BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16434
(745 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 278 bits (712), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 150/280 (53%), Positives = 190/280 (67%), Gaps = 45/280 (16%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
KHFSGLEEAVYRNI ACK+ A T RTAYGPNGMNK+VINH++KLFVTNDAATI+RELE++
Sbjct: 4 KHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQ 63
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPAAK+I++ S MQE+
Sbjct: 64 --------------------------------------------HPAAKMIVMASHMQEQ 79
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
E+GDGTNFV++FAGALL A+ LLR+GL+ SE++ GY++A K EILP L C K++R
Sbjct: 80 EVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLR 139
Query: 360 NVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN 419
+V+ V+ + +++MSKQYGNE FL LI +ACVSI PD S FNVDN+R+ KILGSG+ +
Sbjct: 140 DVDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFPD-SGHFNVDNIRVCKILGSGVHS 198
Query: 420 SEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
S ++ GMVFK+ EGD+T AKIAVY+CP D TETK
Sbjct: 199 SSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETK 238
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 87/111 (78%)
Query: 605 AKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAK 664
AKIAVY+CP D TETKGTVLIKSA+ELM FS+GEEN ++ Q+KAIADTGANVVV G +
Sbjct: 221 AKIAVYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGR 280
Query: 665 FGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFC 715
DMALHY NKY +M VRLNSK+DLRRLCK V ATALPRL ++ C
Sbjct: 281 VADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHC 331
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/183 (45%), Positives = 105/183 (57%), Gaps = 42/183 (22%)
Query: 461 PPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVN 520
PP E+G+ DSV + E+GDT VVVFK E + I+T+V+RG+T+N MDDIERAVDDGVN
Sbjct: 322 PPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVN 381
Query: 521 TFKGITK------------------------------------------VFVKTLAENTG 538
TFK +T+ + LAEN+G
Sbjct: 382 TFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSG 441
Query: 539 VKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANT 598
VK+NEVISKLY+ H EG K G DI E +V D EAG+LD YL K WA+K AT+AA T
Sbjct: 442 VKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVT 501
Query: 599 ILQ 601
+L+
Sbjct: 502 VLR 504
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 188 bits (478), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 164/296 (55%), Gaps = 52/296 (17%)
Query: 172 AAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAAT 231
A +F+ +S + + ++I+A ++ T+ GP G NKI++NH+ K+ +TNDAAT
Sbjct: 11 AGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAAT 70
Query: 232 IIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLII 291
++REL+I HPA K+++
Sbjct: 71 MLRELDIV--------------------------------------------HPAVKVLV 86
Query: 292 LGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLT 351
+ ++ Q+ +MGDGTN V+I AG LL ++ L+ MGL+ EI+ GY +A TL+ L +
Sbjct: 87 MATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMV 146
Query: 352 CFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSS-----FNVDN 406
E+ D + + K IK I SK+YG+ED L++L+++A +LP + FNVD+
Sbjct: 147 VGEITDKNDKNELLKMIKPVISSKKYGSEDILSELVSEAVSHVLPVAQQAGEIPYFNVDS 206
Query: 407 VRITKILGSGLFNSEIVQGMVFKRSVEGDI---TKQTKAKIAVYTCPVDIATTETK 459
+R+ KI+G L NS +++GMVF R EG + ++ K K+AV+TCP+DIA TETK
Sbjct: 207 IRVVKIMGGSLSNSTVIKGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIANTETK 262
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 83/107 (77%)
Query: 598 TILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGAN 657
++ + K K+AV+TCP+DIA TETKGTVL+ +A E++ FS+GEE Q++ +K IAD G
Sbjct: 238 SLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVE 297
Query: 658 VVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
+VAGA G++ALHYLN+YG++ +++ SKF+LRRLC+ AT LPRL
Sbjct: 298 CIVAGAGVGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRL 344
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 91/193 (47%), Gaps = 54/193 (27%)
Query: 462 PAASELGYADSVAVDELGDTAVVVFKLEAAE-SRIATLVIRGATENYMDDIERAVDDGVN 520
P ELG ++V E+G V VFK E E SR +T+++RGAT+N +DDIERA+DDGV
Sbjct: 347 PTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVA 406
Query: 521 TFKGITK--------------------------------------------VFVKTLAEN 536
KG+ K V +TLAE
Sbjct: 407 AVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAET 466
Query: 537 TGVKSNEVISKLYSAHNEGK----KT----YGFDINGE-NSSVIDAAEAGILDLYLTKMW 587
G+ NEV+ LY+AHN + KT G DI+GE + V D E I D+ TK +
Sbjct: 467 AGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKF 526
Query: 588 ALKYATSAANTIL 600
A+ AT AA T+L
Sbjct: 527 AINVATEAATTVL 539
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 149/298 (50%), Gaps = 56/298 (18%)
Query: 164 SPRRTTLPAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKL 223
S + LP + +Y + +A NI A + A+TVR+ GP GM+K++++ + +
Sbjct: 2 SQQPGVLPENMKRYMGR------DAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDV 55
Query: 224 FVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIE 283
VTND TI+RE+ +E
Sbjct: 56 VVTNDGVTILREMSVE-------------------------------------------- 71
Query: 284 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKT 343
HPAAK++I ++ QE+E+GDGT ++ AG LL A+ LL + P+ +V GY+ A K
Sbjct: 72 HPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKA 131
Query: 344 LEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSF 402
E+L T+ C EV ++ E +TK ++I K ++ L ++I +A VS + D
Sbjct: 132 QELLKTIAC-EV-GAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEA-VSAVVDDEGKV 188
Query: 403 NVDNVRITKILGSGLFNSEIVQG-MVFKRSVEGDITKQ-TKAKIAVYTCPVDIATTET 458
+ D ++I K G+ + ++E+++G +V K V + K+ T AKIA+ C ++I TET
Sbjct: 189 DKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETET 246
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 62/126 (49%)
Query: 576 AGILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMK 635
A I D L K + +A + T AKIA+ C ++I TET + I +LM+
Sbjct: 201 ASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLME 260
Query: 636 FSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKA 695
F EE L++ + I +GANV+ D+A HYL K G++ R K D+ +L KA
Sbjct: 261 FIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKA 320
Query: 696 VNATAL 701
A +
Sbjct: 321 TGANVI 326
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 48/183 (26%)
Query: 463 AASELGYADSVAVDEL-GDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNT 521
+A +LG A V ++ GD+ ++F E + T++IRG TE+ ++++ RAVDD V
Sbjct: 333 SAQDLGDAGLVEERKISGDS--MIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGV 390
Query: 522 F----------------------------KGIT--------------KVFVKTLAENTGV 539
+GI+ +V +TLAEN G+
Sbjct: 391 VGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGL 450
Query: 540 KSNEVISKLYSAH-NEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANT 598
+ E++ K+ +AH + G K G ++ +V D E G+++ K A++ A +
Sbjct: 451 DAIEILVKVRAAHASNGNKCAGLNVF--TGAVEDMCENGVVEPLRVKTQAIQSAAESTEM 508
Query: 599 ILQ 601
+L+
Sbjct: 509 LLR 511
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 149/298 (50%), Gaps = 56/298 (18%)
Query: 164 SPRRTTLPAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKL 223
S + LP + +Y + +A NI A + A+TVR+ GP GM+K++++ + +
Sbjct: 2 SQQPGVLPENMKRYMGR------DAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDV 55
Query: 224 FVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIE 283
VTND TI+RE+ +E
Sbjct: 56 VVTNDGVTILREMSVE-------------------------------------------- 71
Query: 284 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKT 343
HPAAK++I ++ QE+E+GDGT ++ AG LL A+ LL + P+ +V GY+ A K
Sbjct: 72 HPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKA 131
Query: 344 LEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSF 402
E+L T+ C EV ++ E +TK ++I K ++ L ++I +A VS + D
