Query psy16433
Match_columns 297
No_of_seqs 159 out of 297
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 21:10:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1473|consensus 99.4 1.1E-12 2.5E-17 136.9 9.7 119 9-131 194-336 (1414)
2 PF02791 DDT: DDT domain; Int 98.5 2.1E-07 4.5E-12 67.7 4.6 52 9-64 6-57 (61)
3 smart00571 DDT domain in diffe 98.1 4.7E-06 1E-10 61.0 4.4 52 9-64 6-59 (63)
4 PF15613 WHIM2: WSTF, HB1, Itc 97.8 1.8E-05 3.9E-10 52.2 3.3 27 139-165 1-36 (38)
5 PF15612 WHIM1: WSTF, HB1, Itc 97.5 0.00012 2.6E-09 50.7 3.7 35 98-132 11-45 (50)
6 COG5397 Uncharacterized conser 65.5 4.3 9.3E-05 38.3 2.1 20 135-156 30-49 (349)
7 KOG1472|consensus 65.0 3.4 7.4E-05 43.6 1.5 56 240-296 105-161 (720)
8 KOG1245|consensus 60.4 4.1 9E-05 46.3 1.2 30 136-165 820-851 (1404)
9 PF15614 WHIM3: WSTF, HB1, Itc 53.7 22 0.00048 24.4 3.5 33 249-281 4-36 (46)
10 PF04282 DUF438: Family of unk 46.8 11 0.00024 28.2 1.3 45 18-62 20-65 (71)
11 PF05071 NDUFA12: NADH ubiquin 41.6 14 0.00029 29.6 1.1 15 142-156 3-17 (105)
12 KOG3926|consensus 40.5 1.3E+02 0.0027 28.7 7.4 114 4-120 90-221 (332)
13 PF09292 Neil1-DNA_bind: Endon 28.9 30 0.00065 22.7 1.0 12 146-157 22-33 (39)
14 KOG3388|consensus 28.6 30 0.00064 28.7 1.1 20 139-158 77-97 (136)
15 PLN03095 NADH:ubiquinone oxido 25.0 36 0.00077 27.9 1.0 18 139-156 9-26 (115)
16 PRK08183 NADH dehydrogenase; V 23.0 41 0.00089 28.3 1.0 19 139-157 25-43 (133)
17 PF12006 DUF3500: Protein of u 20.9 2.7E+02 0.0058 26.6 6.2 68 98-165 215-288 (313)
No 1
>KOG1473|consensus
Probab=99.38 E-value=1.1e-12 Score=136.88 Aligned_cols=119 Identities=27% Similarity=0.413 Sum_probs=97.1
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCHHHHHHHhccCCCCCchhhhHHHHHHHHcccccCCC---------------Cc-----
Q psy16433 9 EVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLCGCYGRN---------------HG----- 68 (297)
Q Consensus 9 e~a~I~~Fl~~F~~~l~L~~f~~eeLE~aLl~p~~~d~~~~lL~~l~~~LL~~~~~~~---------------r~----- 68 (297)
...+|+.||..|+..|.|.+|.+|||..||..-+ .+.+|+++|++||++|+... +.
T Consensus 194 ~alsIYevLRsF~~~LrisPF~feDFcaAL~~~~----~ssLlaeVHvaLLrA~lr~eD~~~Thfs~~d~KdsvnI~l~l 269 (1414)
T KOG1473|consen 194 DALSIYEVLRSFSRQLRISPFRFEDFCAALISHE----QSSLLAEVHVALLRALLREEDRLSTHFSPLDSKDSVNIDLYL 269 (1414)
T ss_pred HHHHHHHHHHhhcceEEeCCccHHHHHHHHHhcC----chhHHHHHHHHHHHHHhhhhhhcccccCccccccceeeeeeh
Confidence 3568999999999999999999999999998643 57899999999999986431 11
Q ss_pred cccccHHHHHHHHHHhhh----hhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcCchhHHHHhc
Q psy16433 69 ISIFNYQMFLRRLFRTKC----REYGRENPFDSDIDFQFLPLRTKVEILQALCDFRLDADDVLDCLK 131 (297)
Q Consensus 69 i~~~~we~~L~~~~~~~~----~e~~~~nPl~~~~~f~~L~~~~Kl~ILk~Lce~~l~~~~vr~~ik 131 (297)
|..-+|-.+|+.++.+.. +-+...|||-.+.+|-..++..|++||+.||+-.|+.+++|+.|.
