Query psy16433
Match_columns 297
No_of_seqs 159 out of 297
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 21:11:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y9y_B IOC3, ISWI one complex 98.7 5.9E-09 2E-13 102.6 5.2 146 9-157 56-311 (624)
2 1eci_A Ectatomin; pore-forming 33.5 2.6 9E-05 25.9 -2.4 14 244-257 7-20 (37)
3 1gff_3 Bacteriophage G4 capsid 18.6 63 0.0021 18.3 1.7 15 144-158 9-23 (26)
4 1yzs_A Sulfiredoxin; PARB doma 16.0 22 0.00074 28.3 -0.9 39 120-158 40-83 (121)
5 1xw3_A Sulfiredoxin; retroredu 15.6 27 0.00091 27.2 -0.5 39 120-158 29-72 (110)
6 1e0m_A Wwprototype; SH3 protot 15.0 75 0.0026 19.0 1.6 10 146-155 13-22 (37)
7 1wr3_A Ubiquitin-protein ligas 14.9 75 0.0026 19.0 1.6 11 146-156 14-24 (36)
8 2kyk_A E3 ubiquitin-protein li 14.6 79 0.0027 19.3 1.7 14 142-155 8-25 (39)
9 1wr4_A Ubiquitin-protein ligas 14.1 81 0.0028 18.6 1.6 15 142-156 6-24 (36)
10 2llz_A Uncharacterized protein 12.7 64 0.0022 24.6 0.9 33 50-82 67-99 (100)
No 1
>2y9y_B IOC3, ISWI one complex protein 3; transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_B
Probab=98.74 E-value=5.9e-09 Score=102.57 Aligned_cols=146 Identities=19% Similarity=0.244 Sum_probs=105.7
Q ss_pred cHHHHHHHHHHHHhhc--CCCCCCHHHHHHHhccCCCC-------------C----------------chhhhHHHHHHH
Q psy16433 9 EVPSIAHFCSLFRAAF--NLLDFDIEELEEALLTDGTE-------------D----------------TGSSLLQELIVR 57 (297)
Q Consensus 9 e~a~I~~Fl~~F~~~l--~L~~f~~eeLE~aLl~p~~~-------------d----------------~~~~lL~~l~~~ 57 (297)
.+++|+.|+..|..+| .+..++++|||.+|.-+..+ + .|+..+..|+++
T Consensus 56 DIifImsFinKF~~vf~~~l~nlgpQDfE~GL~L~p~~~~~~~~~~~~g~~~~~~~lY~d~~~~k~~~~~qD~MnlLf~~ 135 (624)
T 2y9y_B 56 DIIKLMAFINKFSSFFHSDLQNLSFQDFEVGLDLYPGDPNGSAAGIVKGPEDTSLLLYPDFMAIKDIVYCQDKMNLLFLS 135 (624)
T ss_dssp HHHHHHHHHHHTTTTSCTTTTTCCHHHHHHHHTCCSSCSSSSCSSEECSSSCCCEECHHHHSCSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhccCcccCcChHhhhccccCCCCccccccccccccccccchhhhcccccccccccchHHHHHHHHH
Confidence 4789999999999997 66899999999999854211 0 145688889999
Q ss_pred HcccccC---------CCCccc---------cccHHHHHHHH---HHhh--hhhcC------------------------
Q psy16433 58 LLCGCYG---------RNHGIS---------IFNYQMFLRRL---FRTK--CREYG------------------------ 90 (297)
Q Consensus 58 LL~~~~~---------~~r~i~---------~~~we~~L~~~---~~~~--~~e~~------------------------ 90 (297)
||..+++ +++.|+ ...|..++.+. ...| ..||.