Sbjct: 132 QELLKTIAC-EV-GAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEA-VSAVVDDEGKV 188
Query: 403 NVDNVRITKILGSGLFNSEIVQG-MVFKRSVEGDITKQ-TKAKIAVYTCPVDIATTET 458
+ D ++I K G+ + ++E+++G +V K V + K+ T AKIA+ C ++I TET
Sbjct: 189 DKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETET 246
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 64/131 (48%)
Query: 576 AGILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMK 635
A I D L K + +A + T AKIA+ C ++I TET + I +LM+
Sbjct: 201 ASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLME 260
Query: 636 FSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKA 695
F EE L++ + I +GANV+ D+A HYL K G++ R K D+ +L KA
Sbjct: 261 FIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKA 320
Query: 696 VNATALPRLVS 706
A + + +
Sbjct: 321 TGANVIAAIAA 331
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 55/183 (30%)
Query: 472 SVAVDELGDTAVV----------VFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNT 521
+++ +LGD +V +F E + T++IRG TE+ ++++ RAVDD V
Sbjct: 331 ALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGV 390
Query: 522 F----------------------------KGIT--------------KVFVKTLAENTGV 539
+GI+ +V +TLAEN G+
Sbjct: 391 VGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGL 450
Query: 540 KSNEVISKLYSAH-NEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANT 598
+ E++ K+ +AH + G K G ++ +V D E G+++ K A++ A +
Sbjct: 451 DAIEILVKVRAAHASNGNKCAGLNVF--TGAVEDMCENGVVEPLRVKTQAIQSAAESTEM 508
Query: 599 ILQ 601
+L+
Sbjct: 509 LLR 511
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 144/282 (51%), Gaps = 51/282 (18%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
K + G +A NI A + A+TVR+ GP GM+K++++ + + VTND TI+RE+ +E
Sbjct: 7 KRYMG-RDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVE 65
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPAAK++I ++ QE+
Sbjct: 66 --------------------------------------------HPAAKMLIEVAKTQEK 81
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
E+GDGT ++ AG LL A+ LL + P+ +V GY+ A K E+L T+ C EV +
Sbjct: 82 EVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIAC-EV-GAQ 139
Query: 360 NVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLF 418
+ E +TK ++I K ++ L ++I +A VS + D + D ++I K G+ +
Sbjct: 140 DKEILTKIAMTSITGKGAEKAKEKLAEIIVEA-VSAVVDDEGKVDKDLIKIEKKSGASID 198
Query: 419 NSEIVQG-MVFKRSVEGDITKQ-TKAKIAVYTCPVDIATTET 458
++E+++G +V K V + K+ T AKIA+ C ++I TET
Sbjct: 199 DTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETET 240
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 64/131 (48%)
Query: 576 AGILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMK 635
A I D L K + +A + T AKIA+ C ++I TET + I +LM+
Sbjct: 195 ASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLME 254
Query: 636 FSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKA 695
F EE L++ + I +GANV+ D+A HYL K G++ R K D+ +L KA
Sbjct: 255 FIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKA 314
Query: 696 VNATALPRLVS 706
A + + +
Sbjct: 315 TGANVIAAIAA 325
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 55/183 (30%)
Query: 472 SVAVDELGDTAVV----------VFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNT 521
+++ +LGD +V +F E + T++IRG TE+ ++++ RAVDD V
Sbjct: 325 ALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGV 384
Query: 522 F----------------------------KGIT--------------KVFVKTLAENTGV 539
+GI+ +V +TLAEN G+
Sbjct: 385 VGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGL 444
Query: 540 KSNEVISKLYSAH-NEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANT 598
+ E++ K+ +AH + G K G ++ +V D E G+++ K A++ A +
Sbjct: 445 DAIEILVKVRAAHASNGNKCAGLNVF--TGAVEDMCENGVVEPLRVKTQAIQSAAESTEM 502
Query: 599 ILQ 601
+L+
Sbjct: 503 LLR 505
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 144/282 (51%), Gaps = 51/282 (18%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
K + G +A NI A + A+TVR+ GP GM+K++++ + + VTND TI+RE+ +E
Sbjct: 7 KRYMG-RDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVE 65
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPAAK++I ++ QE+
Sbjct: 66 --------------------------------------------HPAAKMLIEVAKTQEK 81
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
E+GDGT ++ AG LL A+ LL + P+ +V GY+ A K E+L T+ C EV +
Sbjct: 82 EVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIAC-EV-GAQ 139
Query: 360 NVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLF 418
+ E +TK ++I K ++ L ++I +A VS + D + D ++I K G+ +
Sbjct: 140 DKEILTKIAMTSITGKGAEKAKEKLAEIIVEA-VSAVVDDEGKVDKDLIKIEKKSGASID 198
Query: 419 NSEIVQG-MVFKRSVEGDITKQ-TKAKIAVYTCPVDIATTET 458
++E+++G +V K V + K+ T AKIA+ C ++I TET
Sbjct: 199 DTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETET 240
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 62/126 (49%)
Query: 576 AGILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMK 635
A I D L K + +A + T AKIA+ C ++I TET + I +LM+
Sbjct: 195 ASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLME 254
Query: 636 FSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKA 695
F EE L++ + I +GANV+ D+A HYL K G++ R K D+ +L KA
Sbjct: 255 FIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKA 314
Query: 696 VNATAL 701
A +
Sbjct: 315 TGANVI 320
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 48/183 (26%)
Query: 463 AASELGYADSVAVDEL-GDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNT 521
+A +LG A V ++ GD+ ++F E + T++IRG TE+ ++++ RAVDD V
Sbjct: 327 SAQDLGDAGLVEERKISGDS--MIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGV 384
Query: 522 F----------------------------KGIT--------------KVFVKTLAENTGV 539
+GI+ +V +TLAEN G+
Sbjct: 385 VGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGL 444
Query: 540 KSNEVISKLYSAH-NEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANT 598
+ E++ K+ +AH + G K G ++ +V D E G+++ K A++ A +
Sbjct: 445 DAIEILVKVRAAHASNGNKCAGLNVF--TGAVEDMCENGVVEPLRVKTQAIQSAAESTEM 502
Query: 599 ILQ 601
+L+
Sbjct: 503 LLR 505
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 146/297 (49%), Gaps = 56/297 (18%)
Query: 164 SPRRTTLPAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKL 223
S + LP + +Y + +A NI A + A+TVR+ GP GM+K++++ + +
Sbjct: 2 SQQPGVLPENMKRYMGR------DAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDV 55
Query: 224 FVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIE 283
VTND TI+RE+ +EHPAAK++I ++ QE+E+GDGT ++ AG LL A+ LL
Sbjct: 56 VVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNV 115
Query: 284 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKT 343
HP +V GY+ A K
Sbjct: 116 HPTI--------------------------------------------VVKGYQAAAQKA 131
Query: 344 LEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSF 402
E+L T+ C EV ++ E +TK ++I K ++ L ++I +A VS + D
Sbjct: 132 QELLKTIAC-EV-GAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEA-VSAVVDDEGKV 188
Query: 403 NVDNVRITKILGSGLFNSEIVQG-MVFKRSVEGDITKQ-TKAKIAVYTCPVDIATTE 457
+ D ++I K G+ + ++E+++G +V K V + K+ T AKIA+ C ++ +E
Sbjct: 189 DKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEETASE 245
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 22/126 (17%)
Query: 576 AGILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMK 635
A I D L K + +A + T AKIA+ C ++ ++A E++K
Sbjct: 201 ASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIE------------ETASEMLK 248
Query: 636 FSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKA 695
+ + I +GANV+ D+A HYL K G++ R K D+ +L KA
Sbjct: 249 ----------DMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKA 298
Query: 696 VNATAL 701
A +
Sbjct: 299 TGANVI 304
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 141/281 (50%), Gaps = 51/281 (18%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
K + G +A NI A + A+TVR+ GP GM+K++++ + + VTND TI+RE+ +E
Sbjct: 7 KRYMG-RDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVE 65
