Query psy16431
Match_columns 87
No_of_seqs 104 out of 243
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 21:09:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16431.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16431hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o30_A Nuclear movement protei 99.8 1E-20 3.5E-25 128.3 0.4 54 1-55 76-130 (131)
2 2rh0_A NUDC domain-containing 99.7 3.2E-18 1.1E-22 119.8 4.4 52 1-87 86-139 (157)
3 1wfi_A Nuclear distribution ge 99.6 8.1E-18 2.8E-22 113.6 -2.9 48 1-48 83-130 (131)
4 3qor_A Nuclear migration prote 98.8 9.3E-10 3.2E-14 73.5 2.0 30 1-30 92-121 (121)
5 1rl1_A Suppressor of G2 allele 98.0 7.8E-07 2.7E-11 57.6 0.6 31 1-32 84-114 (114)
6 1wgv_A KIAA1068 protein; CS do 97.5 4.5E-05 1.6E-09 50.4 2.0 23 6-28 101-123 (124)
7 1ejf_A Progesterone receptor P 94.0 0.025 8.7E-07 37.1 2.0 37 1-38 77-113 (125)
8 2cg9_X CO-chaperone protein SB 90.3 0.1 3.5E-06 34.8 1.5 37 1-38 93-130 (134)
9 1x5m_A Calcyclin-binding prote 67.4 0.55 1.9E-05 30.6 -1.5 19 1-19 99-117 (127)
10 2kmw_A Uncharacterized protein 61.7 3 0.0001 28.2 1.3 36 1-38 77-113 (150)
11 1ug7_A 2610208M17RIK protein; 47.1 29 0.00099 23.6 4.3 52 33-84 60-120 (128)
12 1zbd_B Rabphilin-3A; G protein 43.5 46 0.0016 22.0 4.9 22 31-52 6-27 (134)
13 3ga8_A HTH-type transcriptiona 38.6 33 0.0011 20.2 3.2 30 35-64 47-77 (78)
14 1p3q_Q VPS9P, vacuolar protein 38.3 33 0.0011 19.9 3.1 19 62-80 9-27 (54)
15 1v9x_A Poly (ADP-ribose) polym 35.0 26 0.00088 22.8 2.5 34 10-47 56-90 (114)
16 2oeq_A Protein of unknown func 33.5 75 0.0026 20.1 4.6 43 36-78 38-85 (122)
17 3o9x_A Uncharacterized HTH-typ 31.4 83 0.0028 19.4 4.4 32 35-66 47-79 (133)
18 2zet_C Melanophilin; complex, 30.9 1.2E+02 0.0042 20.4 6.2 20 30-49 12-31 (153)
19 1m0d_A Endonuclease, endodeoxy 30.1 37 0.0013 23.2 2.7 23 56-81 57-79 (138)
20 2qsx_A Putative transcriptiona 29.1 18 0.00062 23.3 1.0 18 64-81 33-50 (218)
21 3sjr_A Uncharacterized protein 25.6 26 0.0009 24.9 1.3 16 67-82 103-118 (175)
22 3odc_A Poly [ADP-ribose] polym 24.6 17 0.00057 23.6 0.1 34 10-47 57-96 (111)
23 3jv9_A OXYR, transcriptional r 23.2 37 0.0013 20.9 1.6 19 64-82 18-36 (219)
24 2kp6_A Uncharacterized protein 22.7 64 0.0022 20.2 2.6 20 53-77 16-35 (82)
25 2jpn_A DAR protein, ATP-depend 22.4 54 0.0019 20.5 2.2 24 47-70 39-62 (79)
26 2dmj_A Poly (ADP-ribose) polym 22.0 61 0.0021 20.5 2.5 17 31-47 80-96 (106)
27 1ghh_A DINI, DNA-damage-induci 20.5 98 0.0033 19.1 3.1 25 55-79 11-36 (81)
