BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16431
(87 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZIN1|NUDC_CHICK Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1
Length = 341
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 75/86 (87%), Positives = 80/86 (93%)
Query: 1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
+EKINKMEWW+KLV+TDPEINTKKINPE SKLSDLD ETR +VEKMMYDQRQK MGLPTS
Sbjct: 255 LEKINKMEWWNKLVSTDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTS 314
Query: 61 DEQKKQDVLKKFMEQHPEMDFSNCKF 86
DEQKKQD+LKKFMEQHPEMDFS KF
Sbjct: 315 DEQKKQDILKKFMEQHPEMDFSKAKF 340
>sp|Q63525|NUDC_RAT Nuclear migration protein nudC OS=Rattus norvegicus GN=Nudc PE=1
SV=1
Length = 332
Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 72/86 (83%), Positives = 80/86 (93%)
Query: 1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
+EKINKMEWW++LVT+DPEINTKKINPE SKLSDLD ETR +VEKMMYDQRQK MGLPTS
Sbjct: 246 LEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTS 305
Query: 61 DEQKKQDVLKKFMEQHPEMDFSNCKF 86
DEQKKQ++LKKFM+QHPEMDFS KF
Sbjct: 306 DEQKKQEILKKFMDQHPEMDFSKAKF 331
>sp|O35685|NUDC_MOUSE Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1
Length = 332
Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 72/86 (83%), Positives = 80/86 (93%)
Query: 1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
+EKINKMEWW++LVT+DPEINTKKINPE SKLSDLD ETR +VEKMMYDQRQK MGLPTS
Sbjct: 246 LEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTS 305
Query: 61 DEQKKQDVLKKFMEQHPEMDFSNCKF 86
DEQKKQ++LKKFM+QHPEMDFS KF
Sbjct: 306 DEQKKQEILKKFMDQHPEMDFSKAKF 331
>sp|Q9Y266|NUDC_HUMAN Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1
Length = 331
Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 72/86 (83%), Positives = 80/86 (93%)
Query: 1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
+EKINKMEWWS+LV++DPEINTKKINPE SKLSDLD ETR +VEKMMYDQRQK MGLPTS
Sbjct: 245 LEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTS 304
Query: 61 DEQKKQDVLKKFMEQHPEMDFSNCKF 86
DEQKKQ++LKKFM+QHPEMDFS KF
Sbjct: 305 DEQKKQEILKKFMDQHPEMDFSKAKF 330
>sp|Q17QG2|NUDC_BOVIN Nuclear migration protein nudC OS=Bos taurus GN=NUDC PE=2 SV=1
Length = 332
Score = 155 bits (392), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 71/86 (82%), Positives = 80/86 (93%)
Query: 1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
+EKINKMEWWS+LV++DPEINTKKINPE SKLSDLD ETR +VEKMMYDQRQK MGLPTS
Sbjct: 246 LEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTS 305
Query: 61 DEQKKQDVLKKFMEQHPEMDFSNCKF 86
DEQKKQ++LKKFM+QHPEMDFS +F
Sbjct: 306 DEQKKQEILKKFMDQHPEMDFSKARF 331
>sp|P17624|NUDC_EMENI Nuclear movement protein nudC OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nudC
PE=3 SV=1
Length = 198
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 74/87 (85%)
Query: 1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
++K+N+MEWW+ +VTT P+I+ KI PE S LSDLDGETR +VEKMMYDQRQKEMG PTS
Sbjct: 112 LDKVNQMEWWAHVVTTAPKIDVSKITPENSSLSDLDGETRAMVEKMMYDQRQKEMGAPTS 171
Query: 61 DEQKKQDVLKKFMEQHPEMDFSNCKFG 87
DEQ+K D+LKKF ++HPEMDFSN K G
Sbjct: 172 DEQRKMDILKKFQKEHPEMDFSNAKIG 198
>sp|Q9LV09|BOB1_ARATH Protein BOBBER 1 OS=Arabidopsis thaliana GN=BOB1 PE=1 SV=1
Length = 304
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 70/86 (81%)
Query: 1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
+ K ++MEWW V +PEI+T+K+ PE SKL DLD ETR VEKMM+DQRQK+MGLPTS
Sbjct: 218 LTKSDQMEWWKCCVKGEPEIDTQKVEPETSKLGDLDPETRSTVEKMMFDQRQKQMGLPTS 277
Query: 61 DEQKKQDVLKKFMEQHPEMDFSNCKF 86
+E +KQ++LKKFM +HPEMDFSN KF
Sbjct: 278 EELQKQEILKKFMSEHPEMDFSNAKF 303
>sp|Q9STN7|BOB2_ARATH Protein BOBBER 2 OS=Arabidopsis thaliana GN=BOB2 PE=2 SV=1
Length = 293
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 68/86 (79%)
Query: 1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
+ K ++MEWW V +PEI+T+K+ PE SKL DLD ETR VEKMM+DQRQK+MGLP S
Sbjct: 207 LTKQDQMEWWKYCVKGEPEIDTQKVEPETSKLGDLDPETRASVEKMMFDQRQKQMGLPRS 266
Query: 61 DEQKKQDVLKKFMEQHPEMDFSNCKF 86
DE +K+D+LKKFM Q+P MDFSN KF
Sbjct: 267 DEIEKKDMLKKFMAQNPGMDFSNAKF 292
>sp|Q54M64|NUDC_DICDI Nuclear movement protein nudC OS=Dictyostelium discoideum GN=nudc
PE=3 SV=1
Length = 171
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 61/85 (71%)
Query: 3 KINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDE 62
