Query psy16432
Match_columns 69
No_of_seqs 106 out of 414
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 21:10:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06492 p23_mNUDC_like p23-lik 99.9 1.4E-24 3E-29 130.3 7.4 64 3-66 14-79 (87)
2 cd06495 p23_NUDCD3_like p23-li 99.9 5.3E-24 1.1E-28 131.5 7.4 66 3-68 20-89 (102)
3 cd06494 p23_NUDCD2_like p23-li 99.9 5.1E-23 1.1E-27 125.1 7.1 64 3-67 21-84 (93)
4 KOG2265|consensus 99.8 2E-21 4.3E-26 129.7 5.2 63 3-65 34-97 (179)
5 cd06493 p23_NUDCD1_like p23_NU 99.8 1.5E-20 3.3E-25 111.3 7.4 67 3-69 14-82 (85)
6 cd06467 p23_NUDC_like p23_like 99.7 1.5E-16 3.3E-21 92.8 7.9 67 3-69 14-82 (85)
7 PF04969 CS: CS domain; Inter 99.4 8.2E-13 1.8E-17 74.8 6.5 60 3-63 16-79 (79)
8 cd06463 p23_like Proteins cont 99.3 4.6E-12 9.9E-17 72.0 6.5 64 3-68 12-80 (84)
9 cd06469 p23_DYX1C1_like p23_li 99.3 4.8E-12 1.1E-16 72.6 5.8 62 3-68 12-74 (78)
10 cd06466 p23_CS_SGT1_like p23_l 99.3 9.3E-12 2E-16 72.0 5.6 63 4-68 14-80 (84)
11 cd06465 p23_hB-ind1_like p23_l 99.3 1.6E-11 3.6E-16 75.0 5.7 61 3-67 16-81 (108)
12 cd06468 p23_CacyBP p23_like do 99.2 3.5E-11 7.6E-16 71.2 6.5 64 3-67 17-86 (92)
13 cd06489 p23_CS_hSgt1_like p23_ 99.0 2.8E-09 6.1E-14 62.3 6.2 61 7-68 16-80 (84)
14 cd06488 p23_melusin_like p23_l 98.4 1.3E-06 2.8E-11 51.7 6.5 60 8-68 20-83 (87)
15 cd00298 ACD_sHsps_p23-like Thi 98.4 8E-07 1.7E-11 48.7 4.5 58 4-63 13-80 (80)
16 cd00237 p23 p23 binds heat sho 98.3 4E-06 8.7E-11 51.8 5.9 57 11-68 22-83 (106)
17 KOG4379|consensus 97.9 9.8E-06 2.1E-10 61.5 3.7 64 3-67 305-368 (596)
18 PLN03088 SGT1, suppressor of 97.4 0.00041 8.9E-09 49.9 5.9 60 8-68 176-239 (356)
19 KOG1309|consensus 97.0 0.0009 1.9E-08 45.6 3.6 58 7-65 22-82 (196)
20 PF00011 HSP20: Hsp20/alpha cr 96.3 0.015 3.3E-07 34.3 5.2 61 4-66 14-90 (102)
21 cd06490 p23_NCB5OR p23_like do 96.2 0.029 6.3E-07 33.1 6.1 57 10-68 22-83 (87)
22 cd06471 ACD_LpsHSP_like Group 95.7 0.02 4.4E-07 33.5 3.7 57 4-63 17-93 (93)
23 cd06464 ACD_sHsps-like Alpha-c 95.3 0.056 1.2E-06 30.4 4.5 55 8-63 17-88 (88)
24 cd06472 ACD_ScHsp26_like Alpha 95.2 0.047 1E-06 32.1 4.2 55 8-63 19-92 (92)
25 COG0071 IbpA Molecular chapero 93.8 0.24 5.3E-06 31.5 5.4 59 7-66 59-135 (146)
26 cd06498 ACD_alphaB-crystallin_ 92.9 0.29 6.2E-06 28.7 4.2 56 7-63 16-83 (84)
27 cd06470 ACD_IbpA-B_like Alpha- 92.6 0.71 1.5E-05 27.0 5.8 56 4-63 18-90 (90)
28 PF08190 PIH1: pre-RNA process 92.5 0.48 1E-05 33.1 5.6 58 3-61 267-326 (328)
29 cd06497 ACD_alphaA-crystallin_ 92.1 0.32 6.9E-06 28.6 3.7 56 7-63 19-86 (86)
30 cd06478 ACD_HspB4-5-6 Alpha-cr 92.0 0.33 7.1E-06 28.3 3.7 58 4-63 14-83 (83)
31 cd06476 ACD_HspB2_like Alpha c 91.9 0.4 8.8E-06 28.1 4.1 56 7-63 16-83 (83)
32 cd06479 ACD_HspB7_like Alpha c 91.2 0.42 9E-06 28.1 3.6 56 5-62 16-80 (81)
33 cd06526 metazoan_ACD Alpha-cry 90.0 0.64 1.4E-05 26.7 3.6 60 3-63 13-83 (83)
34 PRK11597 heat shock chaperone 88.9 1.2 2.6E-05 28.8 4.6 54 8-64 53-122 (142)
35 cd06481 ACD_HspB9_like Alpha c 86.6 1.5 3.2E-05 25.8 3.7 54 7-61 16-85 (87)
36 KOG3260|consensus 86.5 1.2 2.5E-05 30.9 3.6 60 8-68 94-158 (224)
37 PRK10743 heat shock protein Ib 86.0 2.3 4.9E-05 27.2 4.6 54 8-64 55-124 (137)
38 cd06475 ACD_HspB1_like Alpha c 82.4 3.1 6.6E-05 24.3 3.8 54 7-61 19-84 (86)
39 PF05455 GvpH: GvpH; InterPro 82.1 7.2 0.00016 26.4 5.9 55 8-66 112-170 (177)
40 KOG3158|consensus 81.3 2.4 5.2E-05 28.8 3.4 55 11-66 28-86 (180)
41 COG3354 FlaG Putative archaeal 80.1 5.1 0.00011 26.6 4.5 45 15-61 83-128 (154)
42 cd06477 ACD_HspB3_Like Alpha c 79.7 6.8 0.00015 23.0 4.6 53 7-60 16-80 (83)
43 PF08198 Thymopoietin: Thymopo 76.0 0.31 6.7E-06 26.6 -1.7 24 1-24 22-45 (49)
44 cd06482 ACD_HspB10 Alpha cryst 71.5 16 0.00035 21.6 4.8 55 5-60 16-84 (87)
45 cd06480 ACD_HspB8_like Alpha-c 68.6 13 0.00028 22.3 4.0 53 8-61 25-89 (91)
46 KOG1667|consensus 65.5 19 0.00041 26.2 4.9 50 16-66 242-295 (320)
47 smart00042 CUB Domain first fo 60.1 16 0.00034 20.5 3.1 20 44-63 15-36 (102)
48 cd00041 CUB CUB domain; extrac 52.1 24 0.00053 19.8 3.1 21 43-63 24-46 (113)
49 PF00431 CUB: CUB domain CUB d 49.6 26 0.00057 19.6 2.9 20 44-63 24-45 (110)
50 KOG1757|consensus 43.0 11 0.00025 24.1 0.7 23 9-31 75-98 (131)
51 PHA03324 nuclear egress membra 41.7 46 0.001 23.7 3.6 47 18-67 68-114 (274)
52 COG1862 YajC Preprotein transl 41.6 48 0.001 20.2 3.3 37 28-64 46-83 (97)
53 COG5091 SGT1 Suppressor of G2 41.3 7.7 0.00017 28.6 -0.3 57 9-66 197-257 (368)
54 PF02767 DNA_pol3_beta_2: DNA 32.7 65 0.0014 19.2 2.9 30 11-40 84-116 (116)
55 COG1869 RbsD ABC-type ribose t 32.2 35 0.00076 22.2 1.7 17 1-17 29-45 (135)
56 PF11869 DUF3389: Protein of u 31.5 1.1E+02 0.0024 18.0 3.6 44 9-52 12-56 (75)
57 PF08977 BOFC_N: Bypass of For 31.3 12 0.00026 20.5 -0.5 22 31-53 7-28 (51)
58 PF13670 PepSY_2: Peptidase pr 30.5 1.1E+02 0.0023 17.3 3.4 26 40-65 46-76 (83)
59 TIGR00739 yajC preprotein tran 29.2 1.2E+02 0.0026 17.7 3.6 36 28-63 40-76 (84)
60 PF07177 Neuralized: Neuralize 29.2 65 0.0014 18.1 2.3 18 52-69 40-57 (69)
61 PF09211 DUF1958: Domain of un 28.2 1.1E+02 0.0023 17.5 3.1 33 27-60 12-46 (65)
62 KOG3591|consensus 26.7 52 0.0011 21.9 1.8 27 38-64 123-149 (173)
63 PF08141 SspH: Small acid-solu 25.7 64 0.0014 17.9 1.8 18 19-36 12-29 (58)
64 TIGR01399 hrcV type III secret 24.5 52 0.0011 26.5 1.7 35 1-38 380-414 (677)
65 PRK15337 type III secretion sy 24.0 57 0.0012 26.4 1.9 35 1-38 392-426 (686)
66 PHA03323 nuclear egress membra 23.9 1.2E+02 0.0026 21.9 3.3 34 21-54 78-111 (272)
67 TIGR01398 FlhA flagellar biosy 23.8 57 0.0012 26.3 1.8 35 1-38 382-416 (678)
68 PRK12720 secretion system appa 23.6 56 0.0012 26.4 1.8 35 1-38 380-414 (675)
69 PF13464 DUF4115: Domain of un 23.2 1.5E+02 0.0032 16.4 4.9 38 19-62 7-45 (77)
70 PF10057 DUF2294: Uncharacteri 23.0 1.1E+02 0.0024 18.6 2.7 22 9-30 26-47 (118)
71 PRK12792 flhA flagellar biosyn 22.5 65 0.0014 26.1 1.9 35 1-38 396-430 (694)
72 TIGR02861 SASP_H small acid-so 21.8 82 0.0018 17.5 1.8 18 19-36 12-29 (58)
73 PRK01625 sspH acid-soluble spo 21.5 85 0.0018 17.6 1.8 18 19-36 12-29 (59)
74 PF13757 VIT_2: Vault protein 20.7 1.1E+02 0.0024 17.9 2.3 28 3-30 50-77 (78)
75 PF13785 DUF4178: Domain of un 20.6 2.1E+02 0.0046 17.2 5.0 52 15-67 74-127 (140)
76 PF06594 HCBP_related: Haemoly 20.2 1.2E+02 0.0025 15.2 2.0 11 42-52 31-41 (43)
77 PF11324 DUF3126: Protein of u 20.2 1.1E+02 0.0023 17.4 2.1 30 17-46 12-46 (63)
78 cd04977 Ig1_NCAM-1_like First 20.1 1.6E+02 0.0035 16.5 2.9 37 15-54 2-38 (92)
No 1
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.91 E-value=1.4e-24 Score=130.26 Aligned_cols=64 Identities=41% Similarity=0.691 Sum_probs=60.0
Q ss_pred CCCCcc--cccceeEEEeccCceEEEecccceEEeCccccceeeCcceEEEeCCcEEEEEEEEccc
Q psy16432 3 LPTSDE--QKKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEKILS 66 (69)
Q Consensus 3 ipvp~~--~~~kdv~v~i~~~~l~v~vkg~~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~~~ 66 (69)
+|+|++ +++||++|+|++++|+|+++|++++|+|+||++|++|+|+|++|||+.|+|+|+|+++
T Consensus 14 v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K~~~ 79 (87)
T cd06492 14 VPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKINK 79 (87)
T ss_pred EECCCCCCccceEEEEEEecCEEEEEECCCceEEeCcccCcccccccEEEEeCCCEEEEEEEECCC
Confidence 577776 8999999999999999999998789999999999999999999999899999999964
No 2
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.90 E-value=5.3e-24 Score=131.50 Aligned_cols=66 Identities=24% Similarity=0.517 Sum_probs=61.0
Q ss_pred CCCCcc-cccceeEEEeccCceEEEecc---cceEEeCccccceeeCcceEEEeCCcEEEEEEEEccccC
Q psy16432 3 LPTSDE-QKKQDVLKKFMEQHPEMAVRH---QTPIIDGELEHEIKLEESTWVFENAKTVMINMEKILSLF 68 (69)
Q Consensus 3 ipvp~~-~~~kdv~v~i~~~~l~v~vkg---~~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~~~~~ 68 (69)
+|+|++ +++|||.|+|++++|+|++++ ++++|+|+||++|++|||+||||||+.|+|+|+|+++.|
T Consensus 20 i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~L~K~~~~w 89 (102)
