BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16432
(69 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q63525|NUDC_RAT Nuclear migration protein nudC OS=Rattus norvegicus GN=Nudc PE=1
SV=1
Length = 332
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 39/55 (70%)
Query: 10 KKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEKI 64
K +DV+ +H + ++ Q P+IDGEL +E+K+EES+W+ E+ K V +++EKI
Sbjct: 195 KGKDVVVDIQRRHLRVGLKGQAPVIDGELYNEVKVEESSWLIEDGKVVTVHLEKI 249
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/25 (88%), Positives = 25/25 (100%)
Query: 1 MGLPTSDEQKKQDVLKKFMEQHPEM 25
MGLPTSDEQKKQ++LKKFM+QHPEM
Sbjct: 300 MGLPTSDEQKKQEILKKFMDQHPEM 324
>sp|Q5ZIN1|NUDC_CHICK Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1
Length = 341
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/25 (96%), Positives = 25/25 (100%)
Query: 1 MGLPTSDEQKKQDVLKKFMEQHPEM 25
MGLPTSDEQKKQD+LKKFMEQHPEM
Sbjct: 309 MGLPTSDEQKKQDILKKFMEQHPEM 333
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 38/55 (69%)
Query: 10 KKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEKI 64
K +DV+ + + ++ P+IDGEL +E+K+EES+W+ E+ KTV +++EKI
Sbjct: 204 KGKDVVVDIQRRRLRVGLKGHPPVIDGELFNEVKVEESSWLIEDGKTVTVHLEKI 258
>sp|O35685|NUDC_MOUSE Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1
Length = 332
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 39/55 (70%)
Query: 10 KKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEKI 64
K +DV+ +H + ++ Q P++DGEL +E+K+EES+W+ E+ K V +++EKI
Sbjct: 195 KGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLEKI 249
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/25 (88%), Positives = 25/25 (100%)
Query: 1 MGLPTSDEQKKQDVLKKFMEQHPEM 25
MGLPTSDEQKKQ++LKKFM+QHPEM
Sbjct: 300 MGLPTSDEQKKQEILKKFMDQHPEM 324
>sp|Q17QG2|NUDC_BOVIN Nuclear migration protein nudC OS=Bos taurus GN=NUDC PE=2 SV=1
Length = 332
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/25 (88%), Positives = 25/25 (100%)
Query: 1 MGLPTSDEQKKQDVLKKFMEQHPEM 25
MGLPTSDEQKKQ++LKKFM+QHPEM
Sbjct: 300 MGLPTSDEQKKQEILKKFMDQHPEM 324
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 38/55 (69%)
Query: 10 KKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEKI 64
K +DV+ +H + ++ Q I+DGEL +E+K+EES+W+ E+ K V +++EKI
Sbjct: 195 KGKDVVVDIQRRHLRVGLKGQPAIVDGELYNEVKVEESSWLIEDGKVVTVHLEKI 249
>sp|Q9Y266|NUDC_HUMAN Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1
Length = 331
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/25 (88%), Positives = 25/25 (100%)
Query: 1 MGLPTSDEQKKQDVLKKFMEQHPEM 25
MGLPTSDEQKKQ++LKKFM+QHPEM
Sbjct: 299 MGLPTSDEQKKQEILKKFMDQHPEM 323
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 38/55 (69%)
Query: 10 KKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEKI 64
K +D++ +H + ++ Q IIDGEL +E+K+EES+W+ E+ K V +++EKI
Sbjct: 194 KGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKVVTVHLEKI 248
>sp|P17624|NUDC_EMENI Nuclear movement protein nudC OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nudC
PE=3 SV=1
Length = 198
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 22/25 (88%)
Query: 1 MGLPTSDEQKKQDVLKKFMEQHPEM 25
MG PTSDEQ+K D+LKKF ++HPEM
Sbjct: 166 MGAPTSDEQRKMDILKKFQKEHPEM 190
>sp|Q9LV09|BOB1_ARATH Protein BOBBER 1 OS=Arabidopsis thaliana GN=BOB1 PE=1 SV=1
Length = 304
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 23/25 (92%)
Query: 1 MGLPTSDEQKKQDVLKKFMEQHPEM 25
MGLPTS+E +KQ++LKKFM +HPEM
Sbjct: 272 MGLPTSEELQKQEILKKFMSEHPEM 296
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 1 MGLPTSDEQKKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMIN 60
+ +P K + V+ + + ++ ++ Q PI+DGEL +K ++ W E+ K + I
