BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16431
         (87 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WFI|A Chain A, Nuclear Move Domain Of Nuclear Distribution Gene C Homolog
          Length = 131

 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/43 (81%), Positives = 40/43 (93%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLV 43
           +EKINKMEWW++LVT+DPEINTKKINPE SKLSDLD ETR +V
Sbjct: 83  LEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMV 125


>pdb|3QOR|A Chain A, Crystal Structure Of Human Nuclear Migration Protein Nudc
 pdb|3QOR|B Chain B, Crystal Structure Of Human Nuclear Migration Protein Nudc
 pdb|3QOR|D Chain D, Crystal Structure Of Human Nuclear Migration Protein Nudc
 pdb|3QOR|E Chain E, Crystal Structure Of Human Nuclear Migration Protein Nudc
          Length = 121

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/30 (83%), Positives = 29/30 (96%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPS 30
           +EKINKMEWWS+LV++DPEINTKKINPE S
Sbjct: 92  LEKINKMEWWSRLVSSDPEINTKKINPENS 121


>pdb|3QOR|C Chain C, Crystal Structure Of Human Nuclear Migration Protein Nudc
          Length = 121

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/30 (83%), Positives = 29/30 (96%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPS 30
           +EKINKMEWWS+LV++DPEINTKKINPE S
Sbjct: 92  LEKINKMEWWSRLVSSDPEINTKKINPENS 121


>pdb|2CR0|A Chain A, Solution Structure Of Nuclear Move Domain Of Nuclear
           Distribution Gene C
          Length = 121

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/23 (82%), Positives = 23/23 (100%)

Query: 1   MEKINKMEWWSKLVTTDPEINTK 23
           +EKINKMEWW++LVT+DPEINTK
Sbjct: 93  LEKINKMEWWNRLVTSDPEINTK 115


>pdb|2O30|A Chain A, Nuclear Movement Protein From E. Cuniculi Gb-M1
 pdb|2O30|B Chain B, Nuclear Movement Protein From E. Cuniculi Gb-M1
          Length = 131

 Score = 32.7 bits (73), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 8   EWWSKLVTTDPEINTKKINP-EPSKLSDLDGETRGLVEKMMYDQRQKE 54
           EWW  L+     ++ +K+   + + +S LD E R +VEKMM++   K+
Sbjct: 82  EWWDSLLVGSESVDVQKLAENKHADMSMLDAEAREVVEKMMHNTSGKD 129


>pdb|2QNW|A Chain A, Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier
          Protein
          Length = 82

 Score = 25.8 bits (55), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 7  MEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQ 66
          +E    +V     ++  +INPE + + DLD ++   VE +M    +++ G+   DE+  +
Sbjct: 9  LERVKDVVADQLGVDRARINPESNFIKDLDADSLDSVELVM--AFEEKFGVSIPDEEASK 66


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.129    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,706,827
Number of Sequences: 62578
Number of extensions: 93712
Number of successful extensions: 246
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 240
Number of HSP's gapped (non-prelim): 9
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)