RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16432
         (69 letters)



>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 131

 Score = 46.8 bits (111), Expect = 5e-09
 Identities = 22/61 (36%), Positives = 39/61 (63%)

Query: 3  LPTSDEQKKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEESTWVFENAKTVMINME 62
             S   K +DV+     +H  + ++ Q P++DGEL +E+K+EES+W+ E+ K V +++E
Sbjct: 25 FRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLE 84

Query: 63 K 63
          K
Sbjct: 85 K 85


>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3
          (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 124

 Score = 38.8 bits (90), Expect = 4e-06
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 6  SDEQKKQDVLKKFMEQHPEMAVR---HQTPIIDGELEHEIKLEESTWVFENAKTVMINME 62
              K + V          +A+     +  +++G+L H+I  E S W  E  K V++N+ 
Sbjct: 39 KHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLS 98

Query: 63 K 63
          K
Sbjct: 99 K 99


>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog,
          gst1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 29.9 bits (67), Expect = 0.008
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 10 KKQDVLKKFMEQHPEMAVR---HQTPIIDGELEHEIKLEESTWVFENAKTVMINMEK 63
          +K DV  +F E+     V+    +   +  EL H I  E+ST+   + K + I ++K
Sbjct: 24 QKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTK-IEIKLKK 79


>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 110

 Score = 25.4 bits (55), Expect = 0.49
 Identities = 4/31 (12%), Positives = 11/31 (35%)

Query: 33 IIDGELEHEIKLEESTWVFENAKTVMINMEK 63
          + + +L H I   +S     +   +    + 
Sbjct: 50 LNEIDLFHCIDPNDSKHKRTDRSILCCLRKG 80


>d2g8la1 e.50.1.1 (A:1-284) Hypothetical protein PH1575
          {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 284

 Score = 24.5 bits (53), Expect = 1.1
 Identities = 6/45 (13%), Positives = 14/45 (31%)

Query: 3  LPTSDEQKKQDVLKKFMEQHPEMAVRHQTPIIDGELEHEIKLEES 47
          + T D   ++  +    +   +    +  P I G L      +  
Sbjct: 21 MATQDMDIRRRAMILAAKLLAKEYNENAIPAIAGSLIFLELYKFL 65


>d1i8aa_ b.1.9.2 (A:) Xylanase 10A {Thermotoga maritima [TaxId:
          2336]}
          Length = 189

 Score = 23.6 bits (50), Expect = 2.3
 Identities = 6/14 (42%), Positives = 11/14 (78%)

Query: 26 AVRHQTPIIDGELE 39
            ++ TP+IDGE++
Sbjct: 4  TAKYGTPVIDGEID 17


>d1ckqa_ c.52.1.1 (A:) Restriction endonuclease EcoRI {Escherichia
          coli [TaxId: 562]}
          Length = 261

 Score = 22.6 bits (48), Expect = 4.7
 Identities = 7/32 (21%), Positives = 17/32 (53%)

Query: 12 QDVLKKFMEQHPEMAVRHQTPIIDGELEHEIK 43
          + V K    ++P+++ R++  I   E+   +K
Sbjct: 24 KLVKKALSNEYPQLSFRYRDSIKKTEINEALK 55


>d3thia_ c.94.1.1 (A:) Thiaminase I {Paenibacillus thiaminolyticus
          [TaxId: 49283]}
          Length = 362

 Score = 22.7 bits (47), Expect = 5.4
 Identities = 4/25 (16%), Positives = 10/25 (40%)

Query: 7  DEQKKQDVLKKFMEQHPEMAVRHQT 31
            + +  VL ++  Q P + +    
Sbjct: 14 PARFQAAVLDQWQRQEPGVKLEFTD 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.130    0.362 

Gapped
Lambda     K      H
   0.267   0.0405    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 248,821
Number of extensions: 9062
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 16
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)