T cd06495 20 VPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLSLSKCSEVW 89 (102)
T ss_pred EECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEEEeCCCEEEEEEEECCCcc
Confidence 789998 579999999999999999984 358999999999999999999999988999999998874
No 3
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.89 E-value=5.1e-23 Score=125.14 Aligned_cols=64 Identities=23% Similarity=0.354 Sum_probs=60.2
Q ss_pred CCCCcccccceeEEEeccCceEEEecccceEEeCccccceeeCcceEEEeCCcEEEEEEEEcccc
Q psy16432 3 LPTSDEQKKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEKILSL 67 (69)
Q Consensus 3 ipvp~~~~~kdv~v~i~~~~l~v~vkg~~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~~~~ 67 (69)
+|+|++++++|+.|+|++++|+|+++|+ ++|+|+|+++|++|+|+|+|||++.|+|+|+|++++
T Consensus 21 i~lp~~~~~kdv~V~i~~~~l~V~~~g~-~~l~G~L~~~I~~destWtled~k~l~I~L~K~~~~ 84 (93)
T cd06494 21 VNVPPGTRAKDVKCKLGSRDISLAVKGQ-EVLKGKLFDSVVADECTWTLEDRKLIRIVLTKSNRD 84 (93)
T ss_pred EECCCCCceeeEEEEEEcCEEEEEECCE-EEEcCcccCccCcccCEEEEECCcEEEEEEEeCCCC
Confidence 6899999999999999999999999997 599999999999999999999997789999998644
No 4
>KOG2265|consensus
Probab=99.84 E-value=2e-21 Score=129.70 Aligned_cols=63 Identities=35% Similarity=0.651 Sum_probs=61.2
Q ss_pred CCCCccc-ccceeEEEeccCceEEEecccceEEeCccccceeeCcceEEEeCCcEEEEEEEEcc
Q psy16432 3 LPTSDEQ-KKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEKIL 65 (69)
Q Consensus 3 ipvp~~~-~~kdv~v~i~~~~l~v~vkg~~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~~ 65 (69)
||||+++ ++++|.|.|.++||+|+++|+++||+|+|+++|++|+|+|||||++.+.++|+|.+
T Consensus 34 i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~ildG~L~~~vk~des~WtiEd~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 34 IPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPILDGELSHSVKVDESTWTIEDGKMIVILLKKSN 97 (179)
T ss_pred eecCCCCcccceEEEEeeeeEEEEecCCCCceecCccccccccccceEEecCCEEEEEEeeccc
Confidence 7999999 99999999999999999999989999999999999999999999999999999988
No 5
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.83 E-value=1.5e-20 Score=111.27 Aligned_cols=67 Identities=25% Similarity=0.547 Sum_probs=62.0
Q ss_pred CCCCcccccceeEEEeccCceEEEecccceEEeCccccceeeCcceEEEeCCcEEEEEEEEccc--cCC
Q psy16432 3 LPTSDEQKKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEKILS--LFS 69 (69)
Q Consensus 3 ipvp~~~~~kdv~v~i~~~~l~v~vkg~~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~~~--~~~ 69 (69)
+++|++++++|++|+|++++|.|++++++++++|+|++.|++|+|+|++++++.|+|+|.|+++ .|+
T Consensus 14 i~~p~~~~~~dv~v~~~~~~l~v~~~~~~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~~~~~W~ 82 (85)
T cd06493 14 IRLPEDTTKEDIRIKFLPDHISIALKDQAPLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDEGPTWP 82 (85)
T ss_pred EECCCCCChhhEEEEEecCEEEEEeCCCCeEEeCcccCcccccCcEEEEeCCCEEEEEEEECCCCcccc
Confidence 6899999999999999999999999876689999999999999999999998889999999985 563
No 6
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.69 E-value=1.5e-16 Score=92.79 Aligned_cols=67 Identities=31% Similarity=0.593 Sum_probs=61.0
Q ss_pred CCCCcccccceeEEEeccCceEEEecccceEEeCccccceeeCcceEEEeCCcEEEEEEEEccc--cCC
Q psy16432 3 LPTSDEQKKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEKILS--LFS 69 (69)
Q Consensus 3 ipvp~~~~~kdv~v~i~~~~l~v~vkg~~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~~~--~~~ 69 (69)
+++|++++++|+.|+|++++|.|.+++.+++++|+|+++|++|+|+|++++++.++|+|.|+++ .|.
T Consensus 14 i~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~~~~W~ 82 (85)
T cd06467 14 IPLPEGTKSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNEGEWWP 82 (85)
T ss_pred EECCCCCcceeEEEEEEcCEEEEEECCCCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCCCcccc
Confidence 5789999999999999999999999966689999999999999999999994579999999986 563
No 7
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.42 E-value=8.2e-13 Score=74.79 Aligned_cols=60 Identities=27% Similarity=0.519 Sum_probs=51.2
Q ss_pred CCC-CcccccceeEEEeccCceEEEec-c--cceEEeCccccceeeCcceEEEeCCcEEEEEEEE
Q psy16432 3 LPT-SDEQKKQDVLKKFMEQHPEMAVR-H--QTPIIDGELEHEIKLEESTWVFENAKTVMINMEK 63 (69)
Q Consensus 3 ipv-p~~~~~kdv~v~i~~~~l~v~vk-g--~~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K 63 (69)
+++ |..++++|+.|+|++++|.+.++ + .+.+++++|+++|++++|+|+++++ .|+|+|.|
T Consensus 16 i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~-~i~i~L~K 79 (79)
T PF04969_consen 16 IPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDN-KIEITLKK 79 (79)
T ss_dssp EE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETT-EEEEEEEB
T ss_pred EEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECC-EEEEEEEC
Confidence 456 44578999999999999999986 2 3679999999999999999999997 79999987
No 8
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.35 E-value=4.6e-12 Score=71.97 Aligned_cols=64 Identities=28% Similarity=0.480 Sum_probs=56.0
Q ss_pred CCCCcccccceeEEEeccCceEEEecc---cceEEeCccccceeeCcceEEEeCCcEEEEEEEEccc--cC
Q psy16432 3 LPTSDEQKKQDVLKKFMEQHPEMAVRH---QTPIIDGELEHEIKLEESTWVFENAKTVMINMEKILS--LF 68 (69)
Q Consensus 3 ipvp~~~~~kdv~v~i~~~~l~v~vkg---~~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~~~--~~ 68 (69)
+++|... ++++.|+++++++.+.+++ .+..++++|+++|++|+|+|+++++ .|+|.|.|+++ .|
T Consensus 12 v~~~~~~-~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~-~l~i~L~K~~~~~~W 80 (84)
T cd06463 12 IPLKDVT-KKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDR-KIEITLKKKEPGEWW 80 (84)
T ss_pred EEcCCCC-ccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCC-EEEEEEEECCCCCCC
Confidence 4567554 8999999999999999975 4679999999999999999999986 79999999885 55
No 9
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.32 E-value=4.8e-12 Score=72.61 Aligned_cols=62 Identities=15% Similarity=0.094 Sum_probs=53.9
Q ss_pred CCCCcccccceeEEEeccCceEEEecccceEEeCccccceeeCcceEEEeCCcEEEEEEEEcccc-C
Q psy16432 3 LPTSDEQKKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEKILSL-F 68 (69)
Q Consensus 3 ipvp~~~~~kdv~v~i~~~~l~v~vkg~~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~~~~-~ 68 (69)
+.+| ++++.++.|++++++|++.. .+..++++|++.|++|+|+|++++| .|+|+|.|+++. |
T Consensus 12 i~~p-~v~~~~v~v~~~~~~l~i~~--~~~~~~~~l~~~I~~e~~~~~~~~~-~l~i~L~K~~~~~W 74 (78)
T cd06469 12 VPLK-GVKTSKVDIFCSDLYLKVNF--PPYLFELDLAAPIDDEKSSAKIGNG-VLVFTLVKKEPGIW 74 (78)
T ss_pred EEeC-CCccccceEEEecCEEEEcC--CCEEEEEeCcccccccccEEEEeCC-EEEEEEEeCCCCcc
Confidence 4567 68899999999999988866 4468999999999999999999997 699999998754 5
No 10
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.28 E-value=9.3e-12 Score=72.05 Aligned_cols=63 Identities=21% Similarity=0.161 Sum_probs=54.5
Q ss_pred CCCcccccceeEEEeccCceEEEecc---cceEEeCccccceeeCcceEEEeCCcEEEEEEEEccc-cC
Q psy16432 4 PTSDEQKKQDVLKKFMEQHPEMAVRH---QTPIIDGELEHEIKLEESTWVFENAKTVMINMEKILS-LF 68 (69)
Q Consensus 4 pvp~~~~~kdv~v~i~~~~l~v~vkg---~~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~~~-~~ 68 (69)
++| ++.++++.|+++++++.+.+++ ....++++|+++|++++|+|+++++ .|+|+|.|+.. .|
T Consensus 14 ~~~-~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~-~vei~L~K~~~~~W 80 (84)
T cd06466 14 YAK-NVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPT-KVEITLKKAEPGSW 80 (84)
T ss_pred EEC-CCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeCe-EEEEEEEcCCCCCC
Confidence 444 7789999999999999998863 3578999999999999999999997 59999999874 45
No 11
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.25 E-value=1.6e-11 Score=75.02 Aligned_cols=61 Identities=18% Similarity=0.133 Sum_probs=52.0
Q ss_pred CCCCcccccceeEEEeccCceEEEeccc----ceEEeCccccceeeCcceEEEeCCcEEEEEEEEcc-cc
Q psy16432 3 LPTSDEQKKQDVLKKFMEQHPEMAVRHQ----TPIIDGELEHEIKLEESTWVFENAKTVMINMEKIL-SL 67 (69)
Q Consensus 3 ipvp~~~~~kdv~v~i~~~~l~v~vkg~----~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~~-~~ 67 (69)
+++|.. +++.|+|++++|.+.+.+. ...++|+|+++|++++|+|+++++ .|+|+|.|++ +.
