BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16432
         (69 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CR0|A Chain A, Solution Structure Of Nuclear Move Domain Of Nuclear
          Distribution Gene C
          Length = 121

 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 39/55 (70%)

Query: 10 KKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEKI 64
          K +DV+     +H  + ++ Q P++DGEL +E+K+EES+W+ E+ K V +++EKI
Sbjct: 42 KGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLEKI 96


>pdb|1WFI|A Chain A, Nuclear Move Domain Of Nuclear Distribution Gene C
          Homolog
          Length = 131

 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 39/55 (70%)

Query: 10 KKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEKI 64
          K +DV+     +H  + ++ Q P++DGEL +E+K+EES+W+ E+ K V +++EKI
Sbjct: 32 KGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLEKI 86


>pdb|3QOR|C Chain C, Crystal Structure Of Human Nuclear Migration Protein
          Nudc
          Length = 121

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 36/55 (65%)

Query: 10 KKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEKI 64
          K +D++     +H  + ++ Q  IIDGEL +E+K+EES+W+  +   V +++EKI
Sbjct: 41 KGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIADGAVVTVHLEKI 95


>pdb|3QOR|A Chain A, Crystal Structure Of Human Nuclear Migration Protein
          Nudc
 pdb|3QOR|B Chain B, Crystal Structure Of Human Nuclear Migration Protein
          Nudc
 pdb|3QOR|D Chain D, Crystal Structure Of Human Nuclear Migration Protein
          Nudc
 pdb|3QOR|E Chain E, Crystal Structure Of Human Nuclear Migration Protein
          Nudc
          Length = 121

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 36/55 (65%)

Query: 10 KKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEKI 64
          K +D++     +H  + ++ Q  IIDGEL +E+K+EES+W+  +   V +++EKI
Sbjct: 41 KGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIADGAVVTVHLEKI 95


>pdb|1WGV|A Chain A, Solution Structure Of The Cs Domain Of Human Kiaa1068
           Protein
          Length = 124

 Score = 33.1 bits (74), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 33  IIDGELEHEIKLEESTWVFENAKTVMINMEKI 64
           +++G+L H+I  E S W  E  K V++N+ K+
Sbjct: 69  LMEGKLTHKINTESSLWSLEPGKCVLVNLSKV 100


>pdb|2RH0|A Chain A, Crystal Structure Of Nudc Domain-containing Protein 2
          (13542905) From Mus Musculus At 1.95 A Resolution
 pdb|2RH0|B Chain B, Crystal Structure Of Nudc Domain-containing Protein 2
          (13542905) From Mus Musculus At 1.95 A Resolution
 pdb|2RH0|C Chain C, Crystal Structure Of Nudc Domain-containing Protein 2
          (13542905) From Mus Musculus At 1.95 A Resolution
 pdb|2RH0|D Chain D, Crystal Structure Of Nudc Domain-containing Protein 2
          (13542905) From Mus Musculus At 1.95 A Resolution
          Length = 157

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 10 KKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEK 63
          + QD+      +H  +AV  +  I+ G+L      +E TW  E+ K V I + K
Sbjct: 36 RAQDIQCGLQSRHVALAVGGRE-ILKGKLFDSTIADEGTWTLEDRKXVRIVLTK 88


>pdb|2O30|A Chain A, Nuclear Movement Protein From E. Cuniculi Gb-M1
 pdb|2O30|B Chain B, Nuclear Movement Protein From E. Cuniculi Gb-M1
          Length = 131

 Score = 27.7 bits (60), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 25 MAVRHQTPI-IDGELEHEIKLEESTWVFENAKTVMINMEK 63
          + V++Q  I IDGEL HE+ +    WV  N   V +N+ K
Sbjct: 40 ICVKNQGEIVIDGELLHEVDVSSLWWVI-NGDVVDVNVTK 78


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.130    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,995,107
Number of Sequences: 62578
Number of extensions: 64195
Number of successful extensions: 130
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 8
length of query: 69
length of database: 14,973,337
effective HSP length: 39
effective length of query: 30
effective length of database: 12,532,795
effective search space: 375983850
effective search space used: 375983850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)