No 1
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}
Probab=99.78 E-value=1e-20 Score=128.25 Aligned_cols=54 Identities=31% Similarity=0.601 Sum_probs=12.0
Q ss_pred CccccccccccccccCCcccccccCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHc
Q psy16431 1 MEKINKMEWWSKLVTTDPEINTKKINPE-PSKLSDLDGETRGLVEKMMYDQRQKEM 55 (87)
Q Consensus 1 L~K~~~~~WW~~vl~GdpeID~~kI~~~-~~~l~dlD~etq~~veKmm~dq~qK~~ 55 (87)
|.|. ++.||++|++|+|+||+.+++|+ +++|+|||+|||++|+|||||||||+|
T Consensus 76 L~K~-~~~~W~~L~~~~~~id~~k~~~e~~~~l~dld~e~~~~v~k~~~d~~qk~~ 130 (131)
T 2o30_A 76 VTKK-RNEWWDSLLVGSESVDVQKLAENKHADMSMLDAEAREVVEKMMHNTSGKDS 130 (131)
T ss_dssp EEES-SCCCCSCSBC-----------------------------------------
T ss_pred EEEC-CCCCCccccCCCCCCCHhHcCcccccccccCCHHHHHHHHHHHHHHHHhhc
Confidence 5677 67999999999999999999999 888999999999999999999999987
No 2
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}
Probab=99.72 E-value=3.2e-18 Score=119.84 Aligned_cols=52 Identities=19% Similarity=0.484 Sum_probs=39.7
Q ss_pred Cccccc--cccccccccCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhCCC
Q psy16431 1 MEKINK--MEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQDVLKKFMEQHPE 78 (87)
Q Consensus 1 L~K~~~--~~WW~~vl~GdpeID~~kI~~~~~~l~dlD~etq~~veKmm~dq~qK~~G~ptsde~k~~e~Lkkf~~~~p~ 78 (87)
|.|.+. +.||++|++|+++|| ++| | |++++++||++|+++|||
T Consensus 86 L~K~~~~~~~~W~~L~k~~~~lD---------------~~t--------~------------d~~~k~~~L~~f~~~~p~ 130 (157)
T 2rh0_A 86 LTKTKRDAANCWTSLLESEYAAD---------------PWV--------Q------------DQMQRKLTLERFQKENPG 130 (157)
T ss_dssp EEBSSCSTTCCCSEEETTEEECC---------------HHH--------H------------HHHHHHHHHHHHHHHCTT
T ss_pred EEEcCCCcCCcChhhhcCCCCCC---------------hHH--------H------------HHHHHHHHHHHHHHHCCC
Confidence 568876 799999999999865 344 3 347889999999999999
Q ss_pred CCCCCCCCC
Q psy16431 79 MDFSNCKFG 87 (87)
Q Consensus 79 ~dfs~~~~~ 87 (87)
||||+|+||
T Consensus 131 ~Dfs~a~~~ 139 (157)
T 2rh0_A 131 FDFSGAEIS 139 (157)
T ss_dssp SCCC-----
T ss_pred CCchhhhhc
Confidence 999999997
No 3
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4
Probab=99.62 E-value=8.1e-18 Score=113.56 Aligned_cols=48 Identities=73% Similarity=1.102 Sum_probs=45.7
Q ss_pred CccccccccccccccCCcccccccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy16431 1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMY 48 (87)
Q Consensus 1 L~K~~~~~WW~~vl~GdpeID~~kI~~~~~~l~dlD~etq~~veKmm~ 48 (87)
|.|.+++.||++|++|+|+||+++|+|++++|+|||+|||++||||||