T Consensus 16 i~~~~~---~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~-kveI~L~K~~~~~ 81 (108)
T cd06465 16 IELPDA---KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGR-QIEFVLRKKEAGE 81 (108)
T ss_pred EEeCCC---CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCC-eEEEEEEECCCCC
Confidence 345543 8899999999999998653 258999999999999999999985 7999999998 54
No 12
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.24 E-value=3.5e-11 Score=71.21 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=52.3
Q ss_pred CCCCccc--ccceeEEEeccCceEEEeccc---c-eEEeCccccceeeCcceEEEeCCcEEEEEEEEcccc
Q psy16432 3 LPTSDEQ--KKQDVLKKFMEQHPEMAVRHQ---T-PIIDGELEHEIKLEESTWVFENAKTVMINMEKILSL 67 (69)
Q Consensus 3 ipvp~~~--~~kdv~v~i~~~~l~v~vkg~---~-~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~~~~ 67 (69)
+++|... .++++.|+|++++|.|.+++. + .+..|.|+++|++++|+|++.++ .|+|+|.|+++.
T Consensus 17 i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~-ki~i~L~K~~~~ 86 (92)
T cd06468 17 ITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTD-RIVITLAKKKEK 86 (92)
T ss_pred EEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCC-EEEEEEEeCCCC
Confidence 3455443 369999999999999998652 2 46778899999999999999986 699999999853
No 13
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.96 E-value=2.8e-09 Score=62.34 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=52.6
Q ss_pred cccccceeEEEeccCceEEEecc---cceEEeCccccceeeCcceEEEeCCcEEEEEEEEccc-cC
Q psy16432 7 DEQKKQDVLKKFMEQHPEMAVRH---QTPIIDGELEHEIKLEESTWVFENAKTVMINMEKILS-LF 68 (69)
Q Consensus 7 ~~~~~kdv~v~i~~~~l~v~vkg---~~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~~~-~~ 68 (69)
+++.++++.|+|+++++.+.+++ ....++.+|+++|++++|+|++.++ .|+|+|.|++. .|
T Consensus 16 k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K~~~~~W 80 (84)
T cd06489 16 KNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILST-KIEIKLKKTEAIRW 80 (84)
T ss_pred CCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeCc-EEEEEEEcCCCCCC
Confidence 35678999999999999998854 3578999999999999999999986 59999999864 55
No 14
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=98.43 E-value=1.3e-06 Score=51.72 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=48.5
Q ss_pred ccccceeEEEeccCceEEEec---ccceEEeCccccceeeCcceEEEeCCcEEEEEEEEcc-ccC
Q psy16432 8 EQKKQDVLKKFMEQHPEMAVR---HQTPIIDGELEHEIKLEESTWVFENAKTVMINMEKIL-SLF 68 (69)
Q Consensus 8 ~~~~kdv~v~i~~~~l~v~vk---g~~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~~-~~~ 68 (69)
++.++++.+.+.++++.+.+. +..-.++-+|+++|+++.|+|.+..+ .++|.|.|++ +.|
T Consensus 20 ~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~-kvei~L~K~~~~~W 83 (87)
T cd06488 20 NSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPT-KVEIKLRKAEPGSW 83 (87)
T ss_pred cCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcEEEecCc-EEEEEEEeCCCCcC
Confidence 556788999999999887552 32356777999999999999999875 6999999987 455
No 15
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=98.38 E-value=8e-07 Score=48.74 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=48.9
Q ss_pred CCCcccccceeEEEeccCceEEEecc----------cceEEeCccccceeeCcceEEEeCCcEEEEEEEE
Q psy16432 4 PTSDEQKKQDVLKKFMEQHPEMAVRH----------QTPIIDGELEHEIKLEESTWVFENAKTVMINMEK 63 (69)
Q Consensus 4 pvp~~~~~kdv~v~i~~~~l~v~vkg----------~~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K 63 (69)
++|. ..++++.|++.++.|.|..+. .....+..|++.|++++++|++.+| .|.|.|.|
T Consensus 13 ~~~~-~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~-~l~i~l~K 80 (80)
T cd00298 13 DLPG-VKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENG-VLEITLPK 80 (80)
T ss_pred ECCC-CCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECC-EEEEEEcC
Confidence 4555 458999999999999998753 2457888999999999999999996 79999876
No 16
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=98.25 E-value=4e-06 Score=51.84 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=48.4
Q ss_pred cceeEEEeccCceEEEec---ccceEEeCccccceeeCcceEEEeCCcEEEEEEEEccc--cC
Q psy16432 11 KQDVLKKFMEQHPEMAVR---HQTPIIDGELEHEIKLEESTWVFENAKTVMINMEKILS--LF 68 (69)
Q Consensus 11 ~kdv~v~i~~~~l~v~vk---g~~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~~~--~~ 68 (69)
++|+.|+|++++|.+... |.+-.++.+||+.|++++|+....+ +.++|.|.|.++ .|
T Consensus 22 ~~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~-r~ve~~L~K~~~~~~W 83 (106)
T cd00237 22 SKDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKRTD-RSILCCLRKGKEGVAW 83 (106)
T ss_pred CCCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEeCC-ceEEEEEEeCCCCCCC
Confidence 689999999999998763 3455678899999999999999965 689999999863 46
No 17
>KOG4379|consensus
Probab=97.93 E-value=9.8e-06 Score=61.54 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=58.3
Q ss_pred CCCCcccccceeEEEeccCceEEEecccceEEeCccccceeeCcceEEEeCCcEEEEEEEEcccc
Q psy16432 3 LPTSDEQKKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEKILSL 67 (69)
Q Consensus 3 ipvp~~~~~kdv~v~i~~~~l~v~vkg~~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~~~~ 67 (69)
+.+|+..+++++.+++.+.++-+..... .+++|+|+..|..|-|+|.|.....|+++|.|+++.
T Consensus 305 ~~~p~~~~~~~i~Iq~~~~~v~v~~~dh-~~~~g~lyasv~he~s~~ii~ean~Le~sl~K~de~ 368 (596)
T KOG4379|consen 305 FNVPSTASAKEINIQGSKTTVVVKHLDH-VIFDGELYASVGHELSAFIIAEANGLELSLTKADEI 368 (596)
T ss_pred EecccccccceEEEEecCceEEEEeeee-EEeccchhhhccccchhhhhhhhccceEEEeecccc
Confidence 4589999999999999999999999887 799999999999999999999855699999999763
No 18
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.45 E-value=0.00041 Score=49.85 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=49.0
Q ss_pred ccccceeEEEeccCceEEEec---ccceEEeCccccceeeCcceEEEeCCcEEEEEEEEccc-cC
Q psy16432 8 EQKKQDVLKKFMEQHPEMAVR---HQTPIIDGELEHEIKLEESTWVFENAKTVMINMEKILS-LF 68 (69)
Q Consensus 8 ~~~~kdv~v~i~~~~l~v~vk---g~~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~~~-~~ 68 (69)
++.+.++.|+|..+++.|.+. +..-.+.-+|+++|+++.|+.++-.. .|+|.|.|... .|
T Consensus 176 ~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~-Kiei~l~K~~~~~W 239 (356)
T PLN03088 176 GVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVLST-KIEIRLAKAEPITW 239 (356)
T ss_pred CCChHHcEEEeecCEEEEEEecCCCcceeecccccccccccccEEEEecc-eEEEEEecCCCCCc
Confidence 566788999999999999873 32345567999999999999999875 69999999864 55
No 19
>KOG1309|consensus
Probab=97.01 E-value=0.0009 Score=45.61 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=48.3
Q ss_pred cccccceeEEEeccCceEEEecc---cceEEeCccccceeeCcceEEEeCCcEEEEEEEEcc
Q psy16432 7 DEQKKQDVLKKFMEQHPEMAVRH---QTPIIDGELEHEIKLEESTWVFENAKTVMINMEKIL 65 (69)
Q Consensus 7 ~~~~~kdv~v~i~~~~l~v~vkg---~~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~~ 65 (69)
.++...||.|.|+.+.+.+.++. ..-.+.+.|+++|.||.|+.-+-.- .|+|+|.|++
T Consensus 22 k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~st-KVEI~L~K~~ 82 (196)
T KOG1309|consen 22 KNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFST-KVEITLAKAE 82 (196)
T ss_pred cCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeeee-eEEEEecccc
Confidence 45568899999999999987754 2467888899999999999988764 5999999964
No 20
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=96.31 E-value=0.015 Score=34.28 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=41.4
Q ss_pred CCCcccccceeEEEeccCceEEEeccc------ceEE--------eC--ccccceeeCcceEEEeCCcEEEEEEEEccc
Q psy16432 4 PTSDEQKKQDVLKKFMEQHPEMAVRHQ------TPII--------DG--ELEHEIKLEESTWVFENAKTVMINMEKILS 66 (69)
Q Consensus 4 pvp~~~~~kdv~v~i~~~~l~v~vkg~------~~~i--------~G--~L~~~V~~des~Wtied~k~l~I~L~K~~~ 66 (69)
.+| |..+.||.|++..+.|.|.-+.. ..+. .. .|+..++++.-..++++| .|.|.+-|...
