RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16431
(87 letters)
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2,
structure initiative; 1.66A {Encephalitozoon cuniculi}
Length = 131
Score = 77.6 bits (191), Expect = 3e-20
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 5 NKMEWWSKLVTTDPEINTKKI-NPEPSKLSDLDGETRGLVEKMMYDQRQKE 54
+ EWW L+ ++ +K+ + + +S LD E R +VEKMM++ K+
Sbjct: 79 KRNEWWDSLLVGSESVDVQKLAENKHADMSMLDAEAREVVEKMMHNTSGKD 129
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transport protein; NMR {Mus musculus} SCOP:
b.15.1.4
Length = 131
Score = 68.8 bits (168), Expect = 8e-17
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLV 43
+EKINKMEWW++LVT+DPEINTKKINPE SKLSDLD ETR +V
Sbjct: 83 LEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMV 125
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein
cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B*
2cr0_A
Length = 121
Score = 51.9 bits (124), Expect = 2e-10
Identities = 25/30 (83%), Positives = 29/30 (96%)
Query: 1 MEKINKMEWWSKLVTTDPEINTKKINPEPS 30
+EKINKMEWWS+LV++DPEINTKKINPE S
Sbjct: 92 LEKINKMEWWSRLVSSDPEINTKKINPENS 121
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement
protein, structural genomics, joint center for
structural genomics, JCSG; 1.95A {Mus musculus}
Length = 157
Score = 48.5 bits (115), Expect = 7e-09
Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 35/84 (41%)
Query: 3 KINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDE 62
K + W+ L+ ++ + + DQ Q+++
Sbjct: 90 KRDAANCWTSLLESEYAA-----------------------DPWVQDQMQRKL------- 119
Query: 63 QKKQDVLKKFMEQHPEMDFSNCKF 86
L++F +++P DFS +
Sbjct: 120 -----TLERFQKENPGFDFSGAEI 138
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Length = 124
Score = 35.3 bits (81), Expect = 4e-04
Identities = 4/25 (16%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 1 MEKINKMEWWSKLVTTDPEINTKKI 25
+ K+ + WW+ ++ + I+
Sbjct: 97 LSKVGEY-WWNAILEGEEPIDIDSG 120
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 30.2 bits (68), Expect = 0.052
Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 2 EKINKMEWWSKLVTTDPE-----INTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMG 56
+ I+ E KL+ E + + N + +D ETR +V + + ++ +
Sbjct: 156 KDIDFNEIAKKLIEKSKEIPKFYVLEENKNKNNNISDKIDKETRKIVSEYIKSKKLDKDK 215
Query: 57 LPTSDEQKKQDVLKKFMEQHPEMDFSN 83
+ E +K+ K +++ E+D
Sbjct: 216 IKEVVELRKE--FLKKIKKMEEVDADR 240
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 27.3 bits (60), Expect = 0.69
Identities = 9/67 (13%), Positives = 23/67 (34%)
Query: 1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
++ + W + D I++ PS + E + +++Y+ Q
Sbjct: 16 PDRKAAVSHWQQQSYLDSGIHSGATTTAPSLSGKGNPEDDDVDNQVLYEWEQGFNQSFNQ 75
Query: 61 DEQKKQD 67
++ D
Sbjct: 76 EQVADID 82
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 2.6
Identities = 12/88 (13%), Positives = 31/88 (35%), Gaps = 25/88 (28%)
Query: 17 DPEINT-----KKINP--EPSKLSDLD-----GETRGLVEKMMYDQRQKEMGLPTSDEQ- 63
D E K I E + + + D + ++ K D + +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI---IMSKDAVSGT 64
Query: 64 ---------KKQDVLKKFMEQHPEMDFS 82
K++++++KF+E+ +++
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Score = 24.4 bits (52), Expect = 6.5
Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 16/74 (21%)
Query: 10 WSKLVTTDPEINTKKI--------NPEPSKLS--DLDGETRGLVE------KMMYDQRQK 53
W ++ +D + K+ P+ S +S + E + +E + + D
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 54 EMGLPTSDEQKKQD 67
+ D
Sbjct: 456 PKTFDSDDLIPPYL 469
>1gxs_A P-(S)-hydroxymandelonitrIle lyase chain A; inhibitor complex,
cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum
bicolor} SCOP: c.69.1.5
Length = 270
Score = 24.6 bits (54), Expect = 4.5
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 56 GLPTSDEQKKQDV---LKKFMEQHPE 78
L D++ QD L K+ E+ P
Sbjct: 121 DLSMGDDKMAQDTYTFLVKWFERFPH 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.129 0.378
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,314,907
Number of extensions: 61227
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 21
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.7 bits)