T Consensus 83 L~K~~~~~~W~~L~~~~~~id~~ki~pe~~~~~dld~e~r~~vekmm~ 130 (131)
T 1wfi_A 83 LEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVSGPSS 130 (131)
T ss_dssp EEBSSSCCCCSCSBSSCCSCCCSSSSCCCCSCCCCCCCCCCCCCCCCC
T ss_pred EEECCCCCCChhhhcCCCCCCccEecCCCCCcccCCHHHHHHHHHHhc
Confidence 578887789999999999999999999999999999999999999998
No 4
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A
Probab=98.83 E-value=9.3e-10 Score=73.47 Aligned_cols=30 Identities=83% Similarity=1.388 Sum_probs=27.2
Q ss_pred CccccccccccccccCCcccccccCCCCCC
Q psy16431 1 MEKINKMEWWSKLVTTDPEINTKKINPEPS 30 (87)
Q Consensus 1 L~K~~~~~WW~~vl~GdpeID~~kI~~~~~ 30 (87)
|+|.+++.||++|++|+|+||+++|+|++|
T Consensus 92 L~K~~~~~~W~~L~~~~~~id~~ki~pe~s 121 (121)
T 3qor_A 92 LEKINKMEWWSRLVSSDPEINTKKINPENS 121 (121)
T ss_dssp EEBSSSSCCCSCSBTTSCCBCGGGCCTTC-
T ss_pred EEECCCCCCChhhhcCCCCCccceeCCCCC
Confidence 578888899999999999999999999974
No 5
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=98.05 E-value=7.8e-07 Score=57.56 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=13.5
Q ss_pred CccccccccccccccCCcccccccCCCCCCCC
Q psy16431 1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKL 32 (87)
Q Consensus 1 L~K~~~~~WW~~vl~GdpeID~~kI~~~~~~l 32 (87)
|.|... .||++|.+++++||+++|+|++|+|
T Consensus 84 L~K~~~-~~W~~L~~~~~~~~~~~i~~~~~~~ 114 (114)
T 1rl1_A 84 LKKPEA-VRWEKLEGQGDVPTPKQFVADVKNL 114 (114)
T ss_dssp EECSSC-CCCSSSBTTC---------------
T ss_pred EEcCCC-CcCccccccCCccCCcccCCCcCCC
Confidence 467776 5999999999999999999998754
No 6
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Probab=97.46 E-value=4.5e-05 Score=50.44 Aligned_cols=23 Identities=13% Similarity=0.430 Sum_probs=21.0
Q ss_pred ccccccccccCCcccccccCCCC
Q psy16431 6 KMEWWSKLVTTDPEINTKKINPE 28 (87)
Q Consensus 6 ~~~WW~~vl~GdpeID~~kI~~~ 28 (87)
.+.||++|++|+++||+++|+|+
T Consensus 101 ~~~~W~~L~~~~~~id~~ki~~~ 123 (124)
T 1wgv_A 101 GEYWWNAILEGEEPIDIDSGPSS 123 (124)
T ss_dssp SSCCCSCSBTTSCCCSCCCSCCC
T ss_pred CCCCCcCcccCCCccChhhcCCC
Confidence 46899999999999999999975
No 7
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2
Probab=93.97 E-value=0.025 Score=37.12 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=26.5
Q ss_pred CccccccccccccccCCcccccccCCCCCCCCCCCCHH
Q psy16431 1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGE 38 (87)
Q Consensus 1 L~K~~~~~WW~~vl~GdpeID~~kI~~~~~~l~dlD~e 38 (87)
|.|.+.+.||++|+++++++.--+++..+ -.++-|++
T Consensus 77 L~K~~~~~~W~rL~~~~~K~~~lk~D~dk-w~de~dd~ 113 (125)