T Consensus 14 ~lp-G~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~G-vL~I~~pk~~~ 90 (102)
T PF00011_consen 14 DLP-GFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENG-VLTITIPKKEE 90 (102)
T ss_dssp E-T-TS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTS-EEEEEEEBSSS
T ss_pred ECC-CCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCC-EEEEEEEcccc
Confidence 455 77899999999999988855332 1111 11 366678889889999887 89999999764
No 21
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.23 E-value=0.029 Score=33.09 Aligned_cols=57 Identities=7% Similarity=0.119 Sum_probs=41.1
Q ss_pred ccceeEEEeccCceEEEec--ccceEEeCccccceeeCcceEEEe--CCcEEEEEEEEcc-ccC
Q psy16432 10 KKQDVLKKFMEQHPEMAVR--HQTPIIDGELEHEIKLEESTWVFE--NAKTVMINMEKIL-SLF 68 (69)
Q Consensus 10 ~~kdv~v~i~~~~l~v~vk--g~~~~i~G~L~~~V~~des~Wtie--d~k~l~I~L~K~~-~~~ 68 (69)
.+.++.+.+..+++++.+. +..-.++-+|+++|+++ ++=.+- .+ .++|.|.|++ ..|
T Consensus 22 ~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~L~~~I~~~-~~~~~~~~~~-KVEI~L~K~e~~~W 83 (87)
T cd06490 22 PADIVIVDDQQRELRVEIILGDKSYLLHLDLSNEVQWP-CEVRISTETG-KIELVLKKKEPEKW 83 (87)
T ss_pred CCccEEEECCCCEEEEEEECCCceEEEeeeccccCCCC-cEEEEcccCc-eEEEEEEcCCCCcc
Confidence 4556778888888888763 44457777999999755 355554 44 5999999986 555
No 22
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=95.67 E-value=0.02 Score=33.53 Aligned_cols=57 Identities=19% Similarity=0.263 Sum_probs=40.9
Q ss_pred CCCcccccceeEEEeccCceEEEecccce---------E-----EeC------ccccceeeCcceEEEeCCcEEEEEEEE
Q psy16432 4 PTSDEQKKQDVLKKFMEQHPEMAVRHQTP---------I-----IDG------ELEHEIKLEESTWVFENAKTVMINMEK 63 (69)
Q Consensus 4 pvp~~~~~kdv~v~i~~~~l~v~vkg~~~---------~-----i~G------~L~~~V~~des~Wtied~k~l~I~L~K 63 (69)
.|| |+++.||.|.+..+.|.|.-+.... + -.| .|+ .|+++...-+++|| .|.|+|-|
T Consensus 17 ~lP-Gv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A~~~dG-vL~I~lPK 93 (93)
T cd06471 17 DLP-GFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKAKYENG-VLKITLPK 93 (93)
T ss_pred ECC-CCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEEEEECC-EEEEEEcC
Confidence 456 7899999999999999885532210 1 112 244 57788888999988 89999865
No 23
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=95.27 E-value=0.056 Score=30.37 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=40.8
Q ss_pred ccccceeEEEeccCceEEEecccce-----------EEeC------ccccceeeCcceEEEeCCcEEEEEEEE
Q psy16432 8 EQKKQDVLKKFMEQHPEMAVRHQTP-----------IIDG------ELEHEIKLEESTWVFENAKTVMINMEK 63 (69)
Q Consensus 8 ~~~~kdv~v~i~~~~l~v~vkg~~~-----------~i~G------~L~~~V~~des~Wtied~k~l~I~L~K 63 (69)
++.+.+|.|++..+.|.|.-+-... ...| .|+..++++...-++++| .|.|++.|
T Consensus 17 g~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G-~L~I~~pk 88 (88)
T cd06464 17 GFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG-VLTITLPK 88 (88)
T ss_pred CCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC-EEEEEEcC
Confidence 4788899999999999987432210 1122 377788888899999997 89998865
No 24
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=95.22 E-value=0.047 Score=32.06 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=39.2
Q ss_pred ccccceeEEEeccC-ceEEEeccc--------ce----EEeC------ccccceeeCcceEEEeCCcEEEEEEEE
Q psy16432 8 EQKKQDVLKKFMEQ-HPEMAVRHQ--------TP----IIDG------ELEHEIKLEESTWVFENAKTVMINMEK 63 (69)
Q Consensus 8 ~~~~kdv~v~i~~~-~l~v~vkg~--------~~----~i~G------~L~~~V~~des~Wtied~k~l~I~L~K 63 (69)
|+++.||.|++..+ .|.|.-+-. .. .-.| .|+..|+++.-.-+++|| .|.|+|-|
T Consensus 19 Gv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~~nG-vL~I~lPK 92 (92)
T cd06472 19 GVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFLENG-VLTVTVPK 92 (92)
T ss_pred CCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEEECC-EEEEEecC
Confidence 57899999999875 577754211 00 1123 456688888889999998 89999865
No 25
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.24 Score=31.46 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=43.6
Q ss_pred cccccceeEEEeccCceEEEecccc------------eEEeC------ccccceeeCcceEEEeCCcEEEEEEEEccc
Q psy16432 7 DEQKKQDVLKKFMEQHPEMAVRHQT------------PIIDG------ELEHEIKLEESTWVFENAKTVMINMEKILS 66 (69)
Q Consensus 7 ~~~~~kdv~v~i~~~~l~v~vkg~~------------~~i~G------~L~~~V~~des~Wtied~k~l~I~L~K~~~ 66 (69)
+|++++||.|++..+.|.|..+-.. -+-.| .|+..|+++...=++++| .|+|.|.|...
T Consensus 59 PG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~~nG-vL~I~lpk~~~ 135 (146)
T COG0071 59 PGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKYKNG-LLTVTLPKAEP 135 (146)
T ss_pred CCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeEeeCc-EEEEEEecccc
Confidence 4788999999999998887653321 02233 356677877778889887 89999999654
No 26
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=92.88 E-value=0.29 Score=28.74 Aligned_cols=56 Identities=11% Similarity=0.166 Sum_probs=41.5
Q ss_pred cccccceeEEEeccCceEEEecccc-----eEEeCc------cccceeeCcceEEEe-CCcEEEEEEEE
Q psy16432 7 DEQKKQDVLKKFMEQHPEMAVRHQT-----PIIDGE------LEHEIKLEESTWVFE-NAKTVMINMEK 63 (69)
Q Consensus 7 ~~~~~kdv~v~i~~~~l~v~vkg~~-----~~i~G~------L~~~V~~des~Wtie-d~k~l~I~L~K 63 (69)
+|.++.||.|++..+.|.|.-+.+. -+..++ |+..|+++.-.=++. || .|.|+|-|
T Consensus 16 pG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dG-vL~I~lPk 83 (84)
T cd06498 16 KHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDG-VLTVCGPR 83 (84)
T ss_pred CCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCC-EEEEEEeC
Confidence 4778999999999999988664321 133333 556788888888995 77 89999876
No 27
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=92.64 E-value=0.71 Score=27.03 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=38.5
Q ss_pred CCCcccccceeEEEeccCceEEEecccc-----------eEEeCc------cccceeeCcceEEEeCCcEEEEEEEE
Q psy16432 4 PTSDEQKKQDVLKKFMEQHPEMAVRHQT-----------PIIDGE------LEHEIKLEESTWVFENAKTVMINMEK 63 (69)
Q Consensus 4 pvp~~~~~kdv~v~i~~~~l~v~vkg~~-----------~~i~G~------L~~~V~~des~Wtied~k~l~I~L~K 63 (69)
.|| |+++.||.|.+..+.|.|.-+... -+-.|. |+..|+.+ .-+++|| .|.|+|.+
T Consensus 18 ~lP-G~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~~~G-vL~I~l~~ 90 (90)
T cd06470 18 AVA-GFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAELENG-LLTIDLER 90 (90)
T ss_pred ECC-CCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEEeCC-EEEEEEEC
Confidence 344 789999999999999888742110 012343 55567665 5789998 79999864
No 28
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=92.46 E-value=0.48 Score=33.07 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=47.9
Q ss_pred CCCCcccccceeEEEeccCceEEEecccceEEeCccccceeeCcce--EEEeCCcEEEEEE
Q psy16432 3 LPTSDEQKKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEEST--WVFENAKTVMINM 61 (69)
Q Consensus 3 ipvp~~~~~kdv~v~i~~~~l~v~vkg~~~~i~G~L~~~V~~des~--Wtied~k~l~I~L 61 (69)
|.||.-.+.+++.++++.++|.|...+..-.|+=.|+.+|+.+.+. |.=.. +.|.|+|
T Consensus 267 i~LP~~~s~~~i~LdV~~~~l~l~~~~~~y~L~l~LP~~V~~~~~~Akf~~~~-~~L~vtl 326 (328)
T PF08190_consen 267 IELPGVESASDIDLDVSEDRLSLSSPKPKYRLDLPLPYPVDEDNGKAKFDKKT-KTLTVTL 326 (328)
T ss_pred EECCCcCccceeEEEEeCCEEEEEeCCCceEEEccCCCcccCCCceEEEccCC-CEEEEEE
Confidence 4578767899999999999999999884468999999999999876 55443 5788887
No 29
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=92.06 E-value=0.32 Score=28.62 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=39.7
Q ss_pred cccccceeEEEeccCceEEEecccc-----eEEeC------ccccceeeCcceEEE-eCCcEEEEEEEE
Q psy16432 7 DEQKKQDVLKKFMEQHPEMAVRHQT-----PIIDG------ELEHEIKLEESTWVF-ENAKTVMINMEK 63 (69)
Q Consensus 7 ~~~~~kdv~v~i~~~~l~v~vkg~~-----~~i~G------~L~~~V~~des~Wti-ed~k~l~I~L~K 63 (69)
+|+++.||.|++..+.|.|.-+..+ -++.. .|+..|+++.-.=++ +|| .|.|++-|
T Consensus 19 pG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dG-vL~I~~PK 86 (86)
T cd06497 19 KHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADG-MLTFSGPK 86 (86)
T ss_pred CCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCC-EEEEEecC
Confidence 4678899999999999888653221 13222 255677888788888 677 79998865
No 30
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=91.95 E-value=0.33 Score=28.28 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=39.9
Q ss_pred CCCcccccceeEEEeccCceEEEecccc-----eEEeC------ccccceeeCcceEEE-eCCcEEEEEEEE
Q psy16432 4 PTSDEQKKQDVLKKFMEQHPEMAVRHQT-----PIIDG------ELEHEIKLEESTWVF-ENAKTVMINMEK 63 (69)
Q Consensus 4 pvp~~~~~kdv~v~i~~~~l~v~vkg~~-----~~i~G------~L~~~V~~des~Wti-ed~k~l~I~L~K 63 (69)
.|| |.++.||.|++..+.|.|.-+... -++.- .|+..|+++.-.=++ +|| .|.|++-|
T Consensus 14 dlp-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dG-vL~I~~PK 83 (83)
T cd06478 14 DVK-HFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADG-VLTISGPR 83 (83)
T ss_pred ECC-CCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCC-EEEEEecC
Confidence 454 889999999999999988653221 12222 245567777777788 577 78888755
No 31
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=91.93 E-value=0.4 Score=28.11 Aligned_cols=56 Identities=11% Similarity=0.167 Sum_probs=39.9
Q ss_pred cccccceeEEEeccCceEEEecccc-----eEEeCc------cccceeeCcceEEEe-CCcEEEEEEEE
Q psy16432 7 DEQKKQDVLKKFMEQHPEMAVRHQT-----PIIDGE------LEHEIKLEESTWVFE-NAKTVMINMEK 63 (69)
Q Consensus 7 ~~~~~kdv~v~i~~~~l~v~vkg~~-----~~i~G~------L~~~V~~des~Wtie-d~k~l~I~L~K 63 (69)
+|.++.||.|++..+.|.|.-+... -+..++ |+..|+++.-.=++. || .|.|++-|
T Consensus 16 pG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dG-vL~I~~Pr 83 (83)
T cd06476 16 CHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDG-ILCIQAPR 83 (83)
T ss_pred CCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCC-EEEEEecC
Confidence 3678899999999999988664321 144454 455677787788886 77 78888743
No 32
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=91.21 E-value=0.42 Score=28.05 Aligned_cols=56 Identities=13% Similarity=0.202 Sum_probs=39.9
Q ss_pred CCcccccceeEEEeccCceEEEeccc--ceEEeC------ccccceeeCcceEEE-eCCcEEEEEEE
Q psy16432 5 TSDEQKKQDVLKKFMEQHPEMAVRHQ--TPIIDG------ELEHEIKLEESTWVF-ENAKTVMINME 62 (69)
Q Consensus 5 vp~~~~~kdv~v~i~~~~l~v~vkg~--~~~i~G------~L~~~V~~des~Wti-ed~k~l~I~L~ 62 (69)
+| +.++.||.|++..+.|.|.-.-+ .-...| .|+..|+++.-.=.+ +|| .|.|++.
T Consensus 16 lp-G~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~G-vL~I~~~ 80 (81)
T cd06479 16 VS-DFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDG-TLTIKAR 80 (81)
T ss_pred CC-CCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCC-EEEEEec
Confidence 44 78899999999999888864211 111223 366778888888887 887 7888875
No 33
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=90.01 E-value=0.64 Score=26.70 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=40.1
Q ss_pred CCCCcccccceeEEEeccCceEEEecccc-----eEEeCc------cccceeeCcceEEEeCCcEEEEEEEE
Q psy16432 3 LPTSDEQKKQDVLKKFMEQHPEMAVRHQT-----PIIDGE------LEHEIKLEESTWVFENAKTVMINMEK 63 (69)
Q Consensus 3 ipvp~~~~~kdv~v~i~~~~l~v~vkg~~-----~~i~G~------L~~~V~~des~Wtied~k~l~I~L~K 63 (69)
++|| |.++.||.|++..+.|.|.-+-+. -+..|+ |+..|+++...=++.++..|.|++-|
T Consensus 13 ~dlp-G~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 13 LDVK-GFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred EECC-CCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 3455 689999999999999888664221 123343 45566666666677762378888754
No 34
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=88.86 E-value=1.2 Score=28.81 Aligned_cols=54 Identities=9% Similarity=0.143 Sum_probs=38.9
Q ss_pred ccccceeEEEeccCceEEEecccc------e----EEeCc------cccceeeCcceEEEeCCcEEEEEEEEc
Q psy16432 8 EQKKQDVLKKFMEQHPEMAVRHQT------P----IIDGE------LEHEIKLEESTWVFENAKTVMINMEKI 64 (69)
Q Consensus 8 ~~~~kdv~v~i~~~~l~v~vkg~~------~----~i~G~------L~~~V~~des~Wtied~k~l~I~L~K~ 64 (69)
|++++||.|.+..+.|+|.-..+. . .-.|. |+..|+.+ .=+++|| .|.|+|-|.