T Consensus 136 LL~LvLN~~~~~~~~~rkkpv~s~~~l~~~~~k~y~KaI~eLr~~s~~wG~PkEWr~~~~~~~~~~~~~s~~f~~dd~~e 215 (624)
T 2y9y_B 136 LLDLTFTENFDGKSAKKKGPLTTWENLKSSSKKVFSNPLYRLRLVAREWGYPREWRQQLPSDQDISKPKTALFEQDEQTP 215 (624)
T ss_dssp HHHHHTTTCSCCCSSCCCSCCCCHHHHTCSCSHHHHHHHHHHHHHTTTTCCCTTTEECCTTSSCCSSSCCCBSCSSCCCS
T ss_pred HHHHHcCcccccccccccCcccccchhhhhhhhhHHHHHHHHHHhhhccCCChhhhcccccccccccccccccccccccc
Confidence 9988877 444444 23355666543 2233 12221
Q ss_pred -------------------------CCCCCCCC----CCCCCCChhhHHHHHHHHHHhhcCc-hhHHHHhc--cCCCCcc
Q psy16433 91 -------------------------RENPFDSD----IDFQFLPLRTKVEILQALCDFRLDA-DDVLDCLK--NLESDSL 138 (297)
Q Consensus 91 -------------------------~~nPl~~~----~~f~~L~~~~Kl~ILk~Lce~~l~~-~~vr~~ik--~~d~~~l 138 (297)
..|||.+. ..|..|.|.+||.+|++|++|.+.+ +.|...|- .....+
T Consensus 216 ~VDP~~~EILt~~i~~w~~~~~~~~e~NPl~~~ele~~GllgL~P~DRLvLLRtLv~W~LS~S~~Ik~eI~~lsh~k~D- 294 (624)
T 2y9y_B 216 VVDPSHPEILTPNIYTWNANEPLPLESNPLYNREMDKNGILALKPMDRVVLLRALTDWCASHSSAIHDEIYKLTHGKKD- 294 (624)
T ss_dssp CSCTTSCCCSCSCCBCCCCCEECCTTTCGGGCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCSSC-
T ss_pred cCCCCchhhcccccccccccccccccCCCCcCccccccccccCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccC-
Confidence 14888752 6899999999999999999999986 56666654 122111
Q ss_pred ccccccccCCCcEEEEEeC
Q psy16433 139 RLQPLGYDRNQSAFWYFYG 157 (297)
Q Consensus 139 R~ePlG~D~~g~~Yw~f~d 157 (297)
.|+|.|.....||++.|
T Consensus 295 --~p~G~dT~~a~r~lleG 311 (624)
T 2y9y_B 295 --PVFGIQTQQVPRYTIEG 311 (624)
T ss_dssp --CTTCCCSCBCCSHHHHC
T ss_pred --CCCCcccchhhHHHHhC
Confidence 69999999999999887
No 2
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=33.53 E-value=2.6 Score=25.90 Aligned_cols=14 Identities=50% Similarity=1.156 Sum_probs=11.7
Q ss_pred ceEEEecCHHHHHH
Q psy16433 244 TWQVVCYTEEDWTK 257 (297)
Q Consensus 244 ~We~v~~t~ee~~~ 257 (297)
-||+||-|++.|..
T Consensus 7 iweticpt~~~~ak 20 (37)
T 1eci_A 7 IWETVCPTVEPWAK 20 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhCcchHHHHH
Confidence 59999999988853
No 3
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=18.60 E-value=63 Score=18.28 Aligned_cols=15 Identities=33% Similarity=0.720 Sum_probs=12.2
Q ss_pred cccCCCcEEEEEeCc
Q psy16433 144 GYDRNQSAFWYFYGT 158 (297)
Q Consensus 144 G~D~~g~~Yw~f~d~ 158 (297)
|.-+.|.+.||.+|.
T Consensus 9 ~~r~kgarlwyvggt 23 (26)
T 1gff_3 9 GGKSKGARLWYVGGT 23 (26)
T ss_pred CCCCCceEEEEecce
Confidence 456789999999875
No 4
>1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens} SCOP: d.268.1.4 PDB: 2b6f_A*
Probab=15.99 E-value=22 Score=28.25 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=18.8
Q ss_pred hcCchhHHHHhccCCCCccccccccc-----cCCCcEEEEEeCc
Q psy16433 120 RLDADDVLDCLKNLESDSLRLQPLGY-----DRNQSAFWYFYGT 158 (297)
Q Consensus 120 ~l~~~~vr~~ik~~d~~~lR~ePlG~-----D~~g~~Yw~f~d~ 158 (297)
.++...+.+.+.++....+++.||-. ...|+.|++|.|+
T Consensus 40 ~~d~~kv~eL~eSI~~~Gl~~~PI~V~~~~g~~gg~~Y~l~~G~ 83 (121)
T 1yzs_A 40 VLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGC 83 (121)
T ss_dssp CCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCH
T ss_pred cCCHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCceEEEEecc
Confidence 34444444443333323344444432 2246677778883
No 5
>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} SCOP: d.268.1.4 PDB: 1xw4_X* 3cyi_A* 2rii_X 3hy2_X*
Probab=15.57 E-value=27 Score=27.21 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=19.5
Q ss_pred hcCchhHHHHhccCCCCccccccccc-----cCCCcEEEEEeCc
Q psy16433 120 RLDADDVLDCLKNLESDSLRLQPLGY-----DRNQSAFWYFYGT 158 (297)
Q Consensus 120 ~l~~~~vr~~ik~~d~~~lR~ePlG~-----D~~g~~Yw~f~d~ 158 (297)
.||.+.+.+.+..+....++++||-. +..|..|++|.|.