T 1ejf_A 77 LRKGESGQSWPRLTKERAKLNWLSVDFNN-WKDWEDDS 113 (125)
T ss_dssp EEESSTTCCCSSSBSSCCCCTTEEECTTT-CCCCC---
T ss_pred EEECCCCCCCCceecCCCccccccCChHH-hCCccccc
Confidence 56777668999999999998888888765 34444444
No 8
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=90.30 E-value=0.1 Score=34.77 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=27.4
Q ss_pred Ccccc-ccccccccccCCcccccccCCCCCCCCCCCCHH
Q psy16431 1 MEKIN-KMEWWSKLVTTDPEINTKKINPEPSKLSDLDGE 38 (87)
Q Consensus 1 L~K~~-~~~WW~~vl~GdpeID~~kI~~~~~~l~dlD~e 38 (87)
|.|.. ++.||++|+++++++.--+++..+ -.++.+++
T Consensus 93 L~K~~~~~~~W~rL~k~~~K~~~lk~D~dk-w~dEde~e 130 (134)
T 2cg9_X 93 LYKKDLESEYWPRLTKEKVKYPYIKTDFDK-WVDADEQD 130 (134)
T ss_dssp EEECSSSSCCCSCSSSSCCCCSSEEECTTT-CCCSSSSS
T ss_pred EEECCCCCCCCCceecCCCccCcccCCchh-cCCccccc
Confidence 45666 368999999999998888888765 35555443
No 9
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.41 E-value=0.55 Score=30.57 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=15.0
Q ss_pred CccccccccccccccCCcc
Q psy16431 1 MEKINKMEWWSKLVTTDPE 19 (87)
Q Consensus 1 L~K~~~~~WW~~vl~Gdpe 19 (87)
|.|.+.+.||++|..++.+
T Consensus 99 L~K~~~~~~W~~L~~~~~k 117 (127)
T 1x5m_A 99 CRKKVENTRWDYLTQVEKE 117 (127)
T ss_dssp EECSSSSCCCSSSBHHHHH
T ss_pred EEECCCCCCCCcccccccc
Confidence 5677776799999988765
No 10
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=61.67 E-value=3 Score=28.20 Aligned_cols=36 Identities=14% Similarity=0.411 Sum_probs=25.3
Q ss_pred CccccccccccccccCCcc-cccccCCCCCCCCCCCCHH
Q psy16431 1 MEKINKMEWWSKLVTTDPE-INTKKINPEPSKLSDLDGE 38 (87)
Q Consensus 1 L~K~~~~~WW~~vl~Gdpe-ID~~kI~~~~~~l~dlD~e 38 (87)
|.|... .||++|.++.++ +.--+++..+ -.++.+++
T Consensus 77 L~K~e~-~~W~rL~k~~~K~~~~lk~Dwdk-w~dedeee 113 (150)
T 2kmw_A 77 IQKEER-SWWTRLLKSEEKPAPYIKVDWNK-WCDEDEEV 113 (150)
T ss_dssp EEECCS-SCCSCSBSCCSSCCTTEEECSSS-SCCSSCCC
T ss_pred EEECCC-CcCcccccCCcccCccccccchh-cCCchhcc
Confidence 456654 799999999888 7777777765 34444433
No 11
>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} SCOP: a.24.24.1
Probab=47.06 E-value=29 Score=23.57 Aligned_cols=52 Identities=19% Similarity=0.313 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHH--HHHHHHHc------CCCCcHHHHH-HHHHHHHHHhCCCCCCCCC
Q psy16431 33 SDLDGETRGLVEKMM--YDQRQKEM------GLPTSDEQKK-QDVLKKFMEQHPEMDFSNC 84 (87)
Q Consensus 33 ~dlD~etq~~veKmm--~dq~qK~~------G~ptsde~k~-~e~Lkkf~~~~p~~dfs~~ 84 (87)
.+|.++.+..|.|+. -+.|-|.+ -..+.+++++ ..+|+.|-.-||+|.|+=.