T Consensus 53 Gv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~~nG-VL~I~lPK~ 122 (142)
T PRK11597 53 GFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATFVNG-LLHIDLIRN 122 (142)
T ss_pred CCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEEcCC-EEEEEEecc
Confidence 788999999999999998664211 1 12243 44567776 3578887 899999885
No 35
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=86.64 E-value=1.5 Score=25.79 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=37.4
Q ss_pred cccccceeEEEeccCceEEEecccc---------eEEeCc------cccceeeCcceEEE-eCCcEEEEEE
Q psy16432 7 DEQKKQDVLKKFMEQHPEMAVRHQT---------PIIDGE------LEHEIKLEESTWVF-ENAKTVMINM 61 (69)
Q Consensus 7 ~~~~~kdv~v~i~~~~l~v~vkg~~---------~~i~G~------L~~~V~~des~Wti-ed~k~l~I~L 61 (69)
++.++.||.|++..+.|.|.-+-+. ....|+ |+..|+.+.-.=++ +|| .|.|.+
T Consensus 16 pG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dG-vL~I~~ 85 (87)
T cd06481 16 RGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSG-HLHIRA 85 (87)
T ss_pred CCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCc-eEEEEc
Confidence 4678999999999999998553210 123454 45567777777777 777 687765
No 36
>KOG3260|consensus
Probab=86.52 E-value=1.2 Score=30.85 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=46.4
Q ss_pred ccccceeEEEeccCceEEEecc---c-ceEEeCccccceeeCcceEEEeCCcEEEEEEEEc-cccC
Q psy16432 8 EQKKQDVLKKFMEQHPEMAVRH---Q-TPIIDGELEHEIKLEESTWVFENAKTVMINMEKI-LSLF 68 (69)
Q Consensus 8 ~~~~kdv~v~i~~~~l~v~vkg---~-~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~-~~~~ 68 (69)
|+.-..|+|.|++.+|.+.+++ . --.+--+|+++|.++.|.=-+-.. .+.|.+.|. +.+|
T Consensus 94 GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd-~v~I~~kkVe~~rw 158 (224)
T KOG3260|consen 94 GVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTD-TVLILCKKVENTRW 158 (224)
T ss_pred cccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccc-eEEEeehhhhcccc
Confidence 4445679999999999998854 2 136777899999999999888764 789999774 4455
No 37
>PRK10743 heat shock protein IbpA; Provisional
Probab=86.01 E-value=2.3 Score=27.22 Aligned_cols=54 Identities=15% Similarity=0.176 Sum_probs=39.0
Q ss_pred ccccceeEEEeccCceEEEeccc------ce----EEeCc------cccceeeCcceEEEeCCcEEEEEEEEc
Q psy16432 8 EQKKQDVLKKFMEQHPEMAVRHQ------TP----IIDGE------LEHEIKLEESTWVFENAKTVMINMEKI 64 (69)
Q Consensus 8 ~~~~kdv~v~i~~~~l~v~vkg~------~~----~i~G~------L~~~V~~des~Wtied~k~l~I~L~K~ 64 (69)
|+++.||.|++..+.|.|.-+.. .. .-.|. |+..|+.|. =+++|| .|.|+|-|.
T Consensus 55 Gv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~~~dG-VL~I~lPK~ 124 (137)
T PRK10743 55 GFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--ANLVNG-LLYIDLERV 124 (137)
T ss_pred CCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CEEeCC-EEEEEEeCC
Confidence 88899999999999888865321 11 23354 445677764 578887 899999985
No 38
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=82.39 E-value=3.1 Score=24.35 Aligned_cols=54 Identities=7% Similarity=0.142 Sum_probs=34.6
Q ss_pred cccccceeEEEeccCceEEEecccc-----eEEeCccc------cceeeCcceEEEe-CCcEEEEEE
Q psy16432 7 DEQKKQDVLKKFMEQHPEMAVRHQT-----PIIDGELE------HEIKLEESTWVFE-NAKTVMINM 61 (69)
Q Consensus 7 ~~~~~kdv~v~i~~~~l~v~vkg~~-----~~i~G~L~------~~V~~des~Wtie-d~k~l~I~L 61 (69)
+|.++.||.|++..+.|.|.-+.+. -+..+.|. ..|+++.-.=++. || .|.|+|
T Consensus 19 PG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dG-vL~I~l 84 (86)
T cd06475 19 NHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDG-ILTVEA 84 (86)
T ss_pred CCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCC-eEEEEe
Confidence 3778899999999998888654331 13333333 3455555556665 66 677775
No 39
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=82.11 E-value=7.2 Score=26.38 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=33.9
Q ss_pred ccccce-eEEEeccCceEE--EecccceEEeC-ccccceeeCcceEEEeCCcEEEEEEEEccc
Q psy16432 8 EQKKQD-VLKKFMEQHPEM--AVRHQTPIIDG-ELEHEIKLEESTWVFENAKTVMINMEKILS 66 (69)
Q Consensus 8 ~~~~kd-v~v~i~~~~l~v--~vkg~~~~i~G-~L~~~V~~des~Wtied~k~l~I~L~K~~~ 66 (69)
++++.+ |.|.+..+...+ ...+. +++- .|..+ .++--.|++-+| .|+|.|.+.++
T Consensus 112 GVs~dd~idV~l~~d~~~L~i~~~~~--~~krv~L~~~-~~e~~~~t~nNg-ILEIri~~~~~ 170 (177)
T PF05455_consen 112 GVSDDDAIDVTLDDDEGALTIRVGEK--YLKRVALPWP-DPEITSATFNNG-ILEIRIRRTEE 170 (177)
T ss_pred CCCcccceeeEeecCCceEEEecCCc--eEeeEecCCC-ccceeeEEEeCc-eEEEEEeecCC
Confidence 444444 777777555544 44443 3332 35555 344446888776 89999999876
No 40
>KOG3158|consensus
Probab=81.33 E-value=2.4 Score=28.81 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=42.4
Q ss_pred cceeEEEeccCceEEEeccc----ceEEeCccccceeeCcceEEEeCCcEEEEEEEEccc
Q psy16432 11 KQDVLKKFMEQHPEMAVRHQ----TPIIDGELEHEIKLEESTWVFENAKTVMINMEKILS 66 (69)
Q Consensus 11 ~kdv~v~i~~~~l~v~vkg~----~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~~~ 66 (69)
++++.+++.+..|.+.-++. .-.++=+||..|+|++|.=..- ++.+...|.|...
T Consensus 28 ~~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~-~r~if~i~~K~e~ 86 (180)
T KOG3158|consen 28 AKDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRT-SRSIFCILRKKEL 86 (180)
T ss_pred CccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhcccccc-ceEEEEEEEcccc
Confidence 78899999999888876653 2344568999999999999887 5666666666543
No 41
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=80.11 E-value=5.1 Score=26.58 Aligned_cols=45 Identities=7% Similarity=0.031 Sum_probs=32.5
Q ss_pred EEEeccCceEEEecccceEEeCccccceeeCcceEEEeCCcEE-EEEE
Q psy16432 15 LKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTV-MINM 61 (69)
Q Consensus 15 ~v~i~~~~l~v~vkg~~~~i~G~L~~~V~~des~Wtied~k~l-~I~L 61 (69)
.+-+++++|.|-+.|+ ++.+.--.-+.++.+.|+|.+|..+ ++++
T Consensus 83 ~~~fd~~sitVliDG~--iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~v 128 (154)
T COG3354 83 SIAFDNTSITVLIDGN--IVTPAYVTFTSVNGSSIRLSPGQVGREVTV 128 (154)
T ss_pred ccccCCCeEEEEEcCc--EeccceEEEEecCCCeeEecCCceeeEEEe
Confidence 4456777777777776 6666667778999999999887544 4544
No 42
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=79.74 E-value=6.8 Score=22.97 Aligned_cols=53 Identities=9% Similarity=0.225 Sum_probs=35.6
Q ss_pred cccccceeEEEeccCceEEEecccc-----eEEeCc------cccceeeCcceEEE-eCCcEEEEE
Q psy16432 7 DEQKKQDVLKKFMEQHPEMAVRHQT-----PIIDGE------LEHEIKLEESTWVF-ENAKTVMIN 60 (69)
Q Consensus 7 ~~~~~kdv~v~i~~~~l~v~vkg~~-----~~i~G~------L~~~V~~des~Wti-ed~k~l~I~ 60 (69)
+|.++.||.|++..+.|.|.-+... -+..+. |+..|+++.-.=++ +|| .|.|.
T Consensus 16 pG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dG-vL~I~ 80 (83)
T cd06477 16 VQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDG-ILVVE 80 (83)
T ss_pred CCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCC-EEEEE
Confidence 3678899999999999999664221 133333 55567777777666 566 56664
No 43
>PF08198 Thymopoietin: Thymopoietin protein; InterPro: IPR013146 This entry included thymopoietins; short proteins of 49 amino acid isolated from bovine spleen cells []. Thymopoietins (TMPOs) are a group of ubiquitously expressed nuclear proteins. They are suggested to play an important role in nuclear envelope organisation and cell cycle control []. Thymopoietins are characterised by LEM (LAP2, emerin, MAN1) domain, this is a globular module of approximately 40 amino acids, which is mostly found in the nucleoplasmic portions of metazoan inner nuclear membrane proteins. The LEM domain has been shown to mediate binding to BAF (barrier-to-autointegration factor) and BAF-DNA complexes. BAF dimers bind to double-stranded DNA non-specifically and thereby bridge DNA molecules to form a large, discrete nucleoprotein complex [, ]. The resolution of the solution structure of the LEM domain reveals that it is composed of a three-residue N-terminal helical turn and two large parallel alpha helices interacting through a set of conserved hydrophobic amino acids. The two helices, which are connected by a long loop are oriented at an angle of ~45 degree []. ; PDB: 1GJJ_A 1H9E_A.
Probab=75.97 E-value=0.31 Score=26.63 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=16.2
Q ss_pred CCCCCCcccccceeEEEeccCceE
Q psy16432 1 MGLPTSDEQKKQDVLKKFMEQHPE 24 (69)
Q Consensus 1 ~~ipvp~~~~~kdv~v~i~~~~l~ 24 (69)
.|+++|.+-.+|||-|++--+||+
T Consensus 22 ~nV~LP~g~~~KdvYVqLYlkhl~ 45 (49)
T PF08198_consen 22 HNVALPSGEQRKDVYVQLYLKHLT 45 (49)
T ss_dssp TT----SSS-CCCHHHHCCCCCCT
T ss_pred cCCCCCCCCcccchhHHHHHHHHH
Confidence 478999999999999998887774
No 44
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=71.47 E-value=16 Score=21.57 Aligned_cols=55 Identities=11% Similarity=0.123 Sum_probs=37.8
Q ss_pred CCcccccceeEEEeccCceEEEecccc--------eEEeCc------cccceeeCcceEEEeCCcEEEEE
Q psy16432 5 TSDEQKKQDVLKKFMEQHPEMAVRHQT--------PIIDGE------LEHEIKLEESTWVFENAKTVMIN 60 (69)
Q Consensus 5 vp~~~~~kdv~v~i~~~~l~v~vkg~~--------~~i~G~------L~~~V~~des~Wtied~k~l~I~ 60 (69)
|| |.++.||.|++..+.|.|.-+.+. -.--|. |+..|+.|.-.=+++++..|+|.
