RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16433
(297 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 7e-06
Identities = 42/306 (13%), Positives = 90/306 (29%), Gaps = 107/306 (34%)
Query: 3 DIQSWWEVPSIAHF-CSLFRAAFNLLDFDIEELEEALLTDGT--EDTGSSLLQELIVRLL 59
++ VP+ + F S + F + L E T+G +D ++ EL+ +
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQF------NKILPEP--TEGFAADDEPTTPA-ELVGK-- 63
Query: 60 CGCYGRNHGISIFNYQMFLRRLFRTKCREYGRENPFDSDIDFQFLPLRTKVEILQ-ALCD 118
FL + + E + FD ++L L +
Sbjct: 64 -----------------FLG--YVSSLVEPSKVGQFD--------------QVLNLCLTE 90
Query: 119 FR---LDADDVLDCLKNLESDSLRLQPLGYD--RNQSAFWYFYGTRLYREDYPKVVSQIV 173
F L+ +D+ L ++ + +N Y + + + K + +
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN-----YITARIMAKRPFDKKSNSAL 145
Query: 174 FQSITGPQVGIWTLF---------LKTVHTKKKKKRKLSALWKALKKKKEAPPKRGRKRI 224
F+++ + +F + +L L++ K + +
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFE----------ELRDLYQTYHVLVGDLIKFSAETL 195
Query: 225 RPL--DPSEEEPEFE--LDLGAGTWQVVCYTEEDWTKLAEATADAPCKEEKTLHHVLTED 280
L + E F L++ +W + T D +D
Sbjct: 196 SELIRTTLDAEKVFTQGLNI------------LEWLENPSNTPD--------------KD 229
Query: 281 FLPEIP 286
+L IP
Sbjct: 230 YLLSIP 235
Score = 46.6 bits (110), Expect = 7e-06
Identities = 70/382 (18%), Positives = 104/382 (27%), Gaps = 160/382 (41%)
Query: 2 LDIQSWWE----VPSIAHFCSL--------------FRAAFNLLDFDIEELEEALLTDGT 43
L+I W E P + S+ + LL F EL L G
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL--KGA 270
Query: 44 EDTGSSLLQELIVRLLCGCYGRNHGISI------F--NYQMFLRRLFRTKCREYGRENPF 95
TG S Q L+ + I+ F + + + LF
Sbjct: 271 --TGHS--QGLVTAVA---------IAETDSWESFFVSVRKAITVLF------------- 304
Query: 96 DSDIDFQFLPLRTKVEILQALCDFRLDADDVLDCLKNLESD-----SLRLQPLGYDRNQS 150
F+ +R +A + L + D L+N E S+ + Q
Sbjct: 305 -------FIGVRCY----EAYPNTSLPPSILEDSLENNEGVPSPMLSIS----NLTQEQ- 348
Query: 151 AFWYFYGTRLYREDYPKV-VS------QIVFQSITGPQVGIWTLFLKTVHTKKKKKRKLS 203
Y T + +V +S +V ++GP + L
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLV---VSGPP------------------QSLY 387
Query: 204 ALWKALKKKKEAPPKRGRKRIRPLDPSEEEPEF-----------------------ELDL 240
L L+K K AP + RI P SE + +F DL
Sbjct: 388 GLNLTLRKAK-APSGLDQSRI-PF--SERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 241 GAGTWQ---------VVC-YTEEDW----TKLAEATADA----PCKEEKTLH----HVLT 278
V + D ++E D P K E T H+L
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL- 502
Query: 279 EDFLP----EIPRLFEEKRNLQ 296
DF P + L RN
Sbjct: 503 -DFGPGGASGLGVLT--HRNKD 521
Score = 30.4 bits (68), Expect = 0.83
Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 53/131 (40%)
Query: 123 ADDVLDCLKNLESDSLRLQPLGYD-----RNQ--SAFWYFYGT--RLYREDYP------- 166
A DV + +D+ G+ N + +F G + RE+Y
Sbjct: 1642 AQDVWN-----RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 167 ---KVVSQIVFQSIT---------GPQVGIWTLFLKTVHT--------KKKKKRKLSALW 206
K+ ++ +F+ I + L T T K A +
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKG---LLSA-TQFTQPALTLMEK--------AAF 1744
Query: 207 KALKKKKEAPP 217
+ LK K P
Sbjct: 1745 EDLKSKGLIPA 1755
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 6e-04
Identities = 38/235 (16%), Positives = 76/235 (32%), Gaps = 53/235 (22%)
Query: 92 ENPFDSDIDFQFLPLRTKVEILQALCDFRLDADDVLDCLKNLESDSLRLQPLGYDRNQSA 151
E+ F + D + + K IL + + D ++ K+ S +LRL + +
Sbjct: 26 EDAFVDNFDCKDVQDMPK-SILS-----KEEIDHIIM-SKDAVSGTLRLFWTLLSKQEEM 78
Query: 152 FWYFYGTRLYREDYPKVVSQIVFQSITGPQVGIWTLFLKTVHTKKKKKRKLSALWKALKK 211
F L R +Y ++S I + P + ++++ L+
Sbjct: 79 VQKFVEEVL-RINYKFLMSPIKTEQR-QPS-MMTRMYIEQR----------DRLYND--- 122
Query: 212 KKEAPPKRGRKRIRPLDP-----SEEEPEFELDL----GAG-TWQV--VCYTEED----- 254
+ K R++P E P + + G+G TW VC + +
Sbjct: 123 -NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 255 ----WTKLAEA-TADAPCKEEKTLHHVLT------EDFLPEIPRLFEE-KRNLQR 297
W L + + + + L + + D I + L+R
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Score = 39.8 bits (92), Expect = 9e-04
Identities = 35/209 (16%), Positives = 59/209 (28%), Gaps = 55/209 (26%)
Query: 18 SLFRAAFNLL-----DFDI-EELEEALLTDGTEDTGSSLLQELIVRLLCGCYGRNHGISI 71