T Consensus 60 ~~fte~qkk~i~KiatcL~lRsk~Lq~~~~~~gi~led~K~l~~~lk~ll~~~~eFP~dV~ 120 (128)
T 1ug7_A 60 SEFTEEQKKTIGKIATCLELRSAALQSTQSQEEFKLEDLKKLEPILKNILTYNKEFPFDVQ 120 (128)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHCCSCCCSCCSHHHHTHHHHHHTTTTCCSCCSSCCC
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcccCCCCCCccC
Confidence 456678888899876 68888877 1223455544 6789999999999999733
No 12
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=43.52 E-value=46 Score=22.04 Aligned_cols=22 Identities=14% Similarity=0.407 Sum_probs=16.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q psy16431 31 KLSDLDGETRGLVEKMMYDQRQ 52 (87)
Q Consensus 31 ~l~dlD~etq~~veKmm~dq~q 52 (87)
.||-|.+++|..|..+|.-+.+
T Consensus 6 dls~LteeE~~~Il~Vl~Rd~~ 27 (134)
T 1zbd_B 6 KQEELTDEEKEIINRVIARAEK 27 (134)
T ss_dssp --CCCCSSHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHhhHHH
Confidence 4778888999999999975554
No 13
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=38.56 E-value=33 Score=20.15 Aligned_cols=30 Identities=7% Similarity=-0.084 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHc-CCCCcHHHH
Q psy16431 35 LDGETRGLVEKMMYDQRQKEM-GLPTSDEQK 64 (87)
Q Consensus 35 lD~etq~~veKmm~dq~qK~~-G~ptsde~k 64 (87)
+++++-..++++|-+-+.+.- |+.++.+++
T Consensus 47 ~~~e~~~~~~~~~~~f~~~vd~~l~~~~~I~ 77 (78)
T 3ga8_A 47 MNKEESDAFMAQVKAFRASVNAETVAPEFIV 77 (78)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred ECHHHHHHHHHHHHHHHHHHhccCCChHHhh
Confidence 567888889999988777776 999998875
No 14
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=38.31 E-value=33 Score=19.85 Aligned_cols=19 Identities=32% Similarity=0.691 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhCCCCC
Q psy16431 62 EQKKQDVLKKFMEQHPEMD 80 (87)
Q Consensus 62 e~k~~e~Lkkf~~~~p~~d 80 (87)
..+..+.++.+++.+|+||
T Consensus 9 ~~e~~~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 9 ENERKDTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHHHcccCC
Confidence 3466778899999999998
No 15
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=34.99 E-value=26 Score=22.80 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=24.3
Q ss_pred ccccccCCcc-cccccCCCCCCCCCCCCHHHHHHHHHHH
Q psy16431 10 WSKLVTTDPE-INTKKINPEPSKLSDLDGETRGLVEKMM 47 (87)
Q Consensus 10 W~~vl~Gdpe-ID~~kI~~~~~~l~dlD~etq~~veKmm 47 (87)
|.|++.--.. .++..|+ .+++|..+-|..|.+++
T Consensus 56 ~~Cf~~~~~~i~~~~~I~----G~~~L~~eDQ~~I~~~i 90 (114)
T 1v9x_A 56 ASCILKKTKQIKSVDDVE----GIESLRWEDQQKIRKYV 90 (114)
T ss_dssp HHHHHTSSSCCSCGGGEE----TTTTSCHHHHHHHHHHH
T ss_pred ccccchhhccCCChHHCC----ChHHCCHHHHHHHHHHH
Confidence 6677765433 3455554 69999999999998876
No 16
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=33.47 E-value=75 Score=20.08 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHH---HHHHH-HHcCC-CCcHHHHHHHHHHHHHHhCCC
Q psy16431 36 DGETRGLVEKMM---YDQRQ-KEMGL-PTSDEQKKQDVLKKFMEQHPE 78 (87)
Q Consensus 36 D~etq~~veKmm---~dq~q-K~~G~-ptsde~k~~e~Lkkf~~~~p~ 78 (87)
|++.+..|.... ....+ ...|. |+.+..++..-|++-...||.
T Consensus 38 D~ea~~li~~F~~~q~~~q~~q~~G~~~~~e~~~~l~~l~~~l~~n~~ 85 (122)
T 2oeq_A 38 DETAYRMFANVRDIQLRLHEKQMRGAAILPDEIEQAQKAMALAQQNEK 85 (122)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTSHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCHH
Confidence 556777765543 22222 35684 888888888888877777774
No 17
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=31.44 E-value=83 Score=19.36 Aligned_cols=32 Identities=9% Similarity=-0.061 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHc-CCCCcHHHHHH
Q psy16431 35 LDGETRGLVEKMMYDQRQKEM-GLPTSDEQKKQ 66 (87)
Q Consensus 35 lD~etq~~veKmm~dq~qK~~-G~ptsde~k~~ 66 (87)
+|++....+.+.+++.+.+.. |+.++++++..