T Consensus 16 lP-G~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~ 84 (87)
T cd06482 16 VC-GFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE 84 (87)
T ss_pred CC-CCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence 44 788999999999999998764321 133343 44567777777778776566653
No 45
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=68.62 E-value=13 Score=22.27 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=32.0
Q ss_pred ccccceeEEEeccCceEEEecccc-----eEEeCc------cccceeeCcceEEEe-CCcEEEEEE
Q psy16432 8 EQKKQDVLKKFMEQHPEMAVRHQT-----PIIDGE------LEHEIKLEESTWVFE-NAKTVMINM 61 (69)
Q Consensus 8 ~~~~kdv~v~i~~~~l~v~vkg~~-----~~i~G~------L~~~V~~des~Wtie-d~k~l~I~L 61 (69)
+.++.||.|++..+.|.|.-+-+. -++.++ |+..|+++.-+=++. || .|.|.+
T Consensus 25 gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dG-vL~Iea 89 (91)
T cd06480 25 SFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEG-LLIIEA 89 (91)
T ss_pred CCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCC-eEEEEc
Confidence 456778888888888877553221 144454 444556666666666 55 566653
No 46
>KOG1667|consensus
Probab=65.52 E-value=19 Score=26.24 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=35.5
Q ss_pred EEeccCceEEEe---ccc-ceEEeCccccceeeCcceEEEeCCcEEEEEEEEccc
Q psy16432 16 KKFMEQHPEMAV---RHQ-TPIIDGELEHEIKLEESTWVFENAKTVMINMEKILS 66 (69)
Q Consensus 16 v~i~~~~l~v~v---kg~-~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~~~ 66 (69)
|...+..|.|.+ .|+ ..=++=+|++-|++++|.=+|-. ..++|+|-|++.
T Consensus 242 iean~~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~-tkVEIsl~k~ep 295 (320)
T KOG1667|consen 242 IEANGTTLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGE-TKVEISLKKAEP 295 (320)
T ss_pred eeeCCeEEEEEEEecCCCceeeccceeeeeechhhceEEeec-ceEEEEEeccCC
Confidence 444444555544 333 34566689999999999998876 469999999875
No 47
>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Probab=60.06 E-value=16 Score=20.50 Aligned_cols=20 Identities=5% Similarity=0.277 Sum_probs=15.0
Q ss_pred eCcceEEEe--CCcEEEEEEEE
Q psy16432 44 LEESTWVFE--NAKTVMINMEK 63 (69)
Q Consensus 44 ~des~Wtie--d~k~l~I~L~K 63 (69)
.-.|+|+|. +|+.|.|+++.
T Consensus 15 ~~~C~w~i~~~~g~~i~l~f~~ 36 (102)
T smart00042 15 NLDCVWTIRAPPGYRIELQFTD 36 (102)
T ss_pred CCcEEEEEECCCCeEEEEEEEE
Confidence 456899988 36778888775
No 48
>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Probab=52.06 E-value=24 Score=19.78 Aligned_cols=21 Identities=14% Similarity=0.359 Sum_probs=15.7
Q ss_pred eeCcceEEEe--CCcEEEEEEEE
Q psy16432 43 KLEESTWVFE--NAKTVMINMEK 63 (69)
Q Consensus 43 ~~des~Wtie--d~k~l~I~L~K 63 (69)
..-+|+|+|. +|..|.|.++.
T Consensus 24 ~~~~C~w~i~~~~g~~i~l~f~~ 46 (113)
T cd00041 24 NNLNCVWTIEAPPGYRIRLTFED 46 (113)
T ss_pred CCCcEEEEEEcCCCCEEEEEEeC
Confidence 4568999997 46778887764
No 49
>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork. ; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....
Probab=49.63 E-value=26 Score=19.61 Aligned_cols=20 Identities=10% Similarity=0.365 Sum_probs=14.1
Q ss_pred eCcceEEEeC--CcEEEEEEEE
Q psy16432 44 LEESTWVFEN--AKTVMINMEK 63 (69)
Q Consensus 44 ~des~Wtied--~k~l~I~L~K 63 (69)
..+|.|+|+- ++.|.|.+..
T Consensus 24 ~~~C~w~i~~~~~~~I~l~f~~ 45 (110)
T PF00431_consen 24 NSDCTWTITAPPGHRIRLTFLS 45 (110)
T ss_dssp SEEEEEEEE-STTEEEEEEEEE
T ss_pred CCcEeEEEEecccceeeecccc
Confidence 4579999994 6667777654
No 50
>KOG1757|consensus
Probab=42.96 E-value=11 Score=24.07 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=19.6
Q ss_pred cccceeEEE-eccCceEEEecccc
Q psy16432 9 QKKQDVLKK-FMEQHPEMAVRHQT 31 (69)
Q Consensus 9 ~~~kdv~v~-i~~~~l~v~vkg~~ 31 (69)
-.+||++|+ |++.|+.+.++|.+
T Consensus 75 NasKdLKvKRitprHlqLAiRGDe 98 (131)
T KOG1757|consen 75 NASKDLKVKRITPRHLQLAIRGDE 98 (131)
T ss_pred cccccceeeeccchhheeeecCcH
Confidence 357888886 99999999999984
No 51
>PHA03324 nuclear egress membrane protein UL34; Provisional
Probab=41.70 E-value=46 Score=23.72 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=35.7
Q ss_pred eccCceEEEecccceEEeCccccceeeCcceEEEeCCcEEEEEEEEcccc
Q psy16432 18 FMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEKILSL 67 (69)
Q Consensus 18 i~~~~l~v~vkg~~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~~~~ 67 (69)
+..-.|+|.--|+.+++.|=|+.+-..-+..|+.+.+ . |+|.-++..
T Consensus 68 v~dpylRIQNTGvSVLfqG~Ftrp~~ap~~a~ta~~n-n--ViLaSt~St 114 (274)
T PHA03324 68 IGEAWLRIQNTGQAVIVAGCFTKNAHCGDQIWEAPAP-T--ISLAAAKSL 114 (274)
T ss_pred CCCceEEEecCceEEEEEeeecCCCCCCcceeecCCC-c--eEeeechhc
Confidence 3456677777788899999999999999999999876 2 444444333
No 52
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=41.64 E-value=48 Score=20.23 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=27.2
Q ss_pred cccceEEeCccccce-eeCcceEEEeCCcEEEEEEEEc
Q psy16432 28 RHQTPIIDGELEHEI-KLEESTWVFENAKTVMINMEKI 64 (69)
Q Consensus 28 kg~~~~i~G~L~~~V-~~des~Wtied~k~l~I~L~K~ 64 (69)
+|.+++..|-+++.| +.+|.+=+|+-|....+.++|.
T Consensus 46 kGD~VvT~gGi~G~V~~v~d~~v~I~l~~~~~i~~~k~ 83 (97)
T COG1862 46 KGDEVVTIGGIVGTVTKVGDDTVEIELGDGTKIKFEKE 83 (97)
T ss_pred CCCEEEEcCCeEEEEEEEecCcEEEEECCCeEEEEEHH
Confidence 566788888888887 6777777777555577777764
No 53
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=41.32 E-value=7.7 Score=28.62 Aligned_cols=57 Identities=12% Similarity=0.021 Sum_probs=42.7
Q ss_pred cccceeEEEeccCceEEEeccc----ceEEeCccccceeeCcceEEEeCCcEEEEEEEEccc
Q psy16432 9 QKKQDVLKKFMEQHPEMAVRHQ----TPIIDGELEHEIKLEESTWVFENAKTVMINMEKILS 66 (69)
Q Consensus 9 ~~~kdv~v~i~~~~l~v~vkg~----~~~i~G~L~~~V~~des~Wtied~k~l~I~L~K~~~ 66 (69)
++..||..-|.++.|++.++-. .-.+.-.|++.|.|+-+.--+=. |.++++|.|.++
T Consensus 197 v~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fs-K~~e~~l~KV~~ 257 (368)
T COG5091 197 VGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFS-KRVEVHLRKVEM 257 (368)
T ss_pred CCccccceeecCCcceeeeeccccchHHHhhhhhhhhcCcchhhhhhcc-hhheehhhhhhh
Confidence 4567788888888888877432 13566689999999988777766 579999988653
No 54
>PF02767 DNA_pol3_beta_2: DNA polymerase III beta subunit, central domain; InterPro: IPR022637 This entry describes the central domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3T0P_B 3P16_A 3RB9_B 2AWA_C 1VPK_A 2AVT_B 2XUR_B 3Q4K_A 3BEP_A 3D1G_A ....
Probab=32.71 E-value=65 Score=19.15 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=19.2
Q ss_pred cceeEEEeccCceEEEecccc---eEEeCcccc
Q psy16432 11 KQDVLKKFMEQHPEMAVRHQT---PIIDGELEH 40 (69)
Q Consensus 11 ~kdv~v~i~~~~l~v~vkg~~---~~i~G~L~~ 40 (69)
..+|.+.+..+++.+...+-. -+|+|+++.
T Consensus 84 ~~~v~i~~~~~~i~f~~~~~~~~srli~g~yPd 116 (116)
T PF02767_consen 84 DEEVEISISDNQIIFKFDNIEITSRLIDGEYPD 116 (116)
T ss_dssp SSEEEEEEESSEEEEEESSEEEEEE-BSS----
T ss_pred CceEEEEEcCCEEEEEECCEEEEEEEecccCCC
Confidence 467888888888888887652 478888763
No 55
>COG1869 RbsD ABC-type ribose transport system, auxiliary component [Carbohydrate transport and metabolism]
Probab=32.19 E-value=35 Score=22.22 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=13.4
Q ss_pred CCCCCCcccccceeEEE
Q psy16432 1 MGLPTSDEQKKQDVLKK 17 (69)
Q Consensus 1 ~~ipvp~~~~~kdv~v~ 17 (69)
.|+|+|++++.=|+.+.
