RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16431
         (87 letters)



>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 131

 Score = 65.3 bits (159), Expect = 7e-16
 Identities = 35/47 (74%), Positives = 40/47 (85%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMM 47
           +EKINKMEWW++LVT+DPEINTKKINPE SKLSDLD ETR +V    
Sbjct: 83  LEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVSGPS 129


>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3
           (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 124

 Score = 31.1 bits (70), Expect = 0.006
 Identities = 3/24 (12%), Positives = 8/24 (33%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKK 24
                   WW+ ++  +  I+   
Sbjct: 96  NLSKVGEYWWNAILEGEEPIDIDS 119


>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL
           {Escherichia coli [TaxId: 562]}
          Length = 218

 Score = 28.9 bits (64), Expect = 0.052
 Identities = 5/46 (10%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 39  TRGLVEKMMYD--QRQKEMGLPTSDEQKKQDVLKKFMEQHPEMDFS 82
           T   V  + Y+   R+K +    ++     +++++      ++  +
Sbjct: 145 TTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALARFDVTIN 190


>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 110

 Score = 28.1 bits (62), Expect = 0.073
 Identities = 4/26 (15%), Positives = 11/26 (42%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKIN 26
           + K    + W +L     ++N   ++
Sbjct: 77  LRKGESGQSWPRLTKERAKLNWLSVD 102


>d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395
          {Haemophilus influenzae [TaxId: 727]}
          Length = 77

 Score = 23.1 bits (50), Expect = 4.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 74 EQHPEMDFSNCKFG 87
           Q PE+D S  K G
Sbjct: 39 SQFPEIDLSTNKIG 52


>d1ouoa_ d.4.1.6 (A:) Periplasmic endonuclease Vvn {Vibrio
          vulnificus [TaxId: 672]}
          Length = 210

 Score = 23.0 bits (49), Expect = 6.5
 Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)

Query: 58 PTSDEQKKQDVLKKFMEQHPEMDFSNCKF 86
          P+S    KQ    K  + HP   +  C  
Sbjct: 3  PSSFSAAKQ-QAVKIYQDHPISFYCGCDI 30


>d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type
          protein CysB {Klebsiella aerogenes [TaxId: 28451]}
          Length = 237

 Score = 23.0 bits (48), Expect = 7.1
 Identities = 5/16 (31%), Positives = 10/16 (62%)

Query: 67 DVLKKFMEQHPEMDFS 82
           V+K F+E++P +   
Sbjct: 23 GVIKGFIERYPRVSLH 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.129    0.378 

Gapped
Lambda     K      H
   0.267   0.0405    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 337,133
Number of extensions: 12722
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 14
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)