T Consensus 47 ~d~e~~~~~~~~~~e~~r~~~~~~~~~~~l~~~ 79 (133)
T 3o9x_A 47 MNKEESDAFMAQVKAFRASVNAETVAPEFIVKV 79 (133)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 567888888999999888888 99998887654
No 18
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=30.91 E-value=1.2e+02 Score=20.38 Aligned_cols=20 Identities=25% Similarity=0.149 Sum_probs=17.0
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q psy16431 30 SKLSDLDGETRGLVEKMMYD 49 (87)
Q Consensus 30 ~~l~dlD~etq~~veKmm~d 49 (87)
..|+-|.+++|..|..++.-
T Consensus 12 ~dLs~LteeEr~~Il~VL~R 31 (153)
T 2zet_C 12 LDLSTLTDEEAEHVWAVVQR 31 (153)
T ss_dssp CCCTTSCHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHh
Confidence 35899999999999999953
No 19
>1m0d_A Endonuclease, endodeoxyribonuclease I; holliday junction resolvase, homodimer, domain swapped, composite active site, hydrolase; 1.90A {Enterobacteria phage T7} SCOP: c.52.1.17 PDB: 1m0i_A 2pfj_A 1fzr_A 3cae_A
Probab=30.15 E-value=37 Score=23.25 Aligned_cols=23 Identities=52% Similarity=0.862 Sum_probs=16.2
Q ss_pred CCCCcHHHHHHHHHHHHHHhCCCCCC
Q psy16431 56 GLPTSDEQKKQDVLKKFMEQHPEMDF 81 (87)
Q Consensus 56 G~ptsde~k~~e~Lkkf~~~~p~~df 81 (87)
|.=++++..|+.+++ ++||++||
T Consensus 57 G~~~~~dR~K~k~ik---eq~P~ldi 79 (138)
T 1m0d_A 57 GLWESDDRKKHLLIR---EQHPELDI 79 (138)
T ss_dssp SSCCHHHHHHHHHHH---HHCTTCCE
T ss_pred ccCCHHHHHHHHHHH---HHCCCceE
Confidence 445667777775554 69999994
No 20
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=29.06 E-value=18 Score=23.33 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhCCCCCC
Q psy16431 64 KKQDVLKKFMEQHPEMDF 81 (87)
Q Consensus 64 k~~e~Lkkf~~~~p~~df 81 (87)
---.+|.+|..+||++++
T Consensus 33 ~L~~~l~~f~~~~P~i~l 50 (218)
T 2qsx_A 33 WLVPNINDFHQRHPNIRV 50 (218)
T ss_dssp THHHHHHHHHHHCTTCEE
T ss_pred HHHHHHHHHHHHCCCeEE
Confidence 345689999999999765
No 21
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=25.57 E-value=26 Score=24.88 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=13.4
Q ss_pred HHHHHHHHhCCCCCCC
Q psy16431 67 DVLKKFMEQHPEMDFS 82 (87)
Q Consensus 67 e~Lkkf~~~~p~~dfs 82 (87)
-++..++++||+|+|.
T Consensus 103 ~FF~~yq~qhPd~~~e 118 (175)
T 3sjr_A 103 ILMELYRQQHPDWTAP 118 (175)
T ss_dssp HHHHHHHHTCSSSCHH
T ss_pred HHHHHHHHhCCCCCHH
Confidence 4678999999999974
No 22
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=24.62 E-value=17 Score=23.63 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=24.3
Q ss_pred ccccccCC------cccccccCCCCCCCCCCCCHHHHHHHHHHH
Q psy16431 10 WSKLVTTD------PEINTKKINPEPSKLSDLDGETRGLVEKMM 47 (87)
Q Consensus 10 W~~vl~Gd------peID~~kI~~~~~~l~dlD~etq~~veKmm 47 (87)
|.|++..- +..++..|+ .+++|..+-|..|.+++
T Consensus 57 ~~Cf~~~~~~l~~~~~~~~~~I~----Gf~~L~~eDQe~Ikk~i 96 (111)
T 3odc_A 57 PGCFVKNREELGFRPEYSASQLK----GFSLLATEDKEALKKQL 96 (111)
