PRIDE:Q7ZTI5 Ensembl:ENSDART00000032460 GeneID:406732
KEGG:dre:406732 InParanoid:Q7ZTI5 NextBio:20818251 Bgee:Q7ZTI5
Uniprot:Q7ZTI5
Length = 145
Score = 319 (117.4 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 69/130 (53%), Positives = 90/130 (69%)
Query: 830 TPIQQLLSSAEQADNFCNSVGILQQTAIPSKFSGFDRGGSXXXXXXXXXEDYAHLFATLI 889
T +Q ++S AD FCN++G+LQQ A P+ FS + E+YA LFA LI
Sbjct: 6 TQLQDAVNSL--ADQFCNAIGVLQQCAPPASFSNIQTAINKDQPSNPT-EEYAQLFAALI 62
Query: 890 SRCARDIDALIESLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAAL 949
+R A+D+D LI+SLP+E+ST LQ ASLR+LE++NQ AA RLE+ V RG+ LLE+IQ AL
Sbjct: 63 ARTAKDVDVLIDSLPSEESTAALQAASLRQLEEENQEAAARLEEVVYRGDALLEKIQTAL 122
Query: 950 TDIAQSQLET 959
DIAQSQL T
Sbjct: 123 ADIAQSQLRT 132
>MGI|MGI:1347064 [details] [associations]
symbol:Med21 "mediator complex subunit 21" species:10090
"Mus musculus" [GO:0001824 "blastocyst development" evidence=IMP]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IC] [GO:0016592 "mediator complex"
evidence=ISO;IDA] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] MGI:MGI:1347064 GO:GO:0045944
GO:GO:0006351 Reactome:REACT_127416 GO:GO:0003713 GO:GO:0006366
GO:GO:0019827 GO:GO:0001824 Reactome:REACT_27166 GO:GO:0016592
KO:K15152 CTD:9412 eggNOG:NOG247021 GeneTree:ENSGT00390000014557
HOGENOM:HOG000006767 HOVERGEN:HBG009229 OMA:QAEHFCN
OrthoDB:EOG4TF0MJ InterPro:IPR021384 Pfam:PF11221 EMBL:AK009742
EMBL:AK012217 EMBL:AK014428 EMBL:AK019417 EMBL:BC012286
IPI:IPI00131967 RefSeq:NP_079591.1 UniGene:Mm.26212
ProteinModelPortal:Q9CQ39 SMR:Q9CQ39 DIP:DIP-59522N IntAct:Q9CQ39
STRING:Q9CQ39 PhosphoSite:Q9CQ39 PaxDb:Q9CQ39 PRIDE:Q9CQ39
Ensembl:ENSMUST00000032429 GeneID:108098 KEGG:mmu:108098
InParanoid:Q9CQ39 NextBio:360058 Bgee:Q9CQ39 CleanEx:MM_MED21
Genevestigator:Q9CQ39 Uniprot:Q9CQ39
Length = 144
Score = 313 (115.2 bits), Expect = 7.4e-27, P = 7.4e-27
Identities = 69/133 (51%), Positives = 90/133 (67%)
Query: 830 TPIQQLLSSAEQADNFCNSVGILQQTAIPSKFSGFDRGGSXXXXXXXXXEDYAHLFATLI 889
T +Q ++S AD FCN++G+LQQ P+ FS + E+YA LFA LI
Sbjct: 6 TQLQDAVNSL--ADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPT-EEYAQLFAALI 62
Query: 890 SRCARDIDALIESLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAAL 949
+R A+DID LI+SLP+E+ST LQ ASL KLE++N AA LED V RG++LLE+IQ+AL
Sbjct: 63 ARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSAL 122
Query: 950 TDIAQSQLETNGV 962
DIAQSQL+T V
Sbjct: 123 ADIAQSQLKTRSV 135
>UNIPROTKB|Q2TBU8 [details] [associations]
symbol:MED21 "Mediator of RNA polymerase II transcription
subunit 21" species:9913 "Bos taurus" [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0016592 "mediator complex" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0001824