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPAAK++I ++ QE+E+GDGT ++ AG LL A+ LL HP
Sbjct: 66 HPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTI------------ 113
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
+V GY+ A K E+L T+ C EV +
Sbjct: 114 --------------------------------VVKGYQAAAQKAQELLKTIAC-EV-GAQ 139
Query: 360 NVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLF 418
+ E +TK ++I K ++ L ++I +A VS + D + D ++I K G+ +
Sbjct: 140 DKEILTKIAMTSITGKGAEKAKEKLAEIIVEA-VSAVVDDEGKVDKDLIKIEKKSGASID 198
Query: 419 NSEIVQG-MVFKRSVEGDITKQ-TKAKIAVYTCPVDIATTE 457
++E+++G +V K V + K+ T AKIA+ C ++ +E
Sbjct: 199 DTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEETASE 239
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
T AKIA+ C ++ ++A E++K + + I +GANV+
Sbjct: 222 TDAKIALLNCAIE------------ETASEMLK----------DMVAEIKASGANVLFCQ 259
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVS 706
D+A HYL K G++ R K D+ +L KA A + + +
Sbjct: 260 KGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAA 303
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 144/291 (49%), Gaps = 56/291 (19%)
Query: 170 LPAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDA 229
LP + +Y + +A NI A + A+TVR+ GP GM+K++++ + + VTND
Sbjct: 2 LPENMKRYMGR------DAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDG 55
Query: 230 ATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKL 289
TI+RE+ +EHPAAK++I ++ QE+E+GDGT ++ AG LL A+ LL HP
Sbjct: 56 VTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTI-- 113
Query: 290 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPT 349
+V GY+ A K E+L T
Sbjct: 114 ------------------------------------------VVKGYQAAAQKAQELLKT 131
Query: 350 LTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVR 408
+ C EV ++ E +TK ++I K ++ L ++I +A VS + D + D ++
Sbjct: 132 IAC-EV-GAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEA-VSAVVDDEGKVDKDLIK 188
Query: 409 ITKILGSGLFNSEIVQG-MVFKRSVEGDITKQ-TKAKIAVYTCPVDIATTE 457
I K G+ + ++E+++G +V K V + K+ T AKIA+ C ++ +E
Sbjct: 189 IEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEETASE 239
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 22/129 (17%)
Query: 576 AGILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMK 635
A I D L K + +A + T AKIA+ C ++ ++A E++K
Sbjct: 195 ASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIE------------ETASEMLK 242
Query: 636 FSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKA 695
+ + I +GANV+ D+A HYL K G++ R K D+ +L KA
Sbjct: 243 ----------DMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKA 292
Query: 696 VNATALPRL 704
A + +
Sbjct: 293 TGANVITNI 301
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 144/291 (49%), Gaps = 56/291 (19%)
Query: 170 LPAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDA 229
LP + +Y + +A NI A + A+TVR+ GP GM+K++++ + + VTND
Sbjct: 2 LPENMKRYMGR------DAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDG 55
Query: 230 ATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKL 289
TI+RE+ +EHPAAK++I ++ QE+E+GDGT ++ AG LL A+ LL HP
Sbjct: 56 VTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTI-- 113
Query: 290 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPT 349
+V GY+ A K E+L T
Sbjct: 114 ------------------------------------------VVKGYQAAAQKAQELLKT 131
Query: 350 LTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVR 408
+ C EV ++ E +TK ++I K ++ L ++I +A VS + D + D ++
Sbjct: 132 IAC-EV-GAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEA-VSAVVDDEGKVDKDLIK 188
Query: 409 ITKILGSGLFNSEIVQG-MVFKRSVEGDITKQ-TKAKIAVYTCPVDIATTE 457
I K G+ + ++E+++G +V K V + K+ T AKIA+ C ++ +E
Sbjct: 189 IEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEETASE 239
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 22/129 (17%)
Query: 576 AGILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMK 635
A I D L K + +A + T AKIA+ C ++ ++A E++K
Sbjct: 195 ASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIE------------ETASEMLK 242
Query: 636 FSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKA 695
+ + I +GANV+ D+A HYL K G++ R K D+ +L KA
Sbjct: 243 ----------DMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKA 292
Query: 696 VNATALPRL 704
A + +
Sbjct: 293 TGANVITNI 301
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 132/277 (47%), Gaps = 57/277 (20%)
Query: 188 AVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLII 247
A NI A K AD VRT GP GM+K++++ I + ++ND ATI++E+++E
Sbjct: 23 AQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVE-------- 74
Query: 248 LGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNF 307
HP AK+I+ S+ Q+ +GDGT
Sbjct: 75 ------------------------------------HPTAKMIVEVSKAQDTAVGDGTTT 98
Query: 308 VIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKG 367
++ +G LL A+ LL G+ P+ I NGY+LA+ + +I+ + D + K
Sbjct: 99 AVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSTDDA----TLRKI 154
Query: 368 IKSAIMSKQYG-NEDFLTDLITKA--CVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQ 424
+A+ K G + DFL DL+ KA V+ + DG + + N+++ K G + +++ +
Sbjct: 155 ALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFIS 214
Query: 425 GMVFKR----SVEGDITKQTKAKIAVYTCPVDIATTE 457
G+V + S D+ K AKIA+ ++I TE
Sbjct: 215 GIVIDKEKVHSKMPDVVKN--AKIALIDSALEIKKTE 249
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%)
Query: 605 AKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAK 664
AKIA+ ++I TE + V I ++ F E N ++ ++ I +GANVV+
Sbjct: 234 AKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKG 293
Query: 665 FGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNA 698
D+A HYL K G+ VR K D+ +L KA A
Sbjct: 294 IDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGA 327
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 45/179 (25%)
Query: 465 SELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV----- 519
S LG A++V ++GD + F + + +++IRG T++ + ++ERA++D +
Sbjct: 339 SVLGEAETVEERKIGDDRMT-FVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAI 397
Query: 520 -------------------------------------NTFKGITKVFVKTLAENTGVKSN 542
F ++ +TLAEN G+
Sbjct: 398 TKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPI 457
Query: 543 EVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601
+ KL + +G+ + G D++ N+ V D G++D K AL+ A A IL+
Sbjct: 458 NTLIKLKADDEKGRISVGVDLD--NNGVGDMKAKGVVDPLRVKTHALESAVEVATMILR 514
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 105 bits (263), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 139/293 (47%), Gaps = 52/293 (17%)
Query: 171 PAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAA 230
P I + + G +A NI A + A+TVRT GP GM+K++++ + + VTND A
Sbjct: 8 PVVILPEGTQRYVG-RDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCA 66
Query: 231 TIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLI 290
TI+ +++++HPAAK+++ ++ Q++E GDGT ++ AG LL A+ LL HP
Sbjct: 67 TILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHP----- 121
Query: 291 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTL 350
S I+ GY LA K EIL +
Sbjct: 122 ---------------------------------------SIIIKGYALAAEKAQEILDEI 142
Query: 351 TCFEVKDVRNVENVTKGIKSAIMSKQY-GNEDFLTDLITKAC--VSILPDGSSSFNVDNV 407
D + E + K ++I K +++ L L +A V+ DG ++DN+
Sbjct: 143 AIR--VDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNI 200
Query: 408 RITKILGSGLFNSEIVQGMVF-KRSVEGDITKQTK-AKIAVYTCPVDIATTET 458
+ K G G+ SE+V+G+V K V + K+ + AKIA+ +++ TET
Sbjct: 201 KFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTET 253
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 54/94 (57%)
Query: 605 AKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAK 664
AKIA+ +++ TET + I S D+LM F EE L++ + IA TGANVV
Sbjct: 237 AKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKG 296
Query: 665 FGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNA 698
D+A HYL KYG+M VR K D+ +L KA A
