RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16432
(69 letters)
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein
cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B*
2cr0_A
Length = 121
Score = 50.7 bits (121), Expect = 3e-10
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 3 LPTSDEQKKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINME 62
+ K +D++ +H + ++ Q IIDGEL +E+K+EES+W+ + V +++E
Sbjct: 34 FCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIADGAVVTVHLE 93
Query: 63 KI 64
KI
Sbjct: 94 KI 95
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transport protein; NMR {Mus musculus} SCOP:
b.15.1.4
Length = 131
Score = 48.0 bits (114), Expect = 5e-09
Identities = 23/62 (37%), Positives = 40/62 (64%)
Query: 3 LPTSDEQKKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINME 62
S K +DV+ +H + ++ Q P++DGEL +E+K+EES+W+ E+ K V +++E
Sbjct: 25 FRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLE 84
Query: 63 KI 64
KI
Sbjct: 85 KI 86
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Length = 124
Score = 45.4 bits (107), Expect = 4e-08
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 9 QKKQDVLKKFMEQHPEMAVRH---QTPIIDGELEHEIKLEESTWVFENAKTVMINMEKI 64
K + V +A+ + +++G+L H+I E S W E K V++N+ K+
Sbjct: 42 VKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKV 100
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2,
structure initiative; 1.66A {Encephalitozoon cuniculi}
Length = 131
Score = 36.0 bits (83), Expect = 2e-04
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 10 KKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEK 63
+ + + + + + + +IDGEL HE+ + WV V +N+ K
Sbjct: 27 DSSAIKIRMVGKKICVKNQGE-IVIDGELLHEVDVSSLWWVING-DVVDVNVTK 78
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement
protein, structural genomics, joint center for
structural genomics, JCSG; 1.95A {Mus musculus}
Length = 157
Score = 34.6 bits (79), Expect = 7e-04
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 3 LPTSDEQKKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINME 62
+ + QD+ +H +AV + I+ G+L +E TW E+ K V I +
Sbjct: 29 VQVPPGTRAQDIQCGLQSRHVALAVGGR-EILKGKLFDSTIADEGTWTLEDRKMVRIVLT 87
Query: 63 K 63
K
Sbjct: 88 K 88
Score = 32.7 bits (74), Expect = 0.003
Identities = 4/21 (19%), Positives = 13/21 (61%)
Query: 5 TSDEQKKQDVLKKFMEQHPEM 25
D+ +++ L++F +++P
Sbjct: 111 VQDQMQRKLTLERFQKENPGF 131
>1gxs_A P-(S)-hydroxymandelonitrIle lyase chain A; inhibitor complex,
cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum
bicolor} SCOP: c.69.1.5
Length = 270
Score = 25.8 bits (57), Expect = 1.2
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 2 GLPTSDEQKKQDV---LKKFMEQHPE 24
L D++ QD L K+ E+ P
Sbjct: 121 DLSMGDDKMAQDTYTFLVKWFERFPH 146
>2qsx_A Putative transcriptional regulator, LYSR family; the putative
transcriptional regulator, PSI-2, structure initiative,
MCSG; 1.64A {Vibrio parahaemolyticus}
Length = 218
Score = 24.9 bits (55), Expect = 2.3
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 15 LKKFMEQHPEMAVR 28
+ F ++HP + V+
Sbjct: 38 INDFHQRHPNIRVK 51
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.2 bits (52), Expect = 4.6
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 26 AVRHQTPII--DGELEHEIKLEESTWVF 51
+ R P+ G LEH + + +++
Sbjct: 5 STR---PLTLSHGSLEHVLLVPTASFFI 29
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein,
periplasmic-binding protein, maltose, SUG binding
protein; 2.20A {Xanthomonas axonopodis PV}
Length = 458
Score = 23.9 bits (52), Expect = 5.1
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 12 QDVLKKFMEQHPEMAVRHQT 31
+++ F +Q+P + V Q
Sbjct: 45 AELVADFEKQNPTIHVDVQN 64
>2b3f_A Glucose-binding protein; protein-carbohydrate complex,
periplasmic binding protein, galactose, GBP, sugar
binding protein; HET: GAL; 1.56A {Thermus thermophilus
HB27} PDB: 2b3b_A*
Length = 400
Score = 24.0 bits (52), Expect = 5.2
Identities = 5/28 (17%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 5 TSDEQKK-QDVLKKFMEQHPEMAVRHQT 31
DE + +++ + +++P + V + T
Sbjct: 10 AGDEGPALEALIRLYKQKYPGVEVINAT 37
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic
binding protein, pectin degradation, trigalacturonic
acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB:
2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Length = 408
Score = 23.6 bits (51), Expect = 7.8
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 12 QDVLKKFMEQHPEMAVRHQT 31
L++F +QHP + V+ +
Sbjct: 23 LKALEEFHKQHPNINVKAEY 42
>3io5_A Recombination and repair protein; storage dimer, inactive
conformation, RECA like core domain, binding, DNA
damage, DNA recombination; 2.40A {Enterobacteria phage
T4}
Length = 333
Score = 23.2 bits (50), Expect = 8.0
Identities = 4/51 (7%), Positives = 15/51 (29%)
Query: 16 KKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINMEKILS 66
K + + IK ++ + V ++++++
Sbjct: 282 KSWRAKDTNCTTFWGPLFKHQPFRDAIKRAYQLGAIDSNEIVEAEVDELIN 332
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane
localization, membrane protein; 1.90A {Saccharomyces
cerevisiae} PDB: 3ulc_A
Length = 121
Score = 23.0 bits (49), Expect = 8.2
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 10 KKQDVLKKFMEQHPEMAVRHQ-TPIIDGELEHEIKLEESTWVFENAKTVMINMEKILS 66
K V ++ Q +H+ T IDG+ + + E +N KT +++ +++
Sbjct: 12 HKYKVWRR---QQMSFINKHERTLAIDGDYIYIVPPEGRIHWHDNVKTKSLHISQVVL 66
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 23.3 bits (49), Expect = 8.5
Identities = 5/39 (12%), Positives = 9/39 (23%), Gaps = 8/39 (20%)
Query: 31 TPIIDGELEHEIKLEESTWVFENAKTVMINMEKILSLFS 69
T + I L+ + + SL
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEV--------KSLLL 308
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.362
Gapped
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,016,406
Number of extensions: 46680
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 20
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.6 bits)