"blastocyst development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] GO:GO:0045944 GO:GO:0006351
GO:GO:0003713 GO:GO:0001824 GO:GO:0016592 KO:K15152 EMBL:BC109636
IPI:IPI00711298 RefSeq:NP_001033655.1 UniGene:Bt.5469
ProteinModelPortal:Q2TBU8 STRING:Q2TBU8 Ensembl:ENSBTAT00000006696
GeneID:539496 KEGG:bta:539496 CTD:9412 eggNOG:NOG247021
GeneTree:ENSGT00390000014557 HOGENOM:HOG000006767
HOVERGEN:HBG009229 InParanoid:Q2TBU8 OMA:QAEHFCN OrthoDB:EOG4TF0MJ
NextBio:20878025 InterPro:IPR021384 Pfam:PF11221 Uniprot:Q2TBU8
Length = 144
Score = 311 (114.5 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 68/130 (52%), Positives = 89/130 (68%)
Query: 830 TPIQQLLSSAEQADNFCNSVGILQQTAIPSKFSGFDRGGSXXXXXXXXXEDYAHLFATLI 889
T +Q ++S AD FCN++G+LQQ P+ FS + E+YA LFA LI
Sbjct: 6 TQLQDAVNSL--ADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPT-EEYAQLFAALI 62
Query: 890 SRCARDIDALIESLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAAL 949
+R A+DID LI+SLP+E+ST LQ ASL KLE++N AA LED V RG++LLE+IQ+AL
Sbjct: 63 ARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATSLEDVVYRGDMLLEKIQSAL 122
Query: 950 TDIAQSQLET 959
DIAQSQL+T
Sbjct: 123 ADIAQSQLKT 132
>UNIPROTKB|E1C1C6 [details] [associations]
symbol:MED21 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0016592 "mediator complex" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
GO:GO:0045944 GO:GO:0003713 GO:GO:0016592 KO:K15152 CTD:9412
GeneTree:ENSGT00390000014557 OMA:QAEHFCN InterPro:IPR021384
Pfam:PF11221 EMBL:AADN02006681 EMBL:AADN02006682 IPI:IPI00591787
RefSeq:XP_416442.2 UniGene:Gga.5850 Ensembl:ENSGALT00000022811
GeneID:418216 KEGG:gga:418216 NextBio:20821416 Uniprot:E1C1C6
Length = 144
Score = 310 (114.2 bits), Expect = 1.6e-26, P = 1.6e-26
Identities = 67/130 (51%), Positives = 90/130 (69%)
Query: 830 TPIQQLLSSAEQADNFCNSVGILQQTAIPSKFSGFDRGGSXXXXXXXXXEDYAHLFATLI 889
T +Q ++S AD FCN++G+LQQ P+ FS + E+YA LFA LI
Sbjct: 6 TQLQDAVNSL--ADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPT-EEYAQLFAALI 62
Query: 890 SRCARDIDALIESLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAAL 949
+R A+DID LI+SLP+E+ST LQ ASL +LE++N AA RLE+ V RG++LLE+IQ+AL
Sbjct: 63 ARTAKDIDVLIDSLPSEESTAALQAASLYRLEEENHEAAARLEEVVYRGDMLLEKIQSAL 122
Query: 950 TDIAQSQLET 959
DIAQSQL+T
Sbjct: 123 ADIAQSQLKT 132
>UNIPROTKB|F1SG80 [details] [associations]
symbol:MED21 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
GO:GO:0045944 GO:GO:0003713 GO:GO:0001824 GO:GO:0016592 KO:K15152
CTD:9412 GeneTree:ENSGT00390000014557 OMA:QAEHFCN
InterPro:IPR021384 Pfam:PF11221 EMBL:CU928020 RefSeq:NP_001230459.1
UniGene:Ssc.48662 Ensembl:ENSSSCT00000000595 GeneID:100155076