Sbjct: 297 IDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGA 330
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 89/219 (40%), Gaps = 55/219 (25%)
Query: 426 MVFKRSVEGDITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVV 485
M +R + D+ K KA A V T E +LGYA+ V +L ++
Sbjct: 311 MAVRRVKKSDMEKLAKATGAKIVTNVKDLTPE--------DLGYAEVVEERKLAGENMI- 361
Query: 486 FKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGIT------------------- 526
F + T++IRG TE+ +D++ERA++D V K +
Sbjct: 362 FVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIR 421
Query: 527 -----------------------KVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDI 563
K+ KTLAEN G+ + E++ K+ S H G D+
Sbjct: 422 LDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDV 481
Query: 564 -NGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601
G+ + D E GI++ K A+K A+ AA IL+
Sbjct: 482 FEGKPA---DMLEKGIIEPLRVKKQAIKSASEAAIMILR 517
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 138/293 (47%), Gaps = 52/293 (17%)
Query: 171 PAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAA 230
P I + + G +A NI A + A+TVRT GP GM+K++++ + + VTND A
Sbjct: 8 PVVILPEGTQRYVG-RDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGA 66
Query: 231 TIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLI 290
TI+ +++++HPAAK+++ ++ Q++E GDGT ++ AG LL A+ LL H
Sbjct: 67 TILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIH------ 120
Query: 291 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTL 350
PS I GY LA K EIL +
Sbjct: 121 --------------------------------------PSIITKGYALAAEKAQEILDEI 142
Query: 351 TCFEVKDVRNVENVTKGIKSAIMSKQY-GNEDFLTDLITKAC--VSILPDGSSSFNVDNV 407
D + E + K ++I K +++ L L +A V+ DG ++DN+
Sbjct: 143 AIR--VDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNI 200
Query: 408 RITKILGSGLFNSEIVQGMVF-KRSVEGDITKQTK-AKIAVYTCPVDIATTET 458
+ K G G+ SE+V+G+V K V + K+ + AKIA+ +++ TET
Sbjct: 201 KFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTET 253
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 54/94 (57%)
Query: 605 AKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAK 664
AKIA+ +++ TET + I S D+LM F EE L++ + IA TGANVV
Sbjct: 237 AKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKG 296
Query: 665 FGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNA 698
D+A HYL KYG+M VR K D+ +L KA A
Sbjct: 297 IDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGA 330
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 89/219 (40%), Gaps = 55/219 (25%)
Query: 426 MVFKRSVEGDITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVV 485
M +R + D+ K KA A V T E +LGYA+ V +L ++
Sbjct: 311 MAVRRVKKSDMEKLAKATGAKIVTNVKDLTPE--------DLGYAEVVEERKLAGENMI- 361
Query: 486 FKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGIT------------------- 526
F + T++IRG TE+ +D++ERA++D V K +
Sbjct: 362 FVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIR 421
Query: 527 -----------------------KVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDI 563
K+ KTLAEN G+ + E++ K+ S H G D+
Sbjct: 422 LDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDV 481
Query: 564 -NGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601
G+ + D E GI++ K A+K A+ AA IL+
Sbjct: 482 FEGKPA---DMLEKGIIEPLRVKKQAIKSASEAAIMILR 517
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 138/293 (47%), Gaps = 52/293 (17%)
Query: 171 PAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAA 230
P I + + G +A NI A + A+TVRT GP GM+K++++ + + VTND A
Sbjct: 8 PVVILPEGTQRYVG-RDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCA 66
Query: 231 TIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLI 290
TI+ +++++HPAAK+++ ++ Q++E GDGT ++ AG LL A+ LL H
Sbjct: 67 TILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIH------ 120
Query: 291 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTL 350
PS I GY LA K EIL +
Sbjct: 121 --------------------------------------PSIITKGYALAAEKAQEILDEI 142
Query: 351 TCFEVKDVRNVENVTKGIKSAIMSKQY-GNEDFLTDLITKAC--VSILPDGSSSFNVDNV 407
D + E + K ++I K +++ L L +A V+ DG ++DN+
Sbjct: 143 AIR--VDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNI 200
Query: 408 RITKILGSGLFNSEIVQGMVF-KRSVEGDITKQTK-AKIAVYTCPVDIATTET 458
+ K G G+ SE+V+G+V K V + K+ + AKIA+ +++ TET
Sbjct: 201 KFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTET 253
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 54/94 (57%)
Query: 605 AKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAK 664
AKIA+ +++ TET + I S D+LM F EE L++ + IA TGANVV
Sbjct: 237 AKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKG 296
Query: 665 FGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNA 698
D+A HYL KYG+M VR K D+ +L KA A
Sbjct: 297 IDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGA 330
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 89/219 (40%), Gaps = 55/219 (25%)
Query: 426 MVFKRSVEGDITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVV 485
M +R + D+ K KA A V T E +LGYA+ V +L ++
Sbjct: 311 MAVRRVKKSDMEKLAKATGAKIVTNVKDLTPE--------DLGYAEVVEERKLAGENMI- 361
Query: 486 FKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGIT------------------- 526
F + T++IRG TE+ +D++ERA++D V K +
Sbjct: 362 FVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIR 421
Query: 527 -----------------------KVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDI 563
K+ KTLAEN G+ + E++ K+ S H G D+
Sbjct: 422 LDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDV 481
Query: 564 -NGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601
G+ + D E GI++ K A+K A+ AA IL+
Sbjct: 482 FEGKPA---DMLEKGIIEPLRVKKQAIKSASEAAIMILR 517
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 132/261 (50%), Gaps = 51/261 (19%)
Query: 190 YRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILG 249
+ NISA K AD +RT+ GP GM+K++ + + +TND ATI++
Sbjct: 14 FSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILK--------------- 58
Query: 250 SQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVI 309
QMQ + HPAA++++ S+ Q+ E GDGT V+
Sbjct: 59 -QMQ----------------------------VLHPAARMLVELSKAQDIEAGDGTTSVV 89
Query: 310 IFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLT-CFEVKDVRNVEN-VTKG 367
I AG+LL + LL+ G+ P+ I ++ AL K +EIL ++ E+ D + N
Sbjct: 90 IIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSDRETLLNSAATS 149
Query: 368 IKSAIMSKQYGNEDFLTDLITKACVSIL-PDGSSSFNVDNVRITKILGSGLFNSEIVQGM 426
+ S ++S QY + L+ + A + ++ P ++S ++ +++I K LG + + E+V+G+
Sbjct: 150 LNSKVVS-QYSS--LLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGL 206
Query: 427 VFKRSVEGD-ITKQTKAKIAV 446
V + V IT+ KAKI +
Sbjct: 207 VLTQKVANSGITRVEKAKIGL 227
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 595 AANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADT 654
A + I + KAKI + + T+ +++ ++ + R E + +K I T
Sbjct: 213 ANSGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKT 272
Query: 655 GANVVVAGAK-----FGDMALHYLNKYGLMGVRLNSKFDLRRLCKAV 696
G NV++ D+ALH+LNK +M V+ + D+ +CK +
Sbjct: 273 GCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTI 319
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 519 VNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGI 578
+ F +V TLAEN G+ +++L + H +G+KT G IN + + E +
Sbjct: 430 IRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTG--INVRKGGISNILEELV 487
Query: 579 LDLYLTKMWALKYATSAANTILQ 601
+ L + AL AT +IL+
Sbjct: 488 VQPLLVSVSALTLATETVRSILK 510
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 140/292 (47%), Gaps = 50/292 (17%)
Query: 170 LPAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDA 229
+P I + G +EAV NI+A K + +++ YGP GM+K++++ + + +TND
Sbjct: 14 IPVIILKEGSSRTYG-KEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDG 72
Query: 230 ATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKL 289
ATI+ +++++HPAAKL++ ++ Q+EE DGT +IF+G L+ A++LL HP +
Sbjct: 73 ATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPT--I 130