Sbjct: 158 VNIPVPTGTKARTVVCEIKKNRLKVGLKGQDPIVDGELYRSVKPDDCYWNIEDQKVISIL 217
Query: 61 MEK 63
+ K
Sbjct: 218 LTK 220
>sp|Q9STN7|BOB2_ARATH Protein BOBBER 2 OS=Arabidopsis thaliana GN=BOB2 PE=2 SV=1
Length = 293
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 1 MGLPTSDEQKKQDVLKKFMEQHPEM 25
MGLP SDE +K+D+LKKFM Q+P M
Sbjct: 261 MGLPRSDEIEKKDMLKKFMAQNPGM 285
>sp|O60166|NUDC_SCHPO Nuclear movement protein nudc OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=nudc PE=3 SV=1
Length = 166
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 19/20 (95%)
Query: 6 SDEQKKQDVLKKFMEQHPEM 25
+DEQK++DVL+ FM+QHPE+
Sbjct: 138 TDEQKRKDVLQNFMKQHPEL 157
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 33 IIDGELEHEIKLEESTWVFENAKTVMINMEK 63
++ G LE +I L+ESTW E + ++I++EK
Sbjct: 56 LLSGPLEKQINLDESTWTVEEQERLVIHLEK 86
>sp|Q5RB75|NUDC3_PONAB NudC domain-containing protein 3 OS=Pongo abelii GN=NUDCD3 PE=2
SV=1
Length = 361
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 33 IIDGELEHEIKLEESTWVFENAKTVMINMEKI 64
+++G+L H+I E S W E K V++N+ K+
Sbjct: 237 LMEGKLTHKINTESSLWSLEPGKCVLVNLSKV 268
>sp|Q54M64|NUDC_DICDI Nuclear movement protein nudC OS=Dictyostelium discoideum GN=nudc
PE=3 SV=1
Length = 171
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 2 GLPTSDEQKKQDVLKKFMEQHPEM 25
GLPT+DE++KQ + + F +HP+M
Sbjct: 140 GLPTTDEEEKQRIFETFKNEHPDM 163
>sp|Q8IVD9|NUDC3_HUMAN NudC domain-containing protein 3 OS=Homo sapiens GN=NUDCD3 PE=1
SV=3
Length = 361
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 33 IIDGELEHEIKLEESTWVFENAKTVMINMEKI 64
+++G+L H+I E S W E K V++N+ K+
Sbjct: 237 LMEGKLTHKINTESSLWSLEPGKCVLVNLSKV 268
>sp|Q28IB1|NUDC1_XENTR NudC domain-containing protein 1 OS=Xenopus tropicalis GN=nudcd1
PE=2 SV=1
Length = 586
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 30/53 (56%)
Query: 11 KQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEK 63
K+D+ KF+ +++++ Q + G+L +I E S W+ + ++V + + K
Sbjct: 301 KEDLTIKFLPGEIDISLKDQGTFLKGQLYLDIDCESSAWIIKEGRSVEVTLTK 353
>sp|Q8R1N4|NUDC3_MOUSE NudC domain-containing protein 3 OS=Mus musculus GN=Nudcd3 PE=2
SV=3
Length = 363
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 33 IIDGELEHEIKLEESTWVFENAKTVMINMEKI 64
+++G+L H+I E S W E + V++N+ K+
Sbjct: 239 LMEGKLTHKINTESSLWSLEPGRCVLVNLSKV 270
>sp|Q7T0S2|NUDC1_XENLA NudC domain-containing protein 1 OS=Xenopus laevis GN=nudcd1 PE=2
SV=1
Length = 586
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/55 (21%), Positives = 30/55 (54%)
Query: 9 QKKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEK 63
+ K+D+ KF+ +++++ Q + G+L ++ E S W+ + + V + + K
Sbjct: 299 KTKEDLNIKFLPGEIDISIKDQGTFLKGQLYSDVDCESSAWIMKEGRGVEVTLTK 353
>sp|Q1GYC1|LIPA_METFK Lipoyl synthase OS=Methylobacillus flagellatus (strain KT / ATCC
51484 / DSM 6875) GN=lipA PE=3 SV=1
Length = 325
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 4 PTSDEQKKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEI 42
P SD Q D+LK+F + HPE+ + + GE + EI
Sbjct: 210 PGSDYQNSLDLLKEFGKLHPEVPTKSGLMLGLGETDEEI 248
>sp|A3QH60|LIPA_SHELP Lipoyl synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4)
GN=lipA PE=3 SV=1
Length = 321
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 4 PTSDEQKKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEI 42
P ++ Q D+LKKF EQHP + + + GE EI
Sbjct: 207 PGANYQWSLDLLKKFKEQHPHIPTKSGLMMGLGETNEEI 245
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,754,987
Number of Sequences: 539616
Number of extensions: 848737
Number of successful extensions: 2435
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2395
Number of HSP's gapped (non-prelim): 43
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)