KEGG:ssc:100155076 Uniprot:F1SG80
Length = 144
Score = 307 (113.1 bits), Expect = 3.3e-26, P = 3.3e-26
Identities = 68/130 (52%), Positives = 89/130 (68%)
Query: 830 TPIQQLLSSAEQADNFCNSVGILQQTAIPSKFSGFDRGGSXXXXXXXXXEDYAHLFATLI 889
T +Q ++S AD FCN++G+LQQ P+ FS + E+YA LFA LI
Sbjct: 6 TQLQDAVNSL--ADQFCNAIGVLQQCGPPASFSNIQTTINKDQPANPT-EEYAQLFAALI 62
Query: 890 SRCARDIDALIESLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAAL 949
+R A+DID LI+SLP+E+ST LQ ASL KLE++N AA LED V RG++LLE+IQ+AL
Sbjct: 63 ARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSAL 122
Query: 950 TDIAQSQLET 959
DIAQSQL+T
Sbjct: 123 ADIAQSQLKT 132
>UNIPROTKB|Q13503 [details] [associations]
symbol:MED21 "Mediator of RNA polymerase II transcription
subunit 21" species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001824 "blastocyst development"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=TAS]
Reactome:REACT_111045 GO:GO:0045944 GO:GO:0006351 GO:GO:0003713
EMBL:CH471094 GO:GO:0001824 GO:GO:0016592 GO:GO:0003899 KO:K15152
CTD:9412 eggNOG:NOG247021 HOGENOM:HOG000006767 HOVERGEN:HBG009229
OrthoDB:EOG4TF0MJ InterPro:IPR021384 Pfam:PF11221 EMBL:U46837
EMBL:U52960 EMBL:CR456999 EMBL:AK311838 EMBL:BC008380
IPI:IPI00013677 PIR:S68454 RefSeq:NP_004255.2 UniGene:Hs.286145
ProteinModelPortal:Q13503 SMR:Q13503 DIP:DIP-31471N IntAct:Q13503
STRING:Q13503 PhosphoSite:Q13503 DMDM:7531204 PaxDb:Q13503
PeptideAtlas:Q13503 PRIDE:Q13503 DNASU:9412 Ensembl:ENST00000282892
GeneID:9412 KEGG:hsa:9412 UCSC:uc001rhp.1 GeneCards:GC12P027175
HGNC:HGNC:11473 HPA:HPA017177 MIM:603800 neXtProt:NX_Q13503
PharmGKB:PA162395485 InParanoid:Q13503 PhylomeDB:Q13503
GenomeRNAi:9412 NextBio:35260 ArrayExpress:Q13503 Bgee:Q13503
CleanEx:HS_MED21 Genevestigator:Q13503 GermOnline:ENSG00000152944
Uniprot:Q13503
Length = 144
Score = 306 (112.8 bits), Expect = 4.2e-26, P = 4.2e-26
Identities = 67/130 (51%), Positives = 89/130 (68%)
Query: 830 TPIQQLLSSAEQADNFCNSVGILQQTAIPSKFSGFDRGGSXXXXXXXXXEDYAHLFATLI 889
T +Q ++S AD FCN++G+LQQ P+ F+ + E+YA LFA LI
Sbjct: 6 TQLQDAVNSL--ADQFCNAIGVLQQCGPPASFNNIQTAINKDQPANPT-EEYAQLFAALI 62
Query: 890 SRCARDIDALIESLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAAL 949
+R A+DID LI+SLP+E+ST LQ ASL KLE++N AA LED V RG++LLE+IQ+AL
Sbjct: 63 ARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSAL 122
Query: 950 TDIAQSQLET 959
DIAQSQL+T
Sbjct: 123 ADIAQSQLKT 132
>WB|WBGene00007704 [details] [associations]
symbol:mdt-21 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0007413 "axonal fasciculation" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] GO:GO:0005634 GO:GO:0040010
GO:GO:0006355 GO:GO:0040011 GO:GO:0006351 GO:GO:0007413 KO:K15152
