RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16433
         (297 letters)



>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
          fragment {Escherichia coli, gene dnaK [TaxId: 562]}
          Length = 198

 Score = 29.9 bits (67), Expect = 0.28
 Identities = 11/49 (22%), Positives = 21/49 (42%)

Query: 36 EALLTDGTEDTGSSLLQELIVRLLCGCYGRNHGISIFNYQMFLRRLFRT 84
          E L T+G    G       ++  L   + ++ GI + N  + ++RL   
Sbjct: 32 EVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEA 80


>d2gpia1 d.354.1.1 (A:1-90) Hypothetical protein Shew3726
          {Shewanella loihica [TaxId: 359303]}
          Length = 90

 Score = 28.2 bits (63), Expect = 0.35
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 22 AAFNLLDFDIEELEEALLTDGTED 45
          + F    FDIEE  E L+     D
Sbjct: 56 SLFEQFRFDIEEQAEKLIEQEAFD 79


>d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase)
           {Escherichia coli [TaxId: 562]}
          Length = 358

 Score = 27.0 bits (59), Expect = 2.6
 Identities = 4/31 (12%), Positives = 9/31 (29%)

Query: 64  GRNHGISIFNYQMFLRRLFRTKCREYGRENP 94
             ++G+   N     +         Y + N 
Sbjct: 277 SVSYGVVKMNIDTDTQWATWEGVLNYYKANE 307


>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase
           {Escherichia coli [TaxId: 562]}
          Length = 284

 Score = 26.9 bits (59), Expect = 3.3
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 62  CYGRNHGISIFNYQMFLRRLFRTKCREYGRENPFDSD 98
                 G++  N    L+  F    + +  ENP  +D
Sbjct: 218 RRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGND 254


>d2uubt1 a.7.6.1 (T:8-106) Ribosomal protein S20 {Thermus
           thermophilus [TaxId: 274]}
          Length = 99

 Score = 25.4 bits (56), Expect = 3.4
 Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 3/34 (8%)

Query: 190 KTVHTKKK---KKRKLSALWKALKKKKEAPPKRG 220
            +   K     +K +L    + L +   AP   G
Sbjct: 62  GSTLHKNAAARRKSRLMRKVRQLLEAAGAPLIGG 95


>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase)
           {Thermus aquaticus [TaxId: 271]}
          Length = 305

 Score = 26.2 bits (57), Expect = 4.5
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 65  RNHGISIFNYQMFLRRLFRTKCREYGRENPFDSD 98
            + GI+  N    LR  F    RE   +NP + D
Sbjct: 243 ISLGIAKINTDTDLRLAFTALIREALNKNPKEFD 276


>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
           fragment {Cow (Bos taurus) [TaxId: 9913]}
          Length = 193

 Score = 26.1 bits (57), Expect = 4.9
 Identities = 22/115 (19%), Positives = 32/115 (27%), Gaps = 25/115 (21%)

Query: 36  EALLTDGTEDTGSSLLQELIVRLLCGCYGRNHGISIFNYQMFLRRLFRTKCREYGRENPF 95
           E   T G    G       +V      + R H   I   +  +RRL RT C    R    
Sbjct: 30  EVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRL-RTACERAKRTLSS 88

Query: 96  DSDIDFQF------------------------LPLRTKVEILQALCDFRLDADDV 126
            +    +                         L   T   + +AL D +LD   +
Sbjct: 89  STQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQI 143


>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 332

 Score = 26.1 bits (57), Expect = 5.3
 Identities = 7/42 (16%), Positives = 16/42 (38%)

Query: 183 GIWTLFLKTVHTKKKKKRKLSALWKALKKKKEAPPKRGRKRI 224
                F        K+ +K     + +++ K A  K  ++R+
Sbjct: 291 MDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERL 332


>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 139

 Score = 25.3 bits (54), Expect = 6.9
 Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 7/89 (7%)

Query: 20  FRAAFNLLDFD------IEELEEALLTDGTEDTGSSLLQEL-IVRLLCGCYGRNHGISIF 72
           F+ AF L D          +  + +   G   T + +L+ L   +       R    +  
Sbjct: 2   FKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFL 61

Query: 73  NYQMFLRRLFRTKCREYGRENPFDSDIDF 101
                + +       E   E     D + 
Sbjct: 62  PMLQAVAKNRGQGTYEDYLEGFRVFDKEG 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.434 

Gapped
Lambda     K      H
   0.267   0.0694    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,205,887
Number of extensions: 58265
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 10
Length of query: 297
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,240,546
Effective search space: 262995752
Effective search space used: 262995752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)