T Consensus 270 iD~lTWPevLrqY~ea~~~ad~~v~~~~n~fv~~~eY~~~pv~~klkILQ~L~Dq~l~~~s~R~e~~ 336 (1414)
T KOG1473|consen 270 IDTLTWPEVLRQYFEADKHADGPVWDIFNPFVVEDEYPYRPVSNKLKILQFLCDQFLTVNSLRDEID 336 (1414)
T ss_pred hccccHHHHHHHHHHhccccCcchhhhhccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 123479999999997542 122246899878899999999999999999999999988887653
No 2
>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is found in foetal Alzheimer antigen and several hypothetical and uncharacterised proteins.
Probab=98.47 E-value=2.1e-07 Score=67.69 Aligned_cols=52 Identities=27% Similarity=0.443 Sum_probs=45.2
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCHHHHHHHhccCCCCCchhhhHHHHHHHHcccccC
Q psy16433 9 EVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLCGCYG 64 (297)
Q Consensus 9 e~a~I~~Fl~~F~~~l~L~~f~~eeLE~aLl~p~~~d~~~~lL~~l~~~LL~~~~~ 64 (297)
++..|++||+.|+++|+|++|++++|+.||....+ +.++.+||++||+.+..
T Consensus 6 ~~L~v~~Fl~~F~~~L~L~~ftlddf~~AL~~~~~----~~ll~ei~~~LL~~l~~ 57 (61)
T PF02791_consen 6 DLLMVWEFLNTFGEVLGLSPFTLDDFEQALLCNDP----SGLLAEIHCALLKALLA 57 (61)
T ss_pred HHHHHHHHHHHHHHHHcCCcCCHHHHHHHHcCCCc----chhHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999997542 44999999999988643
No 3
>smart00571 DDT domain in different transcription and chromosome remodeling factors.
Probab=98.08 E-value=4.7e-06 Score=60.98 Aligned_cols=52 Identities=25% Similarity=0.324 Sum_probs=44.9
Q ss_pred cHHHHHHHHHHHHhhcCCCCCC--HHHHHHHhccCCCCCchhhhHHHHHHHHcccccC
Q psy16433 9 EVPSIAHFCSLFRAAFNLLDFD--IEELEEALLTDGTEDTGSSLLQELIVRLLCGCYG 64 (297)
Q Consensus 9 e~a~I~~Fl~~F~~~l~L~~f~--~eeLE~aLl~p~~~d~~~~lL~~l~~~LL~~~~~ 64 (297)
.+..|++||+.|+..|.|++|+ +++|+.||.... +..+|.++|+.||+.++.
T Consensus 6 d~l~V~eFl~~F~~~L~L~~f~~~l~~f~~Al~~~~----~~~ll~ei~~~LL~~i~~ 59 (63)
T smart00571 6 DLLMVYEFLRSFGKVLGLSPFRATLEDFIAALKCRD----QNGLLTEVHVVLLRAILK 59 (63)
T ss_pred HHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHhcCC----cchHHHHHHHHHHHHHHh
Confidence 3568999999999999999999 999999998632 357999999999988643
No 4
>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2
Probab=97.84 E-value=1.8e-05 Score=52.20 Aligned_cols=27 Identities=37% Similarity=0.763 Sum_probs=21.6
Q ss_pred ccccccccCCCcEEEEEe---------CcEEEEecC
Q psy16433 139 RLQPLGYDRNQSAFWYFY---------GTRLYREDY 165 (297)
Q Consensus 139 R~ePlG~D~~g~~Yw~f~---------d~RLYrE~~ 165 (297)
|.+|||.|+.||+||+|. ..|++-+..
T Consensus 1 R~~pLG~DR~~NrYwwf~~s~~~~~~~~~~~~v~~~ 36 (38)
T PF15613_consen 1 RLKPLGKDRYGNRYWWFSSSSSNSQYYNGGRFVEQG 36 (38)
T ss_pred CcccccccCCCceEEEEecccccCCCCCceEEEEeC
Confidence 789999999999999992 146666654
No 5
>PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B.