Query: 290 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPT 349
II G + EE + A + +N +LLR K+A
Sbjct: 131 IISGYKKAEEV---ALQTIQELAQTVSINDTDLLR------------KIA---------- 165
Query: 350 LTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSI--LPDGSSSFNVDNV 407
+T K V G +++ D++ KA + L ++DN+
Sbjct: 166 MTSLSSKAV------------------AGAREYIADIVVKAVTQVAELRGDKWYVDLDNI 207
Query: 408 RITKILGSGLFNSEIVQGMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTE 457
+I K G + ++++V G+V + V G + AKIA+ +++ E
Sbjct: 208 QIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPE 259
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%)
Query: 605 AKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAK 664
AKIA+ +++ E + I ++ KF EEN ++E++ I TGANV++
Sbjct: 244 AKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKG 303
Query: 665 FGDMALHYLNKYGLMGVRLNSKFDLRRLCKA 695
++A YL K G++ VR K DL +L +A
Sbjct: 304 IDEVAQSYLAKKGVLAVRRAKKSDLEKLARA 334
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 46/179 (25%)
Query: 466 ELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGI 525
+LGYA + ++G+ +V F A + +++IRG E +D+ ERA+ D + T +
Sbjct: 350 DLGYASLIEERKVGEDKMV-FVEGAKNPKSISILIRGGLERLVDETERALRDALGTVADV 408
Query: 526 TK------------------------------------------VFVKTLAENTGVKSNE 543
K V L EN G +
Sbjct: 409 IKDGRAIAGGGAVEIEIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPID 468
Query: 544 VISKLYSAH-NEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601
++ KL S H NE K YG D+ +D + G+++ L KM A+K AT AA +L+
Sbjct: 469 LLMKLRSTHENENNKWYGIDLYA--GQPVDMWQKGVIEPALVKMNAIKAATEAATLVLR 525
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 136/276 (49%), Gaps = 47/276 (17%)
Query: 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLI 246
EA+ +I A K A+T++T+ GPNG++K++++ + VTND ATI+ ++++H AKL+
Sbjct: 10 EALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLM 69
Query: 247 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTN 306
+ S+ Q++E+GDGT V++ AGALL A+ L
Sbjct: 70 VELSKSQDDEIGDGTTGVVVLAGALLEEAEQL---------------------------- 101
Query: 307 FVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTK 366
L G+ P I +GY+ A +E L ++ + D++N E + +
Sbjct: 102 ----------------LDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQ 145
Query: 367 GIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQG 425
K+ + SK + + ++ A +++ + + +++ +G L ++++++G
Sbjct: 146 TAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKG 205
Query: 426 MVFKRSVEG-DITKQTK-AKIAVYTCPVDIATTETK 459
++ + + KQ + AKIA+ TCP + +TK
Sbjct: 206 VIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTK 241
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%)
Query: 601 QQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVV 660
Q AKIA+ TCP + +TK + + S ++ + E+ + EE I+ I +TGAN+ V
Sbjct: 220 QVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAV 279
Query: 661 AGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
F D A H L + L VR ++ + A +PR
Sbjct: 280 CQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRF 323
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 140/297 (47%), Gaps = 56/297 (18%)
Query: 171 PAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAA 230
P I + K SG ++A+ NI A +++VR++ GP GM+K++++ + + +TND
Sbjct: 6 PIFILKEGTKRESG-KDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGV 64
Query: 231 TIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLI 290
TI++E+++EHPAAK+++ S+ Q+ +GDGT +I AG LL A L+ HP +I
Sbjct: 65 TILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPT--VI 122
Query: 291 ILGSQMQEEEMGDGTNFVIIFAGALLVNADN---LLRMGLTPSEIVNGYKLALAKTLEIL 347
G +M EE +I + + AD LL+M T +N ++AK
Sbjct: 123 SEGYRMASEEAKR-----VIDEISTKIGADEKALLLKMAQTS---LNSKSASVAK----- 169
Query: 348 PTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSI--LPDGSSSFNVD 405
D L ++ +A S+ L DG + D
Sbjct: 170 ---------------------------------DKLAEISYEAVKSVAELRDGKYYVDFD 196
Query: 406 NVRITKILGSGLFNSEIVQGMVF-KRSVEGDITKQTK-AKIAVYTCPVDIATTETKT 460
N+++ K G + +++++ G++ K V + K AKIA+ P++I E T
Sbjct: 197 NIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDT 253
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 605 AKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAK 664
AKIA+ P++I E + I+ + KF EEN L E + I GANVV+
Sbjct: 235 AKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKG 294
Query: 665 FGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPS 713
DMA HYL++ G+ VR K D+ +L KA A+ +VST ++ S
Sbjct: 295 IDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGAS----IVSTIDEISS 339
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 89/217 (41%), Gaps = 55/217 (25%)
Query: 428 FKRSVEGDITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFK 487
+R + D+ K KA A +D ++S+LG A+ V ++G+ + F
Sbjct: 311 VRRVKKSDMDKLAKATGASIVSTID--------EISSSDLGTAERVEQVKVGED-YMTFV 361
Query: 488 LEAAESRIATLVIRGATENYMDDIERAVDD------------------------------ 517
+ ++++RG TE+ +D++ER++ D
Sbjct: 362 TGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLR 421
Query: 518 ------------GVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDI-N 564
+ F + + LAEN G+ +++ KL + H +G KTYG ++
Sbjct: 422 SYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFT 481
Query: 565 GENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601
GE + D + G+++ A++ AT AA IL+
Sbjct: 482 GE---IEDMVKNGVIEPIRVGKQAIESATEAAIMILR 515
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 130/267 (48%), Gaps = 54/267 (20%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+E NI A + AD +RT+ GP GM+K++ ++ ++ND TI++++
Sbjct: 18 QEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQM--------- 68
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
I HP A++++ S Q+ E GDGT
Sbjct: 69 -----------------------------------AILHPVARMLVEVSAAQDSEAGDGT 93
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
V+I GALL A+ LL G+ P+ I + ++ A ++++IL + C +V + + E +
Sbjct: 94 TSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEM-CHKVS-LSDREQLV 151
Query: 366 KGIKSAIMSK---QYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEI 422
+ +++ SK QY + FL L + + I + S + +++++R+ K +G + ++E+
Sbjct: 152 RAASTSLSSKIVSQYSS--FLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTIDDTEM 209
Query: 423 VQGMVFKRSV---EGDITKQTKAKIAV 446
+ G+V ++ G T++ KAKI +
Sbjct: 210 IDGVVLTQTAIKSAGGPTRKEKAKIGL 236
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 522 FKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDL 581
F +V TLAEN G+ S +V+++L S H G+ G + S + E IL
Sbjct: 443 FASALEVIPTTLAENAGLNSIKVVTELRSKHENGELNDGISV--RRSGTTNTYEEHILQP 500
Query: 582 YLTKMWALKYATSAANTILQ 601
L A+ A+ +IL+
Sbjct: 501 VLVSTSAITLASECVKSILR 520
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 137/299 (45%), Gaps = 57/299 (19%)
Query: 174 IFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATII 233
+F + + +A NI+A K AD +RT GP M K++++ + L +TND I+
Sbjct: 6 VFMNASQERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAIL 65
Query: 234 RELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILG 293
RE+++ HPAAK ++ S+ Q+EE+GDGT VII AG +L
Sbjct: 66 REIDVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQC------------------ 107
Query: 294 SQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCF 353
A L+ + P I+ K AL LE++ ++
Sbjct: 108 -------------------------APYLIEKNIHPVIIIQALKKALTDALEVIKQVS-- 140
Query: 354 EVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPD------GSSSFNVD- 405
+ DV N + K I+++I +K + + + +L A ++ D G +F +D
Sbjct: 141 KPVDVENDAAMKKLIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDI 200
Query: 406 --NVRITKILGSGLFNSEIVQGMVFKRS-VEGDITKQTK-AKIAVYTCPVDIATTETKT 460
VR+ KI G + +S +++G++ + V +++ + ++ + CP++ E++T
Sbjct: 201 KRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGESQT 259
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 606 KIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLE---EQIKAIADTGANVVVAG 662