K+ EWWS ++ + EI+ +I P+ S LSD DGETR +VEKM+Y+Q +K GLPT+DE
Sbjct: 87 KLKGQEWWSCIIQGESEIDVTQIKPQNSSLSDFDGETRAMVEKMLYNQNRKAQGLPTTDE 146
Query: 63 QKKQDVLKKFMEQHPEMDFSNCKFG 87
++KQ + + F +HP+MDFSN KF
Sbjct: 147 EEKQRIFETFKNEHPDMDFSNAKFN 171
>sp|O60166|NUDC_SCHPO Nuclear movement protein nudc OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=nudc PE=3 SV=1
Length = 166
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 61/85 (71%), Gaps = 5/85 (5%)
Query: 1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
+EK NKMEWWS ++ P I+ I PE SKLSDLD ETR VEKMM +Q QK +
Sbjct: 84 LEKSNKMEWWSCVIKGHPSIDIGSIEPENSKLSDLDEETRATVEKMMLEQSQKR-----T 138
Query: 61 DEQKKQDVLKKFMEQHPEMDFSNCK 85
DEQK++DVL+ FM+QHPE+DFSN +
Sbjct: 139 DEQKRKDVLQNFMKQHPELDFSNVR 163
>sp|Q8R1N4|NUDC3_MOUSE NudC domain-containing protein 3 OS=Mus musculus GN=Nudcd3 PE=2
SV=3
Length = 363
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 9 WWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQDV 68
WWS ++ + I+ KIN E S ++ +D E + +++++ +D QK G P S E K ++
Sbjct: 274 WWSAILEGEEPIDIDKINKERS-MATVDEEEQAVLDRLTFDYHQKLQGKPQSHELKVHEM 332
Query: 69 LKK 71
LKK
Sbjct: 333 LKK 335
>sp|Q8IVD9|NUDC3_HUMAN NudC domain-containing protein 3 OS=Homo sapiens GN=NUDCD3 PE=1
SV=3
Length = 361
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 9 WWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQDV 68
WW+ ++ + I+ KIN E S ++ +D E + +++++ +D QK G P S E K ++
Sbjct: 272 WWNAILEGEEPIDIDKINKERS-MATVDEEEQAVLDRLTFDYHQKLQGKPQSHELKVHEM 330
Query: 69 LKK 71
LKK
Sbjct: 331 LKK 333
>sp|Q5RB75|NUDC3_PONAB NudC domain-containing protein 3 OS=Pongo abelii GN=NUDCD3 PE=2
SV=1
Length = 361
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 9 WWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQDV 68
WW+ ++ + I+ KIN E S ++ +D E + +++++ +D QK G P S E K ++
Sbjct: 272 WWNAILEGEEPIDIDKINKERS-MATVDEEEQAVLDRLTFDYHQKLQGKPQSHELKVHEM 330
Query: 69 LKK 71
LKK
Sbjct: 331 LKK 333
>sp|O34163|ACP_TREHY Acyl carrier protein OS=Treponema hyodysenteriae GN=acpP PE=1
SV=1
Length = 78
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 24 KINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQDV--LKKFMEQH 76
KI S + DL+ ++ LVE +M +++ E+ +P D++K ++V K++E+H
Sbjct: 22 KITDTASFVDDLNADSLDLVELIMELEKRYEIKIPQEDQEKIKNVADAAKYIEEH 76
>sp|C0QYL1|ACP_BRAHW Acyl carrier protein OS=Brachyspira hyodysenteriae (strain ATCC
49526 / WA1) GN=acpP PE=3 SV=1
Length = 78
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 24 KINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQDV--LKKFMEQH 76
KI S + DL+ ++ LVE +M +++ E+ +P D++K ++V K++E+H
Sbjct: 22 KITDTASFVDDLNADSLDLVELIMELEKRYEIKIPQEDQEKIKNVADAAKYIEEH 76
>sp|Q9SY33|PER7_ARATH Peroxidase 7 OS=Arabidopsis thaliana GN=PER7 PE=2 SV=1
Length = 349
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 16 TDPEINTKKIN------PEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQD-- 67
+DP I+ K + S+ DLD T + + Y QK MG+ ++D++ +D
Sbjct: 236 SDPSIDAKYADYLQRRCRWASETVDLDPVTPAVFDNQYYINLQKHMGVLSTDQELVKDPR 295
Query: 68 ---VLKKFMEQHPEM 79
++K F EQ P++
Sbjct: 296 TAPLVKTFAEQSPQI 310
>sp|B1I2D2|ACP_DESAP Acyl carrier protein OS=Desulforudis audaxviator (strain MP104C)
GN=acpP PE=3 SV=1
Length = 77
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 6 KMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKK 65
K++ L+ ++ +++ PE S + DL ++ LVE +M + E+ +P D +K
Sbjct: 4 KLQKIQALIVEQLGVDEEEVTPEASFVDDLGADSLDLVELVMAFEEAFEIRIPDEDAEKI 63
Query: 66 QDV 68
+ V
Sbjct: 64 RTV 66
>sp|B3PI23|UBID_CELJU 3-octaprenyl-4-hydroxybenzoate carboxy-lyase OS=Cellvibrio
japonicus (strain Ueda107) GN=ubiD PE=3 SV=1
Length = 493
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 2 EKINKMEW----WSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYD-------Q 50
+ +N +W W+ DP +T ++ P D GL K+ +D +
Sbjct: 400 DDVNARDWKDVIWAMTTRMDPARDTVMVDNTPIDYLDFASPVSGLGSKIGFDATNKWPGE 459
Query: 51 RQKEMGLPTSDEQKKQDVLKKFME 74
Q+E G P + EQ +D + E
Sbjct: 460 TQREWGTPIAMEQAVKDRVDAIWE 483
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,095,196
Number of Sequences: 539616
Number of extensions: 1233410
Number of successful extensions: 3392
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3364
Number of HSP's gapped (non-prelim): 33
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)