T ss_dssp HHHHHHTHHHHTCCTTTGGGGEE----TGGGSCHHHHHHHHHHS
T ss_pred hhhccchhhhcccCCCCCHHhCC----ChHHCCHHHHHHHHHHH
Confidence 66666532 334556665 59999999999998866
No 23
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=23.16 E-value=37 Score=20.92 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhCCCCCCC
Q psy16431 64 KKQDVLKKFMEQHPEMDFS 82 (87)
Q Consensus 64 k~~e~Lkkf~~~~p~~dfs 82 (87)
--..+|.+|.++||++.++
T Consensus 18 ~l~~~l~~~~~~~P~i~i~ 36 (219)
T 3jv9_A 18 LLPKLIVSLRRTAPKMPLM 36 (219)
T ss_dssp HHHHHHHHHHHHSTTCCEE
T ss_pred HHHHHHHHHHHHCCCcEEE
Confidence 4456899999999998763
No 24
>2kp6_A Uncharacterized protein; unknown function, structural genomics, PSI-2, protein struct initiative; NMR {Chromobacterium violaceum}
Probab=22.66 E-value=64 Score=20.20 Aligned_cols=20 Identities=25% Similarity=0.795 Sum_probs=15.7
Q ss_pred HHcCCCCcHHHHHHHHHHHHHHhCC
Q psy16431 53 KEMGLPTSDEQKKQDVLKKFMEQHP 77 (87)
Q Consensus 53 K~~G~ptsde~k~~e~Lkkf~~~~p 77 (87)
.++|+|+|++- +.+|-+.||
T Consensus 16 ~QLGL~s~~~~-----I~~FI~~H~ 35 (82)
T 2kp6_A 16 RQLGLEDEPAA-----IRAFIDSHP 35 (82)
T ss_dssp HHHTSCCCHHH-----HHHHHHHSC
T ss_pred HHhCCCCCHHH-----HHHHHHhCC
Confidence 46999999864 577888886
No 25
>2jpn_A DAR protein, ATP-dependent DNA helicase UVSW; bacteriophage helicase, hydrolase; NMR {Enterobacteria phage T4}
Probab=22.42 E-value=54 Score=20.46 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=22.3
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHH
Q psy16431 47 MYDQRQKEMGLPTSDEQKKQDVLK 70 (87)
Q Consensus 47 m~dq~qK~~G~ptsde~k~~e~Lk 70 (87)
.|.+|-|...+..|+++..++.|.
T Consensus 39 yY~kR~KEv~i~~sdDIsiRDAl~ 62 (79)
T 2jpn_A 39 YYKKRVKETELKDTDDISVRDALA 62 (79)
T ss_dssp HHHHHTTTSCCTTHHHHHHHHHHH
T ss_pred HHHHhhhhccCCCcccchHHHHHc
Confidence 599999999999999999999984
No 26
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=21.96 E-value=61 Score=20.47 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=14.8
Q ss_pred CCCCCCHHHHHHHHHHH
Q psy16431 31 KLSDLDGETRGLVEKMM 47 (87)
Q Consensus 31 ~l~dlD~etq~~veKmm 47 (87)
.+++|..+-|..|++++
T Consensus 80 G~~~L~~eDq~~i~~~~ 96 (106)
T 2dmj_A 80 GFSELRWDDQQKVKKTA 96 (106)
T ss_dssp TTTTSCHHHHHHHHHHH
T ss_pred ChHHCCHHHHHHHHHHH
Confidence 58999999999998865
No 27
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=20.48 E-value=98 Score=19.06 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=20.0
Q ss_pred cCCC-CcHHHHHHHHHHHHHHhCCCC
Q psy16431 55 MGLP-TSDEQKKQDVLKKFMEQHPEM 79 (87)
Q Consensus 55 ~G~p-tsde~k~~e~Lkkf~~~~p~~ 79 (87)
.++| ..-+.-..|+.||+...+|.+
T Consensus 11 ~~lp~ga~~aL~~EL~kRl~~~fpd~ 36 (81)
T 1ghh_A 11 SPLPAGAIDALAGELSRRIQYAFPDN 36 (81)
T ss_dssp SCCCTTHHHHHHHHHHHHHHHHCSSS
T ss_pred CCCChhHHHHHHHHHHHHHHhhCCCC
Confidence 3666 455777889999999999987
Done!