++ + CP++ E++ + I+ ++ + + EE Q++ EQI A+ T +V+
Sbjct: 242 RVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPT---LVITE 298
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL K G +R K D R+ + AT + R+
Sbjct: 299 KGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRV 340
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 531 KTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALK 590
+TL +N G ++S+L + H +G T G D G+ ++D GI + + K ++K
Sbjct: 510 RTLIQNAGGDPIRLLSQLRAKHAQGNFTTGID--GDKGKIVDMVSYGIWEPEVIKQQSVK 567
Query: 591 YATSAANTILQ 601
A +A +L+
Sbjct: 568 TAIESACLLLR 578
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 182/393 (46%), Gaps = 72/393 (18%)
Query: 191 RNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGS 250
+N+ A A+ V+++ GP G++K++++ I + +TND ATI++ LE+EHPAAK++ +
Sbjct: 14 QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 73
Query: 251 QMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVII 310
+Q++E+GDGT V+I A LL NAD L++ HP + +I G ++ +E V
Sbjct: 74 DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTS--VISGYRLACKEA------VRY 125
Query: 311 FAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKS 370
+ L++N D L R + + K+
Sbjct: 126 ISENLIINTDELGR-------------------------------------DCLINAAKT 148
Query: 371 AIMSKQYG-NEDFLTDLITKACVSIL---PDGSSSFNVDNVRITKILGSGLFNSEIVQGM 426
++ SK G N DF +L+ A ++I G + V+++ + K G S ++ G
Sbjct: 149 SMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGY 208
Query: 427 VFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVV 484
V +G + AKIA C +D + +TK ++ D +D++
Sbjct: 209 ALNCVVGSQGMPKRIVNAKIA---C-LDFSLQKTKMKLGV-QVVITDPEKLDQIRQRESD 263
Query: 485 VFKLEAAESRIATLVIRGA----TENYMDD--IERAVDDGVNTFKGITKVFVKTLAENTG 538
+ K RI ++ GA T +DD ++ V+ G + + K +K +A+ +G
Sbjct: 264 ITK-----ERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASG 318
Query: 539 VKSNEVISKLYSAHNEGKKTYGFDINGENSSVI 571
V+S L A+ EG++T+ + G+ V+
Sbjct: 319 AT---VLSTL--ANLEGEETFEASMLGQAEEVV 346
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 57/228 (25%)
Query: 425 GMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVV 484
M +R ++ D+ + KA A T +A E + AS LG A+ V + + D ++
Sbjct: 299 AMAVRRVLKRDLKRIAKASGA--TVLSTLANLEGEETFEASMLGQAEEVVQERICDDELI 356
Query: 485 VFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK----------------- 527
+ K A + A++++RGA + D++ER++ D + K + +
Sbjct: 357 LIKNTKARTS-ASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSI 415
Query: 528 -------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGK------ 556
V TLA N S ++++KL + HNE +
Sbjct: 416 YLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERK 475
Query: 557 --KTYGFD-INGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601
K G D +NG+ D +AG+ + + K+ +LK+AT AA TIL+
Sbjct: 476 NLKWIGLDLVNGKPR---DNKQAGVFEPTIVKVKSLKFATEAAITILR 520
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 14/105 (13%)
Query: 600 LQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVV 659
LQ+TK K+ V V+I ++L + + E + +E+I+ I TGANV+
Sbjct: 235 LQKTKMKLGVQ--------------VVITDPEKLDQIRQRESDITKERIQKILATGANVI 280
Query: 660 VAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
+ DM L Y + G M VR K DL+R+ KA AT L L
Sbjct: 281 LTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATVLSTL 325
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 63/94 (67%)
Query: 192 NISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQ 251
NI+A K AD +RT GP M K++++ + + +TND I+RE++++HPAAK +I S+
Sbjct: 14 NINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISR 73
Query: 252 MQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHP 285
Q+EE+GDGT VII AG +L A++ L HP
Sbjct: 74 TQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHP 107
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 44/98 (44%)
Query: 606 KIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKF 665
+I + ++ E++ + I ++ + + EE +++ + I +VV+
Sbjct: 225 RIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGI 284
Query: 666 GDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPR 703
D+A HYL + + +R K D R+ +A A + R
Sbjct: 285 SDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSR 322
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 136/302 (45%), Gaps = 70/302 (23%)
Query: 176 QYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRE 235
Q K GLE A +I A + A ++T+ GP G++KI+I+ ++ +TND ATI+ +
Sbjct: 35 QGNKKRQHGLE-AKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQ 93
Query: 236 LEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQ 295
+E+++ AKL++ S+ Q++E+GDGT V++ A ALL D L +I+
Sbjct: 94 MELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALL---DQALELIQK----------- 139
Query: 296 MQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGY----KLALAKTLEILPTLT 351
G+ P +I NG+ KLA++K E ++
Sbjct: 140 ------------------------------GIHPIKIANGFDEAAKLAISKLEETCDDIS 169
Query: 352 CFEVKDVRN--VENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRI 409
+ R+ + + S I+SK + D ++ +A ++++ + D +++
Sbjct: 170 ASNDELFRDFLLRAAKTSLGSKIVSKDH---DRFAEMAVEAVINVMDKDRKDVDFDLIKM 226
Query: 410 TKILGSGLFNSEIVQGMVFKRSV------------EGDITKQTKAKIAVYTCPVDIATTE 457
+G + +S+++ G++ + EG K+A+ TCP + +
Sbjct: 227 QGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEG----SDGVKLAILTCPFEPPKPK 282
Query: 458 TK 459
TK
Sbjct: 283 TK 284
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%)
Query: 606 KIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKF 665
K+A+ TCP + +TK + I S +E K E+++ +E I + GA+VV+ F
Sbjct: 268 KLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGF 327
Query: 666 GDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D A H L + L VR +L + + N +PR
Sbjct: 328 DDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRF 366
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 63/95 (66%)
Query: 191 RNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGS 250
+N+ A A+ V+++ GP G++K++++ I VTND ATI+ L+++HPA K+++ +
Sbjct: 28 QNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELA 87
Query: 251 QMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHP 285
Q Q+ E+GDGT V+I A LL A+ L++ HP
Sbjct: 88 QQQDREIGDGTTSVVIIASELLKRANELVKNKIHP 122
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 627 IKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSK 686
I ++L + + E + E++K I D GA VV+ D+ L + +MGVR K
Sbjct: 264 IDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIMGVRRCKK 323
Query: 687 FDLRRLCKAVNAT 699
DLRR+ +A AT
Sbjct: 324 EDLRRIARATGAT 336
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 105/261 (40%), Gaps = 71/261 (27%)
Query: 408 RITKILGSG---LFNSEIVQGMVFKRSVEGDIT------KQTKAKIAVYTCPVDIATT-- 456
R+ KI+ +G + ++ + + K VE I K+ +IA T +++
Sbjct: 284 RVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSN 343
Query: 457 -ETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAV 515
E + +S LG D V + D ++ K + S +++++RGA + +D++ER++
Sbjct: 344 LEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSKHSS-SSIILRGANDYSLDEMERSL 402
Query: 516 DDGVNT------------------------------------------FKGITKVFVKTL 533
D ++ F + KTL
Sbjct: 403 HDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTL 462
Query: 534 AENTGVKSNEVISKLYSAHNEGK------------KTYGFD-INGENSSVIDAAEAGILD 580
A N S+E+++KL S H + + YG D I G+ ++D AG+L+
Sbjct: 463 AVNAAKDSSELVAKLRSYHAASQMAKPEDVKRRSYRNYGLDLIRGK---IVDEIHAGVLE 519
Query: 581 LYLTKMWALKYATSAANTILQ 601
++K+ +LK A A IL+
Sbjct: 520 PTISKVKSLKSALEACVAILR 540
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 97/187 (51%), Gaps = 12/187 (6%)
Query: 282 IEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341
I+HPAAK+I+ S+ Q+ E+GDGT + +G LL A+ L+ G+ + I GY+ A
Sbjct: 24 IQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISEGYRHAAE 83
Query: 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDF---LTDLITKACVSILPDG 398