T Consensus 29 ~~d~~kv~eL~~SI~~~Gl~l~PI~Vr~~~g~~~~~~Y~li~G~ 72 (110)
T 1xw3_A 29 VLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGC 72 (110)
T ss_dssp CCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCH
T ss_pred ccCHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcEEEEcch
Confidence 34444444333333223334445422 3356778889984
No 6
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=15.03 E-value=75 Score=18.96 Aligned_cols=10 Identities=20% Similarity=0.600 Sum_probs=7.8
Q ss_pred cCCCcEEEEE
Q psy16433 146 DRNQSAFWYF 155 (297)
Q Consensus 146 D~~g~~Yw~f 155 (297)
|.+|+.|||=
T Consensus 13 ~~~G~~Yy~n 22 (37)
T 1e0m_A 13 THNGKTYYYN 22 (37)
T ss_dssp CSSCCEEEEE
T ss_pred CCCCCEEEEE
Confidence 6788888874
No 7
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=14.85 E-value=75 Score=18.96 Aligned_cols=11 Identities=9% Similarity=0.129 Sum_probs=8.3
Q ss_pred cCCCcEEEEEe
Q psy16433 146 DRNQSAFWYFY 156 (297)
Q Consensus 146 D~~g~~Yw~f~ 156 (297)
|.+|+.||+=.
T Consensus 14 d~~G~~Yy~n~ 24 (36)
T 1wr3_A 14 DNLGRTYYVNH 24 (36)
T ss_dssp CSSSCEEEEET
T ss_pred CCCCCEEEEEC
Confidence 67899988743
No 8
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=14.58 E-value=79 Score=19.29 Aligned_cols=14 Identities=21% Similarity=0.486 Sum_probs=10.4
Q ss_pred cccc----cCCCcEEEEE
Q psy16433 142 PLGY----DRNQSAFWYF 155 (297)
Q Consensus 142 PlG~----D~~g~~Yw~f 155 (297)
|-|| |.+|+.||+=
T Consensus 8 P~gWe~~~d~~G~~YY~n 25 (39)
T 2kyk_A 8 PPGWERRVDNMGRIYYVD 25 (39)
T ss_dssp CSSCEEEECTTSCEEEEC
T ss_pred CCCcEEEEcCCCCEEEEE
Confidence 5565 7789999873
No 9
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=14.06 E-value=81 Score=18.63 Aligned_cols=15 Identities=20% Similarity=0.518 Sum_probs=10.2
Q ss_pred cccc----cCCCcEEEEEe
Q psy16433 142 PLGY----DRNQSAFWYFY 156 (297)
Q Consensus 142 PlG~----D~~g~~Yw~f~ 156 (297)
|-|| |.+|+.||+=.
T Consensus 6 P~gWe~~~d~~g~~Yy~n~ 24 (36)
T 1wr4_A 6 PSGWEERKDAKGRTYYVNH 24 (36)
T ss_dssp CTTEEEEECSSSCEEEEET
T ss_pred CCCCEEEECCCCCEEEEEC
Confidence 4555 67889987643
No 10
>2llz_A Uncharacterized protein YJDK; RNAse, biofilm, unknown function; NMR {Escherichia coli}
Probab=12.74 E-value=64 Score=24.64 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=22.8
Q ss_pred hHHHHHHHHcccccCCCCccccccHHHHHHHHH
Q psy16433 50 LLQELIVRLLCGCYGRNHGISIFNYQMFLRRLF 82 (297)
Q Consensus 50 lL~~l~~~LL~~~~~~~r~i~~~~we~~L~~~~ 82 (297)
-+.+|...|-...++....|+..+|++|+++++
T Consensus 67 ev~~La~~L~e~Alg~~pev~v~T~ee~~kq~~ 99 (100)
T 2llz_A 67 EIEDLIRLKCLDLPDIDFDLNIMTVDDYFRQFY 99 (100)
T ss_dssp HHHHHHHHGGGTSSCCCCEEEEEEHHHHHTTSC
T ss_pred HHHHHHHHHHHhhcCCCCceeEeeHHHHHHHhh
Confidence 444555555555566677899999999998653
Done!