Probab=97.50 E-value=0.00012 Score=50.74 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=30.5
Q ss_pred CCCCCCCChhhHHHHHHHHHHhhcCchhHHHHhcc
Q psy16433 98 DIDFQFLPLRTKVEILQALCDFRLDADDVLDCLKN 132 (297)
Q Consensus 98 ~~~f~~L~~~~Kl~ILk~Lce~~l~~~~vr~~ik~ 132 (297)
..+|.+|++..|+.||++||+|.+++..||+.|.+
T Consensus 11 ~~~y~~L~~~~kl~iL~~L~~~~l~s~~vr~~i~~ 45 (50)
T PF15612_consen 11 TGEYYELSPEEKLEILRALCDQLLSSSSVRNEIEE 45 (50)
T ss_dssp CSTCCCS-HHHHHHHHHHHHHHHCC-CCHHHHHHH
T ss_pred cCCcccCCHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 57899999999999999999999999999988765
No 6
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=65.48 E-value=4.3 Score=38.28 Aligned_cols=20 Identities=35% Similarity=0.821 Sum_probs=16.8
Q ss_pred CCccccccccccCCCcEEEEEe
Q psy16433 135 SDSLRLQPLGYDRNQSAFWYFY 156 (297)
Q Consensus 135 ~~~lR~ePlG~D~~g~~Yw~f~ 156 (297)
+..-|..|. |++|+.||||+
T Consensus 30 ~~e~rftp~--~~kgR~YWYfd 49 (349)
T COG5397 30 PAEGRFTPT--DRKGRVYWYFD 49 (349)
T ss_pred CCCCccccc--ccCCceEEEEe
Confidence 446677887 99999999997
No 7
>KOG1472|consensus
Probab=64.97 E-value=3.4 Score=43.63 Aligned_cols=56 Identities=20% Similarity=0.097 Sum_probs=51.8
Q ss_pred CCCCceEEEecCHHHHHHHHHHHhcCCChhhHHHHHHhhhccCCCCchhHHHHh-hhc
Q psy16433 240 LGAGTWQVVCYTEEDWTKLAEATADAPCKEEKTLHHVLTEDFLPEIPRLFEEKR-NLQ 296 (297)
Q Consensus 240 ~~~~~We~v~~t~ee~~~l~~~~~~s~~~~ek~L~~~l~~~~lP~i~~~~~~ke-r~q 296 (297)
.+..+|.+.| |+++|...++++..+....++.|++.+...+.|.+..+.+++. |.|
T Consensus 105 p~~e~~~~~~-~~~~~~~~~~~~~~~e~q~~~e~~k~~~~~~n~~~le~~a~~~~~~~ 161 (720)
T KOG1472|consen 105 PGFEEPSLLQ-NLSLVRYKTESLSERESQRERELAKLLLLFINPEILESPAQKRKRPQ 161 (720)
T ss_pred CCCCCcccch-hhhhhhhhcccccchhHHHHHHHHHHHHhhccHHHhcchhhhccccc
Confidence 5788999999 9999999999999999999999999999999999999998876 554
No 8
>KOG1245|consensus
Probab=60.42 E-value=4.1 Score=46.32 Aligned_cols=30 Identities=40% Similarity=0.724 Sum_probs=24.2
Q ss_pred CccccccccccCCCcEEEEEeC--cEEEEecC
Q psy16433 136 DSLRLQPLGYDRNQSAFWYFYG--TRLYREDY 165 (297)
Q Consensus 136 ~~lR~ePlG~D~~g~~Yw~f~d--~RLYrE~~ 165 (297)
..+|..|+|.|+++++||+|.+ ..++.|..
T Consensus 820 ~~~r~~~lG~DR~~rRYwvl~~~~~~~~ie~i 851 (1404)
T KOG1245|consen 820 LVLRLNPLGKDRNYRRYWVLPDLVSGLFIEEI 851 (1404)
T ss_pred HHhhccccccchhhceeeeeeccCcccchhHH
Confidence 3689999999999999999995 45655543
No 9
>PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3
Probab=53.74 E-value=22 Score=24.43 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=28.6
Q ss_pred ecCHHHHHHHHHHHhcCCChhhHHHHHHhhhcc
Q psy16433 249 CYTEEDWTKLAEATADAPCKEEKTLHHVLTEDF 281 (297)
Q Consensus 249 ~~t~ee~~~l~~~~~~s~~~~ek~L~~~l~~~~ 281 (297)
+.+.+++++|+..+...+...|+.|.+.|....