K EIL T+T D + + K +AI K G E + L+ L KA SI+ +
Sbjct: 84 KCREILETITIAISPD--DEAALIKIAGTAITGK--GAEAYKEKLSALTVKAVRSIVEEE 139
Query: 399 SSSFNV---DNVRITKILGSGLFNSEIVQGMVF--KRSVEGDITKQTKAKIAVYTCPVDI 453
V +N++I K G + +SE++ G+V +RS K AKI + +CPV+
Sbjct: 140 EDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEF 199
Query: 454 ATTETKT 460
TE +
Sbjct: 200 RKTEVDS 206
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 51/100 (51%)
Query: 605 AKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAK 664
AKI + +CPV+ TE + I S ++ F EE + E + + +GANVV
Sbjct: 188 AKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKG 247
Query: 665 FGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
DMA +Y+ K G+ VR K DL+RL K AT + L
Sbjct: 248 IDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDL 287
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 519 VNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDI-NGENSSVIDAAEAG 577
V+ F +V LAEN G+ +++ +L S H +G K G ++ GE V+D E
Sbjct: 388 VSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEKGNKNAGLNVYTGE---VVDMWEND 444
Query: 578 ILDLYLTKMWALKYATSAANTILQ 601
+++ K A+ A A IL+
Sbjct: 445 VIEPLRIKTQAINAAMEATVMILR 468
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%)
Query: 192 NISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQ 251
NISAC+ A+ VRT GP GM+K++++ K ++ND ATI++ L++ HPAAK ++ ++
Sbjct: 16 NISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAK 75
Query: 252 MQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHP 285
Q+ E+GDGT V + A L + HP
Sbjct: 76 SQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHP 109
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 64/151 (42%), Gaps = 44/151 (29%)
Query: 492 ESRIATLVIRGATENYMDDIERAVDDGV-------------------------------N 520
+++ T+++RG E +M++ ER++ D +
Sbjct: 357 KAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSR 416
Query: 521 TFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSS 569
T G ++ + + L +N G + +++KL + H +G YG DIN E+
Sbjct: 417 TIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDINTED-- 474
Query: 570 VIDAAEAGILDLYLTKMWALKYATSAANTIL 600
+ D EA + + + ++ AL A+ AA I+
Sbjct: 475 IADNFEAFVWEPAMVRINALTAASEAACLIV 505
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Query: 199 FADTVRTAYGPNGMNKIVIN--HIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEE 256
D V++ GP GM+KI+++ L VTND ATI++ + +++PAAK+++ S++Q++E
Sbjct: 22 IGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDE 81
Query: 257 MGDGTNFVIIFAGALLVNADNLLRMIEHP 285
+GDGT V + A LL A++L+ HP
Sbjct: 82 VGDGTTSVTVLAAELLREAESLIAKKIHP 110
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 44/147 (29%)
Query: 497 TLVIRGATENYMDDIERAVDDGV----NTFK-----------------GITKVFVKT--- 532
T+V+RGAT+ +D+ ER++ D + T K +T++ +T
Sbjct: 359 TIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGK 418
Query: 533 ------------------LAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAA 574
+A+N G S +++++L +AH+EGK T G D+ + ++ D +
Sbjct: 419 EAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDM--KEGTIGDMS 476
Query: 575 EAGILDLYLTKMWALKYATSAANTILQ 601
GI + + K L A AA IL+
Sbjct: 477 VLGITESFQVKRQVLLSAAEAAEVILR 503
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Query: 189 VYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIIL 248
+ NI+AC + ++ GP G + +++ K ++ND ATI++ L++ HPAAK ++
Sbjct: 26 IISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTLVD 85
Query: 249 GSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILG 293
S+ Q+ E+GDGT V I AG L+ A L E ++ LI+ G
Sbjct: 86 ISRAQDAEVGDGTTSVTILAGELMKEAKPFLE--EGISSHLIMKG 128
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 44/151 (29%)
Query: 492 ESRIATLVIRGATENYMDDIERAVDDGV-------------------------------- 519
+++ TL++RG E + ++ER++ D +
Sbjct: 370 QAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSK 429
Query: 520 ----------NTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSS 569
N F +V + L EN G + E+++KL AH++G+K YG EN
Sbjct: 430 TIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEKWYGVVFETEN-- 487
Query: 570 VIDAAEAGILDLYLTKMWALKYATSAANTIL 600
+ D + + L K+ AL AT A N IL
Sbjct: 488 IGDNFAKFVWEPALVKINALNSATEATNLIL 518
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/94 (19%), Positives = 42/94 (44%)
Query: 606 KIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKF 665
KI +++ + V ++ ++ E + E+++ + +TGAN+V++
Sbjct: 240 KILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPI 299
Query: 666 GDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNAT 699
GD+A + + S D+ R+ +AV +
Sbjct: 300 GDLATQFFADRNIFCAGRVSADDMNRVIQAVGGS 333
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 50/95 (52%)
Query: 605 AKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAK 664
AKIA+ P++I E + I+ + KF EEN L E + I GANVV+
Sbjct: 22 AKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKG 81
Query: 665 FGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNAT 699
DMA HYL++ G+ VR K D+ +L KA A+
Sbjct: 82 IDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGAS 116
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Query: 200 ADTVRTAYGPNGMNKIVIN-HIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMG 258
D V++ GP GM+K++ + + VTND ATI++ + +++PAAK+++ S++Q++E+G
Sbjct: 30 GDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVG 89
Query: 259 DGTNFVIIFAGALLVNADNLLRMIE-HP 285
DGT V + + LL A+ L+ + HP
Sbjct: 90 DGTTSVTVLSAELLREAEKLIDQSKIHP 117
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 47/183 (25%)
Query: 462 PAASELGYADSVAVDELGDTAVVVFK-LEAAESRIATLVIRGATENYMDDIERAVDDGVN 520
P+ +LG D + LG+ + F +A E+ T+V+RGAT+ +D+ ER++ D ++
Sbjct: 332 PSKCKLGECDVIEEIMLGEQPFLKFSGCKAGEA--CTIVLRGATDQTLDEAERSLHDALS 389
Query: 521 TFKGITK-----------------------------------VFVKTL-------AENTG 538
TK F + L A+N G
Sbjct: 390 VLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAG 449
Query: 539 VKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANT 598
S+E++SKL S+ G T G D+N N ++ D + GI++ Y K + A+ AA
Sbjct: 450 FDSSELVSKLRSSIYNGISTSGLDLN--NGTIADMRQLGIVESYKLKRAVVSSASEAAEV 507
Query: 599 ILQ 601
+L+
Sbjct: 508 LLR 510
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+ A+ NISA + D +RT GP G K++++ + +T D ++ E++I+HP A L
Sbjct: 9 QAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASL 68
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHP 285
I + Q++ GDGT ++ G LL AD + HP
Sbjct: 69 IAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHP 108
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 518 GVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAG 577
GV F + K LA+N+G E + K+ + H+E + G D+N V AAEAG
Sbjct: 428 GVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLNTGEPMV--AAEAG 485
Query: 578 ILDLYLTKMWALKYATSAANTIL 600
I D Y K L T A IL
Sbjct: 486 IWDNYCVKKQLLHSCTVIATNIL 508
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%)
Query: 605 AKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAK 664
AKIA+ ++I TE + V I ++ F E N ++ ++ I +GANVV+
Sbjct: 22 AKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKG 81
Query: 665 FGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL K G+ VR K D+ +L KA A + L
Sbjct: 82 IDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDL 121
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+ A+ N+++ + + T GP G K++++ + +T D ++ E++I+ P A L
Sbjct: 16 DAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVL 75
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEE 300
I + Q+E GDGT V+ G LL A ++ HP ++I G ++ +E
Sbjct: 76 IARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHP--RIITDGFEIARKE 128
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 11/105 (10%)
Query: 172 AAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAAT 231
A Y ++ GLE R ++A AD V+ GP G N ++ +TND +
Sbjct: 2 AKTIAYDEEARRGLE----RGLNA---LADAVKVTLGPKGRNVVLEKKWGAPTITNDGVS 54
Query: 232 IIRELEIEHP----AAKLIILGSQMQEEEMGDGTNFVIIFAGALL 272