GeneTree:ENSGT00390000014557 HOGENOM:HOG000006767
InterPro:IPR021384 Pfam:PF11221 EMBL:Z81475 RefSeq:NP_001021184.1
UniGene:Cel.25903 ProteinModelPortal:Q6BER6 IntAct:Q6BER6
STRING:Q6BER6 EnsemblMetazoa:C24H11.9 GeneID:3565572
KEGG:cel:CELE_C24H11.9 UCSC:C24H11.9 CTD:3565572 WormBase:C24H11.9
eggNOG:NOG239474 InParanoid:Q6BER6 OMA:MINEMAG NextBio:956991
Uniprot:Q6BER6
Length = 130
Score = 101 (40.6 bits), Expect = 0.00034, P = 0.00034
Identities = 32/131 (24%), Positives = 62/131 (47%)
Query: 830 TPIQQLLSSAEQADNFCNSVGILQQTAIPSKFSGFDRGGSXXXXXXXXXEDYAHLFATLI 889
T +Q +++ E A N++G+LQ TA P +F + E +FA I
Sbjct: 6 TQLQDMIN--EMAGLMTNAIGVLQATAPPCEFGAISQ--------ELEDEPNCAIFAAGI 55
Query: 890 SRCARDIDALIESLPNEDSTTELQLAS-LRKLEQDNQGAAERLEDTVRRGELLLEQIQAA 948
++ A++I+ LI+S P E E ++ + K ++ + L V L+ +Q
Sbjct: 56 AKAAKNIEILIDSFPIEAGNQEAEVEEKMIKNDEKQREKVNELVGLVGDSNRLVGVVQKK 115
Query: 949 LTDIAQSQLET 959
L +I+++Q+ +
Sbjct: 116 LAEISKTQMSS 126
>UNIPROTKB|Q6BER6 [details] [associations]
symbol:mdt-21 "Mediator of RNA polymerase II transcription
subunit 21" species:6239 "Caenorhabditis elegans" [GO:0005515
"protein binding" evidence=IPI] GO:GO:0005634 GO:GO:0040010
GO:GO:0006355 GO:GO:0040011 GO:GO:0006351 GO:GO:0007413 KO:K15152
GeneTree:ENSGT00390000014557 HOGENOM:HOG000006767
InterPro:IPR021384 Pfam:PF11221 EMBL:Z81475 RefSeq:NP_001021184.1
UniGene:Cel.25903 ProteinModelPortal:Q6BER6 IntAct:Q6BER6
STRING:Q6BER6 EnsemblMetazoa:C24H11.9 GeneID:3565572
KEGG:cel:CELE_C24H11.9 UCSC:C24H11.9 CTD:3565572 WormBase:C24H11.9
eggNOG:NOG239474 InParanoid:Q6BER6 OMA:MINEMAG NextBio:956991
Uniprot:Q6BER6
Length = 130
Score = 101 (40.6 bits), Expect = 0.00034, P = 0.00034
Identities = 32/131 (24%), Positives = 62/131 (47%)
Query: 830 TPIQQLLSSAEQADNFCNSVGILQQTAIPSKFSGFDRGGSXXXXXXXXXEDYAHLFATLI 889
T +Q +++ E A N++G+LQ TA P +F + E +FA I
Sbjct: 6 TQLQDMIN--EMAGLMTNAIGVLQATAPPCEFGAISQ--------ELEDEPNCAIFAAGI 55
Query: 890 SRCARDIDALIESLPNEDSTTELQLAS-LRKLEQDNQGAAERLEDTVRRGELLLEQIQAA 948
++ A++I+ LI+S P E E ++ + K ++ + L V L+ +Q
Sbjct: 56 AKAAKNIEILIDSFPIEAGNQEAEVEEKMIKNDEKQREKVNELVGLVGDSNRLVGVVQKK 115
Query: 949 LTDIAQSQLET 959
L +I+++Q+ +
Sbjct: 116 LAEISKTQMSS 126
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.131 0.373 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 962 920 0.00090 122 3 11 22 0.41 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 622 (66 KB)
Total size of DFA: 412 KB (2199 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 92.66u 0.09s 92.75t Elapsed: 00:01:10
Total cpu time: 92.66u 0.09s 92.75t Elapsed: 00:01:10
Start: Thu Aug 15 11:31:24 2013 End: Thu Aug 15 11:32:34 2013