T Consensus 29 aGlPIP~~v~rIDLal~ 45 (135)
T COG1869 29 AGLPIPKGVKRIDLALT 45 (135)
T ss_pred CCCCCCCCccEEEEEee
Confidence 58999999887776654
No 56
>PF11869 DUF3389: Protein of unknown function (DUF3389); InterPro: IPR021811 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=31.48 E-value=1.1e+02 Score=18.01 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=29.1
Q ss_pred cccceeEEEeccCceEEEecc-cceEEeCccccceeeCcceEEEe
Q psy16432 9 QKKQDVLKKFMEQHPEMAVRH-QTPIIDGELEHEIKLEESTWVFE 52 (69)
Q Consensus 9 ~~~kdv~v~i~~~~l~v~vkg-~~~~i~G~L~~~V~~des~Wtie 52 (69)
.++.+|.|++...++.+.-.- .-.++.|..-=.-+..++-|++-
T Consensus 12 ~t~~Ev~vrL~~~~vtLqA~~D~I~li~~anvi~A~g~~vkWSik 56 (75)
T PF11869_consen 12 ATPHEVVVRLNGSHVTLQAQVDDITLIGGANVIIANGGEVKWSIK 56 (75)
T ss_pred EcceEEEEEECCCcEEEEEeeeehhhcCCCcEEEEeCcceEEEEE
Confidence 467889999999995553321 12366665555556777789985
No 57
>PF08977 BOFC_N: Bypass of Forespore C, N terminal; InterPro: IPR015071 The N-terminal domain of, bypass of forespore C, is composed of a four-stranded beta-sheet covered by an alpha-helix. The beta-sheet has a beta2-beta1-beta4-beta3 topology, where strands beta1 and beta2 and strands beta3 and beta4 are connected by beta-turns, whereas strands beta2 and beta3 are joined by an alpha-helix that runs across one face of the beta-sheet. This domain is similar to the third immunoglobulin G-binding domain of protein G from Streptococcus, the latter belonging to a large and diverse group of cell surface-associated proteins that bind to immunoglobulins. It has been hypothesised that this domain may be a mediator of protein-protein interactions involved in proteolytic events at the cell surface []. ; PDB: 2BW2_A.
Probab=31.30 E-value=12 Score=20.52 Aligned_cols=22 Identities=41% Similarity=0.765 Sum_probs=15.1
Q ss_pred ceEEeCccccceeeCcceEEEeC
Q psy16432 31 TPIIDGELEHEIKLEESTWVFEN 53 (69)
Q Consensus 31 ~~~i~G~L~~~V~~des~Wtied 53 (69)
..+++|+....++.+ ..|+++|
T Consensus 7 r~YlDGevseE~~~E-ti~s~ed 28 (51)
T PF08977_consen 7 RVYLDGEVSEEIKEE-TIWSMED 28 (51)
T ss_dssp EE-SSS-EEEEEEEE-EEEEHHH
T ss_pred EEEecCceeEEEEEe-eeccHHH
Confidence 469999988877654 6799886
No 58
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=30.45 E-value=1.1e+02 Score=17.26 Aligned_cols=26 Identities=15% Similarity=0.417 Sum_probs=18.8
Q ss_pred cceee-CcceEEEe----CCcEEEEEEEEcc
Q psy16432 40 HEIKL-EESTWVFE----NAKTVMINMEKIL 65 (69)
Q Consensus 40 ~~V~~-des~Wtie----d~k~l~I~L~K~~ 65 (69)
..|+. ++-.|.++ ||+.++|.+....
T Consensus 46 ~~ve~~~~g~yev~~~~~dG~~~ev~vD~~t 76 (83)
T PF13670_consen 46 REVEFDDDGCYEVEARDKDGKKVEVYVDPAT 76 (83)
T ss_pred EEEEEcCCCEEEEEEEECCCCEEEEEEcCCC
Confidence 35667 55469998 6888999887643
No 59
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=29.22 E-value=1.2e+02 Score=17.71 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=24.9
Q ss_pred cccceEEeCccccce-eeCcceEEEeCCcEEEEEEEE
Q psy16432 28 RHQTPIIDGELEHEI-KLEESTWVFENAKTVMINMEK 63 (69)
Q Consensus 28 kg~~~~i~G~L~~~V-~~des~Wtied~k~l~I~L~K 63 (69)
+|++++..|-+++.| ..+|.+=++|-+....+.++|
T Consensus 40 ~Gd~VvT~gGi~G~V~~i~d~~v~vei~~g~~i~~~r 76 (84)
T TIGR00739 40 KGDKVLTIGGIIGTVTKIAENTIVIELNDNTEITFSK 76 (84)
T ss_pred CCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEEEh
Confidence 455688888899987 466666677744346677665
No 60
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=29.15 E-value=65 Score=18.11 Aligned_cols=18 Identities=6% Similarity=0.219 Sum_probs=12.1
Q ss_pred eCCcEEEEEEEEccccCC
Q psy16432 52 ENAKTVMINMEKILSLFS 69 (69)
Q Consensus 52 ed~k~l~I~L~K~~~~~~ 69 (69)
..|..++|-+++.+..|+
T Consensus 40 ~~~E~~~v~I~~~~~~ws 57 (69)
T PF07177_consen 40 RIGEKFEVRIDEVEPSWS 57 (69)
T ss_dssp -TT-EEEEEEEEE-SSSS
T ss_pred cCCCEEEEEEEecCCCce
Confidence 345678888899888886
No 61
>PF09211 DUF1958: Domain of unknown function (DUF1958); InterPro: IPR015294 Penicillin-binding proteins are beta-lactam antibiotic-sensitive bacterial enzymes required for the growth and maintenance of the peptidoglycan layer of the bacterial cell wall that protects the cell from osmotic stress. Penicillin-binding protein 4 (PBP4) functions as a transpeptidase, and belongs to MEROPS peptidase family S11 (clan SE). PBP4 acts co-operatively with PBP2 in staphylococcal cell wall biosynthesis and susceptibility to antimicrobial agents []. This entry represents the C-terminal domain PBP4.; PDB: 1TVF_A 3HUN_A 3HUM_B.
Probab=28.19 E-value=1.1e+02 Score=17.48 Aligned_cols=33 Identities=6% Similarity=0.146 Sum_probs=21.4
Q ss_pred ecccceEEeCccccceeeCcc--eEEEeCCcEEEEE
Q psy16432 27 VRHQTPIIDGELEHEIKLEES--TWVFENAKTVMIN 60 (69)
Q Consensus 27 vkg~~~~i~G~L~~~V~~des--~Wtied~k~l~I~ 60 (69)
+.|+...++-+|+..|.-+.+ .|.++|| .|.+.
T Consensus 12 IdGk~y~v~kDlYd~VpK~~~~~~~~v~dg-~v~vd 46 (65)
T PF09211_consen 12 IDGKKYYVKKDLYDVVPKGKKPYKLKVKDG-KVHVD 46 (65)
T ss_dssp ETTEEEEESS-EEEEEETT--GSEEEEETT-EEEEE
T ss_pred ECCEEEEecCChhhhccCCCccceEEEeCC-EEEEe
Confidence 455566778889998887764 5777787 46664
No 62
>KOG3591|consensus
Probab=26.68 E-value=52 Score=21.86 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=15.7
Q ss_pred cccceeeCcceEEEeCCcEEEEEEEEc
Q psy16432 38 LEHEIKLEESTWVFENAKTVMINMEKI 64 (69)
Q Consensus 38 L~~~V~~des~Wtied~k~l~I~L~K~ 64 (69)
|+..|+++.=+=+|.....|.|.--|-
T Consensus 123 LP~~vdp~~V~S~LS~dGvLtI~ap~~ 149 (173)
T KOG3591|consen 123 LPEDVDPTSVTSTLSSDGVLTIEAPKP 149 (173)
T ss_pred CCCCCChhheEEeeCCCceEEEEccCC
Confidence 455666666555665433677765543
No 63
>PF08141 SspH: Small acid-soluble spore protein H family; InterPro: IPR012610 This family consists of the small acid-soluble spore proteins (SASP) of the H type (sspH). SspH are unique to spores of Bacillus subtilis and are expressed only in the forespore compartment during sporulation of this organism. The sspH genes are monocistronic and are recognised by the forespore-specific sigma factor for RNA polymerase - sigma-G. The specific role of this protein is unclear but is thought to play a role in sporulation under conditions different from that of the common laboratory tests of spore properties [].; GO: 0030436 asexual sporulation, 0042601 endospore-forming forespore
Probab=25.67 E-value=64 Score=17.91 Aligned_cols=18 Identities=11% Similarity=-0.016 Sum_probs=14.1
Q ss_pred ccCceEEEecccceEEeC
Q psy16432 19 MEQHPEMAVRHQTPIIDG 36 (69)
Q Consensus 19 ~~~~l~v~vkg~~~~i~G 36 (69)
++..+.|..+|.+++|++
T Consensus 12 S~~~i~V~y~G~pV~Ie~ 29 (58)
T PF08141_consen 12 SPDMIEVTYNGVPVWIEH 29 (58)
T ss_pred CCceEEEEECCEEEEEEE
Confidence 466778888999888875
No 64
>TIGR01399 hrcV type III secretion protein, HrcV family. Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane.
Probab=24.51 E-value=52 Score=26.54 Aligned_cols=35 Identities=9% Similarity=0.229 Sum_probs=24.4
Q ss_pred CCCCCCcccccceeEEEeccCceEEEecccceEEeCcc
Q psy16432 1 MGLPTSDEQKKQDVLKKFMEQHPEMAVRHQTPIIDGEL 38 (69)
Q Consensus 1 ~~ipvp~~~~~kdv~v~i~~~~l~v~vkg~~~~i~G~L 38 (69)
+|+++|+ ++-+| +.++.++...+.++|. ++-+|++
T Consensus 380 lG~~~P~-iri~d-n~~L~~~~Y~I~i~gv-~v~~g~i 414 (677)
T TIGR01399 380 LGIPLPG-IIIRV-GDSLPDNEFRILLYEV-PVLRDTI 414 (677)
T ss_pred hCCCCCc-eEEEE-CCCCCCCeEEEEECCE-EEEEEEE
Confidence 5889997 34333 3568889999999887 4555554
No 65
>PRK15337 type III secretion system protein InvA; Provisional
Probab=23.96 E-value=57 Score=26.36 Aligned_cols=35 Identities=6% Similarity=-0.020 Sum_probs=25.6
Q ss_pred CCCCCCcccccceeEEEeccCceEEEecccceEEeCcc
Q psy16432 1 MGLPTSDEQKKQDVLKKFMEQHPEMAVRHQTPIIDGEL 38 (69)
Q Consensus 1 ~~ipvp~~~~~kdv~v~i~~~~l~v~vkg~~~~i~G~L 38 (69)
+|+++|+ ++-+| ..++.++...+.++|. ++-.|++
T Consensus 392 lG~v~P~-Irird-n~~L~~~~Y~i~i~gv-~va~g~l 426 (686)
T PRK15337 392 YGVRLPD-ILLRY-SEGLDDNSIVVLINEI-RAAQFTI 426 (686)
T ss_pred hCCCCCc-eEEEe-CCCCCCCeEEEEECCE-EEEEEEE
Confidence 5899998 44444 3578899999999987 4666665
No 66
>PHA03323 nuclear egress membrane protein UL34; Provisional
Probab=23.93 E-value=1.2e+02 Score=21.88 Aligned_cols=34 Identities=6% Similarity=-0.046 Sum_probs=28.0
Q ss_pred CceEEEecccceEEeCccccceeeCcceEEEeCC
Q psy16432 21 QHPEMAVRHQTPIIDGELEHEIKLEESTWVFENA 54 (69)
Q Consensus 21 ~~l~v~vkg~~~~i~G~L~~~V~~des~Wtied~ 54 (69)
-.|+|.--|..++++|=|+.+.+.-..-||.|.+
T Consensus 78 pyirIQNTGvsVl~qG~f~~p~na~~~~it~~~~ 111 (272)
T PHA03323 78 PYIRIQNTGVSVLFQGFFFRPPNAPGAAITAEQN 111 (272)
T ss_pred ceEEEecCCeEEEEeecccCCCCCCCCccccccc
Confidence 3456666677789999999999999999999865
No 67
>TIGR01398 FlhA flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model.