T Consensus 4 ~~~~e~ld~L~~aL~~prG~RE~~L~~~L~~~~ 36 (46)
T PF15614_consen 4 YDDPEELDELLKALENPRGKRESKLKKELDKHR 36 (46)
T ss_pred ccCHHHHHHHHHHHcCcccHhHHHHHHHHHHHh
Confidence 578899999999997788889999999998754
No 10
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=46.80 E-value=11 Score=28.23 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=33.1
Q ss_pred HHHHhhc-CCCCCCHHHHHHHhccCCCCCchhhhHHHHHHHHcccc
Q psy16433 18 SLFRAAF-NLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLCGC 62 (297)
Q Consensus 18 ~~F~~~l-~L~~f~~eeLE~aLl~p~~~d~~~~lL~~l~~~LL~~~ 62 (297)
..|...| +++...|...|.+|+..+..-....-|.++|.+|+++-
T Consensus 20 ~~F~~~~~~Vs~~EI~~~Eq~Li~eG~~~eeiq~LCdvH~~lf~~~ 65 (71)
T PF04282_consen 20 EEFKKLFSDVSASEISAAEQELIQEGMPVEEIQKLCDVHAALFKGS 65 (71)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHH
Confidence 4566666 55777888999999986532224568899999999873
No 11
>PF05071 NDUFA12: NADH ubiquinone oxidoreductase subunit NDUFA12; InterPro: IPR007763 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. this entry represents the 17.2kDa subunit from NADH:ubiquinone oxidoreductase and its homologues []. This subunit is believed to be one of the 36 structural complex I proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0009055 electron carrier activity, 0016020 membrane
Probab=41.55 E-value=14 Score=29.62 Aligned_cols=15 Identities=13% Similarity=0.135 Sum_probs=13.7
Q ss_pred cccccCCCcEEEEEe
Q psy16433 142 PLGYDRNQSAFWYFY 156 (297)
Q Consensus 142 PlG~D~~g~~Yw~f~ 156 (297)
-+|.|..||+||-+.
T Consensus 3 lVG~D~~GN~YyE~~ 17 (105)
T PF05071_consen 3 LVGTDEFGNKYYENP 17 (105)
T ss_pred EeeEeCCCCEEEeec
Confidence 379999999999988
No 12
>KOG3926|consensus
Probab=40.45 E-value=1.3e+02 Score=28.68 Aligned_cols=114 Identities=18% Similarity=0.284 Sum_probs=65.0
Q ss_pred hhhcccHHHHHHHHHHHHhhcCCCCCC-------HHHHHHHhccCCCCCchhhhHHHHHHHHcccc------cCCCCcc-
Q psy16433 4 IQSWWEVPSIAHFCSLFRAAFNLLDFD-------IEELEEALLTDGTEDTGSSLLQELIVRLLCGC------YGRNHGI- 69 (297)
Q Consensus 4 LRs~We~a~I~~Fl~~F~~~l~L~~f~-------~eeLE~aLl~p~~~d~~~~lL~~l~~~LL~~~------~~~~r~i- 69 (297)
++..=.|-+||.|+.+-.+- +|+.++ +.-||.-+.+-..++.+..++.+|...|-..+ .+...=+
T Consensus 90 v~D~rrFnyickllqliak~-ql~sLsg~Aqknll~ile~v~~kv~ddqqn~~~irdL~q~l~~~l~~~nq~cg~~~Lvs 168 (332)
T KOG3926|consen 90 VRDRRRFNYICKLLQLIAKS-QLTSLSGSAQKNLLNILEKVVSKVLDDQQNPRLIRDLLQKLEHILCQLNQKCGKSVLVS 168 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHc-cCCCCchHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhhhCcccccc
Confidence 34444677888888887664 444443 34566655543333445667777765553221 0111111
Q ss_pred ccccHHHHHHHHHHhh--h--hhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHhh
Q psy16433 70 SIFNYQMFLRRLFRTK--C--REYGRENPFDSDIDFQFLPLRTKVEILQALCDFR 120 (297)
Q Consensus 70 ~~~~we~~L~~~~~~~--~--~e~~~~nPl~~~~~f~~L~~~~Kl~ILk~Lce~~ 120 (297)
+..-|...+...+... . .+.....| .+-.|+||+...-+.||+.|-|.+
T Consensus 169 n~~~w~~~m~til~~qqv~~~iqi~~~~~--~~ltl~dLP~e~vl~Il~rlsDh~ 221 (332)