+ +R F+ L I L + D + ++ +L L + ISI
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 72 FNYQMFLRR-------LFRTKCREYGRENPFDSD-------------------------- 98
+ + L+ L R+ Y FDSD
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 99 ---------IDFQFLPLRTKVEILQALCDFRLDADDVLDCLKNLESDSLRLQPLGYDRNQ 149
+DF+F L K+ + + L LK + P Y+R
Sbjct: 489 RMTLFRMVFLDFRF--LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK-YERLV 545
Query: 150 SAFWYF---YGTRLYREDYPKVVSQIVFQ 175
+A F L Y ++ +I
Sbjct: 546 NAILDFLPKIEENLICSKYTDLL-RIALM 573
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.3
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 8/23 (34%)
Query: 130 LKNLESDSLRL-QPLGYDRNQSA 151
LK L++ SL+L D SA
Sbjct: 22 LKKLQA-SLKLYAD---D---SA 37
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 29.0 bits (65), Expect = 1.9
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 6/41 (14%)
Query: 21 RAAFNLLDFD------IEELEEALLTDGTEDTGSSLLQELI 55
R + DFD EE+++ L ++ +
Sbjct: 256 RILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQF 296
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 28.3 bits (64), Expect = 3.1
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 230 SEEEPEFELDLGAGTWQVVCYTEEDW-TKLAEAT 262
+ + E L LGA V+ + + E T
Sbjct: 178 NNKHTEELLRLGA--AYVIDTSTAPLYETVMELT 209
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 27.6 bits (61), Expect = 5.1
Identities = 6/41 (14%), Positives = 10/41 (24%), Gaps = 6/41 (14%)
Query: 21 RAAFNLLDFD------IEELEEALLTDGTEDTGSSLLQELI 55
F+ +D EE + A+ L
Sbjct: 133 TVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALF 173
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 27.5 bits (60), Expect = 5.4
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 189 LKTVHTKKKKKRKLSALWKALKKKKEAPPKRGRKRIR 225
+ V KKKR+ A K + +K+ K RK R
Sbjct: 33 VPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARR 69
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase,
structural genomics, structural GEN consortium, SGC,
transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F*
1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A*
1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F*
2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Length = 374
Score = 27.5 bits (61), Expect = 5.9
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 86 CREYGRENPFDSDIDFQFLPLRTKVEILQALCDFRLDADDVLDCLKNLESDSLRLQP 142
RE D+D + + VE+LQA F L ADD++D S + R Q
Sbjct: 89 FRELVEPRKQDADSLQRAWTVGWCVELLQA---FFLVADDIMD-----SSLTRRGQI 137
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 27.6 bits (61), Expect = 6.1
Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 15/88 (17%)
Query: 195 KKKKKRKLSALWKALKKKKEAPPKRGRKRIRPLDPSEEEPEFELDLGAGTWQVVCYTEED 254
K+K K K + PP I L P+ P+ G T++
Sbjct: 94 GATGKKKKKKKKKRGPKVQTDPP---SVPICDLYPNGVFPK-------GQECEYPPTQDG 143
Query: 255 WTKLAEATADAPCKEEKTLHHVLTEDFL 282
T T+ EEK +E+
Sbjct: 144 RTAAWRTTS-----EEKKALDQASEEIW 166
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 27.4 bits (61), Expect = 6.2
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 117 CDFRLDADDVLDCLKNLESDSL-----RLQPLGYDRNQSAFWYF 155
CD A+D L+CL++ S L F F
Sbjct: 276 CDTSASANDTLECLRSKSSSVLHDAQNSYDLKDLFGLLPQFLGF 319
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 27.3 bits (61), Expect = 6.3
Identities = 6/39 (15%), Positives = 8/39 (20%), Gaps = 6/39 (15%)
Query: 21 RAAFNLLDFD------IEELEEALLTDGTEDTGSSLLQE 53
L D + + L G T S
Sbjct: 385 LNPHIHLMGDESACIAYIRITQYLDAGGIPRTAQSEETR 423
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.434
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,816,623
Number of extensions: 286432
Number of successful extensions: 786
Number of sequences better than 10.0: 1
Number of HSP's gapped: 778
Number of HSP's successfully gapped: 26
Length of query: 297
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 204
Effective length of database: 4,105,140
Effective search space: 837448560
Effective search space used: 837448560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)