I +E+E+E P A+L+ ++ ++ GDGT + A AL+
Sbjct: 55 IAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALV 99
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 199 FADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEE--- 255
AD V+ GP G N ++ +T D ++ RE+E+E K +G+QM +E
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELED---KFENMGAQMVKEVAS 78
Query: 256 ----EMGDGTNFVIIFAGALL 272
GDGT + A A++
Sbjct: 79 KANDAAGDGTTTATVLAQAII 99
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 199 FADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEE--- 255
AD V+ GP G N ++ +T D ++ RE+E+E K +G+QM +E
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELED---KFENMGAQMVKEVAS 78
Query: 256 ----EMGDGTNFVIIFAGALL 272
GDGT + A A++
Sbjct: 79 KANDAAGDGTTTATVLAQAII 99
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 199 FADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEE--- 255
AD V+ GP G N ++ +T D ++ RE+E+E K +G+QM +E
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELED---KFENMGAQMVKEVAS 78
Query: 256 ----EMGDGTNFVIIFAGALL 272
GDGT + A A++
Sbjct: 79 KANDAAGDGTTTATVLAQAII 99
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 199 FADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEE--- 255
AD V+ GP G N ++ +T D ++ RE+E+E K +G+QM +E
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELED---KFENMGAQMVKEVAS 78
Query: 256 ----EMGDGTNFVIIFAGALL 272
GDGT + A A++
Sbjct: 79 KANDAAGDGTTTATVLAQAII 99
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 199 FADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEE--- 255
AD V+ GP G N ++ +T D ++ RE+E+E K +G+QM +E
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELED---KFENMGAQMVKEVAS 78
Query: 256 ----EMGDGTNFVIIFAGALL 272
GDGT + A A++
Sbjct: 79 KANDAAGDGTTTATVLAQAII 99
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 199 FADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEE--- 255
AD V+ GP G N ++ +T D ++ RE+E+E K +G+QM +E
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELED---KFENMGAQMVKEVAS 78
Query: 256 ----EMGDGTNFVIIFAGALL 272
GDGT + A A++
Sbjct: 79 KANDAAGDGTTTATVLAQAII 99
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 199 FADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEE--- 255
AD V+ GP G N ++ +T D ++ RE+E+E K +G+QM +E
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELED---KFENMGAQMVKEVAS 78
Query: 256 ----EMGDGTNFVIIFAGALL 272
GDGT + A A++
Sbjct: 79 KANDAAGDGTTTATVLAQAII 99
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 199 FADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEE--- 255
AD V+ GP G N ++ +T D ++ RE+E+E K +G+QM +E
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELED---KFENMGAQMVKEVAS 78
Query: 256 ----EMGDGTNFVIIFAGALL 272
GDGT + A A++
Sbjct: 79 KANDAAGDGTTTATVLAQAII 99
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 199 FADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEE--- 255
AD V+ GP G N ++ +T D ++ RE+E+E K +G+QM +E
Sbjct: 23 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELED---KFENMGAQMVKEVAS 79
Query: 256 ----EMGDGTNFVIIFAGALL 272
GDGT + A A++
Sbjct: 80 KANDAAGDGTTTATVLAQAII 100
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 199 FADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEE--- 255
AD V+ GP G N ++ +T D ++ RE+E+E K +G+QM +E
Sbjct: 23 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELED---KFENMGAQMVKEVAS 79
Query: 256 ----EMGDGTNFVIIFAGALL 272
GDGT + A A++
Sbjct: 80 KANDAAGDGTTTATVLAQAII 100
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 199 FADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEE--- 255
AD V+ GP G N ++ +T D ++ RE+E+E K +G+QM +E
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELED---KFENMGAQMVKEVAS 78
Query: 256 ----EMGDGTNFVIIFAGALL 272
GDGT + A A++
Sbjct: 79 KANDAAGDGTTTATVLAQAII 99
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 199 FADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEE--- 255
AD V+ GP G N ++ +T D ++ RE+E+E K +G+QM +E
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELED---KFENMGAQMVKEVAS 78
Query: 256 ----EMGDGTNFVIIFAGALL 272
GDGT + A A++
Sbjct: 79 KANDAAGDGTTTATVLAQAII 99
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 199 FADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEE--- 255
AD V+ GP G N ++ +T D ++ RE+E+E K +G+QM +E
Sbjct: 23 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELED---KFENMGAQMVKEVAS 79
Query: 256 ----EMGDGTNFVIIFAGALL 272
GDGT + A A++
Sbjct: 80 KANDAAGDGTTTATVLAQAII 100
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 199 FADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEE--- 255
AD V+ GP G N ++ +T D ++ RE+E+E K +G+QM +E
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELED---KFENMGAQMVKEVAS 78
Query: 256 ----EMGDGTNFVIIFAGALL 272
GDGT + A A++
Sbjct: 79 KANDAAGDGTTTATVLAQAII 99
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 28/121 (23%)
Query: 191 RNISACKDFADTVRTAYGPNGMNKIVINHIDKLF----VTNDAATIIRELEIEHPAAKLI 246
R + AD V+ GP G N + IDK F +T D ++ +E+E+ K
Sbjct: 15 RMLKGVNILADAVKVTLGPKGRNVV----IDKSFGAPRITKDGVSVAKEIELSD---KFE 67
Query: 247 ILGSQMQEE-------EMGDGTNFVIIFAGALL----------VNADNLLRMIEHPAAKL 289
+G+QM E E GDGT + A A++ +N +L R I+ AK+
Sbjct: 68 NMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKV 127
Query: 290 I 290
+
Sbjct: 128 V 128
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Query: 188 AVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLII 247
A+ R ++A A+ V+ GP G N ++ +T D T+ +E+E+E L
Sbjct: 14 ALERGVNAV---ANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELED---HLEN 67
Query: 248 LGSQMQEE-------EMGDGTNFVIIFAGALL 272
+G+Q+ +E GDGT + A A++
Sbjct: 68 IGAQLLKEVASKTNDVAGDGTTTATVLAQAIV 99
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 43/98 (43%)
Query: 606 KIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKF 665
+I + ++ E++ + I ++ + + EE + + + I +VV+
Sbjct: 29 RIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGI 88
Query: 666 GDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPR 703
D+A HYL + + +R K D R+ +A A + R
Sbjct: 89 SDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSR 126
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 225 VTNDAATIIRELEIEHP----AAKLIILGSQMQEEEMGDGTNFVIIFAGALL 272
+TND +I +E+E+E P A+L+ ++ ++ GDGT + A AL+
Sbjct: 6 ITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALV 57
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 66/176 (37%), Gaps = 39/176 (22%)
Query: 227 NDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPA 286
+D T IREL+ HPAAK + + +++ NAD L+R I
Sbjct: 328 DDELTEIRELKAAHPAAKFLTVANKLDRA-----------------ANADALIRAIADGT 370
Query: 287 AKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNL-----LRMGLTPSEIVNGYKLALA 341
+I S + GDG + + G L+ N D L L L E + AL
Sbjct: 371 GTEVIGISALN----GDGIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEALRNASDALQ 426
Query: 342 KTLEILP-----TLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACV 392
LE++ L FE++ + G + NE+ L + K C+
Sbjct: 427 NALELIAHESETELIAFELRAALDYVGQITG--------KVVNEEVLNTIFDKFCI 474
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 477 ELGDTAVVVFKLEAA-ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITKVF 529
++ D AVV K EAA E +A +V +E DD+++ V V +K I KVF
Sbjct: 505 DITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVF 558
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,157,213
Number of Sequences: 62578
Number of extensions: 874351
Number of successful extensions: 2809
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2588
Number of HSP's gapped (non-prelim): 190
length of query: 745
length of database: 14,973,337
effective HSP length: 106
effective length of query: 639
effective length of database: 8,340,069
effective search space: 5329304091
effective search space used: 5329304091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)