T KOG3926|consen 169 NINLWKERMETILRWQQVLSQIQITEPDP--AGLTLHDLPLECVLNILLRLSDHR 221 (332)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcccCCCc--CCCCcccchHHHHHHHHHHccCcc
Confidence 2345777776665411 1 12212233 357899999999999999887754
No 13
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=28.87 E-value=30 Score=22.74 Aligned_cols=12 Identities=33% Similarity=0.734 Sum_probs=8.2
Q ss_pred cCCCcEEEEEeC
Q psy16433 146 DRNQSAFWYFYG 157 (297)
Q Consensus 146 D~~g~~Yw~f~d 157 (297)
|++|++-|+.+|
T Consensus 22 D~~gRTiWFqGd 33 (39)
T PF09292_consen 22 DRNGRTIWFQGD 33 (39)
T ss_dssp -TTS-EEEESS-
T ss_pred ccCCCEEEeeCC
Confidence 999999998765
No 14
>KOG3388|consensus
Probab=28.60 E-value=30 Score=28.73 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=14.9
Q ss_pred ccccccccCCCcEEEE-EeCc
Q psy16433 139 RLQPLGYDRNQSAFWY-FYGT 158 (297)
Q Consensus 139 R~ePlG~D~~g~~Yw~-f~d~ 158 (297)
=+.-|+.|..|-.||| |+|+
T Consensus 77 PiDvl~v~~~G~~~YyaFgGC 97 (136)
T KOG3388|consen 77 PIDVLEVDSEGGDYYYAFGGC 97 (136)
T ss_pred CceEEEEecCCceEEEeeCcc
Confidence 3556788998877777 8884
No 15
>PLN03095 NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional
Probab=25.01 E-value=36 Score=27.95 Aligned_cols=18 Identities=11% Similarity=0.034 Sum_probs=14.9
Q ss_pred ccccccccCCCcEEEEEe
Q psy16433 139 RLQPLGYDRNQSAFWYFY 156 (297)
Q Consensus 139 R~ePlG~D~~g~~Yw~f~ 156 (297)
+-.-+|.|..||+||-..
T Consensus 9 ~g~lVG~D~~GNkYYE~~ 26 (115)
T PLN03095 9 AGRLVGEDEFGNKYYENP 26 (115)
T ss_pred cceEeEEcCCCCeeeEcC
Confidence 445689999999999864
No 16
>PRK08183 NADH dehydrogenase; Validated
Probab=23.00 E-value=41 Score=28.27 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=15.5
Q ss_pred ccccccccCCCcEEEEEeC
Q psy16433 139 RLQPLGYDRNQSAFWYFYG 157 (297)
Q Consensus 139 R~ePlG~D~~g~~Yw~f~d 157 (297)
+-.-+|.|..||+||-..+
T Consensus 25 ~g~lVG~D~~GNkYYE~~~ 43 (133)
T PRK08183 25 KGERVGEDEFGNVYYRTKG 43 (133)
T ss_pred cCeEeEecCCCCeeeecCC
Confidence 3567999999999997644
No 17
>PF12006 DUF3500: Protein of unknown function (DUF3500); InterPro: IPR021889 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 335 to 438 amino acids in length. This protein has a conserved GHH sequence motif. This protein has two completely conserved G residues that may be functionally important.
Probab=20.93 E-value=2.7e+02 Score=26.64 Aligned_cols=68 Identities=10% Similarity=0.091 Sum_probs=50.3
Q ss_pred CCCCCCCChhhHHHHHHHHHHhhcCc-hh----HHHHhccCCCCccccccccccCCCcEEEE-EeCcEEEEecC
Q psy16433 98 DIDFQFLPLRTKVEILQALCDFRLDA-DD----VLDCLKNLESDSLRLQPLGYDRNQSAFWY-FYGTRLYREDY 165 (297)
Q Consensus 98 ~~~f~~L~~~~Kl~ILk~Lce~~l~~-~~----vr~~ik~~d~~~lR~ePlG~D~~g~~Yw~-f~d~RLYrE~~ 165 (297)
+..+.+|+..+|-.++..+-+|.-.- +. .++.|..-..+..+.-=+|.+..|.-+|| +.|-+++.|-.
T Consensus 215 Gl~~s~Lt~~Qq~ll~~li~~y~~~~~~~~a~~~~~~i~~~~ld~t~faW~G~~~~~~~~YyRI~gP~~lIEfd 288 (313)
T PF12006_consen 215 GLAVSELTADQQELLLALIKEYLGRLPEEDAAERMAEIEEAGLDETYFAWAGGTEPGDPHYYRIQGPVFLIEFD 288 (313)
T ss_pred CcChhhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccceEEEEecCCCCCCCeEEEEECCEEEEEEe
Confidence 57899999999999888888887753 22 23444333667888888898777766555 78888888754
Done!