Probab=23.78 E-value=57 Score=26.33 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=25.0
Q ss_pred CCCCCCcccccceeEEEeccCceEEEecccceEEeCcc
Q psy16432 1 MGLPTSDEQKKQDVLKKFMEQHPEMAVRHQTPIIDGEL 38 (69)
Q Consensus 1 ~~ipvp~~~~~kdv~v~i~~~~l~v~vkg~~~~i~G~L 38 (69)
+|+.+|+ ++-+| +..+.++...+.++|. ++-.|++
T Consensus 382 lG~~~P~-iri~d-n~~L~~~~Y~I~i~gv-~v~~g~l 416 (678)
T TIGR01398 382 YGFVMPV-IRIRD-NLRLPPNEYRIKIKGV-EVARGEL 416 (678)
T ss_pred hCCCCCc-eEEEe-CCCCCCCeEEEEECCE-EEEEEEE
Confidence 5889997 44444 3468889999999987 4666554
No 68
>PRK12720 secretion system apparatus protein SsaV; Provisional
Probab=23.57 E-value=56 Score=26.37 Aligned_cols=35 Identities=14% Similarity=0.322 Sum_probs=25.7
Q ss_pred CCCCCCcccccceeEEEeccCceEEEecccceEEeCcc
Q psy16432 1 MGLPTSDEQKKQDVLKKFMEQHPEMAVRHQTPIIDGEL 38 (69)
Q Consensus 1 ~~ipvp~~~~~kdv~v~i~~~~l~v~vkg~~~~i~G~L 38 (69)
+|+++|+- +-+| ...+.++...+.++|. ++-+|++
T Consensus 380 ~G~~~P~i-~i~d-n~~L~~~~Y~I~i~gv-~v~~g~l 414 (675)
T PRK12720 380 LGVPLPEV-NIEV-DPELTEKTLTVLLYQE-PVLSLSL 414 (675)
T ss_pred hCCCCCce-EEEe-CCCCCCCeEEEEECCE-EEEEEEe
Confidence 58999984 3333 3568899999999987 5666665
No 69
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=23.24 E-value=1.5e+02 Score=16.44 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=22.6
Q ss_pred ccCceEEE-ecccceEEeCccccceeeCcceEEEeCCcEEEEEEE
Q psy16432 19 MEQHPEMA-VRHQTPIIDGELEHEIKLEESTWVFENAKTVMINME 62 (69)
Q Consensus 19 ~~~~l~v~-vkg~~~~i~G~L~~~V~~des~Wtied~k~l~I~L~ 62 (69)
....+.|. ..|+ .+++|.| ....+.+++.+..+.|.+-
T Consensus 7 ~~sWv~V~d~dG~-~~~~~~l-----~~G~~~~~~~~~~~~i~iG 45 (77)
T PF13464_consen 7 GDSWVEVTDADGK-VLFSGTL-----KAGETKTFEGKEPFRIRIG 45 (77)
T ss_pred CCeEEEEEeCCCc-Eeeeeee-----CCCcEEEEeCCCCEEEEEe
Confidence 34566666 5554 5666665 4455666665555666653
No 70
>PF10057 DUF2294: Uncharacterized conserved protein (DUF2294); InterPro: IPR018745 This domain of unknown function is found in a family of hypothetical bacterial proteins with no known function. It is also found at the C terminus of proteins provisionally annotated as response regulators.
Probab=22.95 E-value=1.1e+02 Score=18.64 Aligned_cols=22 Identities=0% Similarity=-0.043 Sum_probs=19.0
Q ss_pred cccceeEEEeccCceEEEeccc
Q psy16432 9 QKKQDVLKKFMEQHPEMAVRHQ 30 (69)
Q Consensus 9 ~~~kdv~v~i~~~~l~v~vkg~ 30 (69)
-.+++++|.|..+.+.|.++|.
T Consensus 26 kGP~~i~~~i~~~~iiv~l~g~ 47 (118)
T PF10057_consen 26 KGPKSIKVTISDDMIIVRLEGF 47 (118)
T ss_pred CCCcEEEEEEECCEEEEEEECC
Confidence 3478899999999999999884
No 71
>PRK12792 flhA flagellar biosynthesis protein FlhA; Reviewed
Probab=22.47 E-value=65 Score=26.12 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=25.0
Q ss_pred CCCCCCcccccceeEEEeccCceEEEecccceEEeCcc
Q psy16432 1 MGLPTSDEQKKQDVLKKFMEQHPEMAVRHQTPIIDGEL 38 (69)
Q Consensus 1 ~~ipvp~~~~~kdv~v~i~~~~l~v~vkg~~~~i~G~L 38 (69)
+|+++|+- +-+| +.++.++...+.++|. ++-+|++
T Consensus 396 ~G~~~P~i-ri~d-n~~L~~~~Y~I~i~gv-~v~~g~l 430 (694)
T PRK12792 396 YGFVVPEI-KLTD-SLSLPPKTYQIKIHGT-VVATQEL 430 (694)
T ss_pred cCCCCCce-EEEe-CCCCCCCeEEEEECCE-EEEEEEe
Confidence 58899973 4444 3568899999999987 4666654
No 72
>TIGR02861 SASP_H small acid-soluble spore protein, H-type. This model is derived from pfam08141 but has been expanded to include in the seed corresponding proteins from three species of Clostridium. Members of this family should occur only in endospore-forming bacteria, typically with two members per genome, but may be absent from the genomes of some endospore-forming bacteria. SspH (previously designated YfjU) was shown to be expressed specifically in spores of Bacillus subtilis.
Probab=21.78 E-value=82 Score=17.48 Aligned_cols=18 Identities=6% Similarity=0.014 Sum_probs=13.9
Q ss_pred ccCceEEEecccceEEeC
Q psy16432 19 MEQHPEMAVRHQTPIIDG 36 (69)
Q Consensus 19 ~~~~l~v~vkg~~~~i~G 36 (69)
++..+.|..+|.+++|++
T Consensus 12 S~~~i~V~Y~G~pV~Ie~ 29 (58)
T TIGR02861 12 SPEMINVTYKGVPVYIEH 29 (58)
T ss_pred CccceEEEECCEEEEEEE
Confidence 456678888998888875
No 73
>PRK01625 sspH acid-soluble spore protein H; Provisional
Probab=21.55 E-value=85 Score=17.56 Aligned_cols=18 Identities=6% Similarity=0.038 Sum_probs=13.9
Q ss_pred ccCceEEEecccceEEeC
Q psy16432 19 MEQHPEMAVRHQTPIIDG 36 (69)
Q Consensus 19 ~~~~l~v~vkg~~~~i~G 36 (69)
++..+.|...|.+++|++
T Consensus 12 S~~~i~V~Y~G~pV~Iq~ 29 (59)
T PRK01625 12 SSSRIDVTYEGVPVWIES 29 (59)
T ss_pred CCcceEEEECCEEEEEEE
Confidence 466788888888888775
No 74
>PF13757 VIT_2: Vault protein inter-alpha-trypsin domain
Probab=20.70 E-value=1.1e+02 Score=17.87 Aligned_cols=28 Identities=7% Similarity=0.088 Sum_probs=19.4
Q ss_pred CCCCcccccceeEEEeccCceEEEeccc
Q psy16432 3 LPTSDEQKKQDVLKKFMEQHPEMAVRHQ 30 (69)
Q Consensus 3 ipvp~~~~~kdv~v~i~~~~l~v~vkg~ 30 (69)
+|||++..---+.-.|..+.+.+.++.+
T Consensus 50 fPL~e~~~V~gfea~i~gr~v~~~v~~r 77 (78)
T PF13757_consen 50 FPLDEGATVVGFEADIGGRIVTVQVQDR 77 (78)
T ss_pred EecCCCcEEEEEEEEeCCcEEEEEeeec
Confidence 4777777766667777777777766543
No 75
>PF13785 DUF4178: Domain of unknown function (DUF4178)
Probab=20.56 E-value=2.1e+02 Score=17.25 Aligned_cols=52 Identities=8% Similarity=0.264 Sum_probs=35.7
Q ss_pred EEEeccCceEEEecccceEEeCccccceeeCcce--EEEeCCcEEEEEEEEcccc
Q psy16432 15 LKKFMEQHPEMAVRHQTPIIDGELEHEIKLEEST--WVFENAKTVMINMEKILSL 67 (69)
Q Consensus 15 ~v~i~~~~l~v~vkg~~~~i~G~L~~~V~~des~--Wtied~k~l~I~L~K~~~~ 67 (69)
.+.+..+...+.-.+. ....|+++..+.+.+.+ |...++....++++.....
T Consensus 74 ~~~~~g~~y~~~e~~~-a~~~ge~~~~~~~g~~~~~~dy~~~~g~~Ls~E~~~~e 127 (140)
T PF13785_consen 74 TVTYDGKRYRLDESGT-ARVEGEFPWGVRVGDEARYWDYRSPDGRFLSIEQWDGE 127 (140)
T ss_pred EEEECCeEEEEEEeEE-EEEEEEecccCCCCCEEEEEEEEcCCCCEEEEEecCCC
Confidence 4566777777766665 45899999888777654 6666543367888876654
No 76
>PF06594 HCBP_related: Haemolysin-type calcium binding protein related domain; InterPro: IPR010566 This family consists of a number of bacteria specific domains, which are found in haemolysin-type calcium binding proteins. This family is found in conjunction with IPR001343 from INTERPRO and is often found in multiple copies.
Probab=20.19 E-value=1.2e+02 Score=15.18 Aligned_cols=11 Identities=9% Similarity=0.220 Sum_probs=6.3
Q ss_pred eeeCcceEEEe
Q psy16432 42 IKLEESTWVFE 52 (69)
Q Consensus 42 V~~des~Wtie 52 (69)
.-.|.++|+.+
T Consensus 31 ~FaDGt~w~~~ 41 (43)
T PF06594_consen 31 EFADGTVWTRA 41 (43)
T ss_pred EEcCCCEecHH
Confidence 34566667643
No 77
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=20.19 E-value=1.1e+02 Score=17.41 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=22.2
Q ss_pred EeccCceEEEeccc-----ceEEeCccccceeeCc
Q psy16432 17 KFMEQHPEMAVRHQ-----TPIIDGELEHEIKLEE 46 (69)
Q Consensus 17 ~i~~~~l~v~vkg~-----~~~i~G~L~~~V~~de 46 (69)
.|.+..|+|.-+.+ ++++.++|-+.|..|+
T Consensus 12 ~f~n~~i~v~~rpk~~dsaEV~~g~EfiGvi~~De 46 (63)
T PF11324_consen 12 TFGNPGITVKARPKKDDSAEVYIGDEFIGVIYRDE 46 (63)
T ss_pred HhCCCceEEEcCCCCCCceEEEeCCEEEEEEEeec
Confidence 45677777776532 5799999999997775
No 78
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=20.09 E-value=1.6e+02 Score=16.52 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=18.2
Q ss_pred EEEeccCceEEEecccceEEeCccccceeeCcceEEEeCC
Q psy16432 15 LKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENA 54 (69)
Q Consensus 15 ~v~i~~~~l~v~vkg~~~~i~G~L~~~V~~des~Wtied~ 54 (69)
.+.+.+....+...+ ...|.-+..+. |..=+|...+|
T Consensus 2 ~v~v~p~~~~v~~G~-~~~l~C~~~G~--p~~i~W~~~~~ 38 (92)
T cd04977 2 QVDIVPSQGEISVGE-SKFFLCQVIGE--PKDISWFSPNG 38 (92)
T ss_pred eEEEecCcEEECCCC-eEEEEEEeEee--CCeEEEECCCC
Confidence 455556665555433 24555544443 23455765444
Done!